|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
16-514 |
2.40e-170 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 488.13 E-value: 2.40e-170
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 16 LTRAAESLFRTFEHSSAGTLIVDRDARVVWINSRYAARFGFaDPRTAIGLDCEAVIPHSLMREVVATGRPILLDIMETG- 94
Cdd:COG3829 6 LKELEEELEAILDSLDDGIIVVDADGRITYVNRAAERILGL-PREEVIGKNVTELIPNSPLLEVLKTGKPVTGVIQKTGg 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 95 -REPLVVTRLPLVDEaGETVGAIGfaLFDELKTLTPLFARYMQVQqdllaaqrsLAQARRPKYTFASFVGTSAASLETKR 173
Cdd:COG3829 85 kGKTVIVTAIPIFED-GEVIGAVE--TFRDITELKRLERKLREEE---------LERGLSAKYTFDDIIGKSPAMKELLE 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 174 QARRAALVDAPVLLLGETGTGKELLAHAIHAASARAARPLVTVNVAAIPDALLETEFFGAAPGAYTGADRKGRVGKFELA 253
Cdd:COG3829 153 LAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKKGGKPGLFELA 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 254 DGGSLLLDEIGDMPLPLQGKLLRVLQDKEFEPVGSNRIVRADVRIIAATSADLPALVAAGRFRADLYYRLNVLTLNLPPL 333
Cdd:COG3829 233 DGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPL 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 334 RERASDIEALVYTMLEELAAQHGHaAHCTLTADALRLLAAHAWPGNVRELRNTLERALMLSDSAVIDARVLapfvgialp 413
Cdd:COG3829 313 RERKEDIPLLAEHFLEKFNKKYGK-NIKGISPEALELLLAYDWPGNVRELENVIERAVVLSEGDVITPEHL--------- 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 414 agaagpasgglpeePGGMREAGafaldargpdagdaaladrapSTMVAPATVSYAAAFADWERRFLSEALAASGGRVAEA 493
Cdd:COG3829 383 --------------PEYLLEEA---------------------EAASAAEEGSLKEALEEVEKELIEEALEKTGGNKSKA 427
|
490 500
....*....|....*....|.
gi 1248555212 494 AARIGIGRATLYKKIAALGLD 514
Cdd:COG3829 428 AKALGISRSTLYRKLKKYGIK 448
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
122-513 |
3.01e-83 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 267.04 E-value: 3.01e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 122 DELKTLTPLFARYMQVQQDL--LAAQRSLAQARRPKYTFAS-----FVGTSAASLETKRQARRAALVDAPVLLLGETGTG 194
Cdd:PRK05022 143 EELRALAALAAATLRNALLIeqLESQAELPQDVAEFLRQEAlkegeMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVG 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 195 KELLAHAIHAASARAARPLVTVNVAAIPDALLETEFFGAAPGAYTGADRKgRVGKFELADGGSLLLDEIGDMPLPLQGKL 274
Cdd:PRK05022 223 KELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISN-RSGKFELADGGTLFLDEIGELPLALQAKL 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 275 LRVLQDKEFEPVGSNRIVRADVRIIAATSADLPALVAAGRFRADLYYRLNVLTLNLPPLRERASDIEALVYTMLEELAAQ 354
Cdd:PRK05022 302 LRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRAR 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 355 HGhAAHCTLTADALRLLAAHAWPGNVRELRNTLERALMLSDSAVIDARVLApfvgialpagaagpasgglpeepggmrEA 434
Cdd:PRK05022 382 LG-LRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLARARGAGRIVTL---------------------------EA 433
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1248555212 435 GAFALdargpDAGDAALADRAPSTMVAPATVSYAAAFADWERRFLSEALAASGGRVAEAAARIGIGRATLYKKIAALGL 513
Cdd:PRK05022 434 QHLDL-----PAEVALPPPEAAAAPAAVVSQNLREATEAFQRQLIRQALAQHQGNWAAAARALELDRANLHRLAKRLGL 507
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
62-405 |
8.68e-83 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 266.58 E-value: 8.68e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 62 AIGLDCEAV------IPHSLMREVVATGRPILLDimETGREPLVVTRLPLVDEagETVGAIGFALFDELKTLTPLFA--- 132
Cdd:TIGR01817 56 AIGWSEEGFapiryrVGEGAIGQIVATGNSLVVP--DVAAEPLFLDRLSLYDP--GPVPFIGVPIKADSETIGVLAAdrd 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 133 -----------------------------RYMQVQQDLLA--------AQRSLAQARRPKYTFAS-FVGTSAASLETKRQ 174
Cdd:TIGR01817 132 frsrerleeevrflemvanligqtvrlhrLVAQRRERLIAeavqlskqLRDKAPEIARRRSGKEDgIIGKSPAMRQVVDQ 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 175 ARRAALVDAPVLLLGETGTGKELLAHAIHAASARAARPLVTVNVAAIPDALLETEFFGAAPGAYTGADRKgRVGKFELAD 254
Cdd:TIGR01817 212 ARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQ-RKGRFELAD 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 255 GGSLLLDEIGDMPLPLQGKLLRVLQDKEFEPVGSNRIVRADVRIIAATSADLPALVAAGRFRADLYYRLNVLTLNLPPLR 334
Cdd:TIGR01817 291 GGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLR 370
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1248555212 335 ERASDIEALVYTMLEELAAQHGHaaHCTLTADALRLLAAHAWPGNVRELRNTLERALMLSDSAVIDARVLA 405
Cdd:TIGR01817 371 ERREDIPLLAEAFLEKFNRENGR--PLTITPSAIRVLMSCKWPGNVRELENCLERTATLSRSGTITRSDFS 439
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
161-328 |
1.41e-82 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 253.48 E-value: 1.41e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 161 FVGTSAASLETKRQARRAALVDAPVLLLGETGTGKELLAHAIHAASARAARPLVTVNVAAIPDALLETEFFGAAPGAYTG 240
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 241 ADRKgRVGKFELADGGSLLLDEIGDMPLPLQGKLLRVLQDKEFEPVGSNRIVRADVRIIAATSADLPALVAAGRFRADLY 320
Cdd:pfam00158 81 ADSD-RKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLY 159
|
....*...
