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Conserved domains on  [gi|873903219|ref|WP_048609567|]
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MULTISPECIES: flagellar hook protein FlgE [Vibrio]

Protein Classification

flagellar hook protein FlgE( domain architecture ID 11481483)

flagellar hook protein FlgE functions as a nano-sized universal joint, which is essential for dynamic and efficient bacterial motility and taxis

CATH:  2.60.98.20
Gene Ontology:  GO:0071973
SCOP:  4003129

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flgE PRK05682
flagellar hook protein FlgE; Validated
 1-434 1.37e-161

flagellar hook protein FlgE; Validated


:

Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 461.23  E-value: 1.37e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219   1 MSYVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSNSLFTNaKTTSGGGAQASQVAQQFHEGSSIYTNNPMD 80
Cdd:PRK05682   2 SFNTAVSGLNAASNRLDVIGNNIANANTTGFKSSRAEFADLYANSAGTN-PTQVGSGVKVAGVAQQFSQGSITSTGNSLD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219  81 LRVSGTGFFAVSKDRMVpeinELTRNGAFHLNKDNYMVTANDEFLLGYDVDPNSGEV--LSYAPKPLDIPAEFGKPKQTE 158
Cdd:PRK05682  81 LAISGNGFFVVSNGGNG----FYTRAGAFKLDKNGYLVNAAGYYLQGYPADADGGTPptVGAGLVPLNIPTTALAPKATT 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 159 NIEVGVNLPANGDLKDPaafnyqDADTYNRATSSTVYDSMGQSYKLTTYYLKdqTQPNTWQTYYTMSDENGEKPlnitgg 238
Cdd:PRK05682 157 SGTFQGNLPSTAAFDPT------DPDTYNHSTSLTVYDSLGNSHTLDVYFVK--TGDNTWEVYVYDDGKPVSTT------ 222

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 239 datnATGHVGHTMKFNNDGTLASlnsgqpiNSDPLGAGANPIDLNGADPTQVLKFGLDSSTQFAAPFELTKFDEDGATTG 318
Cdd:PRK05682 223 ----ATGTGTTTLTFDSNGALTT-------TTSPTTFNITGGATNGADGGQTITLDLSGSTQYASGFTVSATTQDGYAPG 291

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 319 FLTKIDFDEYGSVLGTYSNGENVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGDKIWGESNKGSFGSINNGSLEQSNID 398
Cdd:PRK05682 292 TLTGYSIDDDGTVTAVYSNGQTKPLGQIALANFANPDGLTKVGGNVWSATAASGVALIGTAGSGGFGTIQSGALESSNVD 371

                        410       420       430
                 ....*....|....*....|....*....|....*.
gi 873903219 399 MTQELVDLISAQRNFQANSRSLEVHNQLQQNILQIR 434
Cdd:PRK05682 372 LSTELVNMIVAQRNYQANAKTIKTQDQLLQTLVNLR 407
 
Name Accession Description Interval E-value
flgE PRK05682
flagellar hook protein FlgE; Validated
 1-434 1.37e-161

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 461.23  E-value: 1.37e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219   1 MSYVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSNSLFTNaKTTSGGGAQASQVAQQFHEGSSIYTNNPMD 80
Cdd:PRK05682   2 SFNTAVSGLNAASNRLDVIGNNIANANTTGFKSSRAEFADLYANSAGTN-PTQVGSGVKVAGVAQQFSQGSITSTGNSLD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219  81 LRVSGTGFFAVSKDRMVpeinELTRNGAFHLNKDNYMVTANDEFLLGYDVDPNSGEV--LSYAPKPLDIPAEFGKPKQTE 158
Cdd:PRK05682  81 LAISGNGFFVVSNGGNG----FYTRAGAFKLDKNGYLVNAAGYYLQGYPADADGGTPptVGAGLVPLNIPTTALAPKATT 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 159 NIEVGVNLPANGDLKDPaafnyqDADTYNRATSSTVYDSMGQSYKLTTYYLKdqTQPNTWQTYYTMSDENGEKPlnitgg 238
Cdd:PRK05682 157 SGTFQGNLPSTAAFDPT------DPDTYNHSTSLTVYDSLGNSHTLDVYFVK--TGDNTWEVYVYDDGKPVSTT------ 222

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 239 datnATGHVGHTMKFNNDGTLASlnsgqpiNSDPLGAGANPIDLNGADPTQVLKFGLDSSTQFAAPFELTKFDEDGATTG 318
Cdd:PRK05682 223 ----ATGTGTTTLTFDSNGALTT-------TTSPTTFNITGGATNGADGGQTITLDLSGSTQYASGFTVSATTQDGYAPG 291

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 319 FLTKIDFDEYGSVLGTYSNGENVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGDKIWGESNKGSFGSINNGSLEQSNID 398
Cdd:PRK05682 292 TLTGYSIDDDGTVTAVYSNGQTKPLGQIALANFANPDGLTKVGGNVWSATAASGVALIGTAGSGGFGTIQSGALESSNVD 371

                        410       420       430
                 ....*....|....*....|....*....|....*.
gi 873903219 399 MTQELVDLISAQRNFQANSRSLEVHNQLQQNILQIR 434
Cdd:PRK05682 372 LSTELVNMIVAQRNYQANAKTIKTQDQLLQTLVNLR 407
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
1-434 1.14e-142

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 413.41  E-value: 1.14e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219   1 MS-YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSNSLFTNAKTTSGGGAQASQVAQQFHEGSSIYTNNPM 79
Cdd:COG1749    3 MSfNTGVSGLNAASTALDVIGNNIANSNTVGFKSSRAEFADLVAQSLSGANPTQVGGGVRVASVAQIFTQGSLQSTGNAL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219  80 DLRVSGTGFFAVSKDrmvPEINELTRNGAFHLNKDNYMVTANDEFLLGYDVDPNsGEVL--SYAPKPLDIPAEFGKPKQT 157
Cdd:COG1749   83 DLAISGNGFFVVSDS---GGQTYYTRAGSFSLDKDGYLVNSSGLYLQGYPADAD-GTIPdtGGGLEPIQIPTGQLPAKAT 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 158 ENIEVGVNLPANGDLKDpAAFNYQDADTYNRATSSTVYDSMGQSYKLTTYYLKdqTQPNTWQTYYTMSDENgekplnITG 237
Cdd:COG1749  159 TKVTLGGNLPADATVPT-APFDPTDPTTYNFSTSVTVYDSLGNSHTLTLYFTK--TGANTWTVYVTVDGAD------VTG 229

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 238 GDATNATGhvghTMKFNNDGTLASLNSGQP--INSDPLGAGANPIDLNgadptqvlkfgLDSSTQFAAPFELTKFDEDGA 315
Cdd:COG1749  230 GTGATGTG----TLTFDSNGKLTSPTSGGPgtLTLTVNGAAPQTITLD-----------LSGLTQYASSFSVTSLTQDGY 294

