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Conserved domains on  [gi|497074833|ref|WP_009460050|]
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MULTISPECIES: cytochrome b559 subunit alpha [Fischerella]

Protein Classification

cytochrome b559 subunit alpha( domain architecture ID 11479821)

cytochrome b559 subunit alpha is b-type cytochrome that is tightly associated with the reaction center of photosystem II (PSII)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PsbE COG5720
Photosystem II cytochrome b559 alpha subunit, PsbE [Energy production and conversion]; ...
 1-82 5.12e-60

Photosystem II cytochrome b559 alpha subunit, PsbE [Energy production and conversion]; Photosystem II cytochrome b559 alpha subunit, PsbE is part of the Pathway/BioSystem: Photosystem II


:

Pssm-ID: 444430  Cd Length: 83  Bit Score: 177.21  E-value: 5.12e-60
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497074833  1 MSGSTGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPNEYYPQPRQELPIVNNRYEAKQQVEEFI 80
Cdd:COG5720   1 MAGTTGERPFGDIITSIRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPDEYYTQQRQELPIVSDRFEAKQQIDEFT 80


                ..
gi 497074833 81 GK 82
Cdd:COG5720  81 QK 82
 
Name Accession Description Interval E-value
PsbE COG5720
Photosystem II cytochrome b559 alpha subunit, PsbE [Energy production and conversion]; ...
 1-82 5.12e-60

Photosystem II cytochrome b559 alpha subunit, PsbE [Energy production and conversion]; Photosystem II cytochrome b559 alpha subunit, PsbE is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444430  Cd Length: 83  Bit Score: 177.21  E-value: 5.12e-60
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497074833  1 MSGSTGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPNEYYPQPRQELPIVNNRYEAKQQVEEFI 80
Cdd:COG5720   1 MAGTTGERPFGDIITSIRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPDEYYTQQRQELPIVSDRFEAKQQIDEFT 80


                ..
gi 497074833 81 GK 82
Cdd:COG5720  81 QK 82
psbE PRK02557
cytochrome b559 subunit alpha; Provisional
 1-80 1.01e-56

cytochrome b559 subunit alpha; Provisional


Pssm-ID: 179444  Cd Length: 81  Bit Score: 168.70  E-value: 1.01e-56
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497074833  1 MSGSTGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPNEYYPQPRQELPIVNNRYEAKQQVEEFI 80
Cdd:PRK02557  1 MAGSTGERPFFDIITSIRYWVIHAITIPALFIAGWLFVSTGLAYDAFGTPRPDEYFTQSRSKAPIVSDRYEAKQQLDEFL 80
cyt_b559_alpha TIGR01332
cytochrome b559, alpha subunit; This model describes the alpha subunit of cytochrome b559, ...
 2-79 8.43e-51

cytochrome b559, alpha subunit; This model describes the alpha subunit of cytochrome b559, about 83 residues in length. The N-terminal half is homologous to the ~ 40-residue beta subunit. Cytochrome b559 is associated with photosystem II. Sequences scoring between trusted and noise cutoffs are fragments. [Energy metabolism, Photosynthesis]


Pssm-ID: 130399  Cd Length: 80  Bit Score: 153.90  E-value: 8.43e-51
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 497074833   2 SGSTGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPNEYYPQPRQELPIVNNRYEAKQQVEEF 79
Cdd:TIGR01332  1 SGTTGERPFSDIVTSIRYWVIHSITIPMLFIAGWLFVSTGLAYDAFGTPRPNEYFTQTRQELPLLQDRFDANQEIQEF 78
Cytochrom_B559a pfam00284
Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit; This family is the lumenal ...
 42-80 3.31e-25

Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit; This family is the lumenal portion of cytochrome b559 alpha chain, matches to this family should be accompanied by a match to the pfam00283 family also. The Prosite pattern pattern matches the transmembrane region of the cytochrome b559 alpha and beta subunits.


