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Conserved domains on  [gi|1172480970|ref|WP_080853733|]
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MULTISPECIES: ABC transporter permease [Agrobacterium]

Protein Classification

ABC transporter permease( domain architecture ID 11439530)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0140359|GO:0042626|GO:0016020
PubMed:  18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 27-260 9.17e-68

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


:

Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 210.74  E-value: 9.17e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  27 IIVILSGLNAGDYLTFPPQGFSLRWVYAFLTSPTFLSAYGVSFLVAGISTAISTVLGTMAALFLTRSSSRLVAPLRAFFM 106
Cdd:COG1177    25 LVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLL 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 107 MPIVLPGVVLGLALYVFYVTtgIGLARSMTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLK 186
Cdd:COG1177   105 LPLVVPGIVLGVALLLLFSA--LGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLP 182

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1172480970 187 IISPAISAGTIFAFIISFGQFEVTLFLSTPNLQTLPMAMYVALRYAFEPTAAAAGIFAILLVVVSMVATSRLIN 260
Cdd:COG1177   183 LIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTLLILLSLLLLLLAERLRR 256
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 27-260 9.17e-68

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 210.74  E-value: 9.17e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  27 IIVILSGLNAGDYLTFPPQGFSLRWVYAFLTSPTFLSAYGVSFLVAGISTAISTVLGTMAALFLTRSSSRLVAPLRAFFM 106
Cdd:COG1177    25 LVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLL 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 107 MPIVLPGVVLGLALYVFYVTtgIGLARSMTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLK 186
Cdd:COG1177   105 LPLVVPGIVLGVALLLLFSA--LGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLP 182

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1172480970 187 IISPAISAGTIFAFIISFGQFEVTLFLSTPNLQTLPMAMYVALRYAFEPTAAAAGIFAILLVVVSMVATSRLIN 260
Cdd:COG1177   183 LIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTLLILLSLLLLLLAERLRR 256
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 27-264 2.32e-27

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 105.84  E-value: 2.32e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  27 IIVILSGLNAGDYlTFPPQGFSLRWVYAFLTSPTFLSAYGVSFLVAGISTAISTVLGTMAALFLTRSSSRLVAPLRAFFM 106
Cdd:PRK09500   22 IILIVNSFNSSRF-GINWKGFTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLF 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 107 MPIVLPGVVLGLALYVFYVTTGIGLArsMTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLK 186
Cdd:PRK09500  101 VVMMSPDIVMAISLLVLFMLLGIQLG--FWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILP 178

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1172480970 187 IISPAISAGTIFAFIISFGQFEVTLFLSTPNLQTLPMAMYVALRYAFEPTAAAAGifAILLVV-VSMVATSRLINLKRI 264
Cdd:PRK09500  179 LALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEILPLKIYSMVKVGVSPEVNALA--TILLVLsLVLVILSQLLARDKT 255
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 45-253 2.39e-20

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 87.41  E-value: 2.39e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  45 QGFSLRW--VYAFLTSPTFLSAYGVSFLVAGISTAISTVLGTMAALFLTRSSSRLVAPLRAFFMMPIVLPGVVLGLALYV 122
Cdd:TIGR00969  40 QAFSKGLgqFWQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIDLPFALSPVVAGLTLAL 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 123 FYVTTG----------IGLARSMTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLKIISPAI 192
Cdd:TIGR00969 120 LYGSNGwlgswlasfgIQIIFTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWAL 199

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1172480970 193 SAGTIFAFIISFGQFEVTLFLS---TPNLQTLPMAMYVALRYAFEPTAAAAGIFAILLVVVSMV 253
Cdd:TIGR00969 200 LYGVVLTFARALGEFGAVVVVSgniPGKTLTLPLLIEERLEQYDYPGAYVIAAVLLLVSLVTLF 263
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 65-251 2.82e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 66.53  E-value: 2.82e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  65 YGVSFLVAGISTAISTVLGTMAALFLTRSSSRLVAPLRAFFMMPIVLPGVVLGLALYVFYVTTGIGLARSMTGL--IIGH 142
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLpaLILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 143 VIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLKIISPAISAGTIFAFIISFGQFEVTLFLSTPNLQTLP 222
Cdd:cd06261    81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                         170       180
                  ....*....|....*....|....*....
gi 1172480970 223 MAMYVALRYAFEPTAAAAGIFAILLVVVS 251
Cdd:cd06261   161 TGLLLIFAILFPGDLGVAAAVALILLLLS 189
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 79-260 4.08e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 46.14  E-value: 4.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  79 STVLGTMAALFLTRSSSRLvapLRAFFMMPIVLPGVVLGLALYVFYVTTGIGLArsMTGLIIGHVIVTCPFVIATVTAAL 158
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRL---LRPLIDLLQALPSFVLAILLVVIAILSILGHG--ILPAIILALLGWAGYARLIRRAAL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 159 VGFDRSLEEAARSLGASPFTAFRLVTLKIISPAISAGTIFAFIISFGQFEVTLFL-STPNLQTLPMAMYVALRYAFEPTA 237
Cdd:pfam00528  76 RSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgSWPGLGLLLIEAILGYDYPEIQGP 155

