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Conserved domains on  [gi|556487557|ref|WP_023335290|]
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MULTISPECIES: NAD(P)/FAD-dependent oxidoreductase [Enterobacter]

Protein Classification

NAD(P)/FAD-dependent oxidoreductase( domain architecture ID 11441299)

NAD(P)/FAD-dependent oxidoreductase catalyzes the transfer of electrons from one molecule, the electron donor or reductant, to another molecule, the electron acceptor or oxidant; similar to sulfide:quinone oxidoreductase which catalyzes the oxidation of hydrogen sulfide using quinone as the electron acceptor

EC:  1.6.-.-
Gene Ontology:  GO:0003954|GO:0006116
PubMed:  15590775|28181562

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
18-416 2.55e-154

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


:

Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 441.88  E-value: 2.55e-154
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  18 LELATQLGKKLGrgKKAKITLVDRNHSHLWKPLLHEVATGSLDEGVDALSYLAHARNHHFQFQLGSVVDINRESKTITLA 97
Cdd:COG1252   14 LEAARRLRKKLG--GDAEVTLIDPNPYHLFQPLLPEVAAGTLSPDDIAIPLRELLRRAGVRFIQGEVTGIDPEARTVTLA 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  98 ElrdekgellvpERKLAYDTLVMALGSTSNDFNTPGVKEHCIFLDNPHQARRFHQEMLNLFLKYTsnmgANGKVNIAIVG 177
Cdd:COG1252   92 D-----------GRTLSYDYLVIATGSVTNFFGIPGLAEHALPLKTLEDALALRERLLAAFERAE----RRRLLTIVVVG 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 178 GGATGVELSAELHNAVKQLHSYgyKGLTNEALNVTLVEAGERILPALPPRISGAAHNELTKLGVRVLTQTMVTSADEGGL 257
Cdd:COG1252  157 GGPTGVELAGELAELLRKLLRY--PGIDPDKVRITLVEAGPRILPGLGEKLSEAAEKELEKRGVEVHTGTRVTEVDADGV 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 258 HTKDGEYIKADLMVWAAGIKAPDFMKEIGgLETNRINQLVTEPTLQTTRDPEIFAIGDCASCARPEGGFVPPRAQAAHQM 337
Cdd:COG1252  235 TLEDGEEIPADTVIWAAGVKAPPLLADLG-LPTDRRGRVLVDPTLQVPGHPNVFAIGDCAAVPDPDGKPVPKTAQAAVQQ 313

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 556487557 338 ASLVLHNILAQYKGKPMKAYVYKDHGSLVSLSNFSTVGSLMGnlmrgsMMVEGRIARFVYISLYRMHQIALHGYFKTGL 416
Cdd:COG1252  314 AKVLAKNIAALLRGKPLKPFRYRDKGCLASLGRGAAVADVGG------LKLSGFLAWLLKRAIHLYFLPGFRGRLRVLL 386
 
Name Accession Description Interval E-value
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
18-416 2.55e-154

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 441.88  E-value: 2.55e-154
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  18 LELATQLGKKLGrgKKAKITLVDRNHSHLWKPLLHEVATGSLDEGVDALSYLAHARNHHFQFQLGSVVDINRESKTITLA 97
Cdd:COG1252   14 LEAARRLRKKLG--GDAEVTLIDPNPYHLFQPLLPEVAAGTLSPDDIAIPLRELLRRAGVRFIQGEVTGIDPEARTVTLA 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  98 ElrdekgellvpERKLAYDTLVMALGSTSNDFNTPGVKEHCIFLDNPHQARRFHQEMLNLFLKYTsnmgANGKVNIAIVG 177
Cdd:COG1252   92 D-----------GRTLSYDYLVIATGSVTNFFGIPGLAEHALPLKTLEDALALRERLLAAFERAE----RRRLLTIVVVG 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 178 GGATGVELSAELHNAVKQLHSYgyKGLTNEALNVTLVEAGERILPALPPRISGAAHNELTKLGVRVLTQTMVTSADEGGL 257
Cdd:COG1252  157 GGPTGVELAGELAELLRKLLRY--PGIDPDKVRITLVEAGPRILPGLGEKLSEAAEKELEKRGVEVHTGTRVTEVDADGV 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 258 HTKDGEYIKADLMVWAAGIKAPDFMKEIGgLETNRINQLVTEPTLQTTRDPEIFAIGDCASCARPEGGFVPPRAQAAHQM 337
Cdd:COG1252  235 TLEDGEEIPADTVIWAAGVKAPPLLADLG-LPTDRRGRVLVDPTLQVPGHPNVFAIGDCAAVPDPDGKPVPKTAQAAVQQ 313

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 556487557 338 ASLVLHNILAQYKGKPMKAYVYKDHGSLVSLSNFSTVGSLMGnlmrgsMMVEGRIARFVYISLYRMHQIALHGYFKTGL 416
Cdd:COG1252  314 AKVLAKNIAALLRGKPLKPFRYRDKGCLASLGRGAAVADVGG------LKLSGFLAWLLKRAIHLYFLPGFRGRLRVLL 386
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 30-338 3.44e-57

