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Conserved domains on  [gi|491685233|ref|WP_005541371|]
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MULTISPECIES: single-strand DNA-binding protein [Bacteria]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ssb super family cl43217
Single-stranded DNA-binding protein [Replication, recombination and repair];
6-88 1.54e-05

Single-stranded DNA-binding protein [Replication, recombination and repair];


The actual alignment was detected with superfamily member COG0629:

Pssm-ID: 440394  Cd Length: 116  Bit Score: 40.59  E-value: 1.54e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491685233   6 ININANLVAEPTFSNFEkDGetVEVANFTLV------KKYGKGKE---YINCAAYGEKAEKAKDF-EKGDLIHIFGYFKK 75
Cdd:COG0629    4 VTLVGRLGKDPELRYTP-SG--TAVANFRLAvnrrykDQDGEWKDetdWHRVVAWGKLAENAAEYlKKGDKVYVEGRLRT 80

                         90
                 ....*....|....*.
gi 491685233  76 RE---KEGKTYKNFVV 88
Cdd:COG0629   81 RSwedKDGQKRYTTEV 96
 
Name Accession Description Interval E-value
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
6-88 1.54e-05

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 40.59  E-value: 1.54e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491685233   6 ININANLVAEPTFSNFEkDGetVEVANFTLV------KKYGKGKE---YINCAAYGEKAEKAKDF-EKGDLIHIFGYFKK 75
Cdd:COG0629    4 VTLVGRLGKDPELRYTP-SG--TAVANFRLAvnrrykDQDGEWKDetdWHRVVAWGKLAENAAEYlKKGDKVYVEGRLRT 80

                         90
                 ....*....|....*.
gi 491685233  76 RE---KEGKTYKNFVV 88
Cdd:COG0629   81 RSwedKDGQKRYTTEV 96
PRK05813 PRK05813
single-stranded DNA-binding protein; Provisional
 39-89 6.36e-03

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235616 [Multi-domain]  Cd Length: 219  Bit Score: 34.23  E-value: 6.36e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 491685233  39 YGKgKEYINCAAYGEKAEKAKDFEKGDLIHIFGYFKKREKEGKTYKNFVVK 89
Cdd:PRK05813 144 YNK-SDYIPCIAWGRNARFCKTLEVGDNIRVWGRVQSREYQKKLSEGEVVT 193
 
Name Accession Description Interval E-value
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
6-88 1.54e-05

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 40.59  E-value: 1.54e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491685233   6 ININANLVAEPTFSNFEkDGetVEVANFTLV------KKYGKGKE---YINCAAYGEKAEKAKDF-EKGDLIHIFGYFKK 75
Cdd:COG0629    4 VTLVGRLGKDPELRYTP-SG--TAVANFRLAvnrrykDQDGEWKDetdWHRVVAWGKLAENAAEYlKKGDKVYVEGRLRT 80

                         90
                 ....*....|....*.
gi 491685233  76 RE---KEGKTYKNFVV 88
Cdd:COG0629   81 RSwedKDGQKRYTTEV 96
PRK05813 PRK05813
single-stranded DNA-binding protein; Provisional
 39-89 6.36e-03

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235616 [Multi-domain]  Cd Length: 219  Bit Score: 34.23  E-value: 6.36e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 491685233  39 YGKgKEYINCAAYGEKAEKAKDFEKGDLIHIFGYFKKREKEGKTYKNFVVK 89
Cdd:PRK05813 144 YNK-SDYIPCIAWGRNARFCKTLEVGDNIRVWGRVQSREYQKKLSEGEVVT 193
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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