                         170       180
                  ....*....|....*....|...
gi 1172480970 238 AAAGIFAILLVVVSMVATSRLIN 260
Cdd:pfam00528 156 VLAAALILLLLNLLVDILQRLLD 178
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 27-260 9.17e-68

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 210.74  E-value: 9.17e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  27 IIVILSGLNAGDYLTFPPQGFSLRWVYAFLTSPTFLSAYGVSFLVAGISTAISTVLGTMAALFLTRSSSRLVAPLRAFFM 106
Cdd:COG1177    25 LVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLL 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 107 MPIVLPGVVLGLALYVFYVTtgIGLARSMTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLK 186
Cdd:COG1177   105 LPLVVPGIVLGVALLLLFSA--LGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLP 182

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1172480970 187 IISPAISAGTIFAFIISFGQFEVTLFLSTPNLQTLPMAMYVALRYAFEPTAAAAGIFAILLVVVSMVATSRLIN 260
Cdd:COG1177   183 LIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTLLILLSLLLLLLAERLRR 256
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
41-259 1.59e-36

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 135.67  E-value: 1.59e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  41 TFPPQGFSLRWVYAFLTSPTFLSAYGVSFLVAGISTAISTVLGTMAALFLTRSSSRLVAPLRAFFMMPIVLPGVVLGLAL 120
Cdd:COG1178   316 KALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGL 395

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 121 YVFYV-TTGIGLARSMTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLKIISPAISAGTIFA 199
Cdd:COG1178   396 LLLFNrPLPLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLV 475

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 200 FIISFGQFEVTLFLSTPNLQTLPMAMYVALRYAFEPTAAAAGIFAILLVVVSMVATSRLI 259
Cdd:COG1178   476 FVTSMKELSATLLLRPPGFETLAVLIYQLASSGRYGEAAALALLLVLVSLLPVLLLERLL 535
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 27-267 1.01e-33

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 123.72  E-value: 1.01e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  27 IIVILSGLNAGDYLTFPPQGFSLRWVYAFLTSPTFLSAYGVSFLVAGISTAISTVLGTMAALFLTRSSSRLVAPLRAFFM 106
Cdd:COG1176    31 LLLLVYSFTTRDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVI 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 107 MPIVLPGVVLGLALYVFYVTTGI---------------GLARSMTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARS 171
Cdd:COG1176   111 LPFWTSFLVRTYAWIVLLGRNGLlnslllalglideplRLLYTEFAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARD 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 172 LGASPFTAFRLVTLKIISPAISAGTIFAFIISFGQFEVTLFLSTPNLQTLPMAMYVALRYAFE-PTAAAAGIFAILLVVV 250
Cdd:COG1176   191 LGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQQFLSALNwPLAAALAVVLLLIVLL 270

                         250
                  ....*....|....*..
gi 1172480970 251 SMVATSRLINLKRIFGG 267
Cdd:COG1176   271 VLLLYLRLLRRRRLLGG 287
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 52-259 2.33e-29

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 111.38  E-value: 2.33e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  52 VYAFLTSPTFLSAYGVSFLVAGISTAISTVLGTMAALFLTRSSSRLVAPLRAFFMMPIVLPGVVLGLALYVFYVTT---- 127
Cdd:COG0555    43 FWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNgwlg 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 128 ------GIGLARSMTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLKIISPAISAGTIFAFI 201
Cdd:COG0555   123 qllaplGIKVAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFA 202

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1172480970 202 ISFGQFEVTLFLS--TPNL-QTLPMAMYVALRYaFEPTAAAAGIFAILLVVVSMVATSRLI 259
Cdd:COG0555   203 RALGEFGAVIFIAgnLPMKtEILPLLIYLKLEE-GDYAGATAIALVLLLISFLLLLLINLL 262
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 27-264 2.32e-27