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 190.22  E-value: 3.44e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557   30 RGKKAKITLV-DRNHSHLWKPLLHEVATGSLDEGVDAL---SYLAHARNHHFQFQLG-------SVVDINRESKTITLAE 98
Cdd:pfam07992  20 AQLGGKVTLIeDEGTCPYGGCVLSKALLGAAEAPEIASlwaDLYKRKEEVVKKLNNGievllgtEVVSIDPGAKKVVLEE 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557   99 LRDEKGEllvperKLAYDTLVMALGSTSNDFNTPGVKEHCIFL-DNPHQARRFHQEMLNLflkytsnmgangkvNIAIVG 177
Cdd:pfam07992 100 LVDGDGE------TITYDRLVIATGARPRLPPIPGVELNVGFLvRTLDSAEALRLKLLPK--------------RVVVVG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  178 GGATGVELSAELHNAVKQlhsygykgltnealnVTLVEAGERILPALPPRISGAAHNELTKLGVRVLTQTMVTSADEGG- 256
Cdd:pfam07992 160 GGYIGVELAAALAKLGKE---------------VTLIEALDRLLRAFDEEISAALEKALEKNGVEVRLGTSVKEIIGDGd 224

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  257 ---LHTKDGEYIKADLMVWAAGIKAPDFMKEIGGLETNRINQLVTEPTLQTTrDPEIFAIGDCascarpeGGFVPPRAQA 333
Cdd:pfam07992 225 gveVILKDGTEIDADLVVVAIGRRPNTELLEAAGLELDERGGIVVDEYLRTS-VPGIYAAGDC-------RVGGPELAQN 296


                  ....*
gi 556487557  334 AHQMA 338
Cdd:pfam07992 297 AVAQG 301
PTZ00318 PTZ00318
NADH dehydrogenase-like protein; Provisional
 32-401 1.15e-47

NADH dehydrogenase-like protein; Provisional


Pssm-ID: 185553 [Multi-domain]  Cd Length: 424  Bit Score: 168.79  E-value: 1.15e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  32 KKAKITLVD-RNHsHLWKPLLHEVATGSLD-----EGVDalSYLAHARNHHFQfqlGSVVDINRESKTITLAELRDEKGE 105
Cdd:PTZ00318  32 KKYNITVISpRNH-MLFTPLLPQTTTGTLEfrsicEPVR--PALAKLPNRYLR---AVVYDVDFEEKRVKCGVVSKSNNA 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 106 LlVPERKLAYDTLVMALGSTSNDFNTPGVKEHCIFLDNPHQAR----RFHQEMLNLFLKYTSNMGANGKVNIAIVGGGAT 181
Cdd:PTZ00318 106 N-VNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARgirkRIVQCIERASLPTTSVEERKRLLHFVVVGGGPT 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 182 GVELSAELHNAVKQLHSYGYKGLTNEAlNVTLVEAGERILPALPPRISGAAHNELTKLGVRVLTQTMVTSADEGGLHTKD 261
Cdd:PTZ00318 185 GVEFAAELADFFRDDVRNLNPELVEEC-KVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLDKEVVLKD 263

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 262 GEYIKADLMVWAAGIKAPDFMKEIGGLETNRINQLVTEpTLQTTRDPEIFAIGDCASCarpEGGFVPPRAQAAHQMASLV 341
Cdd:PTZ00318 264 GEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDD-HLRVKPIPNVFALGDCAAN---EERPLPTLAQVASQQGVYL 339

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 556487557 342 LHNILAQYKGKPM-KAYVYKDHGSLVSLSNFSTVGSLmgnlmrGSMMVEGRIARFVYISLY 401
Cdd:PTZ00318 340 AKEFNNELKGKPMsKPFVYRSLGSLAYLGNYSAIVQL------GAFDLSGFKALLFWRSAY 394
Nterm_to_SelD TIGR03169
pyridine nucleotide-disulfide oxidoreductase family protein; Members of this protein family ...
 78-391 1.39e-41

pyridine nucleotide-disulfide oxidoreductase family protein; Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.


Pssm-ID: 274465  Cd Length: 364  Bit Score: 150.82  E-value: 1.39e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557   78 QFQLGSVVDINRESKTITLAELRDekgellvperkLAYDTLVMALGSTSNDFNTPGVKEHCI-------FLDNPHQarrf 150
Cdd:TIGR03169  70 RLILDRAIGLDLAAKQVICAGRPP-----------IAYDVLSIDIGSTPALPDVPGFAEHAIpakplgqFAQRWQR---- 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  151 hqemlnlflkYTSNMGANGKVNIAIVGGGATGVELSAELHNAVKQLHSygykgltneALNVTLVEAGERILPALPPRISG 230
Cdd:TIGR03169 135 ----------FLERAKPQQPPRIAVIGGGAAGVELALAMAHRLRQLGR---------NAEVTLIDRGNVLLPGHNARVRR 195

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  231 AAHNELTKLGVRVLTQTMVTSADEGGLHTKDGEYIKADLMVWAAGIKAPDFMKEIGgLETNRINQLVTEPTLQTTRDPEI 310
Cdd:TIGR03169 196 RLERALQERGVTLHLGATVAEVTADAVRLEDGQTLPADFTFWATGARPPGWLAESG-LALDEDGFIRVGPTLQSLSHPDI 274

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  311 FAIGDCAScarpeggFVP-PRAQA---AHQMASLVLHNILAQYKGKPMKAY-VYKDHGSLVSLSNFSTVGSlmgnlmRGS 385
Cdd:TIGR03169 275 FAAGDCAH-------LVHaPRPKAgvfAVRQAPVLAENLRAALTGGPLRPYrPQSDYLKLISTGDKSAVAS------RGG 341


                  ....*.
gi 556487557  386 MMVEGR 391
Cdd:TIGR03169 342 LAFSGA 347
 
Name Accession Description Interval E-value
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
18-416 2.55e-154

