|
Name |
Accession |
Description |
Interval |
E-value |
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
4-221 |
1.00e-116 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 332.39 E-value: 1.00e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYR 83
Cdd:COG1136 5 LELRNLTKSYGTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERELARLR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVPNLTALENVELAAQICPDSL-----DAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPK 158
Cdd:COG1136 85 RRHIGFVFQFFNLLPELTALENVALPLLLAGVSRkerreRARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALVNRPK 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1469306817 159 LLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAPMADRLIRFKSGRVESETV 221
Cdd:COG1136 165 LILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPELAARADRVIRLRDGRIVSDER 227
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
4-216 |
6.13e-107 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 307.11 E-value: 6.13e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYR 83
Cdd:cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVPNLTALENVELAAQICPDS-----LDAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPK 158
Cdd:cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPkkerrERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1469306817 159 LLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAPMADRLIRFKSGRV 216
Cdd:cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
4-220 |
1.07e-84 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 251.20 E-value: 1.07e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYR 83
Cdd:COG4181 9 IELRGLTKTVGTGAGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALDEDARARLR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVPNLTALENV----ELAAQicPDSLD-AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPK 158
Cdd:COG4181 89 ARHVGFVFQSFQLLPTLTALENVmlplELAGR--RDARArARALLERVGLGHRLDHYPAQLSGGEQQRVALARAFATEPA 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1469306817 159 LLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAPMADRLIRFKSGRVESET 220
Cdd:COG4181 167 ILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPALAARCDRVLRLRAGRLVEDT 228
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
4-222 |
1.56e-75 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 227.63 E-value: 1.56e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYR 83
Cdd:COG2884 2 IRFENVSKRYPGG---REALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPYLR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RaDVGFVFQFYNLVPNLTALENVELAAQIC---PDSL--DAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPK 158
Cdd:COG2884 79 R-RIGVVFQDFRLLPDRTVYENVALPLRVTgksRKEIrrRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1469306817 159 LLLCDEPTGALDYKTGKQILQLLQDTCRkQGITVIIITHNSAL-APMADRLIRFKSGRVESETVQ 222
Cdd:COG2884 158 LLLADEPTGNLDPETSWEIMELLEEINR-RGTTVLIATHDLELvDRMPKRVLELEDGRLVRDEAR 221
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
4-197 |
4.65e-74 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 224.38 E-value: 4.65e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYR 83
Cdd:cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RaDVGFVFQFYNLVPNLTALENVELAAQICPDSLD-----AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPK 158
Cdd:cd03258 82 R-RIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAeieerVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 1469306817 159 LLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITH 197
Cdd:cd03258 161 VLLCDEATSALDPETTQSILALLRDINRELGLTIVLITH 199
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-216 |
1.12e-71 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 219.19 E-value: 1.12e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 1 MAYIEFKDVIKAYGEGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSAneaqlv 80
Cdd:COG1116 5 APALELRGVSKRFPTGGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGP------ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 81 eyrRADVGFVFQFYNLVPNLTALENVELAAQICPDSLD-----AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAK 155
Cdd:COG1116 79 ---GPDRGVVFQEPALLPWLTVLDNVALGLELRGVPKAerrerARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALAN 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 156 NPKLLLCDEPTGALDYKTgKQILQ-LLQDTCRKQGITVIIITHNS--ALApMADRLIRFKS--GRV 216
Cdd:COG1116 156 DPEVLLMDEPFGALDALT-RERLQdELLRLWQETGKTVLFVTHDVdeAVF-LADRVVVLSArpGRI 219
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
4-197 |
2.86e-70 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 218.02 E-value: 2.86e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYR 83
Cdd:COG1135 2 IELENLSKTFPTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERELRAAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RaDVGFVFQFYNLVPNLTALENVELAAQIcpDSLDAEQT-------LRQVGLGDRLANFPAQLSGGEQQRVSIARALAKN 156
Cdd:COG1135 82 R-KIGMIFQHFNLLSSRTVAENVALPLEI--AGVPKAEIrkrvaelLELVGLSDKADAYPSQLSGGQKQRVGIARALANN 158
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1469306817 157 PKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITH 197
Cdd:COG1135 159 PKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITH 199
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
4-216 |
2.60e-69 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 212.61 E-value: 2.60e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDariHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYR 83
Cdd:COG3638 3 LELRNLSKRYPGGT---PALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRALRRLR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RaDVGFVFQFYNLVPNLTALENV------------ELAAQICPDSLD-AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIA 150
Cdd:COG3638 80 R-RIGMIFQQFNLVPRLSVLTNVlagrlgrtstwrSLLGLFPPEDRErALEALERVGLADKAYQRADQLSGGQQQRVAIA 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1469306817 151 RALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAPM-ADRLIRFKSGRV 216
Cdd:COG3638 159 RALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRyADRIIGLRDGRV 225
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
4-219 |
1.84e-67 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 206.94 E-value: 1.84e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANeaqlveyr 83
Cdd:cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPG-------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 rADVGFVFQFYNLVPNLTALENVELAAQI--CPDSL---DAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPK 158
Cdd:cd03293 73 -PDRGYVFQQDALLPWLTVLDNVALGLELqgVPKAEareRAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPD 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1469306817 159 LLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHN--SALApMADRLIRFKS--GRVESE 219
Cdd:cd03293 152 VLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDidEAVF-LADRVVVLSArpGRIVAE 215
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
4-225 |
4.81e-66 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 204.07 E-value: 4.81e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSsANEAQLVEYR 83
Cdd:COG1126 2 IEIENLHKSFGD----LEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLT-DSKKDINKLR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RaDVGFVFQFYNLVPNLTALENVELA---------AQICPDsldAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALA 154
Cdd:COG1126 77 R-KVGMVFQQFNLFPHLTVLENVTLApikvkkmskAEAEER---AMELLERVGLADKADAYPAQLSGGQQQRVAIARALA 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 155 KNPKLLLCDEPTGALDYKTGKQILQLLQDTcRKQGITVIIITHNSALA-PMADRLIRFKSGR-VESETVQQ---NP 225
Cdd:COG1126 153 MEPKVMLFDEPTSALDPELVGEVLDVMRDL-AKEGMTMVVVTHEMGFArEVADRVVFMDGGRiVEEGPPEEffeNP 227
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-217 |
5.72e-66 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 207.64 E-value: 5.72e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 1 MAYIEFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSaneaqLV 80
Cdd:COG3842 3 MPALELENVSKRYGD----VTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTG-----LP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 81 EYRRaDVGFVFQFYNLVPNLTALENV------------ELAAQicpdsldAEQTLRQVGLGDRLANFPAQLSGGEQQRVS 148
Cdd:COG3842 74 PEKR-NVGMVFQDYALFPHLTVAENVafglrmrgvpkaEIRAR-------VAELLELVGLEGLADRYPHQLSGGQQQRVA 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1469306817 149 IARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNS--ALApMADRLIRFKSGRVE 217
Cdd:COG3842 146 LARALAPEPRVLLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTHDQeeALA-LADRIAVMNDGRIE 215
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
4-215 |
1.35e-63 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 197.09 E-value: 1.35e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYR 83
Cdd:TIGR02673 2 IEFHNVSKAYPGG---VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RAdVGFVFQFYNLVPNLTALENVELAAQI---CPDSLD--AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPK 158