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 316 TTGFLTKIDFDEYGSVLGTYSNGENVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGDKIWGESNKGSFGSINNGSLEQS 395
Cdd:COG1749  295 AAGTLTGVSIDDDGVVTATYSNGQTRPLGQIALATFANPQGLQKLGGNLWAETANSGEPLLGTAGTGGLGSIQSGALESS 374

                        410       420       430
                 ....*....|....*....|....*....|....*....
gi 873903219 396 NIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQIR 434
Cdd:COG1749  375 NVDLAEELVNMIVAQRAYQANAKVITTSDEMLQTLVNLK 413
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 1-416 1.79e-51

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 173.21  E-value: 1.79e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219    1 MSYVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSNSLFTNakTTSGGGAQASQVAQQFHEGSSIYTNNPMD 80
Cdd:TIGR03506   2 ALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQSVSGS--GQVGGGVRTSGVATDFSQGSLQSTGNSLD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219   81 LRVSGTGFFAVSKDrmvPEINELTRNGAFHLNKDNYMVTANdefllGYDVdpnsgevlsyapkpldipaefgkpkqteni 160
Cdd:TIGR03506  80 LAISGDGFFVVQTP---DGSEAYTRAGSFKLDADGYLVTSD-----GYPL------------------------------ 121

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219  161 evgvnlpangdlkdpaafnyqdadtynratsstvydsmgqsyklttyylkdqtqpntwqtyytmsdengekplnitggda 240
Cdd:TIGR03506     --------------------------------------------------------------------------------

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219  241 tnatghvghtmkfnndgtlaslnsgqpinsdpLGAGANPIDLNGADptqvlkfgldsstqfaapfeltkfdedgattgfl 320
Cdd:TIGR03506 122 --------------------------------LDWGGGPITLPPDA---------------------------------- 135

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219  321 TKIDFDEYGSVLGTYSNGENVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGDKIWGESNKGSFGSINNGSLEQSNIDMT 400
Cdd:TIGR03506 136 GSVSIGEDGTVSATYSNGQTVELGQIALANFPNPDGLRKEGGNLYSATPGSGAALVGAPGTGGFGTLVSGALEGSNVDLA 215

                         410
                  ....*....|....*.
gi 873903219  401 QELVDLISAQRNFQAN 416
Cdd:TIGR03506 216 EELVNMISAQRAYQAN 231
FlaE pfam07559
Flagellar basal body protein FlaE; This family consists of several bacterial FlaE flagellar ...
 187-314 6.59e-18

Flagellar basal body protein FlaE; This family consists of several bacterial FlaE flagellar proteins. These proteins are part of the flageller basal body rod complex.


Pssm-ID: 429537 [Multi-domain]  Cd Length: 94  Bit Score: 78.60  E-value: 6.59e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219  187 NRATSSTVYDSMGQSYKLTTYYLKDQTQPNTWQTYYTMSDENGekPLNITGGDATNATGHVGHTMKFNNdgtlaslnsgq 266
Cdd:pfam07559   1 NYSTSVTVYDSLGNSHTLTVYFVKTATGPNTWEVYVTVDGEVG--DGDGTAGTASTAGGLMTGTLTFDS----------- 67

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 873903219  267 pinsdplgaganpIDLNgadptqvlkFGLDSSTQFAAPFELTKFDEDG 314
Cdd:pfam07559  68 -------------ITLD---------FGLTGSTQYASAFSVTSLSQDG 93
 
Name Accession Description Interval E-value
flgE PRK05682
flagellar hook protein FlgE; Validated
 1-434 1.37e-161

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 461.23  E-value: 1.37e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219   1 MSYVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSNSLFTNaKTTSGGGAQASQVAQQFHEGSSIYTNNPMD 80
Cdd:PRK05682   2 SFNTAVSGLNAASNRLDVIGNNIANANTTGFKSSRAEFADLYANSAGTN-PTQVGSGVKVAGVAQQFSQGSITSTGNSLD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219  81 LRVSGTGFFAVSKDRMVpeinELTRNGAFHLNKDNYMVTANDEFLLGYDVDPNSGEV--LSYAPKPLDIPAEFGKPKQTE 158
Cdd:PRK05682  81 LAISGNGFFVVSNGGNG----FYTRAGAFKLDKNGYLVNAAGYYLQGYPADADGGTPptVGAGLVPLNIPTTALAPKATT 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 159 NIEVGVNLPANGDLKDPaafnyqDADTYNRATSSTVYDSMGQSYKLTTYYLKdqTQPNTWQTYYTMSDENGEKPlnitgg 238
Cdd:PRK05682 157 SGTFQGNLPSTAAFDPT------DPDTYNHSTSLTVYDSLGNSHTLDVYFVK--TGDNTWEVYVYDDGKPVSTT------ 222

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 239 datnATGHVGHTMKFNNDGTLASlnsgqpiNSDPLGAGANPIDLNGADPTQVLKFGLDSSTQFAAPFELTKFDEDGATTG 318
Cdd:PRK05682 223 ----ATGTGTTTLTFDSNGALTT-------TTSPTTFNITGGATNGADGGQTITLDLSGSTQYASGFTVSATTQDGYAPG 291

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 319 FLTKIDFDEYGSVLGTYSNGENVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGDKIWGESNKGSFGSINNGSLEQSNID 398
Cdd:PRK05682 292 TLTGYSIDDDGTVTAVYSNGQTKPLGQIALANFANPDGLTKVGGNVWSATAASGVALIGTAGSGGFGTIQSGALESSNVD 371

                        410       420       430
                 ....*....|....*....|....*....|....*.
gi 873903219 399 MTQELVDLISAQRNFQANSRSLEVHNQLQQNILQIR 434
Cdd:PRK05682 372 LSTELVNMIVAQRNYQANAKTIKTQDQLLQTLVNLR 407
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
1-434 1.14e-142

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 413.41  E-value: 1.14e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219   1 MS-YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSNSLFTNAKTTSGGGAQASQVAQQFHEGSSIYTNNPM 79
Cdd:COG1749    3 MSfNTGVSGLNAASTALDVIGNNIANSNTVGFKSSRAEFADLVAQSLSGANPTQVGGGVRVASVAQIFTQGSLQSTGNAL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219  80 DLRVSGTGFFAVSKDrmvPEINELTRNGAFHLNKDNYMVTANDEFLLGYDVDPNsGEVL--SYAPKPLDIPAEFGKPKQT 157
Cdd:COG1749   83 DLAISGNGFFVVSDS---GGQTYYTRAGSFSLDKDGYLVNSSGLYLQGYPADAD-GTIPdtGGGLEPIQIPTGQLPAKAT 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 158 ENIEVGVNLPANGDLKDpAAFNYQDADTYNRATSSTVYDSMGQSYKLTTYYLKdqTQPNTWQTYYTMSDENgekplnITG 237
Cdd:COG1749  159 TKVTLGGNLPADATVPT-APFDPTDPTTYNFSTSVTVYDSLGNSHTLTLYFTK--TGANTWTVYVTVDGAD------VTG 229