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 441.88  E-value: 2.55e-154
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  18 LELATQLGKKLGrgKKAKITLVDRNHSHLWKPLLHEVATGSLDEGVDALSYLAHARNHHFQFQLGSVVDINRESKTITLA 97
Cdd:COG1252   14 LEAARRLRKKLG--GDAEVTLIDPNPYHLFQPLLPEVAAGTLSPDDIAIPLRELLRRAGVRFIQGEVTGIDPEARTVTLA 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  98 ElrdekgellvpERKLAYDTLVMALGSTSNDFNTPGVKEHCIFLDNPHQARRFHQEMLNLFLKYTsnmgANGKVNIAIVG 177
Cdd:COG1252   92 D-----------GRTLSYDYLVIATGSVTNFFGIPGLAEHALPLKTLEDALALRERLLAAFERAE----RRRLLTIVVVG 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 178 GGATGVELSAELHNAVKQLHSYgyKGLTNEALNVTLVEAGERILPALPPRISGAAHNELTKLGVRVLTQTMVTSADEGGL 257
Cdd:COG1252  157 GGPTGVELAGELAELLRKLLRY--PGIDPDKVRITLVEAGPRILPGLGEKLSEAAEKELEKRGVEVHTGTRVTEVDADGV 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 258 HTKDGEYIKADLMVWAAGIKAPDFMKEIGgLETNRINQLVTEPTLQTTRDPEIFAIGDCASCARPEGGFVPPRAQAAHQM 337
Cdd:COG1252  235 TLEDGEEIPADTVIWAAGVKAPPLLADLG-LPTDRRGRVLVDPTLQVPGHPNVFAIGDCAAVPDPDGKPVPKTAQAAVQQ 313

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 556487557 338 ASLVLHNILAQYKGKPMKAYVYKDHGSLVSLSNFSTVGSLMGnlmrgsMMVEGRIARFVYISLYRMHQIALHGYFKTGL 416
Cdd:COG1252  314 AKVLAKNIAALLRGKPLKPFRYRDKGCLASLGRGAAVADVGG------LKLSGFLAWLLKRAIHLYFLPGFRGRLRVLL 386
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 30-338 3.44e-57

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 190.22  E-value: 3.44e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557   30 RGKKAKITLV-DRNHSHLWKPLLHEVATGSLDEGVDAL---SYLAHARNHHFQFQLG-------SVVDINRESKTITLAE 98
Cdd:pfam07992  20 AQLGGKVTLIeDEGTCPYGGCVLSKALLGAAEAPEIASlwaDLYKRKEEVVKKLNNGievllgtEVVSIDPGAKKVVLEE 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557   99 LRDEKGEllvperKLAYDTLVMALGSTSNDFNTPGVKEHCIFL-DNPHQARRFHQEMLNLflkytsnmgangkvNIAIVG 177
Cdd:pfam07992 100 LVDGDGE------TITYDRLVIATGARPRLPPIPGVELNVGFLvRTLDSAEALRLKLLPK--------------RVVVVG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  178 GGATGVELSAELHNAVKQlhsygykgltnealnVTLVEAGERILPALPPRISGAAHNELTKLGVRVLTQTMVTSADEGG- 256
Cdd:pfam07992 160 GGYIGVELAAALAKLGKE---------------VTLIEALDRLLRAFDEEISAALEKALEKNGVEVRLGTSVKEIIGDGd 224

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  257 ---LHTKDGEYIKADLMVWAAGIKAPDFMKEIGGLETNRINQLVTEPTLQTTrDPEIFAIGDCascarpeGGFVPPRAQA 333
Cdd:pfam07992 225 gveVILKDGTEIDADLVVVAIGRRPNTELLEAAGLELDERGGIVVDEYLRTS-VPGIYAAGDC-------RVGGPELAQN 296


                  ....*
gi 556487557  334 AHQMA 338
Cdd:pfam07992 297 AVAQG 301
PTZ00318 PTZ00318
NADH dehydrogenase-like protein; Provisional
 32-401 1.15e-47

NADH dehydrogenase-like protein; Provisional


Pssm-ID: 185553 [Multi-domain]  Cd Length: 424  Bit Score: 168.79  E-value: 1.15e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  32 KKAKITLVD-RNHsHLWKPLLHEVATGSLD-----EGVDalSYLAHARNHHFQfqlGSVVDINRESKTITLAELRDEKGE 105
Cdd:PTZ00318  32 KKYNITVISpRNH-MLFTPLLPQTTTGTLEfrsicEPVR--PALAKLPNRYLR---AVVYDVDFEEKRVKCGVVSKSNNA 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 106 LlVPERKLAYDTLVMALGSTSNDFNTPGVKEHCIFLDNPHQAR----RFHQEMLNLFLKYTSNMGANGKVNIAIVGGGAT 181
Cdd:PTZ00318 106 N-VNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARgirkRIVQCIERASLPTTSVEERKRLLHFVVVGGGPT 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 182 GVELSAELHNAVKQLHSYGYKGLTNEAlNVTLVEAGERILPALPPRISGAAHNELTKLGVRVLTQTMVTSADEGGLHTKD 261
Cdd:PTZ00318 185 GVEFAAELADFFRDDVRNLNPELVEEC-KVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLDKEVVLKD 263

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 262 GEYIKADLMVWAAGIKAPDFMKEIGGLETNRINQLVTEpTLQTTRDPEIFAIGDCASCarpEGGFVPPRAQAAHQMASLV 341
Cdd:PTZ00318 264 GEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDD-HLRVKPIPNVFALGDCAAN---EERPLPTLAQVASQQGVYL 339

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 556487557 342 LHNILAQYKGKPM-KAYVYKDHGSLVSLSNFSTVGSLmgnlmrGSMMVEGRIARFVYISLY 401
Cdd:PTZ00318 340 AKEFNNELKGKPMsKPFVYRSLGSLAYLGNYSAIVQL------GAFDLSGFKALLFWRSAY 394
Nterm_to_SelD TIGR03169
pyridine nucleotide-disulfide oxidoreductase family protein; Members of this protein family ...
 78-391 1.39e-41

pyridine nucleotide-disulfide oxidoreductase family protein; Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.