Cdd:TIGR02673 79 RR-IGVVFQDFRLLPDRTVYENVALPLEVrgkKEREIQrrVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1469306817 159 LLLCDEPTGALDYKTGKQILQLLQDTCRkQGITVIIITHNSALAP-MADRLIRFKSGR 215
Cdd:TIGR02673 158 LLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDLSLVDrVAHRVIILDDGR 214
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
4-216 |
1.63e-63 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 197.34 E-value: 1.63e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLvEYR 83
Cdd:cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLR-KIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQ--FYNLVPNLTALENVE--LAAQICPDSLDAEQT-----LRQVGLGDRLAN-FPAQLSGGEQQRVSIARAL 153
Cdd:cd03257 81 RKEIQMVFQdpMSSLNPRMTIGEQIAepLRIHGKLSKKEARKEavlllLVGVGLPEEVLNrYPHELSGGQRQRVAIARAL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1469306817 154 AKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHN-SALAPMADRLIRFKSGRV 216
Cdd:cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDlGVVAKIADRVAVMYAGKI 224
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
4-225 |
4.59e-63 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 204.75 E-value: 4.59e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGE-GDARIHALDGASFTVERGE-LAIIlGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVE 81
Cdd:COG1123 261 LEVRNLSKRYPVrGKGGVRAVDDVSLTLRRGEtLGLV-GESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRSLRE 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 82 YRRaDVGFVFQ--FYNLVPNLTALENVELAAQICPDSLDAE------QTLRQVGLGDRLAN-FPAQLSGGEQQRVSIARA 152
Cdd:COG1123 340 LRR-RVQMVFQdpYSSLNPRMTVGDIIAEPLRLHGLLSRAErrervaELLERVGLPPDLADrYPHELSGGQRQRVAIARA 418
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1469306817 153 LAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAP-MADRLIRFKSGRV----ESETVQQNP 225
Cdd:COG1123 419 LALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRyIADRVAVMYDGRIvedgPTEEVFANP 496
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
4-217 |
7.73e-63 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 195.05 E-value: 7.73e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSaneaqLVEYR 83
Cdd:cd03259 1 LELKGLSKTYGS----VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTG-----VPPER 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RaDVGFVFQFYNLVPNLTALENVELAAQICPDSLD-----AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPK 158
Cdd:cd03259 72 R-NIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAeirarVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPS 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1469306817 159 LLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITH--NSALApMADRLIRFKSGRVE 217
Cdd:cd03259 151 LLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHdqEEALA-LADRIAVMNEGRIV 210
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
4-216 |
2.90e-62 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 193.51 E-value: 2.90e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSsANEAQLVEYR 83
Cdd:cd03262 1 IEIKNLHKSFGD----FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLT-DDKKNINELR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RaDVGFVFQFYNLVPNLTALENVELA---AQICPDSlDAEQT----LRQVGLGDRLANFPAQLSGGEQQRVSIARALAKN 156
Cdd:cd03262 76 Q-KVGMVFQQFNLFPHLTVLENITLApikVKGMSKA-EAEERalelLEKVGLADKADAYPAQLSGGQQQRVAIARALAMN 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1469306817 157 PKLLLCDEPTGALDYKTGKQILQLLQDTCrKQGITVIIITHNSALA-PMADRLIRFKSGRV 216
Cdd:cd03262 154 PKVMLFDEPTSALDPELVGEVLDVMKDLA-EEGMTMVVVTHEMGFArEVADRVIFMDDGRI 213
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
4-220 |
1.49e-60 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 189.99 E-value: 1.49e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYR 83
Cdd:PRK10584 7 VEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVPNLTALENVELAAQICPDS-----LDAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPK 158
Cdd:PRK10584 87 AKHVGFVFQSFMLIPTLNALENVELPALLRGESsrqsrNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPD 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1469306817 159 LLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAPMADRLIRFKSGRVESET 220
Cdd:PRK10584 167 VLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEEA 228
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
4-216 |
3.18e-60 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 189.32 E-value: 3.18e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDariHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYR 83
Cdd:cd03256 1 IEVENLSKTYPNGK---KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RaDVGFVFQFYNLVPNLTALENV------------ELAAQICP-DSLDAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIA 150
Cdd:cd03256 78 R-QIGMIFQQFNLIERLSVLENVlsgrlgrrstwrSLFGLFPKeEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIA 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1469306817 151 RALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALA-PMADRLIRFKSGRV 216
Cdd:cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLArEYADRIVGLKDGRI 223
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
4-216 |
3.79e-60 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 189.43 E-value: 3.79e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDariHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYR 83
Cdd:TIGR02315 2 LEVENLSKVYPNGK---QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RaDVGFVFQFYNLVPNLTALENV---ELAA----QIC------PDSLDAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIA 150
Cdd:TIGR02315 79 R-RIGMIFQHYNLIERLTVLENVlhgRLGYkptwRSLlgrfseEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIA 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1469306817 151 RALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALA-PMADRLIRFKSGRV 216
Cdd:TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAkKYADRIVGLKAGEI 224
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
4-197 |
4.43e-60 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 192.32 E-value: 4.43e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYR 83
Cdd:PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RaDVGFVFQFYNLVPNLTALENVELA---AQICPDSLDA--EQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPK 158
Cdd:PRK11153 82 R-QIGMIFQHFNLLSSRTVFDNVALPlelAGTPKAEIKArvTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 1469306817 159 LLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITH 197
Cdd:PRK11153 161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITH 199
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
4-219 |
3.66e-59 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 186.93 E-value: 3.66e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQlveyR 83
Cdd:COG1124 2 LEVRNLSVSYGQGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRKA----F 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFY--NLVPNLTALENVELAAQIC--PDSLD-AEQTLRQVGLGDRLAN-FPAQLSGGEQQRVSIARALAKNP 157
Cdd:COG1124 78 RRRVQMVFQDPyaSLHPRHTVDRILAEPLRIHglPDREErIAELLEQVGLPPSFLDrYPHQLSGGQRQRVAIARALILEP 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1469306817 158 KLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSAL-APMADRLIRFKSGRVESE 219
Cdd:COG1124 158 ELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVvAHLCDRVAVMQNGRIVEE 220
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
7-210 |
4.50e-59 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 185.13 E-value: 4.50e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 7 KDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYRRAD 86
Cdd:TIGR03608 2 KNISKKFGD----KVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKFRREK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 87 VGFVFQFYNLVPNLTALENVELAAQICPDSLDAEQ-----TLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLL 161
Cdd:TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKRekkkeALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLIL 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1469306817 162 CDEPTGALDYKTGKQILQLLQDTcRKQGITVIIITHNSALAPMADRLIR 210
Cdd:TIGR03608 158 ADEPTGSLDPKNRDEVLDLLLEL-NDEGKTIIIVTHDPEVAKQADRVIE 205
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
2-216 |
7.09e-59 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 185.95 E-value: 7.09e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 2 AYIEFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVE 81
Cdd:COG1127 4 PMIEVRNLTKSFGD----RVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKELYE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 82 YRRaDVGFVFQFYNLVPNLTALENVEL---------AAQIcpDSLdAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARA 152
Cdd:COG1127 80 LRR-RIGMLFQGGALFDSLTVFENVAFplrehtdlsEAEI--REL-VLEKLELVGLPGAADKMPSELSGGMRKRVALARA 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 153 LAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITH--NSALApMADRLIRFKSGRV 216
Cdd:COG1127 156 LALDPEILLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHdlDSAFA-IADRVAVLADGKI 220
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