Pssm-ID: 425581  Cd Length: 39  Bit Score: 88.06  E-value: 3.31e-25
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 497074833  42 LAYDVFGTPRPNEYYPQPRQELPIVNNRYEAKQQVEEFI 80
Cdd:pfam00284  1 LAYDVFGTPRPNEYFTQERQELPIVSDRFEAKQQIDEFN 39
 
Name Accession Description Interval E-value
PsbE COG5720
Photosystem II cytochrome b559 alpha subunit, PsbE [Energy production and conversion]; ...
 1-82 5.12e-60

Photosystem II cytochrome b559 alpha subunit, PsbE [Energy production and conversion]; Photosystem II cytochrome b559 alpha subunit, PsbE is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444430  Cd Length: 83  Bit Score: 177.21  E-value: 5.12e-60
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497074833  1 MSGSTGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPNEYYPQPRQELPIVNNRYEAKQQVEEFI 80
Cdd:COG5720   1 MAGTTGERPFGDIITSIRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPDEYYTQQRQELPIVSDRFEAKQQIDEFT 80


                ..
gi 497074833 81 GK 82
Cdd:COG5720  81 QK 82
psbE PRK02557
cytochrome b559 subunit alpha; Provisional
 1-80 1.01e-56

cytochrome b559 subunit alpha; Provisional


Pssm-ID: 179444  Cd Length: 81  Bit Score: 168.70  E-value: 1.01e-56
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497074833  1 MSGSTGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPNEYYPQPRQELPIVNNRYEAKQQVEEFI 80
Cdd:PRK02557  1 MAGSTGERPFFDIITSIRYWVIHAITIPALFIAGWLFVSTGLAYDAFGTPRPDEYFTQSRSKAPIVSDRYEAKQQLDEFL 80
psbE CHL00064
photosystem II protein V
 1-79 9.50e-53

photosystem II protein V


Pssm-ID: 177004  Cd Length: 83  Bit Score: 158.74  E-value: 9.50e-53
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 497074833  1 MSGSTGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPNEYYPQPRQELPIVNNRYEAKQQVEEF 79
Cdd:CHL00064  1 MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQEIPLITGRFDPLEQLDEF 79
cyt_b559_alpha TIGR01332
cytochrome b559, alpha subunit; This model describes the alpha subunit of cytochrome b559, ...
 2-79 8.43e-51

cytochrome b559, alpha subunit; This model describes the alpha subunit of cytochrome b559, about 83 residues in length. The N-terminal half is homologous to the ~ 40-residue beta subunit. Cytochrome b559 is associated with photosystem II. Sequences scoring between trusted and noise cutoffs are fragments. [Energy metabolism, Photosynthesis]


Pssm-ID: 130399  Cd Length: 80  Bit Score: 153.90  E-value: 8.43e-51
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 497074833   2 SGSTGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPNEYYPQPRQELPIVNNRYEAKQQVEEF 79
Cdd:TIGR01332  1 SGTTGERPFSDIVTSIRYWVIHSITIPMLFIAGWLFVSTGLAYDAFGTPRPNEYFTQTRQELPLLQDRFDANQEIQEF 78
Cytochrom_B559a pfam00284
Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit; This family is the lumenal ...
 42-80 3.31e-25

Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit; This family is the lumenal portion of cytochrome b559 alpha chain, matches to this family should be accompanied by a match to the pfam00283 family also. The Prosite pattern pattern matches the transmembrane region of the cytochrome b559 alpha and beta subunits.


Pssm-ID: 425581  Cd Length: 39  Bit Score: 88.06  E-value: 3.31e-25
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 497074833  42 LAYDVFGTPRPNEYYPQPRQELPIVNNRYEAKQQVEEFI 80
Cdd:pfam00284  1 LAYDVFGTPRPNEYFTQERQELPIVSDRFEAKQQIDEFN 39
Cytochrom_B559 pfam00283
Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits;
6-34 2.04e-10

Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits;


Pssm-ID: 425580  Cd Length: 29  Bit Score: 50.49  E-value: 2.04e-10
                         10        20
                 ....*....|....*....|....*....
gi 497074833   6 GERPFSDIITSVRYWVIHSITIPALFIAG 34
Cdd:pfam00283  1 GERPFTYPIFTVRWLAIHALTVPTVFFLG 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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