Pssm-ID: 274465  Cd Length: 364  Bit Score: 150.82  E-value: 1.39e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557   78 QFQLGSVVDINRESKTITLAELRDekgellvperkLAYDTLVMALGSTSNDFNTPGVKEHCI-------FLDNPHQarrf 150
Cdd:TIGR03169  70 RLILDRAIGLDLAAKQVICAGRPP-----------IAYDVLSIDIGSTPALPDVPGFAEHAIpakplgqFAQRWQR---- 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  151 hqemlnlflkYTSNMGANGKVNIAIVGGGATGVELSAELHNAVKQLHSygykgltneALNVTLVEAGERILPALPPRISG 230
Cdd:TIGR03169 135 ----------FLERAKPQQPPRIAVIGGGAAGVELALAMAHRLRQLGR---------NAEVTLIDRGNVLLPGHNARVRR 195

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  231 AAHNELTKLGVRVLTQTMVTSADEGGLHTKDGEYIKADLMVWAAGIKAPDFMKEIGgLETNRINQLVTEPTLQTTRDPEI 310
Cdd:TIGR03169 196 RLERALQERGVTLHLGATVAEVTADAVRLEDGQTLPADFTFWATGARPPGWLAESG-LALDEDGFIRVGPTLQSLSHPDI 274

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  311 FAIGDCAScarpeggFVP-PRAQA---AHQMASLVLHNILAQYKGKPMKAY-VYKDHGSLVSLSNFSTVGSlmgnlmRGS 385
Cdd:TIGR03169 275 FAAGDCAH-------LVHaPRPKAgvfAVRQAPVLAENLRAALTGGPLRPYrPQSDYLKLISTGDKSAVAS------RGG 341


                  ....*.
gi 556487557  386 MMVEGR 391
Cdd:TIGR03169 342 LAFSGA 347
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
 30-355 6.68e-37

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 137.25  E-value: 6.68e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  30 RGKKAKITLVDRNHSH------LWKPLLHEVATgsldegVDALSYLAHA--RNHHFQFQLGS-VVDINRESKTITLAElr 100
Cdd:COG0446    2 LGPDAEITVIEKGPHHsyqpcgLPYYVGGGIKD------PEDLLVRTPEsfERKGIDVRTGTeVTAIDPEAKTVTLRD-- 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 101 dekgellvpERKLAYDTLVMALGSTSNDFNTPGVKEHCIF-LDNPHQARRFHQEMLNlflkytsnmgANGKvNIAIVGGG 179
Cdd:COG0446   74 ---------GETLSYDKLVLATGARPRPPPIPGLDLPGVFtLRTLDDADALREALKE----------FKGK-RAVVIGGG 133

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 180 ATGVELSAELHNAvkqlhsygykGLtnealNVTLVEAGERILPALPPRISGAAHNELTKLGVRVLTQTMVTSADEGG--- 256
Cdd:COG0446  134 PIGLELAEALRKR----------GL-----KVTLVERAPRLLGVLDPEMAALLEEELREHGVELRLGETVVAIDGDDkva 198

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 257 LHTKDGEYIKADLMVWAAGIkAPDFmkEIG---GLETNRINQLVTEPTLQtTRDPEIFAIGDCASCARPEGG--FVPPRA 331
Cdd:COG0446  199 VTLTDGEEIPADLVVVAPGV-RPNT--ELAkdaGLALGERGWIKVDETLQ-TSDPDVYAAGDCAEVPHPVTGktVYIPLA 274

                        330       340
                 ....*....|....*....|....
gi 556487557 332 QAAHQMASLVLHNILaqykGKPMK 355
Cdd:COG0446  275 SAANKQGRVAAENIL----GGPAP 294
NirB COG1251
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];
30-354 3.58e-33

NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];


Pssm-ID: 440863 [Multi-domain]  Cd Length: 402  Bit Score: 128.72  E-value: 3.58e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  30 RGKKAKITLVDR-NHSHLWKPLLHEVATGSLDEGVDALSYLAHARNHHFQFQLGS-VVDINRESKTITLAElrdekGEll 107
Cdd:COG1251   23 LDPDGEITVIGAePHPPYNRPPLSKVLAGETDEEDLLLRPADFYEENGIDLRLGTrVTAIDRAARTVTLAD-----GE-- 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 108 vperKLAYDTLVMALGSTSNDFNTPGV-KEHCIFLDNPHQARRFHQEMlnlflkytsnmgANGKvNIAIVGGGATGVELS 186
Cdd:COG1251   96 ----TLPYDKLVLATGSRPRVPPIPGAdLPGVFTLRTLDDADALRAAL------------APGK-RVVVIGGGLIGLEAA 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 187 AELHNAvkqlhsyGYKgltnealnVTLVEAGERILP-ALPPRISGAAHNELTKLGVRVLTQTMVTS--ADEG--GLHTKD 261
Cdd:COG1251  159 AALRKR-------GLE--------VTVVERAPRLLPrQLDEEAGALLQRLLEALGVEVRLGTGVTEieGDDRvtGVRLAD 223

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 262 GEYIKADLMVWAAGIKaP--DFMKEIGgLETNR-InqlVTEPTLQTTrDPEIFAIGDCASCA-RPEGGFVPPRAQAAHQM 337
Cdd:COG1251  224 GEELPADLVVVAIGVR-PntELARAAG-LAVDRgI---VVDDYLRTS-DPDIYAAGDCAEHPgPVYGRRVLELVAPAYEQ 297

