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Conserved domains on  [gi|639228213|ref|WP_024563800|]
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GxxExxY protein [Elizabethkingia anophelis]

Protein Classification

GxxExxY protein( domain architecture ID 10024917)

GxxExxY protein belongs to the PD-(D/E)XK nuclease superfamily

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
GxxExxY TIGR04256
GxxExxY protein; Members of this protein family average about 130 residues in length and ...
5-122 9.98e-47

GxxExxY protein; Members of this protein family average about 130 residues in length and include an almost perfectly conserved motif GxxExxY. Members occur in a wide range of prokaryotes, including Proteobacteria, Perrucomicrobia, Cyanobacteria, Bacteriodetes, Archaea, etc.


:

Pssm-ID: 275083  Cd Length: 116  Bit Score: 146.39  E-value: 9.98e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639228213    5 EISNIVFDAGMRIHRKLGVGLYENVYEECLAYELNGRGLLVEKQRDVKIEYEELIIDKAFRIDLLIENKLIIEVKAVSEI 84
Cdd:TIGR04256   1 ELTYKIIGAAYEVHRELGPGLLESVYEEALAIELRKRGLPVERQKPLPVIYKGIVLGEGYRADLLVEDKVIVELKAVEAL 80
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 639228213   85 NDYHSFQLYNYLRLTGLKLGMLLNFHSPLFKngVKRVV 122
Cdd:TIGR04256  81 TPVHEAQLLNYLKLTGLKLGLLINFGVPKLK--IKRIV 116
 
Name Accession Description Interval E-value
GxxExxY TIGR04256
GxxExxY protein; Members of this protein family average about 130 residues in length and ...
5-122 9.98e-47

GxxExxY protein; Members of this protein family average about 130 residues in length and include an almost perfectly conserved motif GxxExxY. Members occur in a wide range of prokaryotes, including Proteobacteria, Perrucomicrobia, Cyanobacteria, Bacteriodetes, Archaea, etc.


Pssm-ID: 275083  Cd Length: 116  Bit Score: 146.39  E-value: 9.98e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639228213    5 EISNIVFDAGMRIHRKLGVGLYENVYEECLAYELNGRGLLVEKQRDVKIEYEELIIDKAFRIDLLIENKLIIEVKAVSEI 84
Cdd:TIGR04256   1 ELTYKIIGAAYEVHRELGPGLLESVYEEALAIELRKRGLPVERQKPLPVIYKGIVLGEGYRADLLVEDKVIVELKAVEAL 80
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 639228213   85 NDYHSFQLYNYLRLTGLKLGMLLNFHSPLFKngVKRVV 122
Cdd:TIGR04256  81 TPVHEAQLLNYLKLTGLKLGLLINFGVPKLK--IKRIV 116
PDDEXK_3 pfam13366
PD-(D/E)XK nuclease superfamily; Members of this family belong to the PD-(D/E)XK nuclease ...
4-121 2.49e-42

PD-(D/E)XK nuclease superfamily; Members of this family belong to the PD-(D/E)XK nuclease superfamily


Pssm-ID: 463858  Cd Length: 117  Bit Score: 135.31  E-value: 2.49e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639228213    4 NEISNIVFDAGMRIHRKLGVGLYENVYEECLAYELNGRGLLVEKQRDVKIEYEELIIDKaFRIDLLIENKLIIEVKAVSE 83
Cdd:pfam13366   1 NDLTYEIIGAAFEVHNTLGPGLLESVYERALAIELEKRGLPVERQVPLPVFYKGELVGE-YRADLLVEDKVIVELKAVEA 79
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 639228213   84 INDYHSFQLYNYLRLTGLKLGMLLNFHSPLFKNGVKRV 121
Cdd:pfam13366  80 LVPVHEAQLLNYLKATGLRLGLLINFGVTLPKLGIKRV 117
 
Name Accession Description Interval E-value
GxxExxY TIGR04256
GxxExxY protein; Members of this protein family average about 130 residues in length and ...
5-122 9.98e-47

GxxExxY protein; Members of this protein family average about 130 residues in length and include an almost perfectly conserved motif GxxExxY. Members occur in a wide range of prokaryotes, including Proteobacteria, Perrucomicrobia, Cyanobacteria, Bacteriodetes, Archaea, etc.


Pssm-ID: 275083  Cd Length: 116  Bit Score: 146.39  E-value: 9.98e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639228213    5 EISNIVFDAGMRIHRKLGVGLYENVYEECLAYELNGRGLLVEKQRDVKIEYEELIIDKAFRIDLLIENKLIIEVKAVSEI 84
Cdd:TIGR04256   1 ELTYKIIGAAYEVHRELGPGLLESVYEEALAIELRKRGLPVERQKPLPVIYKGIVLGEGYRADLLVEDKVIVELKAVEAL 80
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 639228213   85 NDYHSFQLYNYLRLTGLKLGMLLNFHSPLFKngVKRVV 122
Cdd:TIGR04256  81 TPVHEAQLLNYLKLTGLKLGLLINFGVPKLK--IKRIV 116
PDDEXK_3 pfam13366
PD-(D/E)XK nuclease superfamily; Members of this family belong to the PD-(D/E)XK nuclease ...
4-121 2.49e-42

PD-(D/E)XK nuclease superfamily; Members of this family belong to the PD-(D/E)XK nuclease superfamily


Pssm-ID: 463858  Cd Length: 117  Bit Score: 135.31  E-value: 2.49e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639228213    4 NEISNIVFDAGMRIHRKLGVGLYENVYEECLAYELNGRGLLVEKQRDVKIEYEELIIDKaFRIDLLIENKLIIEVKAVSE 83
Cdd:pfam13366   1 NDLTYEIIGAAFEVHNTLGPGLLESVYERALAIELEKRGLPVERQVPLPVFYKGELVGE-YRADLLVEDKVIVELKAVEA 79
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 639228213   84 INDYHSFQLYNYLRLTGLKLGMLLNFHSPLFKNGVKRV 121
Cdd:pfam13366  80 LVPVHEAQLLNYLKATGLRLGLLINFGVTLPKLGIKRV 117
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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