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 105.84  E-value: 2.32e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  27 IIVILSGLNAGDYlTFPPQGFSLRWVYAFLTSPTFLSAYGVSFLVAGISTAISTVLGTMAALFLTRSSSRLVAPLRAFFM 106
Cdd:PRK09500   22 IILIVNSFNSSRF-GINWKGFTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLF 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 107 MPIVLPGVVLGLALYVFYVTTGIGLArsMTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLK 186
Cdd:PRK09500  101 VVMMSPDIVMAISLLVLFMLLGIQLG--FWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILP 178

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1172480970 187 IISPAISAGTIFAFIISFGQFEVTLFLSTPNLQTLPMAMYVALRYAFEPTAAAAGifAILLVV-VSMVATSRLINLKRI 264
Cdd:PRK09500  179 LALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEILPLKIYSMVKVGVSPEVNALA--TILLVLsLVLVILSQLLARDKT 255
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
49-266 9.44e-27

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 108.32  E-value: 9.44e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  49 LRWVYAFLTSPTFLSAYGVSFLVAGISTAISTVLGTMAALFLTRSSSRLVAPLRAFFMMPIVLPGVVLGLALYVFYVTTG 128
Cdd:COG1178    40 LANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNG 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 129 I---------GLA----RSMTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLKIISPAISAG 195
Cdd:COG1178   120 LlntllralfGLEppdiYGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAG 199

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1172480970 196 TIFAFIISFGQFEVTLFLSTpNLQTLPMAMYVALRYAFEPTAAAAGIFAILLVVVSMVATSRLINLKRIFG 266
Cdd:COG1178   200 ALLVFLLCLADFGTPLVLGG-GYTTLTTAIYQAWLGDFDLGAAAALALVLLLLVLLLLLLERRLRRRRRYA 269
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 40-250 8.36e-24

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 97.09  E-value: 8.36e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  40 LTFPPQGFSLRWVYAFLTSPTFLSAYGVSFLVAGISTAISTVLGTMAALFLTRSSSRLVAPLRAFFMMPIVLPGVVLGLA 119
Cdd:COG0395    51 PSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIP 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 120 LYVFYVttGIGLARSMTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLKIISPAISAGTIFA 199
Cdd:COG0395   131 LYLLFR--QLGLLNTYWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFT 208

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1172480970 200 FIISFGQFEVTL-FLSTPNLQTLP--MAMYVALRYAFEPTAAAAGIFAILLVVV 250
Cdd:COG0395   209 FIGAWNDFLWPLiLLTSPDLRTLPvgLASFQGQYGTDWGLLMAAAVIATLPVLI 262
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 45-253 5.88e-23

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 94.92  E-value: 5.88e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  45 QGFSLRWVYAFLTSPTFLSAYGVSFLVAGISTAISTVLGTMAALFLTRSSSRLVAPLRAFFMM-PIVLPGVVLGLALYVF 123
Cdd:PRK10592   45 AGWSTRWYGELFRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVMVRFGRFRGSNGFAFMITaPLVMPDVITGLSLLLL 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 124 YVTTGIGLA----RSMTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLKIISPAISAGTIFA 199
Cdd:PRK10592  125 FVALAHAIGwpadRGMLTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLA 204

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1172480970 200 FIISFGQFEVTLFLSTPNLQTLPMAMYVALRYAFEPTAAAagIFAILLVVVSMV 253
Cdd:PRK10592  205 FTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNPEINA--LATLILGVVGIV 256
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 45-253 2.39e-20

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 87.41  E-value: 2.39e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  45 QGFSLRW--VYAFLTSPTFLSAYGVSFLVAGISTAISTVLGTMAALFLTRSSSRLVAPLRAFFMMPIVLPGVVLGLALYV 122
Cdd:TIGR00969  40 QAFSKGLgqFWQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIDLPFALSPVVAGLTLAL 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 123 FYVTTG----------IGLARSMTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLKIISPAI 192
Cdd:TIGR00969 120 LYGSNGwlgswlasfgIQIIFTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWAL 199

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1172480970 193 SAGTIFAFIISFGQFEVTLFLS---TPNLQTLPMAMYVALRYAFEPTAAAAGIFAILLVVVSMV 253
Cdd:TIGR00969 200 LYGVVLTFARALGEFGAVVVVSgniPGKTLTLPLLIEERLEQYDYPGAYVIAAVLLLVSLVTLF 263
modB PRK09421
molybdate ABC transporter permease subunit;
55-254 1.49e-19