                        330       340
                 ....*....|....*....|
gi 556487557 338 ASLVLHNIL---AQYKGKPM 354
Cdd:COG1251  298 ARVAAANLAggpAAYEGSVP 317
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
 173-348 1.52e-19

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 90.53  E-value: 1.52e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 173 IAIVGGGATGVEL-SAelhnavkqLHSYGYKgltnealnVTLVEAGERILPALPPRISGAAHNELTKLGVRVLTQTMVTS 251
Cdd:COG1249  171 LVVIGGGYIGLEFaQI--------FARLGSE--------VTLVERGDRLLPGEDPEISEALEKALEKEGIDILTGAKVTS 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 252 ADEGG----LHTKDG---EYIKADLMVWAAGIKApdFMKEIG----GLETNRINQLVTEPTLQTTrDPEIFAIGDCAsca 320
Cdd:COG1249  235 VEKTGdgvtVTLEDGggeEAVEADKVLVATGRRP--NTDGLGleaaGVELDERGGIKVDEYLRTS-VPGIYAIGDVT--- 308

                        170       180
                 ....*....|....*....|....*...
gi 556487557 321 rpeGGfvPPRAQAAHQMASLVLHNILAQ 348
Cdd:COG1249  309 ---GG--PQLAHVASAEGRVAAENILGK 331
PRK04965 PRK04965
NADH:flavorubredoxin reductase NorW;
84-317 3.53e-17

NADH:flavorubredoxin reductase NorW;


Pssm-ID: 179902 [Multi-domain]  Cd Length: 377  Bit Score: 82.66  E-value: 3.53e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  84 VVDINRESKTITlaelrdekgellVPERKLAYDTLVMALGSTSndFNTPGVKEHCIFLDNPHQARRFHQEMLnlflkyts 163
Cdd:PRK04965  81 VTDIDAEAQVVK------------SQGNQWQYDKLVLATGASA--FVPPIPGRELMLTLNSQQEYRAAETQL-------- 138

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 164 nmgANGKvNIAIVGGGATGVELSAELHNAVKQlhsygykgltnealnVTLVEAGERILPAL-PPRISGAAHNELTKLGVR 242
Cdd:PRK04965 139 ---RDAQ-RVLVVGGGLIGTELAMDLCRAGKA---------------VTLVDNAASLLASLmPPEVSSRLQHRLTEMGVH 199

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 556487557 243 VLTQTMVTSAD--EGGLH--TKDGEYIKADLMVWAAGIKAPDFMKEIGGLETNRinQLVTEPTLQTTrDPEIFAIGDCA 317
Cdd:PRK04965 200 LLLKSQLQGLEktDSGIRatLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNR--GIVVDSYLQTS-APDIYALGDCA 275
nitri_red_nirB TIGR02374
nitrite reductase [NAD(P)H], large subunit; [Central intermediary metabolism, Nitrogen ...
 50-356 4.38e-17

nitrite reductase [NAD(P)H], large subunit; [Central intermediary metabolism, Nitrogen metabolism]


Pssm-ID: 162827 [Multi-domain]  Cd Length: 785  Bit Score: 83.72  E-value: 4.38e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557   50 LLHEVATGSLDEGVDALSYLAHARNHHFQFQLG-SVVDINRESKTITLAElrdekgellvpERKLAYDTLVMALGSTSND 128
Cdd:TIGR02374  42 LLSSVLQGEADLDDITLNSKDWYEKHGITLYTGeTVIQIDTDQKQVITDA-----------GRTLSYDKLILATGSYPFI 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  129 FNTPGV-KEHCifldnpHQARRFH--QEMLNlflkytsnmGANGKVNIAIVGGGATGVELSaelhnavkqlhsygyKGLT 205
Cdd:TIGR02374 111 LPIPGAdKKGV------YVFRTIEdlDAIMA---------MAQRFKKAAVIGGGLLGLEAA---------------VGLQ 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  206 NEALNVTLVEAGERILPALPPRISGAA-HNELTKLGVRVLTQT----MVTSADEGGLHTKDGEYIKADLMVWAAGIKAPD 280
Cdd:TIGR02374 161 NLGMDVSVIHHAPGLMAKQLDQTAGRLlQRELEQKGLTFLLEKdtveIVGATKADRIRFKDGSSLEADLIVMAAGIRPND 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 556487557  281 FMKEIGGLETNRinQLVTEPTLQTTrDPEIFAIGDCASCARPEGGFVPPRAQAAHQMASLVLHNILAQYKGKPMKA 356
Cdd:TIGR02374 241 ELAVSAGIKVNR--GIIVNDSMQTS-DPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVECEEYEGSDLSA 313
PRK09564 PRK09564
coenzyme A disulfide reductase; Reviewed
 84-318 1.46e-12

coenzyme A disulfide reductase; Reviewed


Pssm-ID: 181958 [Multi-domain]  Cd Length: 444  Bit Score: 68.91  E-value: 1.46e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  84 VVDINRESKTITLAELRDEKgellvpERKLAYDTLVMALGSTSNdfnTPGVKEhcIFLDNPHQARRFH--QEMLNLFLKy 161
Cdd:PRK09564  79 VVKVDAKNKTITVKNLKTGS------IFNDTYDKLMIATGARPI---IPPIKN--INLENVYTLKSMEdgLALKELLKD- 146