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 238 GDATNATGhvghTMKFNNDGTLASLNSGQP--INSDPLGAGANPIDLNgadptqvlkfgLDSSTQFAAPFELTKFDEDGA 315
Cdd:COG1749  230 GTGATGTG----TLTFDSNGKLTSPTSGGPgtLTLTVNGAAPQTITLD-----------LSGLTQYASSFSVTSLTQDGY 294

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 316 TTGFLTKIDFDEYGSVLGTYSNGENVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGDKIWGESNKGSFGSINNGSLEQS 395
Cdd:COG1749  295 AAGTLTGVSIDDDGVVTATYSNGQTRPLGQIALATFANPQGLQKLGGNLWAETANSGEPLLGTAGTGGLGSIQSGALESS 374

                        410       420       430
                 ....*....|....*....|....*....|....*....
gi 873903219 396 NIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQIR 434
Cdd:COG1749  375 NVDLAEELVNMIVAQRAYQANAKVITTSDEMLQTLVNLK 413
flgE PRK06803
flagellar basal body protein FlaE;
1-432 4.03e-89

flagellar basal body protein FlaE;


Pssm-ID: 235862 [Multi-domain]  Cd Length: 402  Bit Score: 276.27  E-value: 4.03e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219   1 MSY-VALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSNSlftnakttSGGGAQASQVAQQFHEGSSI-YTNNP 78
Cdd:PRK06803   1 MSFnIALSGLNATTQQLNTISNNIANSSTKGFKGSRTEFSSIYNGG--------QPGGVEVSSVSQNFSKDGSLtYTGRG 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219  79 MDLRVSGTGFFaVSKDRMVPEIneLTRNGAFHLNKDNYMVTANDEFLLGYDVDPN----SGEVLSYAPKPLDIPAefgkp 154
Cdd:PRK06803  73 LDLAISGGGFF-VLKESDGDTA--YTRAGMFRSDVDGYLTDPQGMKLQGYPVDAAgnlqTGNVSDLQVQTASLPA----- 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 155 KQTENIEVGVNLPANGDLKDPAA--FNYQDADTYNRATSSTVYDSMGQSYKLTTYYLKdqTQPNTWQTYYTMsdengekp 232
Cdd:PRK06803 145 KATDQLDFVANLDASVTPIDPSVspFDPTDEKSYNSSTTSTVYDSLGNEHAVTQYFVK--TATNEWAVHYTV-------- 214

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 233 lnitggDATNATGHVGHTMKFNNDGTLASL-NSGQPINSDPLGAGANPIDLNgadptqvlkFGLDSSTQFAAPFELTKFD 311
Cdd:PRK06803 215 ------DGGDVTPPLGHTLQFDDTGALIPGkGSTINLHGTFNPAGASDYDID---------IDYTGSTQYAADFNNSRNK 279

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 312 EDGATTGFLTKIDFDEYGSVLGTYSNGENVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGDKIWGESNKGSFGSINNGS 391
Cdd:PRK06803 280 SNGYTSGELNGVRIEDNGMVYATYTNGQRQLQGQVVLANFANPNGLVTVSNTAWSASNKSGAPILGTPGTGTLGSLTSGA 359

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|.
gi 873903219 392 LEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQ 432
Cdd:PRK06803 360 LEGSNVDITAELVGLMTAQRNYQANAKVISTNDTMQQALFN 400
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 1-416 1.79e-51

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 173.21  E-value: 1.79e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219    1 MSYVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSNSLFTNakTTSGGGAQASQVAQQFHEGSSIYTNNPMD 80
Cdd:TIGR03506   2 ALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQSVSGS--GQVGGGVRTSGVATDFSQGSLQSTGNSLD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219   81 LRVSGTGFFAVSKDrmvPEINELTRNGAFHLNKDNYMVTANdefllGYDVdpnsgevlsyapkpldipaefgkpkqteni 160
Cdd:TIGR03506  80 LAISGDGFFVVQTP---DGSEAYTRAGSFKLDADGYLVTSD-----GYPL------------------------------ 121

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219  161 evgvnlpangdlkdpaafnyqdadtynratsstvydsmgqsyklttyylkdqtqpntwqtyytmsdengekplnitggda 240
Cdd:TIGR03506     --------------------------------------------------------------------------------

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219  241 tnatghvghtmkfnndgtlaslnsgqpinsdpLGAGANPIDLNGADptqvlkfgldsstqfaapfeltkfdedgattgfl 320
Cdd:TIGR03506 122 --------------------------------LDWGGGPITLPPDA---------------------------------- 135

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219  321 TKIDFDEYGSVLGTYSNGENVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGDKIWGESNKGSFGSINNGSLEQSNIDMT 400
Cdd:TIGR03506 136 GSVSIGEDGTVSATYSNGQTVELGQIALANFPNPDGLRKEGGNLYSATPGSGAALVGAPGTGGFGTLVSGALEGSNVDLA 215

                         410
                  ....*....|....*.
gi 873903219  401 QELVDLISAQRNFQAN 416
Cdd:TIGR03506 216 EELVNMISAQRAYQAN 231
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
3-434 1.95e-37

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 136.87  E-value: 1.95e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219   3 YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDV-YSNSLFTNAKTTSGG----------GAQASQVAQQFHEGS 71
Cdd:COG4786    2 YTAASGMLAQQTRLDVISNNLANVNTTGFKRDRAVFEDLlYQLIRRPGAPSSQGTqtpvglqlgtGVRVAATQTDFTQGS 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219  72 SIYTNNPMDLRVSGTGFFAVskdrMVPEINE-LTRNGAFHLNKDNYMVTANdefllGYDVDPNSGEvlsyapkpldipae 150
Cdd:COG4786   82 LQQTGNPLDLAIEGDGFFQV----QTPDGETaYTRDGSFQLDADGQLVTSD-----GYPVLPENGP-------------- 138

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 151 fgkpkqtenievgVNLPANGDlkdpaafnyqdadtynratsstvydsmgqsyklttyylkdqtqpntwqtyytmsdenge 230
Cdd:COG4786  139 -------------ITIPEDAT----------------------------------------------------------- 146

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 231 kplNITggdatnatghvghtmkfnndgtlaslnsgqpINSDplgaganpidlngadptqvlkfgldsstqfaapfeltkf 310
Cdd:COG4786  147 ---SIT-------------------------------ISED--------------------------------------- 153