gi 1248555212 321 YRLNVLTL 328
Cdd:pfam00158 160 YRLNVIPI 167
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
170-324 |
1.93e-14 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 70.64 E-value: 1.93e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 170 ETKRQARRAAL--VDAPVLLLGETGTGKELLAHAIHAASARAARPLVTVNVAAIPDALLETEFFGAapgaytgADRKGRV 247
Cdd:cd00009 5 EAIEALREALElpPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGH-------FLVRLLF 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1248555212 248 GKFELADGGSLLLDEIGDMPLPLQGKLLRVLQDKEFEpvgsnRIVRADVRIIAATSADLPalvaaGRFRADLYYRLN 324
Cdd:cd00009 78 ELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDL-----RIDRENVRVIGATNRPLL-----GDLDRALYDRLD 144
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
184-323 |
9.21e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 42.75 E-value: 9.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 184 PVLLLGETGTGKELLAHAIHAASARAARPLVTVNVAAIPDALLETEFFGAAPGAYTGADRKGRVGK-FELADGGS---LL 259
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLaLALARKLKpdvLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1248555212 260 LDEIGDMPLPLQGKLLRVLqdkEFEPVGSNRIVRADVRIIAAT--SADLPALVAAGRFRADLYYRL 323
Cdd:smart00382 84 LDEITSLLDAEQEALLLLL---EELRLLLLLKSEKNLTVILTTndEKDLGPALLRRRFDRRIVLLL 146
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
16-514 |
2.40e-170 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 488.13 E-value: 2.40e-170
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 16 LTRAAESLFRTFEHSSAGTLIVDRDARVVWINSRYAARFGFaDPRTAIGLDCEAVIPHSLMREVVATGRPILLDIMETG- 94
Cdd:COG3829 6 LKELEEELEAILDSLDDGIIVVDADGRITYVNRAAERILGL-PREEVIGKNVTELIPNSPLLEVLKTGKPVTGVIQKTGg 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 95 -REPLVVTRLPLVDEaGETVGAIGfaLFDELKTLTPLFARYMQVQqdllaaqrsLAQARRPKYTFASFVGTSAASLETKR 173
Cdd:COG3829 85 kGKTVIVTAIPIFED-GEVIGAVE--TFRDITELKRLERKLREEE---------LERGLSAKYTFDDIIGKSPAMKELLE 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 174 QARRAALVDAPVLLLGETGTGKELLAHAIHAASARAARPLVTVNVAAIPDALLETEFFGAAPGAYTGADRKGRVGKFELA 253
Cdd:COG3829 153 LAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKKGGKPGLFELA 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 254 DGGSLLLDEIGDMPLPLQGKLLRVLQDKEFEPVGSNRIVRADVRIIAATSADLPALVAAGRFRADLYYRLNVLTLNLPPL 333
Cdd:COG3829 233 DGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPL 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 334 RERASDIEALVYTMLEELAAQHGHaAHCTLTADALRLLAAHAWPGNVRELRNTLERALMLSDSAVIDARVLapfvgialp 413
Cdd:COG3829 313 RERKEDIPLLAEHFLEKFNKKYGK-NIKGISPEALELLLAYDWPGNVRELENVIERAVVLSEGDVITPEHL--------- 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 414 agaagpasgglpeePGGMREAGafaldargpdagdaaladrapSTMVAPATVSYAAAFADWERRFLSEALAASGGRVAEA 493
Cdd:COG3829 383 --------------PEYLLEEA---------------------EAASAAEEGSLKEALEEVEKELIEEALEKTGGNKSKA 427
|
490 500
....*....|....*....|.
gi 1248555212 494 AARIGIGRATLYKKIAALGLD 514
Cdd:COG3829 428 AKALGISRSTLYRKLKKYGIK 448
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
31-512 |
8.83e-117 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 357.67 E-value: 8.83e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 31 SAGTLIVDRDARVVWINSRYAARFGFADPRtAIGLDCEAVIPHSLmrevvatgrpillDIMETGREPLVVTRLPLVDEAG 110
Cdd:COG3284 226 SEGLLAFDEDGRIVAANRAARRLLGLADAA-LLGRPLEELFGLDL-------------EALPDGARRAPASPRPLRLRDG 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 111 ETVGAIgfalfdelktltplfaryMQVQQDLLAAQRSLAQARRPkYTFASFVGTSAASLETKRQARRAALVDAPVLLLGE 190
Cdd:COG3284 292 RRLGAL------------------LRLRPARRAARAAPAGAPAP-AALAALAGGDPAMRRALRRARRLADRDIPVLILGE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 191 TGTGKELLAHAIHAASARAARPLVTVNVAAIPDALLETEFFGAAPGAYTGADRKGRVGKFELADGGSLLLDEIGDMPLPL 270
Cdd:COG3284 353 TGTGKELFARAIHAASPRADGPFVAVNCAAIPEELIESELFGYEPGAFTGARRKGRPGKIEQADGGTLFLDEIGDMPLAL 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 271 QGKLLRVLQDKEFEPVGSNRIVRADVRIIAATSADLPALVAAGRFRADLYYRLNVLTLNLPPLRERaSDIEALVYTMLEE 350
Cdd:COG3284 433 QARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAGRFREDLYYRLNGLTLTLPPLRER-EDLPALIEHLLRE 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 351 LAAQHGHAahcTLTADALRLLAAHAWPGNVRELRNTLERALMLSDSAVIDARvlapfvgialpagaagpasgGLPEEPgg 430
Cdd:COG3284 512 LAAGRGPL---RLSPEALALLAAYPWPGNVRELRNVLRTALALADGGVITVE--------------------DLPDEL-- 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 431 mreagafaldargpdagdaaladRAPSTMVAPATVSYAAAFADWERRFLSEALAASGGRVAEAAARIGIGRATLYKKIAA 510
Cdd:COG3284 567 -----------------------RAELAAAAPAAAAPLTSLEEAERDAILRALRACGGNVSAAARALGISRSTLYRKLKR 623
|
..