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 162 tsnmgaNGKVNIAIVGGGATGVELSAELHNAVKqlhsygykgltnealNVTLVEAGERILP-ALPPRISGAAHNELTKLG 240
Cdd:PRK09564 147 ------EEIKNIVIIGAGFIGLEAVEAAKHLGK---------------NVRIIQLEDRILPdSFDKEITDVMEEELRENG 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 241 VRVLTQTMVTSAD-EG---GLHTKDGEYiKADLMVWAAGIK-APDFMKEiGGLETNRINQLVTEPTLQTTrDPEIFAIGD 315
Cdd:PRK09564 206 VELHLNEFVKSLIgEDkveGVVTDKGEY-EADVVIVATGVKpNTEFLED-TGLKTLKNGAIIVDEYGETS-IENIYAAGD 282


                 ...
gi 556487557 316 CAS 318
Cdd:PRK09564 283 CAT 285
PRK06416 PRK06416
dihydrolipoamide dehydrogenase; Reviewed
 173-315 1.76e-12

dihydrolipoamide dehydrogenase; Reviewed


Pssm-ID: 235798 [Multi-domain]  Cd Length: 462  Bit Score: 68.63  E-value: 1.76e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 173 IAIVGGGATGVEL-SAelhnavkqlhsygYKGLTNEalnVTLVEAGERILPALPPRISGAAHNELTKLGVRVLTQTMVTS 251
Cdd:PRK06416 175 LVVIGGGYIGVEFaSA-------------YASLGAE---VTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKK 238

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 556487557 252 ADEGG----LHTKDG---EYIKADLMVWAAGIkAPDfMKEIG----GLETNRiNQLVTEPTLQTTrDPEIFAIGD 315
Cdd:PRK06416 239 VEQTDdgvtVTLEDGgkeETLEADYVLVAVGR-RPN-TENLGleelGVKTDR-GFIEVDEQLRTN-VPNIYAIGD 309
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
 173-316 3.51e-11

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 64.81  E-value: 3.51e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 173 IAIVGGGATGVEL-SAelhnavkqLHSYGYKgltnealnVTLVEAGERILPALPPRISGAAHNELTKlGVRVLTQTMVTS 251
Cdd:PRK06292 172 LAVIGGGVIGLELgQA--------LSRLGVK--------VTVFERGDRILPLEDPEVSKQAQKILSK-EFKIKLGAKVTS 234

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556487557 252 ADEGG-----LHTKDGE--YIKADLMVWAAGIKA--PDFMKEIGGLETNRINQLVTEPTLQTTrDPEIFAIGDC 316
Cdd:PRK06292 235 VEKSGdekveELEKGGKteTIEADYVLVATGRRPntDGLGLENTGIELDERGRPVVDEHTQTS-VPGIYAAGDV 307
Pyr_redox pfam00070
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 172-256 1.07e-10

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 425450 [Multi-domain]  Cd Length: 80  Bit Score: 57.60  E-value: 1.07e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  172 NIAIVGGGATGVELSAELHNAVKQlhsygykgltnealnVTLVEAGERILPALPPRISGAAHNELTKLGVRVLTQTMVTS 251
Cdd:pfam00070   1 RVVVVGGGYIGLELAGALARLGSK---------------VTVVERRDRLLPGFDPEIAKILQEKLEKNGIEFLLNTTVEA 65


                  ....*
gi 556487557  252 ADEGG 256
Cdd:pfam00070  66 IEGNG 70
PRK09754 PRK09754
phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
 99-324 3.39e-10

phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional


Pssm-ID: 170080 [Multi-domain]  Cd Length: 396  Bit Score: 61.48  E-value: 3.39e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  99 LRDEKGELLVPERKLAYDTLVMALGSTSNDFNT-PGVKEHCIFLDNPHQARRFHQEMlnlflkytsnmgANGKvNIAIVG 177
Cdd:PRK09754  85 GRDTRELVLTNGESWHWDQLFIATGAAARPLPLlDALGERCFTLRHAGDAARLREVL------------QPER-SVVIVG 151

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 178 GGATGVELSAElhnavkqlhsygykgLTNEALNVTLVEAGERIL-PALPPRISGAAHNELTKLGVRVLTQTMVTSADEGG 256
Cdd:PRK09754 152 AGTIGLELAAS---------------ATQRRCKVTVIELAATVMgRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGE 216

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 556487557 257 ---LHTKDGEYIKADLMVWAAGIKAPDFMKEIGGLETNriNQLVTEPTLQTTrDPEIFAIGDCASCARPEG 324
Cdd:PRK09754 217 kveLTLQSGETLQADVVIYGIGISANDQLAREANLDTA--NGIVIDEACRTC-DPAIFAGGDVAITRLDNG 284
GltD COG0493
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ...
 79-318 3.51e-08

NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440259 [Multi-domain]  Cd Length: 434  Bit Score: 55.14  E-value: 3.51e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  79 FQLGSVVDinresKTITLAELRDEkgellvperklaYDTLVMALGST-SNDFNTPGvkEHcifLDNPHQArrfhqemlNL 157
Cdd:COG0493  188 FRTNVEVG-----KDITLDELLEE------------FDAVFLATGAGkPRDLGIPG--ED---LKGVHSA--------MD 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 158 FLKYTSNMGAN------GKvNIAIVGGGATGVelsaelhNAVKQLHSYGykgltneALNVTLV----------------- 214
Cdd:COG0493  238 FLTAVNLGEAPdtilavGK-RVVVIGGGNTAM-------DCARTALRLG-------AESVTIVyrrtreempaskeevee 302

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 215 ---EAGERILPALPPRISGAAHNELTklGVRVLTQTMVTSADEGGLHTKDGE----YIKADLMVWAAGIKA-PDFMKEIG 286
Cdd:COG0493  303 aleEGVEFLFLVAPVEIIGDENGRVT--GLECVRMELGEPDESGRRRPVPIEgsefTLPADLVILAIGQTPdPSGLEEEL 380