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 311 dedgattgfltkidfdeyGSVLGTYSNGENVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGDKIWGESNKGSFGSINNG 390
Cdd:COG4786  154 ------------------GTVSVTLADGDGQQVGQLGLVDFANPAGLEKVGDNLFRETAASGAPIVGTPGEDGLGTLRQG 215

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....
gi 873903219 391 SLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQIR 434
Cdd:COG4786  216 YLEGSNVDVVEEMVDMIEAQRAYEANSKVIQTADEMLGKANNLR 259
flgE PRK12637
flagellar hook protein FlgE; Provisional
 5-434 3.87e-34

flagellar hook protein FlgE; Provisional


Pssm-ID: 183641 [Multi-domain]  Cd Length: 473  Bit Score: 132.96  E-value: 3.87e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219   5 ALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSNSlftnaktTSGGGAQASQVAQQFHEGSSIYTNNPMDLRVS 84
Cdd:PRK12637   6 GLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASS-------RVGLGVKVSAINQRFTVGNISTTGGEYDMAID 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219  85 G-TGFFavskdRMVPEINEL--TRNGAFHLNKDNYMVTANDEFLLGYdvdPNSGevLSYAPKPLDIPAEFGKPKQTENIE 161
Cdd:PRK12637  79 GgKGFF-----RLTDQSGGVfySRNGEFMVDKNFYIVNAQGFRLTGY---PAGG--VGAQPVDLQLPQGNIAPQATSTAG 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 162 VGVNLPANGDLKDP--------------AAFNYQDAD------------------------------------------- 184
Cdd:PRK12637 149 LQTNLNANAKVIDPndtpavdgtveldgTTYRFTNAGgtfawvapapldgtynggdiviaggavtgdlasqpgyqpykpl 228

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 185 ------------TYNRATSSTVYDSMGQSYKLTTYYLKDQT--QPNTWQTYYTMSDEngekPLNITGGdatnatghVGHT 250
Cdd:PRK12637 229 vagipfdptnplSYTDQVPTTVYDSLGNSHQMIQYFAKRPAvgTESVYEVYYVLDGQ----PMQVNGG--------ASQT 296

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 251 MKFNNDGTLASLNSGQPINSDPLGAGANPidlngADPTQVlKFGLDSSTQFAAPFElTKFDEDGATTGFLTKIDFDEYGS 330
Cdd:PRK12637 297 LNFDTAGNLLNQPPTAQVTFANPGGNAAP-----ADPLAI-TVSYNGVTQYGSDFA-PKVVQNGYSSGEFMGLSVGKDGS 369

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 331 VLGTYSNGENVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGDKIWGESNKGSFGSINNGSLEQSNIDMTQELVDLISAQ 410
Cdd:PRK12637 370 LVAKYTNGETQTIGTLVLANFNNVQGLQPVGNNAWVETSESGQATLGQPGTNGLATIAGQALEASNVDMSRELVNMIVAQ 449

                        490       500
                 ....*....|....*....|....
gi 873903219 411 RNFQANSRSLEVHNQLQQNILQIR 434
Cdd:PRK12637 450 RTYQANAQTIKTQDEVMQVLMNMR 473
flgE PRK08425
flagellar hook protein FlgE; Validated
 189-434 3.31e-31

flagellar hook protein FlgE; Validated


Pssm-ID: 236263 [Multi-domain]  Cd Length: 731  Bit Score: 126.35  E-value: 3.31e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 189 ATSSTVYDSMGQSYKLTTYYLK---DQTQPNTWQTYYTMSDengekPLNITGGDATNATGHVGHTMKFNNDGTLASLNSg 265
Cdd:PRK08425 491 AASIDIYDSLGSKHTLRIEFYKsstTQDGGAEWNMIIIVPE-----PAEINGGSEGRPNNFEGGRLRFNNDGSLAGMNP- 564

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 266 QPINSDPLgaganpidlNGADPTQV--LKFGLDSS----TQFAAPFELTKFDEDGATTGFLTKIDFDEYGSVLGTYSNGE 339
Cdd:PRK08425 565 PTLQFDPN---------NGAAAPQRinLSFGTSGSfdglTSVDKISETYAIEQDGYTAGDLMDIRFDSDGTILGAFTNGR 635

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 340 NVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGDKIWGESNKGSFGSINNGSLEQSNIDMTQELVDLISAQRNFQANSRS 419
Cdd:PRK08425 636 TFALAQVALANFANNAGLQAEGGNVFSQTANSGQAVIGAAGTGGRGSISGSKLEMSNVDLSRSLTQLIVIQRGFQANSKT 715

                        250
                 ....*....|....*
gi 873903219 420 LEVHNQLQQNILQIR 434
Cdd:PRK08425 716 ITTSDQMLNTLLQLK 730
flgG_G_neg TIGR02488
flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the ...
 3-434 5.45e-24

flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131541 [Multi-domain]  Cd Length: 259  Bit Score: 100.12  E-value: 5.45e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219    3 YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGD-VYSNSLFTNAKTTS-----------GGGAQASQVAQQFHEG 70
Cdd:TIGR02488   3 WTAATGMNAQQTNMDVISNNLANVNTTGFKKDRAEFEDlLYQTERQPGAQSSEqqtilpvgvqvGLGVRVVATQKLFTQG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219   71 SSIYTNNPMDLRVSGTGFFAVskdrMVPE-INELTRNGAFHLNKDNYMVTANdefllGYDVDPNsgevlsyapkpldipa 149
Cdd:TIGR02488  83 SLQNTGNDLDLAIEGEGFFQV----LMPDgTTAYTRDGAFKINAEGQLVTSN-----GYPLQPE---------------- 137

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219  150 efgkpkqtenievgVNLPANgdlkdpaafnyqdadtynrATSSTVydsmgqsyklttyylkdqtqpntwqtyytmsdeng 229
Cdd:TIGR02488 138 --------------ITIPEN-------------------ATSITV----------------------------------- 149

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219  230 ekplnitggdatnatghvghtmkfNNDGTLASLNSGQPinsdplgaganpidlngadptqvlkfgldsstqfaapfeltk 309
Cdd:TIGR02488 150 ------------------------GSDGEVSVRQGGQT------------------------------------------ 163

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219  310 fdedgattgfltkidfdeygsvlgtysngENVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGDKIWGESNKGSFGSINN 389
Cdd:TIGR02488 164 -----------------------------EPQEVGQITLATFINPAGLEAVGENLFRETPASGPPQIGTPGLDGFGKLRQ 214

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*
gi 873903219  390 GSLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQIR 434
Cdd:TIGR02488 215 GFLEASNVNVVQEMVDMITAQRAYEMNSKAIQASDQMLQTVSQLL 259
flgG PRK12693
flagellar basal body rod protein FlgG; Provisional
 3-133 6.01e-23