gi 1248555212 511 LG 512
Cdd:COG3284 624 YG 625
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
148-512 |
5.06e-106 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 323.07 E-value: 5.06e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 148 LAQARRPKYTFASFVGTSAASLETKRQARRAALVDAPVLLLGETGTGKELLAHAIHAASARAARPLVTVNVAAIPDALLE 227
Cdd:COG2204 120 RRRLRRENAEDSGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVAVNCAAIPEELLE 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 228 TEFFGAAPGAYTGADRKgRVGKFELADGGSLLLDEIGDMPLPLQGKLLRVLQDKEFEPVGSNRIVRADVRIIAATSADLP 307
Cdd:COG2204 200 SELFGHEKGAFTGAVAR-RIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDVRVIAATNRDLE 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 308 ALVAAGRFRADLYYRLNVLTLNLPPLRERASDIEALVYTMLEELAAQHGHAAHctLTADALRLLAAHAWPGNVRELRNTL 387
Cdd:COG2204 279 ELVEEGRFREDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKPVK--LSPEALEALLAYDWPGNVRELENVI 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 388 ERALMLSDSAVIDARVLapfvgialpagaagpasgglpeepggmreagafaldargpdagdaaladraPSTMvapatvsy 467
Cdd:COG2204 357 ERAVILADGEVITAEDL---------------------------------------------------PEAL-------- 377
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1248555212 468 aaafADWERRFLSEALAASGGRVAEAAARIGIGRATLYKKIAALG 512
Cdd:COG2204 378 ----EEVERELIERALEETGGNVSRAAELLGISRRTLYRKLKKYG 418
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
72-404 |
3.16e-92 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 290.55 E-value: 3.16e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 72 PHSLMREVVATGRPILLDIMetgrePLVVTrlplvDEAGET--VGAigfalfdeLKTLTPlFARymqVQQDLLAAQRSla 149
Cdd:COG3283 143 PRPQSERVVINGQDYLADIL-----PIYLP-----DEEGKSilAGA--------VVTLKS-AAR---LGEQLQALQVN-- 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 150 QARrpkyTFASFVGTSAASLETKRQARRAALVDAPVLLLGETGTGKELLAHAIHAASARAARPLVTVNVAAIPDALLETE 229
Cdd:COG3283 199 DDS----GFDHIVASSPKMRQVIRQAKKMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAESE 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 230 FFGAAPGAYtGADRKGRVGKFELADGGSLLLDEIGDMPLPLQGKLLRVLQDKEFEPVGSNRIVRADVRIIAATSADLPAL 309
Cdd:COG3283 275 LFGYAPGAF-GNAREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAEL 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 310 VAAGRFRADLYYRLNVLTLNLPPLRERASDIEALVYTMLEELAAQHGhAAHCTLTADALRLLAAHAWPGNVRELRNTLER 389
Cdd:COG3283 354 VQEGEFREDLYYRLNVLTLTLPPLRERKSDILPLAEHFVARFSQQLG-RPRPRLSPDLVDFLQSYPWPGNVRQLENALYR 432
|
330
....*....|....*
gi 1248555212 390 ALMLSDSAVIDARVL 404
Cdd:COG3283 433 AVSLLEGDELTPEDL 447
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
122-513 |
3.01e-83 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 267.04 E-value: 3.01e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 122 DELKTLTPLFARYMQVQQDL--LAAQRSLAQARRPKYTFAS-----FVGTSAASLETKRQARRAALVDAPVLLLGETGTG 194
Cdd:PRK05022 143 EELRALAALAAATLRNALLIeqLESQAELPQDVAEFLRQEAlkegeMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVG 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 195 KELLAHAIHAASARAARPLVTVNVAAIPDALLETEFFGAAPGAYTGADRKgRVGKFELADGGSLLLDEIGDMPLPLQGKL 274
Cdd:PRK05022 223 KELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISN-RSGKFELADGGTLFLDEIGELPLALQAKL 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 275 LRVLQDKEFEPVGSNRIVRADVRIIAATSADLPALVAAGRFRADLYYRLNVLTLNLPPLRERASDIEALVYTMLEELAAQ 354
Cdd:PRK05022 302 LRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRAR 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 355 HGhAAHCTLTADALRLLAAHAWPGNVRELRNTLERALMLSDSAVIDARVLApfvgialpagaagpasgglpeepggmrEA 434
Cdd:PRK05022 382 LG-LRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLARARGAGRIVTL---------------------------EA 433
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1248555212 435 GAFALdargpDAGDAALADRAPSTMVAPATVSYAAAFADWERRFLSEALAASGGRVAEAAARIGIGRATLYKKIAALGL 513
Cdd:PRK05022 434 QHLDL-----PAEVALPPPEAAAAPAAVVSQNLREATEAFQRQLIRQALAQHQGNWAAAARALELDRANLHRLAKRLGL 507
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
62-405 |
8.68e-83 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 266.58 E-value: 8.68e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 62 AIGLDCEAV------IPHSLMREVVATGRPILLDimETGREPLVVTRLPLVDEagETVGAIGFALFDELKTLTPLFA--- 132
Cdd:TIGR01817 56 AIGWSEEGFapiryrVGEGAIGQIVATGNSLVVP--DVAAEPLFLDRLSLYDP--GPVPFIGVPIKADSETIGVLAAdrd 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 133 -----------------------------RYMQVQQDLLA--------AQRSLAQARRPKYTFAS-FVGTSAASLETKRQ 174