4-215 |
2.74e-58 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 182.39 E-value: 2.74e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANeaQLVEYR 83
Cdd:cd03229 1 LELKNVSKRYGQ----KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLE--DELPPL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVPNLTALENVELAaqicpdsldaeqtlrqvglgdrlanfpaqLSGGEQQRVSIARALAKNPKLLLCD 163
Cdd:cd03229 75 RRRIGMVFQDFALFPHLTVLENIALG-----------------------------LSGGQQQRVALARALAMDPDVLLLD 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1469306817 164 EPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALA-PMADRLIRFKSGR 215
Cdd:cd03229 126 EPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAaRLADRVVVLRDGK 178
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
2-218 |
3.16e-58 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 194.56 E-value: 3.16e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 2 AYIEFKDVIKAYGEGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVE 81
Cdd:PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 82 YRRADVGFVFQFYNLVPNLTALENVELAAQICPDS-----LDAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKN 156
Cdd:PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLErkqrlLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNG 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1469306817 157 PKLLLCDEPTGALDYKTGKQILQLLQDTcRKQGITVIIITHNSALAPMADRLIRFKSGRVES 218
Cdd:PRK10535 163 GQVILADEPTGALDSHSGEEVMAILHQL-RDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVR 223
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
4-216 |
1.33e-57 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 181.84 E-value: 1.33e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYR 83
Cdd:cd03292 1 IEFINVTKTYPNG---TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RAdVGFVFQFYNLVPNLTALENVELAAQIC--PDSLDAEQT---LRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPK 158
Cdd:cd03292 78 RK-IGVVFQDFRLLPDRNVYENVAFALEVTgvPPREIRKRVpaaLELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPT 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 159 LLLCDEPTGALDYKTGKQILQLLQDTcRKQGITVIIITHNSAL-APMADRLIRFKSGRV 216
Cdd:cd03292 157 ILIADEPTGNLDPDTTWEIMNLLKKI-NKAGTTVVVATHAKELvDTTRHRVIALERGKL 214
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
4-216 |
1.76e-57 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 182.19 E-value: 1.76e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGegdaRIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQlveyr 83
Cdd:COG1131 1 IEVRGLTKRYG----DKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEV----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVPNLTALENVELAAQICPDSLD-----AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPK 158
Cdd:COG1131 72 RRRIGYVPQEPALYPDLTVRENLRFFARLYGLPRKearerIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPE 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 159 LLLCDEPTGALDYKTGKQILQLLQDTcRKQGITVIIITHN-SALAPMADRLIRFKSGRV 216
Cdd:COG1131 152 LLILDEPTSGLDPEARRELWELLREL-AAEGKTVLLSTHYlEEAERLCDRVAIIDKGRI 209
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
4-217 |
2.76e-56 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 178.97 E-value: 2.76e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGdariHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVssaneAQLVEYR 83
Cdd:cd03300 1 IELENVSKFYGGF----VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI-----TNLPPHK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RaDVGFVFQFYNLVPNLTALENVELA---AQICPDSLDA--EQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPK 158
Cdd:cd03300 72 R-PVNTVFQNYALFPHLTVFENIAFGlrlKKLPKAEIKErvAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPK 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1469306817 159 LLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNS--ALApMADRLIRFKSGRVE 217
Cdd:cd03300 151 VLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQeeALT-MSDRIAVMNKGKIQ 210
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
4-217 |
3.52e-56 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 182.27 E-value: 3.52e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGegdaRIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQlveyR 83
Cdd:COG1118 3 IEVRNISKRFG----SFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLFTNLPPR----E 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RaDVGFVFQFYNLVPNLTALENVELAAQICPDSLD-----AEQTLRQV---GLGDRlanFPAQLSGGEQQRVSIARALAK 155
Cdd:COG1118 75 R-RVGFVFQHYALFPHMTVAENIAFGLRVRPPSKAeirarVEELLELVqleGLADR---YPSQLSGGQRQRVALARALAV 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1469306817 156 NPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHN--SALaPMADRLIRFKSGRVE 217
Cdd:COG1118 151 EPEVLLLDEPFGALDAKVRKELRRWLRRLHDELGGTTVFVTHDqeEAL-ELADRVVVMNQGRIE 213
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
4-223 |
6.70e-55 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 175.38 E-value: 6.70e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGdariHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYR 83
Cdd:cd03261 1 IELRGLTKSFGGR----TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RaDVGFVFQFYNLVPNLTALENVEL---AAQICPDSL---DAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNP 157
Cdd:cd03261 77 R-RMGMLFQSGALFDSLTVFENVAFplrEHTRLSEEEireIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDP 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 158 KLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITH--NSALApMADRLIRFKSGRVESE-TVQQ 223
Cdd:cd03261 156 ELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHdlDTAFA-IADRIAVLYDGKIVAEgTPEE 223
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
11-219 |
1.68e-54 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 174.62 E-value: 1.68e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 11 KAYGEGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYRRADVGFV 90
Cdd:PRK11629 13 KRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 91 FQFYNLVPNLTALENVE---LAAQICPDSLD--AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEP 165
Cdd:PRK11629 93 YQFHHLLPDFTALENVAmplLIGKKKPAEINsrALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEP 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1469306817 166 TGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAPMADRLIRFKSGRVESE 219
Cdd:PRK11629 173 TGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAE 226
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-217 |
2.86e-54 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 177.57 E-value: 2.86e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 1 MAYIEFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSaneaqlV 80
Cdd:COG3839 1 MASLELENVSKSYGG----VEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTD------L 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 81 EYRRADVGFVFQFYNLVPNLTALENVELA---AQICPDSLDA--EQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAK 155
Cdd:COG3839 71 PPKDRNIAMVFQSYALYPHMTVYENIAFPlklRKVPKAEIDRrvREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVR 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1469306817 156 NPKLLLCDEPTGALDYK----TGKQILQLLQDTcrkqGITVIIITHNS--ALApMADRLIRFKSGRVE 217
Cdd:COG3839 151 EPKVFLLDEPLSNLDAKlrveMRAEIKRLHRRL----GTTTIYVTHDQveAMT-LADRIAVMNDGRIQ 213
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
4-216 |
1.44e-53 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 171.75 E-value: 1.44e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLveyr 83
Cdd:COG1122 1 IELENLSFSYPGG---TPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLREL---- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYN--LVpNLTALENV------------ELAAQIcpdsldaEQTLRQVGLGDRLANFPAQLSGGEQQRVSI 149
Cdd:COG1122 74 RRKVGLVFQNPDdqLF-APTVEEDVafgpenlglpreEIRERV-------EEALELVGLEHLADRPPHELSGGQKQRVAI 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1469306817 150 ARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDtCRKQGITVIIITHN-SALAPMADRLIRFKSGRV 216
Cdd:COG1122 146 AGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKR-LNKEGKTVIIVTHDlDLVAELADRVIVLDDGRI 212
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
4-227 |
2.49e-53 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 171.81 E-value: 2.49e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSaNEAQLVEYR 83
Cdd:PRK09493 2 IEFKNVSKHFGP----TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVDERLIR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RaDVGFVFQFYNLVPNLTALENV------------ELAAQIcpdsldAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIAR 151
Cdd:PRK09493 77 Q-EAGMVFQQFYLFPHLTALENVmfgplrvrgaskEEAEKQ------ARELLAKVGLAERAHHYPSELSGGQQQRVAIAR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 152 ALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCrKQGITVIIITHNSALA-PMADRLIRFKSGRV----ESETVQQNPV 226
Cdd:PRK09493 150 ALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLA-EEGMTMVIVTHEIGFAeKVASRLIFIDKGRIaedgDPQVLIKNPP 228
|
.