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 84.59  E-value: 1.49e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  55 FLTSPTFLSAYGVSFLVAGISTAISTVLGTMAALFLTRSSSRLVAPLRAFFMMPIVLPGVVLGLALYV-----------F 123
Cdd:PRK09421    1 MILSDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLIsmgrrgfigqwL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 124 YVTTGIGLARSMTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLKIISPAISAGTIFAFIIS 203
Cdd:PRK09421   81 YEWFGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARS 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1172480970 204 FGQFEVTL-FLST-PN-LQTLPMAMYVALRyafEPTA-AAAGIFAILLVVVSMVA 254
Cdd:PRK09421  161 LGEFGATItFVSNiPGeTQTIPSAMYTLIQ---TPGGeSAAARLCIISIAIALAS 212
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
54-253 2.33e-17

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 79.79  E-value: 2.33e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  54 AFLTSPTFLSAYGVSFLVAGISTAISTVLGTMAALFLTRSSsRLVAPLRAFFMMPIVLPGVVLGLALYVFY--------- 124
Cdd:COG1175    67 RLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNRKL-RGRGFFRTLFFLPWVISPVVVALIWKWLFnpdygllna 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 125 VTTGIGLAR---------SMTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLKIISPAISAG 195
Cdd:COG1175   146 LLGALGLEPinwlgdpslALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFV 225

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1172480970 196 TIFAFIISFGQFEV--TLFLSTPNLQTLPMAMYVaLRYAFE-----PTAAAAGIFAILLVVVSMV 253
Cdd:COG1175   226 LVLSTIGALQVFDLvyVLTGGGPGNSTTTLVLYI-YQTAFQqfdfgYASAIAVVLFLIILVLTLL 289
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 56-214 3.42e-17

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 78.91  E-value: 3.42e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  56 LTSPTFLSAYGVSFLVAGISTAISTVLGTMAALFLTRSSSRLVAPLRAFFMMPIVLPGVVLGLALYVFYVTTG------- 128
Cdd:TIGR02139  43 ITEPRVLAAYKLSFGTALIAALINAVFGTLLAWVLVRYRFPGKRIVDALVDLPFALPTAVAGIALATLYSPNGwigsfla 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 129 ---IGLARSMTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLKIISPAISAGTIFAFIISFG 205
Cdd:TIGR02139 123 plgIKIAFTPLGIVIALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWRVILPALLPALLTGFALAFARAVG 202


                  ....*....
gi 1172480970 206 QFEVTLFLS 214
Cdd:TIGR02139 203 EYGSVIFIA 211
cysT CHL00187
sulfate transport protein; Provisional
 52-207 1.26e-16

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 76.59  E-value: 1.26e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  52 VYAFLTSPTFLSAYGVSFLVAGISTAISTVLGTMAALFLTRSSSRLVAPLRAFFMMPIVLPGVVLGLALYVFYVTTG--- 128
Cdd:CHL00187   44 FLQKATEPIALSAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGwig 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 129 -------IGLARSMTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLKIISPAISAGTIFAFI 201
Cdd:CHL00187  124 hllshlgIQIVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFS 203


                  ....*.
gi 1172480970 202 ISFGQF 207
Cdd:CHL00187  204 RAIGEY 209
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 43-260 2.02e-16

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 76.97  E-value: 2.02e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  43 PPQGFSLRWVYAFLTSPTFLSAYGVSFLVAGISTAISTVLGTMAAL---FLTRSSSRLVAPLRAFFmmpIVLPGVVLGLA 119
Cdd:PRK15050   53 GEHGLGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVLGVLLALvlaFVPFPGASLVGRFIDTF---VAFPSFLITLA 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 120 LYVFYVTTG---IGLAR-------------SMTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLV 183
Cdd:PRK15050  130 FTFLYGSAGsvnIALQRlfgleappldflySPGGVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRV 209

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1172480970 184 TLKIISPAISAGTIFAFIISFGQFEVTLFLSTPNLQTLPMAMYVALRYAFEPTAAAAGIFAILLVVVSMVATSRLIN 260
Cdd:PRK15050  210 ILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAKDVVTLPVLIYSKAIVDFDYPTACAIAVVNLALSLGLYALYRRVN 286
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
53-214 8.17e-16

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 75.18  E-value: 8.17e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  53 YAFLTSPTFLSAYGVSFLVAGISTAISTVLGTMAALFLTRSSSRLVAPLRAFFMMPIVLPGVVLGLALYVFYVTTG---- 128
Cdd:PRK10971   48 WEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGwyge 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 129 ------IGLARSMTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLKIISPAISAGTIFAFII 202
Cdd:PRK10971  128 wlakfdIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTR 207