Cdd:TIGR01817 132 frsrerleeevrflemvanligqtvrlhrLVAQRRERLIAeavqlskqLRDKAPEIARRRSGKEDgIIGKSPAMRQVVDQ 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 175 ARRAALVDAPVLLLGETGTGKELLAHAIHAASARAARPLVTVNVAAIPDALLETEFFGAAPGAYTGADRKgRVGKFELAD 254
Cdd:TIGR01817 212 ARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQ-RKGRFELAD 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 255 GGSLLLDEIGDMPLPLQGKLLRVLQDKEFEPVGSNRIVRADVRIIAATSADLPALVAAGRFRADLYYRLNVLTLNLPPLR 334
Cdd:TIGR01817 291 GGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLR 370
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1248555212 335 ERASDIEALVYTMLEELAAQHGHaaHCTLTADALRLLAAHAWPGNVRELRNTLERALMLSDSAVIDARVLA 405
Cdd:TIGR01817 371 ERREDIPLLAEAFLEKFNRENGR--PLTITPSAIRVLMSCKWPGNVRELENCLERTATLSRSGTITRSDFS 439
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
161-328 |
1.41e-82 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 253.48 E-value: 1.41e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 161 FVGTSAASLETKRQARRAALVDAPVLLLGETGTGKELLAHAIHAASARAARPLVTVNVAAIPDALLETEFFGAAPGAYTG 240
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 241 ADRKgRVGKFELADGGSLLLDEIGDMPLPLQGKLLRVLQDKEFEPVGSNRIVRADVRIIAATSADLPALVAAGRFRADLY 320
Cdd:pfam00158 81 ADSD-RKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLY 159
|
....*...
gi 1248555212 321 YRLNVLTL 328
Cdd:pfam00158 160 YRLNVIPI 167
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
121-514 |
2.26e-76 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 247.45 E-value: 2.26e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 121 FDeLKTLTPLFARYMQVQQdLLAAQRSLAQARRPKYTFASFVGTSAASLETKRQARRAALVDAPVLLLGETGTGKELLAH 200
Cdd:PRK11361 107 FD-LDELNLIVQRALQLQS-MKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIAR 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 201 AIHAASARAARPLVTVNVAAIPDALLETEFFGAAPGAYTGADRKgRVGKFELADGGSLLLDEIGDMPLPLQGKLLRVLQD 280
Cdd:PRK11361 185 AIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTL-RQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQE 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 281 KEFEPVGSNRIVRADVRIIAATSADLPALVAAGRFRADLYYRLNVLTLNLPPLRERASDIEALVYTMLEELAAQHgHAAH 360
Cdd:PRK11361 264 REFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSEN-QRDI 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 361 CTLTADALRLLAAHAWPGNVRELRNTLERALMLSDSAVIDARVLAPFVgialpagaagpasgGLPEEPGGMREAgafald 440
Cdd:PRK11361 343 IDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPPQI--------------RQPVCNAGEVKT------ 402
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1248555212 441 argpdagdAALADRAPSTMVapatvsyaaafADWERRFLSEALAASGGRVAEAAARIGIGRATLYKKIAALGLD 514
Cdd:PRK11361 403 --------APVGERNLKEEI-----------KRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQEYGID 457
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
146-513 |
3.47e-74 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 241.58 E-value: 3.47e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 146 RSLAQARRPKyTFASFVGTSAASLETKRQARRAALVDAPVLLLGETGTGKELLAHAIHAASARAARPLVTVNVAAIPDAL 225
Cdd:TIGR02915 127 RRLQSALGGT-ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENL 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 226 LETEFFGAAPGAYTGADRKGRvGKFELADGGSLLLDEIGDMPLPLQGKLLRVLQDKEFEPVGSNRIVRADVRIIAATSAD 305
Cdd:TIGR02915 206 LESELFGYEKGAFTGAVKQTL-GKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQD 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 306 LPALVAAGRFRADLYYRLNVLTLNLPPLRERASDIEALVYTMLEELAAQHGHAAHcTLTADALRLLAAHAWPGNVRELRN 385
Cdd:TIGR02915 285 LKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTK-GFTDDALRALEAHAWPGNVRELEN 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 386 TLERALMLSDSAVIDARVLApfvgialpagaagpasggLPEEPGGMREAGAFALDARgpdagdaalaDRApstmvapatv 465
Cdd:TIGR02915 364 KVKRAVIMAEGNQITAEDLG------------------LDARERAETPLEVNLREVR----------ERA---------- 405
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1248555212 466 syaaafadwERRFLSEALAASGGRVAEAAARIGIGRATLYKKIAALGL 513
Cdd:TIGR02915 406 ---------EREAVRKAIARVDGNIARAAELLGITRPTLYDLMKKHGI 444
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
158-514 |
1.54e-72 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 243.58 E-value: 1.54e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 158 FASFVGTSAASLETKRQARRAALVDAPVLLLGETGTGKELLAHAIHAASARAARPLVTVNVAAIPDALLETEFFGAAPGA 237
Cdd:PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 238 YTGADRKgRVGKFELADGGSLLLDEIGDMPLPLQGKLLRVLQDKEFEPVGSNRIVRADVRIIAATSADLPALVAAGRFRA 317
Cdd:PRK15429 455 FTGASAQ-RIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 318 DLYYRLNVLTLNLPPLRERASDIEALVYTMLEELAAQHGHAAHcTLTADALRLLAAHAWPGNVRELRNTLERALMLSDSA 397