gi 1469306817 227 S 227
Cdd:PRK09493 229 S 229
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-209 |
4.21e-52 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 169.27 E-value: 4.21e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 1 MAYIEFKDVIKAYGEGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANeaqlv 80
Cdd:COG4525 1 MSMLTVRHVSVRYPGGGQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTGPG----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 81 eyrrADVGFVFQFYNLVPNLTALENVELAAQICPDSLD-----AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAK 155
Cdd:COG4525 76 ----ADRGVVFQKDALLPWLNVLDNVAFGLRLRGVPKAerrarAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAA 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 156 NPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHN--SALApMADRLI 209
Cdd:COG4525 152 DPRFLLMDEPFGALDALTREQMQELLLDVWQRTGKGVFLITHSveEALF-LATRLV 206
|
|
| ABC_MetN |
TIGR02314 |
D-methionine ABC transporter, ATP-binding protein; Members of this family are the ATP-binding ... |
4-197 |
2.89e-51 |
|
D-methionine ABC transporter, ATP-binding protein; Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Pssm-ID: 131367 [Multi-domain] Cd Length: 343 Bit Score: 169.68 E-value: 2.89e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYR 83
Cdd:TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RaDVGFVFQFYNLVPNLTALENVELAAQICPDSLDAEQT-----LRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPK 158
Cdd:TIGR02314 82 R-QIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRkvtelLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 1469306817 159 LLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITH 197
Cdd:TIGR02314 161 VLLCDEATSALDPATTQSILELLKEINRRLGLTILLITH 199
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
5-215 |
3.00e-51 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 165.33 E-value: 3.00e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 5 EFKDVIKAYGEGDAriHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLveyrR 84
Cdd:cd03225 1 ELKNLSFSYPDGAR--PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKEL----R 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 85 ADVGFVFQFynlvP-----NLTALENVELAA---QICPDSLD--AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALA 154
Cdd:cd03225 75 RKVGLVFQN----PddqffGPTVEEEVAFGLenlGLPEEEIEerVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1469306817 155 KNPKLLLCDEPTGALDYKTGKQILQLLQDTcRKQGITVIIITHN-SALAPMADRLIRFKSGR 215
Cdd:cd03225 151 MDPDILLLDEPTAGLDPAGRRELLELLKKL-KAEGKTIIIVTHDlDLLLELADRVIVLEDGK 211
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
4-223 |
7.36e-51 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 172.40 E-value: 7.36e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGdaRIHALDGASFTVERGELAIILGASGAGKTT---ALNILGGMDTATFGTVTVDGRDVSSANEAQlv 80
Cdd:COG1123 5 LEVRDLSVRYPGG--DVPAVDGVSLTIAPGETVALVGESGSGKSTlalALMGLLPHGGRISGEVLLDGRDLLELSEAL-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 81 eyRRADVGFVFQ--FYNLVPnLTALENVELAAQICPDSLD-----AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARAL 153
Cdd:COG1123 81 --RGRRIGMVFQdpMTQLNP-VTVGDQIAEALENLGLSRAeararVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMAL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1469306817 154 AKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSAL-APMADRLIRFKSGR-VESETVQQ 223
Cdd:COG1123 158 ALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVvAEIADRVVVMDDGRiVEDGPPEE 229
|
|
| PhnT2 |
TIGR03265 |
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ... |
1-217 |
1.03e-50 |
|
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274496 [Multi-domain] Cd Length: 353 Bit Score: 168.29 E-value: 1.03e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 1 MAYIEFKDVIKAYGegdaRIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQlv 80
Cdd:TIGR03265 2 SPYLSIDNIRKRFG----AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQK-- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 81 eyrrADVGFVFQFYNLVPNLTALENV------------ELAAQIcpdsldaEQTLRQVGLGDRLANFPAQLSGGEQQRVS 148
Cdd:TIGR03265 76 ----RDYGIVFQSYALFPNLTVADNIayglknrgmgraEVAERV-------AELLDLVGLPGSERKYPGQLSGGQQQRVA 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1469306817 149 IARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNS--ALApMADRLIRFKSGRVE 217
Cdd:TIGR03265 145 LARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQeeALS-MADRIVVMNHGVIE 214
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
4-207 |
1.04e-50 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 167.54 E-value: 1.04e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIHALDGASFTVERGE-LAIIlGASGAGK-TTALNILG----GMDTAtfGTVTVDGRDVSSANEA 77
Cdd:COG0444 2 LEVRNLKVYFPTRRGVVKAVDGVSFDVRRGEtLGLV-GESGSGKsTLARAILGllppPGITS--GEILFDGEDLLKLSEK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 78 QLVEYRRADVGFVFQ--FYNLVPNLTALENVELAAQICpDSLD-------AEQTLRQVGLGD---RLANFPAQLSGGEQQ 145
Cdd:COG0444 79 ELRKIRGREIQMIFQdpMTSLNPVMTVGDQIAEPLRIH-GGLSkaearerAIELLERVGLPDperRLDRYPHELSGGMRQ 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1469306817 146 RVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHN-SALAPMADR 207
Cdd:COG0444 158 RVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDlGVVAEIADR 220
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
4-217 |
8.71e-50 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 166.66 E-value: 8.71e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDArihaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSaneaqlVEYR 83
Cdd:PRK09452 15 VELRGISKSFDGKEV----ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITH------VPAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVPNLTALENVEL--------AAQICPDSLDAeqtLRQVGLGDRLANFPAQLSGGEQQRVSIARALAK 155
Cdd:PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFglrmqktpAAEITPRVMEA---LRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVN 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1469306817 156 NPKLLLCDEPTGALDYKTGKQI---LQLLQdtcRKQGITVIIITHN--SALApMADRLIRFKSGRVE 217
Cdd:PRK09452 162 KPKVLLLDESLSALDYKLRKQMqneLKALQ---RKLGITFVFVTHDqeEALT-MSDRIVVMRDGRIE 224
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
4-227 |
9.84e-50 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 162.51 E-value: 9.84e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGegdaRIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSaneaqlVEYR 83
Cdd:cd03296 3 IEVRNVSKRFG----DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATD------VPVQ 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVPNLTALENVELAAQICPDSLD---------AEQTLRQVGLgDRLAN-FPAQLSGGEQQRVSIARAL 153
Cdd:cd03296 73 ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERppeaeirakVHELLKLVQL-DWLADrYPAQLSGGQRQRVALARAL 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 154 AKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALA-PMADRLIRFKSGRVES----ETVQQNPVS 227