                         170
                  ....*....|..
gi 1172480970 203 SFGQFEVTLFLS 214
Cdd:PRK10971  208 SLGEFGAVIFIA 219
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 29-254 3.78e-15

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 73.26  E-value: 3.78e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  29 VILSGLNAGDYL---TFPPQGFSLR-WVYAFLTSPtFLSAYGVSFLVAGISTAISTVLGTMAALFLtrssSRLVAPLRAF 104
Cdd:COG3833    36 VVSASFNPGGSLyssSLIPENFTLEnYKKLFTETP-FLRWFLNSLIVAVVTAIISVFLAALAAYAF----SRFRFKGRKA 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 105 FMMPIVL----PGVVLGLALYVFYVTtgIGLARSMTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAF 180
Cdd:COG3833   111 GLLALLLlqmfPAFLALVALYLLLSA--LGLLNTLLGLILVYLGGAIPFNTWLMKGYFDTIPKELDEAAKIDGASHFQIF 188

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1172480970 181 RLVTLKIISPAISAGTIFAFIISFGQFEV-TLFLSTPNLQTLPMAMYV----ALRYAFEPTAAAAGIFAILLVVVSMVA 254
Cdd:COG3833   189 FRIILPLAKPILAVVALLSFIGPWNDFILaSVLLRSPENYTLAVGLYSfvsdQRNTNWGVFAAGAVLVAIPIVILFLFL 267
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 65-251 2.82e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 66.53  E-value: 2.82e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  65 YGVSFLVAGISTAISTVLGTMAALFLTRSSSRLVAPLRAFFMMPIVLPGVVLGLALYVFYVTTGIGLARSMTGL--IIGH 142
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLpaLILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 143 VIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLKIISPAISAGTIFAFIISFGQFEVTLFLSTPNLQTLP 222
Cdd:cd06261    81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                         170       180
                  ....*....|....*....|....*....
gi 1172480970 223 MAMYVALRYAFEPTAAAAGIFAILLVVVS 251
Cdd:cd06261   161 TGLLLIFAILFPGDLGVAAAVALILLLLS 189
COG4132 COG4132
ABC-type uncharacterized transport system, permease component [General function prediction ...
 53-259 6.97e-11

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443307 [Multi-domain]  Cd Length: 286  Bit Score: 60.97  E-value: 6.97e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  53 YAFLTSPTFLSAYGVSFLVAGISTAISTVLGTMAALFLTRS-SSRLVAPLRAFFMMPIVLPGVVLGLA----------LY 121
Cdd:COG4132    53 YAELTSPFYLQAFWNSIWLSLASALIGAVIGLLLAYALRRGgPGWLRRAVLAFSGVASNFAGVPLAFAfiatlgrnglVT 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 122 VFYVTTGIGLAR-----SMTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLKIISPAISAGT 196
Cdd:COG4132   133 LLLKQLGIDLYDgfnlySFWGLILVYLYFQIPLMVLLLYPALDGLRREWREAAALLGASRWQYWRRVALPVLAPSLLGTF 212

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1172480970 197 IFAFIISFGQFEVTLFLSTPNLQTLPMAMYVALR---YAFEPTAAAAGIFAILLVVVSMVATSRLI 259
Cdd:COG4132   213 LLLFANAFGAYATAYALTGGNYNLVPIRIGALISgdvLLDPNLGAALALGMIVIMALVMALYQWLQ 278
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 54-209 1.74e-10

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 60.85  E-value: 1.74e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  54 AFLTSPTFLSAYGVSFLVAGISTAISTVLGTMAALFLTRSSSRLVAPLRAFFMMPIVLPGVVLGLALyvFYVTTGIGLAR 133
Cdd:TIGR03262  45 EYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISL--IYLFGNQGLLK 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 134 SM---------TGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLKIISPAISAGTIFAFIISF 204
Cdd:TIGR03262 123 GLlggfsiygfWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVI 202


                  ....*
gi 1172480970 205 GQFEV 209
Cdd:TIGR03262 203 TDFGV 207
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 29-226 1.11e-09

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 58.31  E-value: 1.11e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  29 VILSGLNAgdyltfppqgfSLRWVyafLTSPTFLSAYGVSFLVAGISTAISTVLgTMAALFLTRSSSRLVAPLRAFF--- 105
Cdd:PRK09433  299 VVVSGLNA-----------SLLRV---LAQPALWQALWTSLRIALAAALLAVVL-TMMLLWSSRELRLRQRKLAAQAlel 363