Cdd:PRK15429 534 DLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNID-SIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGN 612
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 398 VIdarvlapfvgialpagaagpasgglpeepggmreagafaldargpdagDAALADRAPSTMVAPATVSYAAAFADWERR 477
Cdd:PRK15429 613 VL------------------------------------------------QLSLPDITLPEPETPPAATVVAQEGEDEYQ 644
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1248555212 478 FLSEALAASGGRVA---EAAARIGIGRATLYKKIAALGLD 514
Cdd:PRK15429 645 LIVRVLKETNGVVAgpkGAAQRLGLKRTTLLSRMKRLGID 684
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
174-391 |
2.57e-68 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 228.42 E-value: 2.57e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 174 QARRAALVDAPVLLLGETGTGKELLAHAIHAASARAARPLVTVNVAAIPDALLETEFFGAAPGAYTGAdRKGRVGKFELA 253
Cdd:PRK10820 219 QARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNA-LEGKKGFFEQA 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 254 DGGSLLLDEIGDMPLPLQGKLLRVLQDKEFEPVGSNRIVRADVRIIAATSADLPALVAAGRFRADLYYRLNVLTLNLPPL 333
Cdd:PRK10820 298 NGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPL 377
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1248555212 334 RERASDIEALVYTMLEELAAQHGhAAHCTLTADALRLLAAHAWPGNVRELRNTLERAL 391
Cdd:PRK10820 378 RDRPQDIMPLTELFVARFADEQG-VPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRAL 434
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
149-394 |
3.70e-68 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 228.45 E-value: 3.70e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 149 AQARRPKYTFASFVGTSAASLETKRQARRAALVDAPVLLLGETGTGKELL--------AHAIHAASARAARPLVTVNVAA 220
Cdd:PRK15424 209 RNALRTRYVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAaqaihreyFARHDARQGKKSHPFVAVNCGA 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 221 IPDALLETEFFGAAPGAYTGADRKGRVGKFELADGGSLLLDEIGDMPLPLQGKLLRVLQDKEFEPVGSNRIVRADVRIIA 300
Cdd:PRK15424 289 IAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVIS 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 301 ATSADLPALVAAGRFRADLYYRLNVLTLNLPPLRERASDIEALvytmLEELAAQHGHAAHCTLTADALRLLAAHA----- 375
Cdd:PRK15424 369 ATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPL----AESFLKQSLAALSAPFSAALRQGLQQCEtlllh 444
|
250 260
....*....|....*....|..
gi 1248555212 376 --WPGNVRELRNTLER-ALMLS 394
Cdd:PRK15424 445 ydWPGNVRELRNLMERlALFLS 466
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
153-510 |
1.67e-67 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 226.28 E-value: 1.67e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 153 RPKYTFASFVGTSAASLETKRQARRAALVDAPVLLLGETGTGKELLAHAIHAASARAARPLVTVNVAAIPDALLETEFFG 232
Cdd:TIGR02329 206 RTRYRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFG 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 233 AAPGAYTGADRKGRVGKFELADGGSLLLDEIGDMPLPLQGKLLRVLQDKEFEPVGSNRIVRADVRIIAATSADLPALVAA 312
Cdd:TIGR02329 286 YEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQ 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 313 GRFRADLYYRLNVLTLNLPPLRERASDIEALvytmLEELAAQHGHAAHCTLTADALRLLAA-------HAWPGNVRELRN 385
Cdd:TIGR02329 366 GRFRRDLFYRLSILRIALPPLRERPGDILPL----AAEYLVQAAAALRLPDSEAAAQVLAGvadplqrYPWPGNVRELRN 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 386 TLER-ALMLSdsaVIDARVLAPfvgialpagaaGPASGGLPEEpggmreagafaLDARGPdAGDAALADRAPSTMVAPAt 464
Cdd:TIGR02329 442 LVERlALELS---AMPAGALTP-----------DVLRALAPEL-----------AEASGK-GKTSALSLRERSRVEALA- 494
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1248555212 465 vsyaaafadwerrfLSEALAASGGRVAEAAARIGIGRATLYKKIAA 510
Cdd:TIGR02329 495 --------------VRAALERFGGDRDAAAKALGISRTTLWRRLKA 526
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
159-409 |
5.74e-67 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 222.79 E-value: 5.74e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 159 ASFVGTSAASLETKRQARRAALVDAPVLLLGETGTGKELLAHAIHAASARAARPLVTVNVAAIPDALLETEFFGAAPGAY 238
Cdd:PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAF 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 239 TGAdRKGRVGKFELADGGSLLLDEIGDMPLPLQGKLLRVLQDKEFEPVGSNRIVRADVRIIAATSADLPALVAAGRFRAD 318
Cdd:PRK15115 214 TGA-VSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFRED 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 319 LYYRLNVLTLNLPPLRERASDIEALVYTMLEELAAQHGHAAHcTLTADALRLLAAHAWPGNVRELRNTLERALMLSDSAV 398
Cdd:PRK15115 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVR-AFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPV 371
|
250
....*....|..