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183687 [Multi-domain]  Cd Length: 261  Bit Score: 97.24  E-value: 6.01e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219   3 YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDV-YSNSLFTNAKTTS----------GGGAQASQVAQQFHEGS 71
Cdd:PRK12693   6 WIAKTGLDAQQTNIDVISNNLANVNTTGFKKSRAVFEDLlYQTIRQPGAQSSQnttlpsglqvGTGVRPVATQKIFTQGN 85

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 873903219  72 SIYTNNPMDLRVSGTGFFAVskdrMVPEINEL-TRNGAFHLNKDNYMVTANdefllGYDVDPN 133
Cdd:PRK12693  86 LQQTGNSLDVAIEGQGFFQV----QLPDGTIAyTRDGSFKLDQDGQLVTSG-----GYPLQPE 139
flgE PRK05841
flagellar hook protein FlgE; Validated
 5-420 3.02e-22

flagellar hook protein FlgE; Validated


Pssm-ID: 235620 [Multi-domain]  Cd Length: 603  Bit Score: 99.15  E-value: 3.02e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219   5 ALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSNSL-FTNAKTT----SGGGAQASQVAQQFHEGSSIYTNNPM 79
Cdd:PRK05841   8 AYSGIKTHQFGLDSLSNNIANVNTLGYRSNIPEFKTLFSSHLdALNAKSVvandRNYGVTGSSNAISNKDGEYKPSDGEF 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219  80 DLRVSGTGFFAVSKDRMVP-EINE----------LTRNGAFHLNKDNYMVTANDEFLLGYDVDPNSGEVLSYAPK----- 143
Cdd:PRK05841  88 HMAYQGKGWFVVGPNKNGSmTINKdgfskkqdnyFTRDGSFARDADGYLVNPEGYYVYGIDLGKIKDGTLNSTARdeadi 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 144 ---------PLDIPAE-FGKPKQTENIEVGVNLPANGDLKDPAAFNYQ--------------------------DADTYN 187
Cdd:PRK05841 168 eklhgntlsPLQIPQDlTYQPVLTTKVGISVNLNPKDHLKGVQDFFLNdkgefikerflnqdinalanddnepiDAITNR 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 188 RATSSTVYDSmGQSYKLTTYYLKDQTQPNTWQTY----------------------------YTMSDEN-GEKPLNIT-G 237
Cdd:PRK05841 248 KLNITIQKED-GKKEDFVFTYGDAEKGENQFKTLgdlkkllkektgldlnlirsekgaksppLLLEIANpSQTPITFSlS 326

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 238 GDATNATGHVGHTMKFNNDGTLAS------------------------------LNSGQPINSDPLGA----------GA 277
Cdd:PRK05841 327 GGIADKLGLNANGMELKKGISRDSvaikipsysteveiydkagdkyllqseyymTNSGDPTSSPRKNQtwevksyivdPK 406

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 278 NPIDLNGADPTQVLKFGLDSSTQfAAPFELT-----------------------------KFDEDGATTGFLTKIDFDEY 328
Cdd:PRK05841 407 NKTPINTDPTWEIVGFDATHKMK-AAPMTLDfkgnkltysldksedhdssnlsyqdskllEASQDGKPRGILRDVRIDEN 485

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 329 GSVLGTYSNGENVMLGRVGLVRVPNEQGLDKKGGTQWDSTND---------SGDKI--WGESNKGSFGSINNGSLEQSNI 397
Cdd:PRK05841 486 GVISLAFSNGVVEPMGRIGIAAFTNDQGLRKVGGNLFEMQEGtingenrplSGNPIlgWDEEGKLKFGKVRHKYLETSNV 565

                        570       580
                 ....*....|....*....|...
gi 873903219 398 DMTQELVDLISAQRNFQANSRSL 420
Cdd:PRK05841 566 DAGNALTNLILMQRGYSMNARAF 588
FlaE pfam07559
Flagellar basal body protein FlaE; This family consists of several bacterial FlaE flagellar ...
 187-314 6.59e-18

Flagellar basal body protein FlaE; This family consists of several bacterial FlaE flagellar proteins. These proteins are part of the flageller basal body rod complex.


Pssm-ID: 429537 [Multi-domain]  Cd Length: 94  Bit Score: 78.60  E-value: 6.59e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219  187 NRATSSTVYDSMGQSYKLTTYYLKDQTQPNTWQTYYTMSDENGekPLNITGGDATNATGHVGHTMKFNNdgtlaslnsgq 266
Cdd:pfam07559   1 NYSTSVTVYDSLGNSHTLTVYFVKTATGPNTWEVYVTVDGEVG--DGDGTAGTASTAGGLMTGTLTFDS----------- 67

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 873903219  267 pinsdplgaganpIDLNgadptqvlkFGLDSSTQFAAPFELTKFDEDG 314
Cdd:pfam07559  68 -------------ITLD---------FGLTGSTQYASAFSVTSLSQDG 93
flgE_epsilon TIGR02489
flagellar hook protein FlgE, epsilon proteobacterial; Members of this family are flagellar ...
 6-168 9.49e-17

flagellar hook protein FlgE, epsilon proteobacterial; Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the Proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.


Pssm-ID: 131542 [Multi-domain]  Cd Length: 719  Bit Score: 82.69  E-value: 9.49e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219    6 LSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSNSLFTNAKTTSGGGAQ----------ASQVAQQFHEGSSIYT 75
Cdd:TIGR02489   9 VSGMQAHQVALDVEGNNIANVNTTGFKYSRADFGDMLSQTVKIATSPYDGLGGQndlsiglgvsISSTTKIFSQGSVQTT 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219   76 NNPMDLRVSGTGFFAVSKDRMVpeINELTRNGAFHLNKDNYMVTANDEFLLGYDVDPNSGEVLSYApKPLDIPAEFGKPK 155
Cdd:TIGR02489  89 NSKTDVAINGDGFFIVSDDGGL--TNYYTRDGAFKFDAYGNFVNNSGYIVQGWNRPLEAAESGTMS-DWDDQTVDSTRPP 165

                         170
                  ....*....|...
gi 873903219  156 QTENIEVGVNLPA 168
Cdd:TIGR02489 166 QNIFIDPGMVIPA 178
flgG PRK12636
flagellar basal body rod protein FlgG; Provisional
 3-418 1.45e-16

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183640 [Multi-domain]  Cd Length: 263  Bit Score: 79.03  E-value: 1.45e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219   3 YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYS-----------NSLFTNAKTTsGGGAQASQVAQQFHEGS 71
Cdd:PRK12636   6 YSGISGMKNFQTKLDVIGNNIANVNTYGFKKSRVTFKDMVSqtisgasgptaNRGGVNSKQV-GLGSQLGAIDTIHTQGS 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219  72 SIYTNNPMDLRVSGTGFFAV-SKDRMVpeineLTRNGAFHLNKDNYMVTANDEFLLGydvdPNSGevlsyapkPLDIPae 150
Cdd:PRK12636  85 LQTTGRPLDLAISGDGFFRVgDGDNTA-----YTRAGNFYLDNEGNIVNADGLYLLG----MNGG--------RIQIP-- 145