                        250       260       270
                 ....*....|....*....|....*....|...
gi 556487557 287 GLETNRINQLVTEP-TLQTTRdPEIFAIGDCAS 318
Cdd:COG0493  381 GLELDKRGTIVVDEeTYQTSL-PGVFAGGDAVR 412
PRK06116 PRK06116
glutathione reductase; Validated
 173-316 4.86e-08

glutathione reductase; Validated


Pssm-ID: 235701 [Multi-domain]  Cd Length: 450  Bit Score: 54.78  E-value: 4.86e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 173 IAIVGGGATGVELSAELHnavkqlhsygykGLTNEalnVTLVEAGERILPALPPRISGAAHNELTKLGVRVLTQTMVTS- 251
Cdd:PRK06116 170 VAVVGAGYIAVEFAGVLN------------GLGSE---THLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAv 234

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 556487557 252 --ADEGGL--HTKDGEYIKADLMVWAAGiKAP---DFMKEIGGLETNRINQLVTEpTLQTTRDPEIFAIGDC 316
Cdd:PRK06116 235 ekNADGSLtlTLEDGETLTVDCLIWAIG-REPntdGLGLENAGVKLNEKGYIIVD-EYQNTNVPGIYAVGDV 304
PRK14989 PRK14989
nitrite reductase subunit NirD; Provisional
 75-356 5.78e-08

nitrite reductase subunit NirD; Provisional


Pssm-ID: 184951 [Multi-domain]  Cd Length: 847  Bit Score: 55.12  E-value: 5.78e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  75 HHFQFQLGS-VVDINRESKTItlaelRDEKGellvpeRKLAYDTLVMALGSTSNDFNTPGVKEHCIFLdnphqARRFhqE 153
Cdd:PRK14989  72 HGIKVLVGErAITINRQEKVI-----HSSAG------RTVFYDKLIMATGSYPWIPPIKGSETQDCFV-----YRTI--E 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 154 MLNLfLKYTSNMGANGkvniAIVGGGATGVELSAelhnAVKQLhsygykGLTNEALNVTLVEAGERilpaLPPRISGAAH 233
Cdd:PRK14989 134 DLNA-IEACARRSKRG----AVVGGGLLGLEAAG----ALKNL------GVETHVIEFAPMLMAEQ----LDQMGGEQLR 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 234 NELTKLGVRVLT----QTMVTSADEGG--LHTKDGEYIKADLMVWAAGIKAPDFMKEIGGLETNRINQLVTEPTLQTTrD 307
Cdd:PRK14989 195 RKIESMGVRVHTskntLEIVQEGVEARktMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTS-D 273

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 556487557 308 PEIFAIGDCASCARPEGGFVPPraqaAHQMASLVLHNILAQ---YKGKPMKA 356
Cdd:PRK14989 274 PDIYAIGECASWNNRVFGLVAP----GYKMAQVAVDHLLGSenaFEGADLSA 321
PRK05249 PRK05249
Si-specific NAD(P)(+) transhydrogenase;
173-315 9.03e-07

Si-specific NAD(P)(+) transhydrogenase;


Pssm-ID: 235373 [Multi-domain]  Cd Length: 461  Bit Score: 50.93  E-value: 9.03e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 173 IAIVGGGATGVElsaelhnavkqlhsY-------GYKgltnealnVTLVEAGERILPALPPRISGAAHNELTKLGVRVLT 245
Cdd:PRK05249 178 LIIYGAGVIGCE--------------YasifaalGVK--------VTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRH 235

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 556487557 246 QTMVTS--ADEGG--LHTKDGEYIKADLMVWAAG-IKAPDFMK-EIGGLETNRINQLVTEPTLQTTRdPEIFAIGD 315
Cdd:PRK05249 236 NEEVEKveGGDDGviVHLKSGKKIKADCLLYANGrTGNTDGLNlENAGLEADSRGQLKVNENYQTAV-PHIYAVGD 310
PRK06370 PRK06370
FAD-containing oxidoreductase;
173-316 2.56e-05

FAD-containing oxidoreductase;


Pssm-ID: 235787 [Multi-domain]  Cd Length: 463  Bit Score: 46.35  E-value: 2.56e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 173 IAIVGGGATGVELSaelhnavkqlhsYGYKGLTNEalnVTLVEAGERILPALPPRISGAAHNELTKLGVRVLTQTMVTSA 252
Cdd:PRK06370 174 LVIIGGGYIGLEFA------------QMFRRFGSE---VTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRV 238

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556487557 253 ----DEGGLHTK---DGEYIKADLMVWAAGiKAP---DFMKEIGGLETNRINQLVTEPTLQTTrDPEIFAIGDC 316
Cdd:PRK06370 239 erdgDGIAVGLDcngGAPEITGSHILVAVG-RVPntdDLGLEAAGVETDARGYIKVDDQLRTT-NPGIYAAGDC 310
PRK13512 PRK13512
coenzyme A disulfide reductase; Provisional
 5-358 9.33e-05

coenzyme A disulfide reductase; Provisional


Pssm-ID: 184103 [Multi-domain]  Cd Length: 438  Bit Score: 44.39  E-value: 9.33e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557   5 LKKIVIVGGGAGGLELATQLgKKLgrGKKAKITLV--DRNHSHLWKPLLHevatgSLDEGVDALSYLAHARNHHFQFQLG 82
Cdd:PRK13512   1 MPKIIVVGAVAGGATCASQI-RRL--DKESDIIIFekDRDMSFANCALPY-----YIGEVVEDRKYALAYTPEKFYDRKQ 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557  83 -------SVVDINRESKTITLAELR-DEKGEllvperkLAYDTLVMALGSTSNDFNtpgvkehcifLDNPHQARRFHQEM 154
Cdd:PRK13512  73 itvktyhEVIAINDERQTVTVLNRKtNEQFE-------ESYDKLILSPGASANSLG----------FESDITFTLRNLED 135