gi 1248555212 399 I-DARVLAPFVG 409
Cdd:PRK15115 372 IsDALVEQALEG 383
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
35-509 |
1.74e-66 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 221.44 E-value: 1.74e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 35 LIVDRDARVVWINSRYAARFGFADPRTAIGLDCEAVIPHSLMREVVATGRPILLDIMETGRE---------PLVVTRLPL 105
Cdd:PRK10365 9 LVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLKEikalnpaipVLIMTAYSS 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 106 VDEAGETV--GAIGFAL----FDELK-TLTPLFARYMQVQQDLLAAQRSLAqarrpkytfaSFVGTSAASLETKRQARRA 178
Cdd:PRK10365 89 VETAVEALktGALDYLIkpldFDNLQaTLEKALAHTHSIDAETPAVTASQF----------GMVGKSPAMQHLLSEIALV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 179 ALVDAPVLLLGETGTGKELLAHAIHAASARAARPLVTVNVAAIPDALLETEFFGAAPGAYTGADRKgRVGKFELADGGSL 258
Cdd:PRK10365 159 APSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKR-REGRFVEADGGTL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 259 LLDEIGDMPLPLQGKLLRVLQDKEFEPVGSNRIVRADVRIIAATSADLPALVAAGRFRADLYYRLNVLTLNLPPLRERAS 338
Cdd:PRK10365 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRRE 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 339 DIEALVYTMLEELAAQHGHAAHcTLTADALRLLAAHAWPGNVRELRNTLERALMLSDSAVIDARVLapfvgialpagaag 418
Cdd:PRK10365 318 DIPLLAGHFLQRFAERNRKAVK-GFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISEREL-------------- 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 419 pasgglpeepggmreagafaldargPDAGDAALADRAPSTMVAPatvsyaaaFADWERRFLSEALAASGGRVAEAAARIG 498
Cdd:PRK10365 383 -------------------------PLAIASTPIPLGQSQDIQP--------LVEVEKEVILAALEKTGGNKTEAARQLG 429
|
490
....*....|.
gi 1248555212 499 IGRATLYKKIA 509
Cdd:PRK10365 430 ITRKTLLAKLS 440
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
33-515 |
2.26e-65 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 223.40 E-value: 2.26e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 33 GTLIVDRDARVVWINSRYAARFGFaDPRTAIGLDCEAVI--PhSLMREVVATGRPilLDIMETGRE------PLVVTRLP 104
Cdd:PRK11388 215 GVIAWDEQGNLQFLNAQAARLLRL-DATASQGRAITELLtlP-AVLQQAIKQAHP--LKHVEVTFEsqgqfiDAVITLKP 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 105 LVDEAGETvgaigFALFdelktLTPLfaryMQVQQdlLAAQrslaQARRPKYTFASFVGTSAASLETKRQARRAALVDAP 184
Cdd:PRK11388 291 IIEGQGTS-----FILL-----LHPV----EQMRQ--LMTS----QLGKVSHTFDHMPQDSPQMRRLIHFGRQAAKSSFP 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 185 VLLLGETGTGKELLAHAIHAASARAARPLVTVNVAAIPDALLETEFFGAAPgaytGADRKGRVGKFELADGGSLLLDEIG 264
Cdd:PRK11388 351 VLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDR----TDSENGRLSKFELAHGGTLFLEKVE 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 265 DMPLPLQGKLLRVLQDKEFEPVGSNRIVRADVRIIAATSADLPALVAAGRFRADLYYRLNVLTLNLPPLRERASDIEALV 344
Cdd:PRK11388 427 YLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALV 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 345 YTMLEELAAQHghaaHCTLTAD--ALRLLAAHAWPGNVRELRNTLERALMLSDSAVIdarvlapfvgialpagaagpASG 422
Cdd:PRK11388 507 NNKLRSLEKRF----STRLKIDddALARLVSYRWPGNDFELRSVIENLALSSDNGRI--------------------RLS 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 423 GLPEEPGGMREAGafaldargpDAGDAALadrapstmvaPATVSyaaaFADWERRFLSEALAASGGRVAEAAARIGIGRA 502
Cdd:PRK11388 563 DLPEHLFTEQATD---------DVSATRL----------STSLS----LAELEKEAIINAAQVCGGRIQEMAALLGIGRT 619
|
490
....*....|...
gi 1248555212 503 TLYKKIAALGLDA 515
Cdd:PRK11388 620 TLWRKMKQHGIDA 632
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
160-433 |
1.29e-60 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 202.21 E-value: 1.29e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 160 SFVGTSAASLETKRQARRAALVDAPVLLLGETGTGKELLAHAIHAASARAARPLVTVNVAAIPDALLETEFFGAAPGAYT 239
Cdd:PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 240 GAdRKGRVGKFELADGGSLLLDEIGDMPLPLQGKLLRVLQDKEFEPVGSNRIVRADVRIIAATSADLPALVAAGRFRADL 319
Cdd:PRK11608 87 GA-QKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 320 YYRLNVLTLNLPPLRERASDIealvYTMLEELAAQHGHAAHCTL----TADALRLLAAHAWPGNVRELRNTLERALML-- 393
Cdd:PRK11608 166 LDRLAFDVVQLPPLRERQSDI----MLMAEHFAIQMCRELGLPLfpgfTERARETLLNYRWPGNIRELKNVVERSVYRhg 241
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1248555212 394 SDSAVIDARVLAPFVGIALPAGAAGPASGGLPEEPGGMRE 433
Cdd:PRK11608 242 TSEYPLDNIIIDPFKRRPAEEAIAVSETTSLPTLPLDLRE 281
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
159-514 |
3.32e-60 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 205.49 E-value: 3.32e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 159 ASFVGTSAASLETKRQARRAALVDAPVLLLGETGTGKELLAHAIHAASARAARPLVTVNVAAIPDALLETEFFGAAPGAY 238
Cdd:PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAF 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 239 TGADRKgRVGKFELADGGSLLLDEIGDMPLPLQGKLLRVLQDKEFEPVGSNRIVRADVRIIAATSADLPALVAAGRFRAD 318
Cdd:PRK10923 218 TGANTI-RQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 319 LYYRLNVLTLNLPPLRERASDIEALVYTMLEELAAQHGHAAHcTLTADALRLLAAHAWPGNVRELRNTLERALMLSDSAV 398
Cdd:PRK10923 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAK-LLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 399 IDARVLAPfvgialpagaaGPASGGLPEEPGGMReagafaldargPDAGDAALADRAPSTMVAPATVSYAAAFADWERRF 478
Cdd:PRK10923 376 VLIQDLPG-----------ELFESTVPESTSQMQ-----------PDSWATLLAQWADRALRSGHQNLLSEAQPELERTL 433
|
330 340 350
....*....|....*....|....*....|....*.