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 151 fgkpkqtenievgvnlpangdlkdpaafnyQDADTYNratsstvydsmgqsyklttyylkdqtqpntwqtyytmsdenge 230
Cdd:PRK12636 146 ------------------------------TDAQSFS------------------------------------------- 152

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 231 kplnitggdatnatghvghtmkfnndgtlaslnsgqpINSDplgaganpidlngadptqvlkfgldsstqfaapfeltkf 310
Cdd:PRK12636 153 -------------------------------------IGAD--------------------------------------- 156

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219 311 dedgattgfltkidfdeyGSVLGTYSNGENVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGDKIWGESNKGSFGSINNG 390
Cdd:PRK12636 157 ------------------GTVSYVDAGGELQTAGQIGLATFANPDGLEKAGDNLYRETLNSGTPSAVVPGEGGTGKIVSG 218

                        410       420
                 ....*....|....*....|....*...
gi 873903219 391 SLEQSNIDMTQELVDLISAQRNFQANSR 418
Cdd:PRK12636 219 ALEMSNVDLAEEFTEMIVAQRGFQANTR 246
flgE PRK08425
flagellar hook protein FlgE; Validated
 7-142 2.15e-15

flagellar hook protein FlgE; Validated


Pssm-ID: 236263 [Multi-domain]  Cd Length: 731  Bit Score: 78.59  E-value: 2.15e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219   7 SGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYS--NSLFTNAKTTSGG--------GAQASQVAQQFHEGSSIYTN 76
Cdd:PRK08425  10 SGLQAHQIAMDVEGNNIANVNTTGFKYSRASFVDMLSqtKLIATAPKGGLGGqndmqiglGVGVSSTTKIFSQGSIQNTD 89

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 873903219  77 NPMDLRVSGTGFFAVSKDRMVpeINELTRNGAFHLNKDNYMVTANDEFLLGYDVDPNSGEVLSYAP 142
Cdd:PRK08425  90 KNTDLAIQGDGFFIVSPDGGT--TRNYTRDGDFKFDAQGNFVNNGGYVVQGWVSDTDTGTIDSTGP 153
flgG PRK12692
flagellar basal body rod protein FlgG; Reviewed
 4-132 5.40e-15

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 139158 [Multi-domain]  Cd Length: 262  Bit Score: 74.50  E-value: 5.40e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219   4 VALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDvysnsLFTNAKTTSGGGAQASQVA----------------QQF 67
Cdd:PRK12692   6 IAATGMSAQQLNLEVIANNIANLNTTGFKGARAEFTD-----LLYQAERQQGVPNQAGQEAvpegamlglgvraaaiRNL 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 873903219  68 H-EGSSIYTNNPMDLRVSGTGFFAVSKDRmvPEINeLTRNGAFHLNKDNYMVTANdefllGYDVDP 132
Cdd:PRK12692  81 HrQGSLAQTGNQLDLAVNGRGYFQVTSPN--GEIQ-YTRAGSFNKNAAGQLVTME-----GYAVDP 138
flgG PRK12816
flagellar basal body rod protein FlgG; Reviewed
 3-133 2.78e-14

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183766 [Multi-domain]  Cd Length: 264  Bit Score: 72.53  E-value: 2.78e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219   3 YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGD-VYSNSLFTNAKTTS----------GGGAQASQVAQQFHEGS 71
Cdd:PRK12816   6 WTAASGMNAQQFNIDTIANNLANVNTTGFKKIRAEFEDlIYQTQRRAGTPATEdtvtplgvqvGHGVKVAATQRLFEQGS 85

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 873903219  72 SIYTNNPMDLRVSGTGFFAVskdRMVPEINELTRNGAFHLNKDNYMVTANdefllGYDVDPN 133
Cdd:PRK12816  86 LQATGNKLDVAIEGEGFFKI---LMPDGTYAYTRDGSFKIDANGQLVTSN-----GYRLLPE 139
flgF PRK12690
flagellar hook-basal body complex protein;
2-149 4.90e-13

flagellar hook-basal body complex protein;


Pssm-ID: 183685 [Multi-domain]  Cd Length: 238  Bit Score: 68.56  E-value: 4.90e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219   2 SYVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDvYSNSLFTNAKTTSGGGAQASQVaqQFHEGSSIYTNNPMDL 81
Cdd:PRK12690   5 GYTTLTRQSGLMREMQVVANNIANASTTGFRREGLVFSE-YVKSLDSGEASLSMARASGRQT--DLEQGGLTQTGGQFDF 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 873903219  82 RVSGTGFFAVSkdrmVPEINELTRNGAFhlnkdnymvTANDEFLLgydVDPNSGEVLSYAPKPLDIPA 149
Cdd:PRK12690  82 AIEGEGFFMVE----TPQGERLTRAGSF---------TPNAEGEL---VDPDGNRLLDAGGAPIFIPP 133
flgG PRK12818
flagellar basal body rod protein FlgG; Reviewed
 3-127 4.28e-12

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183768 [Multi-domain]  Cd Length: 256  Bit Score: 65.88  E-value: 4.28e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219   3 YVALSGLSAAQLDLNTTSNNIANANTFGFKE---SRAEFGDV----YSNSLF-TNAKTTSGG---GAQASQVAQQFHEGS 71
Cdd:PRK12818   6 YTAVSGMITLEAKQDVITNNLANVNTVGYKSdnlAFKSFEDVlienYDKKVGnKNVKNIIGGlsmGSKIDEVNTLFTQGI 85

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 873903219  72 SIYTNNPMDLRVSGTGFFAVSKDrmvPEINELTRNGAFHLNKDNYMVTANDEFLLG 127
Cdd:PRK12818  86 IKSTDKPTDFAIQGRGFFTVERN---AGNNYYTRDGHFHVDTQGYLVNDSGYYVLG 138
flgF PRK12642
flagellar basal-body rod protein FlgF;
3-137 4.92e-12

flagellar basal-body rod protein FlgF;


Pssm-ID: 237153 [Multi-domain]  Cd Length: 241  Bit Score: 65.45  E-value: 4.92e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219   3 YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSNSLFTNAKTTSGGGAQASQVAqqfheGSSIYTNNPMDLR 82
Cdd:PRK12642   6 YVALSSQMALEKRLDTIADNVANVNTVGFRATEVKFDTVVSDTASKKVAFVSQGKSYLSTEA-----GPLTKTGNPLDFA 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 873903219  83 VSGTGFFAVSkdrmVPEINELTRNGAFHLNKDNYMVTANdefllGYDV----------DPNSGEV 137
Cdd:PRK12642  81 VKGDAWFSFD----TPAGQVYTRDGRFTMTSTGELVSVT-----GYPVldaggapiqlNPGGGEP 136
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 355-433 5.63e-12