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 106 --MMPIVLPGVVLGLALYVfyvttgigLARSMTGL--IIGHVIVTC------PFVIATVTAALVGFDRSLEEAARSLGAS 175
Cdd:PRK09433  364 sgMLILAMPGIVLATGLFL--------LLRNTTDLpaSALGIVILTnalmalPYALRVLEPPMRDIAARYGRLCQSLGIR 435

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1172480970 176 PFTAFRLVTLKIISPAISAGTIFAFIISFGQFEVTLFLSTPNLQTLPMAMY 226
Cdd:PRK09433  436 GWSRLRLIELRALRRPLAQAFAFACALSLGDFGVIALFGSQDFRTLPFLLY 486
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
56-207 3.26e-09

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 56.30  E-value: 3.26e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  56 LTSPTFLSAYGVSFLVAGISTAISTVLGTMAALFLTRSSSRLVAPLRAFFMMPIVLPGVVLGLALYVFYVTTG------- 128
Cdd:PRK11602   57 LADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGplggwld 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 129 ---IGLARSMTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLKIISPAISAGTIFAFIISFG 205
Cdd:PRK11602  137 ehnLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIG 216


                  ..
gi 1172480970 206 QF 207
Cdd:PRK11602  217 EF 218
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 44-221 6.95e-09

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 56.03  E-value: 6.95e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  44 PQGFSLR-WVYAfltSPTFLSAYGVSFLVAGISTAISTVLGTMAALFLTRSSSRLVAPLRAFFMMPIVLPGVVLGLALYV 122
Cdd:COG4135   339 PSSWTLRfWQRA---APGLLEPLGNTLLLALASALIALVLVLACLEAEARRGRRPGRRALWLLYLPLLVPQIAFLFGLQV 415

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 123 FyvTTGIGLARSMTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLKIISPAISAGTIFAFII 202
Cdd:COG4135   416 L--LLRLGLDGTWLAVIWAHLVFVLPYVFLSLAGPWRALDPRYAQVAASLGASPWRVFWRVKLPLLLRPILTAAAVGFAV 493

                         170
                  ....*....|....*....
gi 1172480970 203 SFGQFEVTLFLSTPNLQTL 221
Cdd:COG4135   494 SVAQYLPTLLIGAGRVATL 512
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 62-254 2.31e-06

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 48.14  E-value: 2.31e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  62 LSAYGVSFLVAGISTAISTVLGTMAALFL--TRSSSRLVAPLRAFFMMPIVLPGVVLGLAlYVFYVTTGI----GLARSM 135
Cdd:TIGR03262 331 WEAYKNSLRLAATTALIGTILVFGGAYLIekTRGFGLLRGVLRFLAILPMAVPGLVLGLG-YIFFFNAPTnplnGLYGTM 409

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 136 TGLIIGHVI--VTCPFViaTVTAALVGFDRSLEEAARSLGASPFTAFRLVTLKIISPAISAGTIFAFIISFGQFEVTLFL 213
Cdd:TIGR03262 410 ALLVLCTVVhfYTVSHL--TAVTALKQIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFVNSMTTVSAVVFL 487

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1172480970 214 STPnlQTLPMAMYVALRYAFEPTAAAAGIfAILLVVVSMVA 254
Cdd:TIGR03262 488 YSP--DTKLASVAILNMDDAGDIAPAAAM-ATLIVLTSAVA 525
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 53-209 2.47e-06

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 47.76  E-value: 2.47e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  53 YAFLTSPTFLSAYGVSFLVAGISTAISTVLGTMAALFLTRsssrLVAPLRAFFMMPIVLP-------------------G 113
Cdd:PRK09497   53 YTRLLDPLYAEVLLHSLNMALIATLACLVLGYPFAWFLAK----LPHKVRPLLLFLLIVPfwtnsliriyglkiflstkG 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 114 VVLGLALYVFYVTTGIGLARSMTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLKIISPAIS 193
Cdd:PRK09497  129 YLNEFLLWLGVIDTPIRIMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGII 208