gi 1248555212 479 LSEALAASGGRVAEAAARIGIGRATLYKKIAALGLD 514
Cdd:PRK10923 434 LTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
187-514 |
1.47e-55 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 189.29 E-value: 1.47e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 187 LLGETGTGKELLAHAIHAASARAARPLVTVNVAAIPDALLETeffgaapgaytgadrkgrvgkfeladggsllldeigdm 266
Cdd:COG3604 120 ILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES-------------------------------------- 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 267 plplqgkllrvLQDKEFEPVGSNRIVRADVRIIAATSADLPALVAAGRFRADLYYRLNVLTLNLPPLRERASDIEALVYT 346
Cdd:COG3604 162 -----------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIRLPPLRERREDIPLLAEH 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 347 MLEELAAQHGhAAHCTLTADALRLLAAHAWPGNVRELRNTLERALMLSDSAVIDARVLAPfvgialpagaagpasgglpe 426
Cdd:COG3604 231 FLEKFSRRLG-KPILRLSPEALEALMAYPWPGNVRELENVIERAVILAEGGVLDADDLAP-------------------- 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 427 epggmreagafaldargpdagdaaladrapstmvapatvSYAAAFADWERRFLSEALAASGGRVAEAAARIGIGRATLYK 506
Cdd:COG3604 290 ---------------------------------------GSREALEEVEREHILEALERTGGNIAGAARLLGLTPSTLRS 330
|
....*...
gi 1248555212 507 KIAALGLD 514
Cdd:COG3604 331 RMKKLGIK 338
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
162-333 |
1.22e-17 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 79.31 E-value: 1.22e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 162 VGTSAASLETKRQARRAALVDAPVLLLGETGTGKELLAHAIHAASARAARPLVTVNVAAIPDALLETeffgaapgaytga 241
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLELLEQ------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 242 drkgrvgkfelADGGSLLLDEIGDMPLPLQGKLLRVLQdkefepvgsnRIVRADVRIIAATSADLPALVAAGRFRADLYY 321
Cdd:pfam14532 68 -----------AKGGTLYLKDIADLSKALQKGLLLLLA----------KAEGYRVRLVCTSSKDLPQLAAAGLFDEQLYF 126
|
170
....*....|..
gi 1248555212 322 RLNVLTLNLPPL 333
Cdd:pfam14532 127 ELSALRLHVPPL 138
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
158-385 |
4.13e-17 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 84.77 E-value: 4.13e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 158 FASFVGtSAASLETK-RQARRAALVDA---PVLLLGETGTGKELLAHA-----IHAASARAARPLVTVNVAaipD-A--- 224
Cdd:COG1221 103 FDNLIG-ANGSLKNAiEQAKAAILYPPkglHTLILGPTGVGKSFFAELmyeyaIEIGVLPEDAPFVVFNCA---DyAnnp 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 225 -LLETEFFGAAPGAYTGADrKGRVGKFELADGGSLLLDEIgdMPLPLQG--KLLRVLqDK-EFEPVG-SNRIVRADVRII 299
Cdd:COG1221 179 qLLMSQLFGYVKGAFTGAD-KDKEGLIEKADGGILFLDEV--HRLPPEGqeMLFTFM-DKgIYRRLGeTEKTRKANVRII 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 300 AATSADL------------PalvaagrfradlyyrlnvLTLNLPPLRERaSDIE--ALVYTMLEELAAQHGHAAHctLTA 365
Cdd:COG1221 255 FATTEDPessllktflrriP------------------MVIKLPSLEER-SLEErlELIKHFFKEEAKRLNKPIK--VSK 313
|
250 260
....*....|....*....|
gi 1248555212 366 DALRLLAAHAWPGNVRELRN 385
Cdd:COG1221 314 EVLKALLLYDCPGNIGQLKS 333
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
170-324 |
1.93e-14 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 70.64 E-value: 1.93e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 170 ETKRQARRAAL--VDAPVLLLGETGTGKELLAHAIHAASARAARPLVTVNVAAIPDALLETEFFGAapgaytgADRKGRV 247
Cdd:cd00009 5 EAIEALREALElpPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGH-------FLVRLLF 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1248555212 248 GKFELADGGSLLLDEIGDMPLPLQGKLLRVLQDKEFEpvgsnRIVRADVRIIAATSADLPalvaaGRFRADLYYRLN 324
Cdd:cd00009 78 ELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDL-----RIDRENVRVIGATNRPLL-----GDLDRALYDRLD 144
|
|
| PAS_4 |
pfam08448 |
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
27-119 |
1.33e-08 |
|
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain is associated to signalling systems and works as a signal sensor domain. It recognizes differently substituted aromatic hydrocarbons, oxygen, different dodecanoic acids, autoinducers, 3,5-dimethyl-pyrazin-2-ol and N-alanyl-aminoacetone (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 312075 [Multi-domain] Cd Length: 110 Bit Score: 52.80 E-value: 1.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 27 FEHSSAGTLIVDRDARVVWINSRYAARFGFaDPRTAIGLDCEAVIP-------HSLMREVVATGRPI-LLDIMETGREPL 98
Cdd:pfam08448 1 LDSLPDALAVLDPDGRVRYANAAAAELFGL-PPEELLGKTLAELLPpedaarlERALRRALEGEEPIdFLEELLLNGEER 79
|
90 100
....*....|....*....|...