Cdd:cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEAlEVADRVVVMNKGRIEQvgtpDEVYDHPAS 230
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
22-225 |
8.95e-48 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 158.58 E-value: 8.95e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 22 ALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYRRADVGFVFQFYNLVPNLT 101
Cdd:cd03294 39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRT 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 102 ALENVELAAQICPDSLD-----AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQ 176
Cdd:cd03294 119 VLENVAFGLEVQGVPRAereerAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRRE 198
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1469306817 177 ILQLLQDTCRKQGITVIIITH--NSALApMADRLIRFKSGRVE----SETVQQNP 225
Cdd:cd03294 199 MQDELLRLQAELQKTIVFITHdlDEALR-LGDRIAIMKDGRLVqvgtPEEILTNP 252
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
4-216 |
1.43e-47 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 157.51 E-value: 1.43e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGegDARIhaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVeyR 83
Cdd:COG1120 2 LEAENLSVGYG--GRPV--LDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRELA--R 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RadVGFVFQFYNLVPNLTALENVELA--------AQICPDSLDA-EQTLRQVGLGDrLANFP-AQLSGGEQQRVSIARAL 153
Cdd:COG1120 76 R--IAYVPQEPPAPFGLTVRELVALGryphlglfGRPSAEDREAvEEALERTGLEH-LADRPvDELSGGERQRVLIARAL 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1469306817 154 AKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITH--NSALApMADRLIRFKSGRV 216
Cdd:COG1120 153 AQEPPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHdlNLAAR-YADRLVLLKDGRI 216
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
21-218 |
5.45e-47 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 154.76 E-value: 5.45e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 21 HALDgASFTVErGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRD-VSSANEAQLVEYRRAdVGFVFQFYNLVPN 99
Cdd:cd03297 13 FTLK-IDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVlFDSRKKINLPPQQRK-IGLVFQQYALFPH 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 100 LTALENVELAAQICPDSLD---AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQ 176
Cdd:cd03297 90 LNVRENLAFGLKRKRNREDrisVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQ 169
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1469306817 177 ILQLLQDTCRKQGITVIIITHN-SALAPMADRLIRFKSGRVES 218
Cdd:cd03297 170 LLPELKQIKKNLNIPVIFVTHDlSEAEYLADRIVVMEDGRLQY 212
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
4-216 |
7.77e-47 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 154.91 E-value: 7.77e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARihaldgASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQlveyr 83
Cdd:COG3840 2 LRLDDLTYRYGDFPLR------FDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAE----- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RAdVGFVFQFYNLVPNLTALENVELAaqICPD-SLDAEQ------TLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKN 156
Cdd:COG3840 71 RP-VSMLFQENNLFPHLTVAQNIGLG--LRPGlKLTAEQraqveqALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRK 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1469306817 157 PKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHN--SALApMADRLIRFKSGRV 216
Cdd:COG3840 148 RPILLLDEPFSALDPALRQEMLDLVDELCRERGLTVLMVTHDpeDAAR-IADRVLLVADGRI 208
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
4-225 |
8.86e-47 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 154.90 E-value: 8.86e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSsaneaQLVEYR 83
Cdd:cd03219 1 LEVRGLTKRFGG----LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDIT-----GLPPHE 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFV--FQFYNLVPNLTALENVELAAQI-CPDSLD--------------AEQTLRQVGLGDRlANFPA-QLSGGEQQ 145
Cdd:cd03219 72 IARLGIGrtFQIPRLFPELTVLENVMVAAQArTGSGLLlararreerearerAEELLERVGLADL-ADRPAgELSYGQQR 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 146 RVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTcRKQGITVIIITHN-SALAPMADRLIRFKSGRV----ESET 220
Cdd:cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIREL-RERGITVLLVEHDmDVVMSLADRVTVLDQGRViaegTPDE 229
|
....*
gi 1469306817 221 VQQNP 225
Cdd:cd03219 230 VRNNP 234
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
4-216 |
1.67e-46 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 154.25 E-value: 1.67e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAqlveyR 83
Cdd:COG4555 2 IEVENLSKKYGK----VPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPRE-----A 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVPNLTALENVELAAQICPDSLDA-----EQTLRQVGLG---DRLAnfpAQLSGGEQQRVSIARALAK 155
Cdd:COG4555 73 RRQIGVLPDERGLYDRLTVRENIRYFAELYGLFDEElkkriEELIELLGLEeflDRRV---GELSTGMKKKVALARALVH 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1469306817 156 NPKLLLCDEPTGALDYKTGKQILQLLQDtCRKQGITVIIITHN-SALAPMADRLIRFKSGRV 216
Cdd:COG4555 150 DPKVLLLDEPTNGLDVMARRLLREILRA-LKKEGKTVLFSSHImQEVEALCDRVVILHKGKV 210
|
|
| OpuBA |
COG1125 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
4-217 |
1.93e-46 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440742 [Multi-domain] Cd Length: 306 Bit Score: 156.02 E-value: 1.93e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDArihALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLveyR 83
Cdd:COG1125 2 IEFENVTKRYPDGTV---AVDDLSLTIPAGEFTVLVGPSGCGKTTTLRMINRLIEPTSGRILIDGEDIRDLDPVEL---R 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RaDVGFVFQFYNLVPNLTALENVEL--------AAQIcpdSLDAEQTLRQVGL-GDRLAN-FPAQLSGGEQQRVSIARAL 153
Cdd:COG1125 76 R-RIGYVIQQIGLFPHMTVAENIATvprllgwdKERI---RARVDELLELVGLdPEEYRDrYPHELSGGQQQRVGVARAL 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 154 AKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITH--NSALApMADRLIRFKSGRVE 217
Cdd:COG1125 152 AADPPILLMDEPFGALDPITREQLQDELLRLQRELGKTIVFVTHdiDEALK-LGDRIAVMREGRIV 216
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
4-216 |
2.59e-46 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 161.47 E-value: 2.59e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDAriHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLveyr 83
Cdd:COG4987 334 LELEDVSFRYPGAGR--PVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDL---- 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQ----FYNlvpnlTALENVELAAqicPDSLDAE--QTLRQVGLGDRLANFP-----------AQLSGGEQQR 146
Cdd:COG4987 408 RRRIAVVPQrphlFDT-----TLRENLRLAR---PDATDEElwAALERVGLGDWLAALPdgldtwlgeggRRLSGGERRR 479
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 147 VSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCrkQGITVIIITHNSALAPMADRLIRFKSGRV 216
Cdd:COG4987 480 LALARALLRDAPILLLDEPTEGLDAATEQALLADLLEAL--AGRTVLLITHRLAGLERMDRILVLEDGRI 547
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
4-216 |