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 61.13  E-value: 5.63e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 873903219  355 QGLDKKGGTQWDSTNdsGDKIWGEsnkGSFGSINNGSLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQI 433
Cdd:pfam06429   1 AGLEKGGDNLFRETD--GAPILGA---GADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 3-127 1.80e-11

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 63.72  E-value: 1.80e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219   3 YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAE------FGDVYSNSLFtnakttsgggAQASQVAQQFHEGSSIYTN 76
Cdd:PRK12640   6 YTAMSGASQNLNQQAVVANNLANASTPGFRADLAQaravpvFGEGLPTRVF----------ALASTPGADFSPGPLQTTG 75

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 873903219  77 NPMDLRVSGTGFFAVskdrMVPEINE-LTRNGAFHLNKDNYMVTANDEFLLG 127
Cdd:PRK12640  76 RPLDVALQGDGWLAV----QAPDGSEaYTRNGSLQVDANGQLRTANGLPVLG 123
flgF TIGR02490
flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several ...
 322-414 1.02e-10

flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274160 [Multi-domain]  Cd Length: 89  Bit Score: 58.02  E-value: 1.02e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219  322 KIDFDEYGSVlgtYSNGENVmlGRVGLVRVPNEQGLDKKGGTQWDSTNDsgdkiwGESNKGSFGSINNGSLEQSNIDMTQ 401
Cdd:TIGR02490   8 DITIGADGTI---SQDGEEV--GRLGLVNFDNPNQLQREGDGLFRATGG------GPAPADSNVRVVQGYLEGSNVNAVS 76

                          90
                  ....*....|...
gi 873903219  402 ELVDLISAQRNFQ 414
Cdd:TIGR02490  77 EMVDMIEAQRAYE 89
flgF PRK12689
flagellar basal-body rod protein FlgF;
4-127 2.08e-10

flagellar basal-body rod protein FlgF;


Pssm-ID: 183684 [Multi-domain]  Cd Length: 253  Bit Score: 60.92  E-value: 2.08e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219   4 VALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDvYSNSLfTNAKTTSGGGAQASQVAQQ-----FHEGSSIYTNNP 78
Cdd:PRK12689   7 VGLSRQMALERQLDVVANNVANVNTNGFKARSSLFQE-YLMPG-AHEDNFQRPDRRVSYVQDRgtpldLSQGPLEQTKNP 84

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 873903219  79 MDLRVSGTGFFAVSkdrmVPEINELTRNGAFHLNKDNYMVTANDEFLLG 127
Cdd:PRK12689  85 LDVAIDGDAFLAVQ----TPQGERYTRDGALEINAQGQLVTSDGYPVLG 129
flgG PRK12817
flagellar basal body rod protein FlgG; Reviewed
 7-146 4.33e-09

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183767 [Multi-domain]  Cd Length: 260  Bit Score: 57.01  E-value: 4.33e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219   7 SGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSNSL-------FTNAKTTSGGGAQASQVAQQFHEGSSIYTNNPM 79
Cdd:PRK12817  10 SGMNAQQEKLDSISNNLANVNTTGYKREDVSFSDLVYETLdrkgyptNDKPEIITGTGVKATNWIRDNQQGNLLTTGNKT 89

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 873903219  80 DLRVSGTGFFAVSKdrmvPEINEL-TRNGAFHLNKDNYMVTANDEFLlgyDVDPNSGEVLSYAPKPLD 146
Cdd:PRK12817  90 DLAIDGEGFFRVIM----ADGTYAyTRAGNFNIDSNGMLVDDNGNRL---EIQLEAGVGINNRNTGFD 150
FlgK COG1256
Flagellar hook-associated protein FlgK [Cell motility];
3-69 9.31e-07

Flagellar hook-associated protein FlgK [Cell motility];


Pssm-ID: 440868 [Multi-domain]  Cd Length: 479  Bit Score: 51.03  E-value: 9.31e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 873903219   3 YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGdvySNSLFTNAKTTSGGGAQASQVAQQFHE 69
Cdd:COG1256    7 NIALSGLNAAQRALDVTSHNIANANTPGYSRQRVVLS---AAGPTATGAGQVGTGVRVTGIRRIRDE 70
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
389-433 1.58e-06

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 47.03  E-value: 1.58e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 873903219 389 NGSLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQI 433
Cdd:COG1558   89 DGYVRYPNVNVVEEMVDMISASRSYEANVEVINTAKSMLLKTLEI 133
flgG PRK12819
flagellar basal-body rod protein FlgG;
3-127 1.79e-06

flagellar basal-body rod protein FlgG;


Pssm-ID: 183769 [Multi-domain]  Cd Length: 257  Bit Score: 49.11  E-value: 1.79e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219   3 YVALSGLSAAQLDLNTTSNNIANANTFGFKesraefGDVYSNSLFTNAKTTSGGGAQASQVAQ------------QFHEG 70
Cdd:PRK12819   5 YIGSMGMMNYMQRINVHSNNVANAQTTGFK------AENMTSKVFDVQDTYRRGDGAVTNIGSvdyavvpaathvNLVQG 78

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 873903219  71 SSIYTNNPMDLRVS-----GTGFFAVSKDRMVpeinELTRNGAFHLNKDNYMVTANDEFLLG 127
Cdd:PRK12819  79 NIQMTNSDTDFFLDdgpagTSSFFVTSKNGET----FLTRDGSFTLNSDRYLQTASGAFVMG 136
Flg_bb_rod pfam00460
Flagella basal body rod protein;
3-31 2.72e-06

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 43.71  E-value: 2.72e-06
                          10        20
                  ....*....|....*....|....*....
gi 873903219    3 YVALSGLSAAQLDLNTTSNNIANANTFGF 31
Cdd:pfam00460   2 YTAVSALNAQQIRLDVIANNIANANTPGY 30
flgG PRK12817
flagellar basal body rod protein FlgG; Reviewed
 386-434 6.10e-06

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183767 [Multi-domain]  Cd Length: 260  Bit Score: 47.38  E-value: 6.10e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 873903219 386 SINNGSLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQIR 434
Cdd:PRK12817 211 DILQGYLENSNVDLGKEMTDMIITQRAFQLSSKGIKTADEMWGIINNMR 259
flgK PRK08147
flagellar hook-associated protein FlgK; Validated
 5-69 3.55e-05

