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Conserved domains on  [gi|489133019|ref|WP_003042805|]
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MULTISPECIES: Maff2 family mobile element protein [Bacillati]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Maff2 super family cl15067
Maff2 family; This family of short membrane proteins are related to the protein Maff2. Maff2 ...
 1-70 1.77e-28

Maff2 family; This family of short membrane proteins are related to the protein Maff2. Maff2 lies just outside the direct repeats of a tetracycline resistance transposable element. This protein may contain transmembrane helices.


The actual alignment was detected with superfamily member pfam12750:

Pssm-ID: 432759  Cd Length: 70  Bit Score: 96.39  E-value: 1.77e-28
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489133019   1 MAFFTQAVNVLKILVMAVGAGLGAWGVINLMEGYGNDNPGAKSQGIKQLMAGGGIVLIGLKLIPLLAGVL 70
Cdd:pfam12750  1 MEFFTQAIDVLQTLVIALGAGLGVWGVVNLLEGYGNDNPGAKSQGIKQLMAGGGIVLIGTKLIPLLSGLF 70
 
Name Accession Description Interval E-value
Maff2 pfam12750
Maff2 family; This family of short membrane proteins are related to the protein Maff2. Maff2 ...
 1-70 1.77e-28

Maff2 family; This family of short membrane proteins are related to the protein Maff2. Maff2 lies just outside the direct repeats of a tetracycline resistance transposable element. This protein may contain transmembrane helices.


Pssm-ID: 432759  Cd Length: 70  Bit Score: 96.39  E-value: 1.77e-28
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489133019   1 MAFFTQAVNVLKILVMAVGAGLGAWGVINLMEGYGNDNPGAKSQGIKQLMAGGGIVLIGLKLIPLLAGVL 70
Cdd:pfam12750  1 MEFFTQAIDVLQTLVIALGAGLGVWGVVNLLEGYGNDNPGAKSQGIKQLMAGGGIVLIGTKLIPLLSGLF 70
 
Name Accession Description Interval E-value
Maff2 pfam12750
Maff2 family; This family of short membrane proteins are related to the protein Maff2. Maff2 ...
 1-70 1.77e-28

Maff2 family; This family of short membrane proteins are related to the protein Maff2. Maff2 lies just outside the direct repeats of a tetracycline resistance transposable element. This protein may contain transmembrane helices.


Pssm-ID: 432759  Cd Length: 70  Bit Score: 96.39  E-value: 1.77e-28
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489133019   1 MAFFTQAVNVLKILVMAVGAGLGAWGVINLMEGYGNDNPGAKSQGIKQLMAGGGIVLIGLKLIPLLAGVL 70
Cdd:pfam12750  1 MEFFTQAIDVLQTLVIALGAGLGVWGVVNLLEGYGNDNPGAKSQGIKQLMAGGGIVLIGTKLIPLLSGLF 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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