2.98e-46 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 152.97 E-value: 2.98e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVeyr 83
Cdd:cd03224 1 LEVENLNAGYGK----SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERA--- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVPNLTALENVELAAQICPDSlDAEQTLRQV-----GLGDRLANFPAQLSGGEQQRVSIARALAKNPK 158
Cdd:cd03224 74 RAGIGYVPEGRRIFPELTVEENLLLGAYARRRA-KRKARLERVyelfpRLKERRKQLAGTLSGGEQQMLAIARALMSRPK 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 159 LLLCDEPTGALDYKTGKQILQLLQDTcRKQGITVIIITHNSALA-PMADRLIRFKSGRV 216
Cdd:cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIREL-RDEGVTILLVEQNARFAlEIADRAYVLERGRV 210
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
5-229 |
3.37e-46 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 154.04 E-value: 3.37e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 5 EFKDVIKAYGEgdarIHALDGASFTVERGE-LAIIlGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSaneaqLVEYR 83
Cdd:COG0411 6 EVRGLTKRFGG----LVAVDDVSLEVERGEiVGLI-GPNGAGKTTLFNLITGFYRPTSGRILFDGRDITG-----LPPHR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFV--FQFYNLVPNLTALENVELAAQICPDSL--------------------DAEQTLRQVGLGDRLANFPAQLSG 141
Cdd:COG0411 76 IARLGIArtFQNPRLFPELTVLENVLVAAHARLGRGllaallrlprarreereareRAEELLERVGLADRADEPAGNLSY 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 142 GEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHN-SALAPMADRLIRFKSGRV---- 216
Cdd:COG0411 156 GQQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDmDLVMGLADRIVVLDFGRViaeg 235
|
250
....*....|...
gi 1469306817 217 ESETVQQNPVSIE 229
Cdd:COG0411 236 TPAEVRADPRVIE 248
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
4-217 |
5.65e-46 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 152.84 E-value: 5.65e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDArihALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLveyr 83
Cdd:cd03295 1 IEFENVTKRYGGGKK---AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVEL---- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVPNLTALENVELAAQICPDSLD-----AEQTLRQVGLGDR--LANFPAQLSGGEQQRVSIARALAKN 156
Cdd:cd03295 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEkirerADELLALVGLDPAefADRYPHELSGGQQQRVGVARALAAD 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1469306817 157 PKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITH--NSALApMADRLIRFKSGRVE 217
Cdd:cd03295 154 PPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHdiDEAFR-LADRIAIMKNGEIV 215
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
4-216 |
6.84e-46 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 150.24 E-value: 6.84e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGdariHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQlveyr 83
Cdd:cd03230 1 IEVRNLSKRYGKK----TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEV----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVPNLTALENVELaaqicpdsldaeqtlrqvglgdrlanfpaqlSGGEQQRVSIARALAKNPKLLLCD 163
Cdd:cd03230 72 KRRIGYLPEEPSLYENLTVRENLKL-------------------------------SGGMKQRLALAQALLHDPELLILD 120
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1469306817 164 EPTGALDYKTGKQILQLLQDtCRKQGITVIIITHNSALAP-MADRLIRFKSGRV 216
Cdd:cd03230 121 EPTSGLDPESRREFWELLRE-LKKEGKTILLSSHILEEAErLCDRVAILNNGRI 173
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
38-227 |
1.16e-45 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 154.57 E-value: 1.16e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 38 ILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSsaneaQLVEYRRAdVGFVFQFYNLVPNLTALENV--------ELA 109
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVT-----NVPPHLRH-INMVFQSYALFPHMTVEENVafglkmrkVPR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 110 AQICPDSLDAeqtLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQG 189
Cdd:TIGR01187 75 AEIKPRVLEA---LRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLG 151
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1469306817 190 ITVIIITHNSALA-PMADRLIRFKSGRV----ESETVQQNPVS 227
Cdd:TIGR01187 152 ITFVFVTHDQEEAmTMSDRIAIMRKGKIaqigTPEEIYEEPAN 194
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
4-217 |
1.46e-45 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 150.87 E-value: 1.46e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSaneaqlVEYR 83
Cdd:cd03301 1 VELENVTKRFGN----VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTD------LPPK 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVPNLTALENVELAAQI---CPDSLDA--EQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPK 158
Cdd:cd03301 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLrkvPKDEIDErvREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPK 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1469306817 159 LLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHN--SALApMADRLIRFKSGRVE 217
Cdd:cd03301 151 VFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDqvEAMT-MADRIAVMNDGQIQ 210
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
4-215 |
1.52e-45 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 149.46 E-value: 1.52e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIhaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLveyr 83
Cdd:cd03228 1 IEFKNVSFSYPGRPKPV--LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESL---- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVpNLTALENVelaaqicpdsldaeqtlrqvglgdrlanfpaqLSGGEQQRVSIARALAKNPKLLLCD 163
Cdd:cd03228 75 RKNIAYVPQDPFLF-SGTIRENI--------------------------------LSGGQRQRIAIARALLRDPPILILD 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1469306817 164 EPTGALDYKTGKQILQLLQDtcRKQGITVIIITHNSALAPMADRLIRFKSGR 215
Cdd:cd03228 122 EATSALDPETEALILEALRA--LAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
4-216 |
1.97e-45 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 160.77 E-value: 1.97e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDAriHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLveyr 83
Cdd:COG2274 474 IELENVSFRYPGDSP--PVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPASL---- 547
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQ----FYNlvpnlTALENVELAAQICPDSlDAEQTLRQVGLGDRLANFP-----------AQLSGGEQQRVS 148
Cdd:COG2274 548 RRQIGVVLQdvflFSG-----TIRENITLGDPDATDE-EIIEAARLAGLHDFIEALPmgydtvvgeggSNLSGGQRQRLA 621
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1469306817 149 IARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDtcRKQGITVIIITHNSALAPMADRLIRFKSGRV 216
Cdd:COG2274 622 IARALLRNPRILILDEATSALDAETEAIILENLRR--LLKGRTVIIIAHRLSTIRLADRIIVLDKGRI 687
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
23-166 |
2.61e-45 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 148.18 E-value: 2.61e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLveyrRADVGFVFQFYNLVPNLTA 102
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSL----RKEIGYVFQDPQLFPRLTV 76