                         170
                  ....*....|....*.
gi 1172480970 194 AGTIFAFIISFGQFEV 209
Cdd:PRK09497  209 AGCLLVLLPAMGMFYV 224
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 79-260 4.08e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 46.14  E-value: 4.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  79 STVLGTMAALFLTRSSSRLvapLRAFFMMPIVLPGVVLGLALYVFYVTTGIGLArsMTGLIIGHVIVTCPFVIATVTAAL 158
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRL---LRPLIDLLQALPSFVLAILLVVIAILSILGHG--ILPAIILALLGWAGYARLIRRAAL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 159 VGFDRSLEEAARSLGASPFTAFRLVTLKIISPAISAGTIFAFIISFGQFEVTLFL-STPNLQTLPMAMYVALRYAFEPTA 237
Cdd:pfam00528  76 RSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgSWPGLGLLLIEAILGYDYPEIQGP 155

                         170       180
                  ....*....|....*....|...
gi 1172480970 238 AAAGIFAILLVVVSMVATSRLIN 260
Cdd:pfam00528 156 VLAAALILLLLNLLVDILQRLLD 178
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 34-217 6.97e-06

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 46.63  E-value: 6.97e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  34 LNAGDYLTFppqgfslrwvyafLTSPTFLSAYGVSFLVAGISTAISTVLGTMAALFLTRSSSrlvaPLRAFFMMPIVLP- 112
Cdd:PRK10683   81 LNLGNFLQL-------------TDDPLYFDAYLQSLQVAAISTLCCLLIGYPLAWAVAHSKP----STRNILLLLVILPs 143

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 113 ------------------GVVLGLALYVFYVTTGIGLARSMTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGA 174
Cdd:PRK10683  144 wtsflirvyawmgilknnGVLNNFLLWLGVIDQPLTILHTNLAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGA 223

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1172480970 175 SPFTAFRLVTLKIISPAISAGTIFAFIISFGQFEVTLFLSTPN 217
Cdd:PRK10683  224 RPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGPD 266
malG PRK10998
maltose ABC transporter permease MalG;
68-260 9.29e-06

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 45.86  E-value: 9.29e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  68 SFLVAGISTAISTVLGTMAALFLTRSSSRLVAPLRAFFMMPIVLPGVVLGLALYVFYVTTG-----IGLaRSMTGLIIGH 142
Cdd:PRK10998   88 SVKVAGITAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGqyipfIGL-NTHGGVIFAY 166

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 143 ViVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLKIISPAISAGTIFAFIISFGQFEV-TLFLSTPNLQTL 221
Cdd:PRK10998  167 L-GGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVaSLLLRDVNSYTL 245

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1172480970 222 PMAMYVAL---RYAFEPTAAAAGIFAILLVVVSMVATSRLIN 260
Cdd:PRK10998  246 AVGMQQYLnpqNYLWGDFAAAAVLSAIPITVVFLLAQRWLVG 287
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 39-246 2.52e-05

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 45.29  E-value: 2.52e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  39 YLTFPP------QGFSLRWVYAFLTSPTFLSAYGVSFLVAGISTAISTVLgTMAALFLTRSSSRLVAPLRAFF-----MM 107
Cdd:TIGR01253 293 FFLFPPllaiiiDALNSRNLLEVLANPQLWQALGTSLRIALAAALLALTL-AIALLLLSRELEALHKMKAGQFiemagML 371

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 108 PIVLPGVVLGLALYVFYVTTgIGLARSMTGLII-GHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLK 186
Cdd:TIGR01253 372 ILAIPGIVLAMGFFLLLNDR-DFLNIDADGIVIfCNALMAIPFALKILEAPFHDIMARYEMLCNSLGIEGWQRFKLIELK 450

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1172480970 187 IISPAISAGTIFAFIISFGQFEVTLFLSTPNLQTLPMAMYVAL-RYAFEPTAAAAGIFAIL 246
Cdd:TIGR01253 451 ALKAPLAQAFAFACALSIGDFGAIALFGNDDFRSLPFLLYQQIgNYRNQDAAVTAGILLLL 511
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 53-204 2.93e-04

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 41.29  E-value: 2.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  53 YAFLTSPTFLSAYGVSFLVAGISTAISTVLGTMAALFLTRSssrlvAPLRAFFMMPIVLPGVVLGLALY-VFYVTTGIGl 131
Cdd:COG0600    51 VELLASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLS-----RLLRRLLDPLLVFLRPIPPLALApLLILWFGIG- 124

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1172480970 132 arsMTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLKIISPAISAGTIFAFIISF 204
Cdd:COG0600   125 ---EASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAW 194
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 78-253 1.91e-03