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 155 LNLFLKYTSNMGANgkvNIAIVGGGATGVELSAELHnavkqlhsygykgltNEALNVTLVEAGERILPALPPRISGAAHN 234
Cdd:PRK13512 136 TDAIDQFIKANQVD---KALVVGAGYISLEVLENLY---------------ERGLHPTLIHRSDKINKLMDADMNQPILD 197

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 235 ELTKLGVRVLTQTMVTSADEGGLHTKDGEYIKADLMVWAAGIKAPDFMKEIGGLETNRINQLVTEPTLQTTrDPEIFAIG 314
Cdd:PRK13512 198 ELDKREIPYRLNEEIDAINGNEVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETN-VPNIYAIG 276

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*..
gi 556487557 315 DCASCARPEGGfVP---PRAQAAHQMASLVLHNIlAQYKGKPMKAYV 358
Cdd:PRK13512 277 DIITSHYRHVD-LPasvPLAWGAHRAASIVAEQI-AGNDTIEFKGFL 321
TrxB COG0492
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
173-318 1.33e-04

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440258 [Multi-domain]  Cd Length: 305  Bit Score: 43.57  E-value: 1.33e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 173 IAIVGGGATGVELSAElhnavkqlhsygykgLTNEALNVTLVEAGERIlpalpprisGAAHNELTKL----GVRVLTQTM 248
Cdd:COG0492  144 VVVVGGGDSALEEALY---------------LTKFASKVTLIHRRDEL---------RASKILVERLranpKIEVLWNTE 199

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 249 VTSAD-EGGL------HTKDGE--YIKADLMVWAAGIKAP-DFMKEIgGLETNRINQLVTEPTLQTTRdPEIFAIGDCAS 318
Cdd:COG0492  200 VTEIEgDGRVegvtlkNVKTGEekELEVDGVFVAIGLKPNtELLKGL-GLELDEDGYIVVDEDMETSV-PGVFAAGDVRD 277
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
 240-321 4.13e-04

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 42.55  E-value: 4.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 240 GVRVLTQTMVTSADEGGLHTKDGEY--IKADLMVWAAGiKAPD--FMKEIGGLETNRiNQLVTEPTLQTTRDPEIFAIGD 315
Cdd:PRK12771 340 GLRVITVEKMELDEDGRPSPVTGEEetLEADLVVLAIG-QDIDsaGLESVPGVEVGR-GVVQVDPNFMMTGRPGVFAGGD 417


                 ....*.
gi 556487557 316 CASCAR 321
Cdd:PRK12771 418 MVPGPR 423
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
187-325 1.21e-03

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 40.66  E-value: 1.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 187 AELHNAVKQLHSYGYKgltnealnVTLVEAGE--RILPAL-PPRISGAAHNE-----------------LTKLGVRVLTQ 246
Cdd:COG0665  100 AALRAEAEALRALGLP--------VELLDAAElrEREPGLgSPDYAGGLYDPddghvdpaklvralaraARAAGVRIREG 171

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 247 TMVTSADEGG-----LHTKDGEyIKADLMVWAAGIKAPDFMKEIGG---LETNRINQLVTEPTLQTTRDPeifAIGDCAS 318
Cdd:COG0665  172 TPVTGLEREGgrvtgVRTERGT-VRADAVVLAAGAWSARLLPMLGLrlpLRPVRGYVLVTEPLPDLPLRP---VLDDTGV 247


                 ....*..
gi 556487557 319 CARPEGG 325
Cdd:COG0665  248 YLRPTAD 254
TrxB COG0492
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
173-278 2.35e-03

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440258 [Multi-domain]  Cd Length: 305  Bit Score: 39.72  E-value: 2.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 173 IAIVGGGATGveLSAelhnAVkqlhsygYKGLTNeaLNVTLVEAGE---------RI--LPALPPRISGA-----AHNEL 236
Cdd:COG0492    3 VVIIGAGPAG--LTA----AI-------YAARAG--LKTLVIEGGEpggqlattkEIenYPGFPEGISGPelaerLREQA 67

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 556487557 237 TKLGVRVLTqTMVTSADEGG----LHTKDGEYIKADLMVWAAGIKA 278
Cdd:COG0492   68 ERFGAEILL-EEVTSVDKDDgpfrVTTDDGTEYEAKAVIIATGAGP 112
PTZ00058 PTZ00058
glutathione reductase; Provisional
 173-316 2.47e-03

glutathione reductase; Provisional


Pssm-ID: 185420 [Multi-domain]  Cd Length: 561  Bit Score: 39.98  E-value: 2.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556487557 173 IAIVGGGATGVELSaelhNAVKQLhsygykgltneALNVTLVEAGERILPALPPRISGAAHNELTKLGVRVLTQTM---V 249
Cdd:PTZ00058 240 IGIAGSGYIAVELI----NVVNRL-----------GAESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANveeI 304

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 556487557 250 TSADEGGLHT---KDGEYIKADLMVWAAGiKAPDfMKEIG--GLETNRINQLVTEPTLQTTRDPEIFAIGDC 316
Cdd:PTZ00058 305 EKVKEKNLTIylsDGRKYEHFDYVIYCVG-RSPN-TEDLNlkALNIKTPKGYIKVDDNQRTSVKHIYAVGDC 374
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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