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1469306817 103 LENVELAAQIC-----PDSLDAEQTLRQVGLGD----RLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPT 166
Cdd:pfam00005 77 RENLRLGLLLKglskrEKDARAEEALEKLGLGDladrPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPT 149
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-223 |
3.08e-45 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 151.01 E-value: 3.08e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 1 MAYIEFKDVIKAYGegdaRIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSAneaqlv 80
Cdd:COG1121 4 MPAIELENLTVSYG----GRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRA------ 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 81 eyrRADVGFVFQFYNLVPN--LTALENVE--LAAQICP-------DSLDAEQTLRQVGLGDrLANFP-AQLSGGEQQRVS 148
Cdd:COG1121 74 ---RRRIGYVPQRAEVDWDfpITVRDVVLmgRYGRRGLfrrpsraDREAVDEALERVGLED-LADRPiGELSGGQQQRVL 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 149 IARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDtCRKQGITVIIITHN-SALAPMADRLIRFKSGRVESETVQQ 223
Cdd:COG1121 150 LARALAQDPDLLLLDEPFAGVDAATEEALYELLRE-LRREGKTILVVTHDlGAVREYFDRVLLLNRGLVAHGPPEE 224
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
4-216 |
3.76e-45 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 149.58 E-value: 3.76e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVikAYGEGDARIhaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANeaqLVEYR 83
Cdd:COG4619 1 LELEGL--SFRVGGKPI--LSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMP---PPEWR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RaDVGFVFQfynlVPNL---TALENVELAAQICPDSLD---AEQTLRQVGLGDRLANFPA-QLSGGEQQRVSIARALAKN 156
Cdd:COG4619 74 R-QVAYVPQ----EPALwggTVRDNLPFPFQLRERKFDrerALELLERLGLPPDILDKPVeRLSGGERQRLALIRALLLQ 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1469306817 157 PKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSA-LAPMADRLIRFKSGRV 216
Cdd:COG4619 149 PDVLLLDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEqIERVADRVLTLEAGRL 209
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
4-216 |
4.66e-45 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 150.55 E-value: 4.66e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDArihaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVS---SANEAQLV 80
Cdd:COG4161 3 IQLKNINCFYGSHQA----LFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQFDfsqKPSEKAIR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 81 EYRRaDVGFVFQFYNLVPNLTALEN-----VELAAQICPDSLD-AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALA 154
Cdd:COG4161 79 LLRQ-KVGMVFQQYNLWPHLTVMENlieapCKVLGLSKEQAREkAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALM 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 155 KNPKLLLCDEPTGALDYKTGKQ---ILQLLQDTcrkqGITVIIITHNSALA-PMADRLIRFKSGRV 216
Cdd:COG4161 158 MEPQVLLFDEPTAALDPEITAQvveIIRELSQT----GITQVIVTHEVEFArKVASQVVYMEKGRI 219
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
5-215 |
3.33e-44 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 145.47 E-value: 3.33e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 5 EFKDVIKAYGEGdariHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLveyrR 84
Cdd:cd00267 1 EIENLSFRYGGR----TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEEL----R 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 85 ADVGFVFQfynlvpnltalenvelaaqicpdsldaeqtlrqvglgdrlanfpaqLSGGEQQRVSIARALAKNPKLLLCDE 164
Cdd:cd00267 73 RRIGYVPQ----------------------------------------------LSGGQRQRVALARALLLNPDLLLLDE 106
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1469306817 165 PTGALDYKTGKQILQLLQDTCrKQGITVIIITHNSALAPMA-DRLIRFKSGR 215
Cdd:cd00267 107 PTSGLDPASRERLLELLRELA-EEGRTVIIVTHDPELAELAaDRVIVLKDGK 157
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
12-223 |
5.92e-44 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 154.46 E-value: 5.92e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 12 AYGEGDARIHALDGASFTVERGE-LAIIlGASGAGKT-TALNILG----GMDTATfGTVTVDGRDVSSANEAQLVEYRRA 85
Cdd:COG4172 15 AFGQGGGTVEAVKGVSFDIAAGEtLALV-GESGSGKSvTALSILRllpdPAAHPS-GSILFDGQDLLGLSERELRRIRGN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 86 DVGFVFQfynlVPnLTAL-----------ENVELAAQICPDSLDAE--QTLRQVGLGD---RLANFPAQLSGGEQQRVSI 149
Cdd:COG4172 93 RIAMIFQ----EP-MTSLnplhtigkqiaEVLRLHRGLSGAAARARalELLERVGIPDperRLDAYPHQLSGGQRQRVMI 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 150 ARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSAL-APMADRLIRFKSGR-VESETVQQ 223
Cdd:COG4172 168 AMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVvRRFADRVAVMRQGEiVEQGPTAE 243
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
19-225 |
8.41e-44 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 154.07 E-value: 8.41e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 19 RIHALDGASFTVERGE-LAIIlGASGAGKTT-ALNILGGMDTAtfGTVTVDGRDVSSANEAQLVEYRRaDVGFVFQ--FY 94
Cdd:COG4172 298 HVKAVDGVSLTLRRGEtLGLV-GESGSGKSTlGLALLRLIPSE--GEIRFDGQDLDGLSRRALRPLRR-RMQVVFQdpFG 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 95 NLVPNLTALENVE--LAAQicPDSLDAEQ-------TLRQVGLGDRLAN-FPAQLSGGEQQRVSIARALAKNPKLLLCDE 164
Cdd:COG4172 374 SLSPRMTVGQIIAegLRVH--GPGLSAAErrarvaeALEEVGLDPAARHrYPHEFSGGQRQRIAIARALILEPKLLVLDE 451
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 165 PTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAP-MADRLIRFKSGRV----ESETVQQNP 225
Cdd:COG4172 452 PTSALDVSVQAQILDLLRDLQREHGLAYLFISHDLAVVRaLAHRVMVMKDGKVveqgPTEQVFDAP 517
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
4-223 |
1.05e-43 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 154.15 E-value: 1.05e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDArihALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLveyr 83
Cdd:COG4988 337 IELEDVSFSYPGGRP---ALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASW---- 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFyNLVPNLTALENVELAAqicPDSLDAE--QTLRQVGLGDRLANFP-----------AQLSGGEQQRVSIA 150
Cdd:COG4988 410 RRQIAWVPQN-PYLFAGTIRENLRLGR---PDASDEEleAALEAAGLDEFVAALPdgldtplgeggRGLSGGQAQRLALA 485
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1469306817 151 RALAKNPKLLLCDEPTGALDYKTGKQILQLLQDtcRKQGITVIIITHNSALAPMADRLIRFKSGR-VESETVQQ 223
Cdd:COG4988 486 RALLRDAPLLLLDEPTAHLDAETEAEILQALRR--LAKGRTVILITHRLALLAQADRILVLDDGRiVEQGTHEE 557
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
4-216 |
1.22e-43 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 146.10 E-value: 1.22e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIhaldgaSFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAqlveyr 83
Cdd:cd03298 1 VRLDKIRFSYGEQPMHF------DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPA------ 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVPNLTALENVELAaqICPD-SLDAEQ------TLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKN 156