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 39.13  E-value: 1.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  78 ISTVLGTMAALFLTRSSSRLVAPLRAFFM----MPIVLPGVVLGLALYVFYVTTG-------------IGLARSMTGLII 140
Cdd:TIGR01253  58 LSALLSIFFAIFLARALFRKPFLGKKALLklcaLTFILPALVAIFGIIGIYGRQGwlatlanlfglewQFHIYGLQGILI 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 141 GHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLKIISPAISAGTIFAFIISFGQFEVTLFLST-PNLQ 219
Cdd:TIGR01253 138 AHLFFNIPLAAQLFLQALENIPGEQRQLAAQLGLQGWHFFKFVEWPVFRQQCLPTAALIFMLCFASFATVLSLGGgPQAT 217

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1172480970 220 TLPMAMYVALRYAFEPTAAAagIFAILLVVVSMV 253
Cdd:TIGR01253 218 TIELAIYQAILFDFDLAKAA--LFALLQFVCCLG 249
pstA PRK11268
phosphate ABC transporter permease PstA;
68-259 2.01e-03

phosphate ABC transporter permease PstA;


Pssm-ID: 183065 [Multi-domain]  Cd Length: 295  Bit Score: 38.90  E-value: 2.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  68 SFLVAGISTAISTVLGTMAALFLTR--SSSRLVAPLRafFMMPIVL--PGVVLGLALYVFYVTTgiglARSMTGL--IIG 141
Cdd:PRK11268   86 SGLLILWATVVGTPLGIMAGIYLAEygRKSWLAEVIR--FINDILLsaPSIVVGLFVYTIVVAQ----MEHFSGWagVIA 159

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 142 HVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLKIISPAISAGTIFAFIISFGQFEVTLFLSTPN---- 217
Cdd:PRK11268  160 LALLQIPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGVLLAIARIAGETAPLLFTALSNqfws 239

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1172480970 218 ------LQTLPMAMYvalRYAFEPTA-----AAAGIFAILLVVVSMVATSRLI 259
Cdd:PRK11268  240 tdmmqpIANLPVTIF---KFAMSPFAewqqlAWAGVLLITLCVLLLNILARVV 289
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 68-254 2.27e-03

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 39.05  E-value: 2.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  68 SFLVAGISTAISTVLgtmaALFLTRSSSRLVAPLRAFFM----MPIVLPGVVLGLALYVFYVTTGIgLARS--------- 134
Cdd:PRK09433   49 SFWQAFLSALLSVLP----AIPLARALYRRRFPGRGLLLrlcaMTLVLPVLVAVFGLLSVYGRSGW-LAQLlqalglewp 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 135 -----MTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLKIISPAI--SAGTIFafIISFGQF 207
Cdd:PRK09433  124 fsiygLQGILLAHVFFNLPLATRLLLQALESIPAEQRQLAAQLGMRGWQFFRLVEWPYLRRQLppVAALIF--MLCFTSF 201

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1172480970 208 EVTLFLS-TPNLQTLPMAMYVALRYAFEPTAAAAgiFAILLVVVSMVA 254
Cdd:PRK09433  202 ATVLTLGgGPKATTIELAIYQALSFDFDLARAAL--LALLQMVLCLGL 247
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 68-222 4.05e-03

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 38.02  E-value: 4.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  68 SFLVAGISTAISTVLGTMAALFLT-RSSSRLVAPLRAFFMMPIVLPGVVLGL-ALYVF----------YVTTGIGLARSM 135
Cdd:TIGR02138  68 TLITSLIALLIAVPVGIGIAIFLSeIAPKRVRSVLKPVVELLAGIPSVVYGFwGLFVLvpflkphfqpFLGSNLGLIPLF 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970 136 TGLIIGHVIVTC----PFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLVTLKIISPAISAGTIFAFIISFGQFEVTL 211
Cdd:TIGR02138 148 GGPILTAGIVLAimilPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGETMAVT 227

                         170
                  ....*....|.
gi 1172480970 212 FLSTPNLQTLP 222
Cdd:TIGR02138 228 MVIGNVFPISP 238
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 48-193 6.01e-03

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 36.98  E-value: 6.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172480970  48 SLRWVYAFLTSPTFLSAYGVSFLVAGISTAISTVLGTMAALFLTrSSSRLVAPLRAFFM-----MPIVLpgvvlgLALYV 122
Cdd:COG0765     2 FFDFSVLLDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARL-SPNPVLRWLATAYVeffrgTPLLV------QLFFI 74

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1172480970 123 FYVTTGIGLARS-MTGLIIGHVIVTCPFVIATVTAALVGFDRSLEEAARSLGASPFTAFRLV----TLKIISPAIS 193
Cdd:COG0765    75 YFGLPLLGIDLSpFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIilpqALRIILPPLG 150
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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