gi 1248555212 99 VVTR--LPLVDEAGETVGAIGFA 119
Cdd:pfam08448 80 HYELrlTPLRDPDGEVIGVLVIS 102
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
475-510 |
1.40e-06 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 44.69 E-value: 1.40e-06
10 20 30
....*....|....*....|....*....|....*.
gi 1248555212 475 ERRFLSEALAASGGRVAEAAARIGIGRATLYKKIAA 510
Cdd:pfam02954 5 EKELIEAALERTGGNKSKAARLLGISRRTLYRKLKK 40
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
184-323 |
9.21e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 42.75 E-value: 9.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 184 PVLLLGETGTGKELLAHAIHAASARAARPLVTVNVAAIPDALLETEFFGAAPGAYTGADRKGRVGK-FELADGGS---LL 259
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLaLALARKLKpdvLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1248555212 260 LDEIGDMPLPLQGKLLRVLqdkEFEPVGSNRIVRADVRIIAAT--SADLPALVAAGRFRADLYYRL 323
Cdd:smart00382 84 LDEITSLLDAEQEALLLLL---EELRLLLLLKSEKNLTVILTTndEKDLGPALLRRRFDRRIVLLL 146
|
|
| NtrB |
COG3852 |
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms]; |
16-112 |
1.75e-04 |
|
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];
Pssm-ID: 443061 [Multi-domain] Cd Length: 361 Bit Score: 43.68 E-value: 1.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 16 LTRAAESLFRTFEHSSAGTLIVDRDARVVWINSRYAARFGFaDPRTAIGLDCEAVIPH-----SLMREVVATGRPIL--- 87
Cdd:COG3852 2 LRESEELLRAILDSLPDAVIVLDADGRITYVNPAAERLLGL-SAEELLGRPLAELFPEdsplrELLERALAEGQPVTere 80
|
90 100
....*....|....*....|....*..
gi 1248555212 88 LDIMETGREPLVV--TRLPLVDEAGET 112
Cdd:COG3852 81 VTLRRKDGEERPVdvSVSPLRDAEGEG 107
|
|
| PRK11086 |
PRK11086 |
sensory histidine kinase DcuS; Provisional |
27-116 |
3.18e-04 |
|
sensory histidine kinase DcuS; Provisional
Pssm-ID: 236839 [Multi-domain] Cd Length: 542 Bit Score: 43.36 E-value: 3.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 27 FEHSSA-------GTLIVDRDARVVWINSryAARFGFADPRTA----IGLDCEAVIPHSLMREVVATGRPIL-LDIMETG 94
Cdd:PRK11086 220 FEQRQAmlqsikeGVIAVDDRGEVTLIND--EAKRLFNYKKGLeddpLGTDVESWMPVSRLKEVLRTGTPRRdEEINING 297
|
90 100
....*....|....*....|..
gi 1248555212 95 REpLVVTRLPLVDEaGETVGAI 116
Cdd:PRK11086 298 RL-LLTNTVPVRVN-GEIIGAI 317
|
|
| PAS |
pfam00989 |
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
23-119 |
5.67e-04 |
|
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain can bind gases (O2, CO and NO), FAD, 4-hydroxycinnamic acid and NAD+ (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395786 [Multi-domain] Cd Length: 113 Bit Score: 39.71 E-value: 5.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 23 LFRTFEHSSAGTLIVDRDARVVWINSRYAARFGFaDPRTAIGLDCEAVIPHSLMREVVAtgrpILLDIMETGREP----- 97
Cdd:pfam00989 3 LRAILESLPDGIFVVDEDGRILYVNAAAEELLGL-SREEVIGKSLLDLIPEEDDAEVAE----LLRQALLQGEESrgfev 77
|
90 100 110
....*....|....*....|....*....|...
gi 1248555212 98 -----------LVVTRLPLVDEAGETVGAIGFA 119
Cdd:pfam00989 78 sfrvpdgrprhVEVRASPVRDAGGEILGFLGVL 110
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
184-336 |
1.48e-03 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 38.81 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 184 PVLLLGETGTGKELLahAIHAASARAARPLVTVnvaAIPDALLETEFFGA----------APGAYTGADRKGRVgkfela 253
Cdd:pfam07728 1 GVLLVGPPGTGKTEL--AERLAAALSNRPVFYV---QLTRDTTEEDLFGRrnidpggaswVDGPLVRAAREGEI------ 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 254 dggsLLLDEIGDMPLPLQGKLLRVLQDKEFEPVGSNRIVRA---DVRIIAATSadlpalvaagrfraDLYYRLNVLtlnL 330
Cdd:pfam07728 70 ----AVLDEINRANPDVLNSLLSLLDERRLLLPDGGELVKAapdGFRLIATMN--------------PLDRGLNEL---S 128
|
....*.
gi 1248555212 331 PPLRER 336
Cdd:pfam07728 129 PALRSR 134
|
|
| PAS |
COG2202 |
PAS domain [Signal transduction mechanisms]; |
16-119 |
8.35e-03 |
|
PAS domain [Signal transduction mechanisms];
Pssm-ID: 441804 [Multi-domain] Cd Length: 258 Bit Score: 38.08 E-value: 8.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248555212 16 LTRAAESLFRTFEHSSAGTLIVDRDARVVWINSRYAARFGFaDPRTAIGLDCEAVIPHSLMREVVATGRPILLDIMETGR 95
Cdd:COG2202 6 LEESERRLRALVESSPDAIIITDLDGRILYVNPAFERLTGY-SAEELLGKTLRDLLPPEDDDEFLELLRAALAGGGVWRG 84
|
90 100 110
....*....|....*....|....*....|....*
gi 1248555212 96 E-----------PLVVTRLPLVDEAGETVGAIGFA 119
Cdd:COG2202 85 ElrnrrkdgslfWVELSISPVRDEDGEITGFVGIA 119
|
|
| |