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236165 [Multi-domain]  Cd Length: 547  Bit Score: 45.82  E-value: 3.55e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 873903219   5 ALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDvysnslfTNAKTTSGG----GAQASQVAQQFHE 69
Cdd:PRK08147   8 AMSGLNAAQAALNTVSNNISNYNVAGYTRQTTILAQ-------AGSTLTAGGwignGVYVSGVQREYDA 69
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 4-42 4.90e-05

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 42.89  E-value: 4.90e-05
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 873903219   4 VALSGLSAAQLDLNTTSNNIANANTfgfkeSRAEFGDVY 42
Cdd:PRK05681   9 IAGSGLSAQSQRLNVISSNIANADS-----TAAPDGDPY 42
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 389-433 8.15e-05

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 42.12  E-value: 8.15e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 873903219 389 NGSLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQI 433
Cdd:PRK05681  88 KGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQKTLTI 132
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
4-65 1.45e-04

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 41.64  E-value: 1.45e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 873903219   4 VALSGLSAAQLDLNTTSNNIANANTfgfkeSRAEFGDVY--SNSLFTNAKTTSGGGAQASQVAQ 65
Cdd:COG1558    9 IAGSGLTAQRLRLNVIASNLANANS-----TRTSDGGPYrrKQVVFEAVLDRAGSGAAGVRVAG 67
flgK_ends TIGR02492
flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of ...
 3-66 2.22e-04

flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274162 [Multi-domain]  Cd Length: 323  Bit Score: 43.10  E-value: 2.22e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 873903219    3 YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGdvySNSLFTNAKTTSGGGAQASQVAQQ 66
Cdd:TIGR02492   4 NIAKSGLSASQIALSVTSNNIANANTPGYSRQRAVLT---AVPAGGQGGKQIGTGVKVTSIRRI 64
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 389-433 2.62e-04

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 40.80  E-value: 2.62e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 873903219  389 NGSLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQI 433
Cdd:TIGR01395  89 EGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMFLRTLEI 133
flgF PRK12641
flagellar basal-body rod protein FlgF;
20-125 3.62e-04

flagellar basal-body rod protein FlgF;


Pssm-ID: 105809 [Multi-domain]  Cd Length: 252  Bit Score: 41.85  E-value: 3.62e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219  20 SNNIANANTFGFKESRAEFgdvysnSLFTNAKTTSGGGAQASQVAQQFHEGSSIYTNNPMDLRVSGTGFFAVSKDrmvPE 99
Cdd:PRK12641  23 ANNLANISTTGFKEKFILA------IQNHNVKNLYNSDKKITKEYYNLSPGTLRYTGRNLDLFIKDNGWLTIKDT---NG 93

                         90       100
                 ....*....|....*....|....*.
gi 873903219 100 INELTRNGAFHLNKDNYMVTANDEFL 125
Cdd:PRK12641  94 QEAYTKNGHLKINSKRKLTVQNNEVI 119
flgK PRK07191
flagellar hook-associated protein FlgK; Validated
 1-63 4.44e-04

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 180871 [Multi-domain]  Cd Length: 456  Bit Score: 42.50  E-value: 4.44e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 873903219   1 MSYVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGdvySNSLFTNAKTTSGGGAQASQV 63
Cdd:PRK07191   3 FIRTAFSGMQAAQAHLNATSMNIANMHTPGYSRQGVEQS---AIGADGQGGVNAGNGVNVDGI 62
flgK PRK07739
flagellar hook-associated protein FlgK; Validated
 5-38 5.80e-04

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236084 [Multi-domain]  Cd Length: 507  Bit Score: 41.92  E-value: 5.80e-04
                         10        20        30
                 ....*....|....*....|....*....|....
gi 873903219   5 ALSGLSAAQLDLNTTSNNIANANTFGFKESRAEF 38
Cdd:PRK07739  11 ARRGLFAQQAALYVTGHNIANANTPGYTRQRVNL 44
flgK PRK05683
flagellar hook-associated protein FlgK; Validated
 4-31 7.24e-04

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 235558 [Multi-domain]  Cd Length: 676  Bit Score: 42.02  E-value: 7.24e-04
                         10        20
                 ....*....|....*....|....*...
gi 873903219   4 VALSGLSAAQLDLNTTSNNIANANTFGF 31
Cdd:PRK05683   6 IGLSGLGASQTALAVTGNNIANVDTAGY 33
flgG PRK12819
flagellar basal-body rod protein FlgG;
385-418 8.98e-04

flagellar basal-body rod protein FlgG;


Pssm-ID: 183769 [Multi-domain]  Cd Length: 257  Bit Score: 41.02  E-value: 8.98e-04
                         10        20        30
                 ....*....|....*....|....*....|....
gi 873903219 385 GSINNGSLEQSNIDMTQELVDLISAQRNFQANSR 418
Cdd:PRK12819 206 GIVKNGMLENSNVDMTKEMADLMTDQRMIQASQR 239
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 4-42 9.38e-04

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 39.26  E-value: 9.38e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 873903219    4 VALSGLSAAQLDLNTTSNNIANANTFgfkesRAEFGDVY 42
Cdd:TIGR01395   6 VSASALSAQRVRMNVVSSNLANADST-----RTPAGDPY 39
flgK PRK06945
flagellar hook-associated protein FlgK; Validated
 4-69 1.03e-03

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 235895 [Multi-domain]  Cd Length: 651  Bit Score: 41.54  E-value: 1.03e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 873903219   4 VALSGLSAAQLDLNTTSNNIANANTFGFKESR---AEFGDVYSNSLFTnakttsGGGAQASQVAQQFHE 69
Cdd:PRK06945   7 IGLSGLNAAQWGLTTTGHNISNAATPGYSRQRvvqAEAGGQYTGSGYL------GQGVNVVTVKRQYSQ 69
flgF PRK12643
flagellar basal body rod protein FlgF; Reviewed
 1-150 1.54e-03

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 139117 [Multi-domain]  Cd Length: 209  Bit Score: 39.83  E-value: 1.54e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903219   1 MSYVALSGLSAAQLDLN---TTSNNIANANTFGFKESRAEFGDVYSN--SLFTNAK-TTSGGGAQASQvaqqfheGSSIY 74
Cdd:PRK12643   1 MDHAIYTAMGAARQSLElqaVTANNLANASTPGFRAQLAAMRAVPIDgpSLATRTMvTTSTPGVDISQ-------GTMNF 73

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 873903219  75 TNNPMDLRVSGTGFFAVSkdrmVPEINE-LTRNGafhlnkdNYMVTANDEFLL-GYDVDPNSGevlsyapkPLDIPAE 150
Cdd:PRK12643  74 SGRPLDVALQQDGYLAVQ----LPDGSEaYTRNG-------NIQISANGQMTVqGYPLMGDNG--------PIDVPPQ 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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