Cdd:cd03298 69 DRPVSMLFQENNLFAHLTVEQNVGLG--LSPGlKLTAEDrqaievALARVGLAGLEKRLPGELSGGERQRVALARVLVRD 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1469306817 157 PKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHN-SALAPMADRLIRFKSGRV 216
Cdd:cd03298 147 KPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQpEDAKRLAQRVVFLDNGRI 207
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
23-216 |
2.06e-43 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 144.50 E-value: 2.06e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYrradVGFVFQfynlvpnltA 102
Cdd:cd03214 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARK----IAYVPQ---------A 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 103 LENVELAAqicpdsldaeqtlrqvgLGDRLANfpaQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQ 182
Cdd:cd03214 82 LELLGLAH-----------------LADRPFN---ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLR 141
|
170 180 190
....*....|....*....|....*....|....*
gi 1469306817 183 DTCRKQGITVIIITHNSALAPM-ADRLIRFKSGRV 216
Cdd:cd03214 142 RLARERGKTVVMVLHDLNLAARyADRVILLKDGRI 176
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
4-223 |
5.62e-43 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 144.63 E-value: 5.62e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGM-----DTATFGTVTVDGRDVSSANEaQ 78
Cdd:cd03260 1 IELRDLNVYYGD----KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLndlipGAPDEGEVLLDGKDIYDLDV-D 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 79 LVEYRRAdVGFVFQFYNLVPnLTALENVELAAQI-------CPDSLdAEQTLRQVGLGDRLAN--FPAQLSGGEQQRVSI 149
Cdd:cd03260 76 VLELRRR-VGMVFQKPNPFP-GSIYDNVAYGLRLhgiklkeELDER-VEEALRKAALWDEVKDrlHALGLSGGQQQRLCL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 150 ARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKqgITVIIITHNSALAP-MADRLIRFKSGR-VESETVQQ 223
Cdd:cd03260 153 ARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAArVADRTAFLLNGRlVEFGPTEQ 226
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
4-227 |
1.65e-42 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 144.56 E-value: 1.65e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVS----------S 73
Cdd:COG4598 9 LEVRDLHKSFGD----LEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGEEIRlkpdrdgelvP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 74 ANEAQlVEYRRADVGFVFQFYNLVPNLTALENV-------------ELAAQicpdsldAEQTLRQVGLGDRLANFPAQLS 140
Cdd:COG4598 85 ADRRQ-LQRIRTRLGMVFQSFNLWSHMTVLENVieapvhvlgrpkaEAIER-------AEALLAKVGLADKRDAYPAHLS 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 141 GGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCrKQGITVIIITHNSALA-PMADRLIRFKSGRVESE 219
Cdd:COG4598 157 GGQQQRAAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMRDLA-EEGRTMLVVTHEMGFArDVSSHVVFLHQGRIEEQ 235
|
250
....*....|..
gi 1469306817 220 ----TVQQNPVS 227
Cdd:COG4598 236 gppaEVFGNPKS 247
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
16-215 |
2.02e-42 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 143.34 E-value: 2.02e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 16 GDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGR----DVSSANEAQLVEYRRADVGFVF 91
Cdd:COG4778 20 GGKRLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRHDggwvDLAQASPREILALRRRTIGYVS 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 92 QFYNLVPNLTALENVE---LAAQICPDS--LDAEQTLRQVGLGDRL-ANFPAQLSGGEQQRVSIARALAKNPKLLLCDEP 165
Cdd:COG4778 100 QFLRVIPRVSALDVVAeplLERGVDREEarARARELLARLNLPERLwDLPPATFSGGEQQRVNIARGFIADPPLLLLDEP 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1469306817 166 TGALDYKTGKQILQLLQDtCRKQGITVIIITHN-SALAPMADRLIRFKSGR 215
Cdd:COG4778 180 TASLDAANRAVVVELIEE-AKARGTAIIGIFHDeEVREAVADRVVDVTPFS 229
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
4-208 |
2.92e-42 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 142.23 E-value: 2.92e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEgdaRIhALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAqlveyR 83
Cdd:COG4133 3 LEAENLSCRRGE---RL-LFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDARED-----Y 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVPNLTALENVELAAQI---CPDSLDAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLL 160
Cdd:COG4133 74 RRRLAYLGHADGLKPELTVRENLRFWAALyglRADREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLW 153
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1469306817 161 LCDEPTGALDYKTGKQILQLLQDTCRKQGItVIIITHNSALAPMADRL 208
Cdd:COG4133 154 LLDEPFTALDAAGVALLAELIAAHLARGGA-VLLTTHQPLELAAARVL 200
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
18-207 |
4.02e-42 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 145.26 E-value: 4.02e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 18 ARIHALDGASFTVERGE-LAIIlGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYRRaDVGFVFQ--FY 94
Cdd:COG4608 29 GVVKAVDGVSFDIRRGEtLGLV-GESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGLSGRELRPLRR-RMQMVFQdpYA 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 95 NLVPNLT-------ALENVELAAqicPDSLD--AEQTLRQVGLGDRLAN-FPAQLSGGEQQRVSIARALAKNPKLLLCDE 164
Cdd:COG4608 107 SLNPRMTvgdiiaePLRIHGLAS---KAERRerVAELLELVGLRPEHADrYPHEFSGGQRQRIGIARALALNPKLIVCDE 183
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1469306817 165 PTGALDYKTGKQILQLLQDTCRKQGITVIIITHN-SALAPMADR 207
Cdd:COG4608 184 PVSALDVSIQAQVLNLLEDLQDELGLTYLFISHDlSVVRHISDR 227
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
4-216 |
4.84e-42 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 142.85 E-value: 4.84e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGdariHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGR--DVSSA-NEAQLV 80
Cdd:PRK11124 3 IQLNGINCFYGAH----QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNhfDFSKTpSDKAIR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 81 EYRRaDVGFVFQFYNLVPNLTALEN-VELAAQICPDSLD-----AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALA 154
Cdd:PRK11124 79 ELRR-NVGMVFQQYNLWPHLTVQQNlIEAPCRVLGLSKDqalarAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALM 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 155 KNPKLLLCDEPTGALDYKTGKQ---ILQLLQDTcrkqGITVIIITHNSALA-PMADRLIRFKSGRV 216
Cdd:PRK11124 158 MEPQVLLFDEPTAALDPEITAQivsIIRELAET----GITQVIVTHEVEVArKTASRVVYMENGHI 219
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
22-216 |
1.18e-41 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 144.86 E-value: 1.18e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 22 ALDgASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRD-VSSANEAQLVEYRRAdVGFVFQFYNLVPNL 100
Cdd:COG4148 15 TLD-VDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVlQDSARGIFLPPHRRR-IGYVFQEARLFPHL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 101 TALENVELAAQICP---DSLDAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQI 177
Cdd:COG4148 93 SVRGNLLYGRKRAPraeRRISFDEVVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLARKAEI 172
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1469306817 178 LQLLQDTCRKQGITVIIITHNSA-LAPMADRLIRFKSGRV 216
Cdd:COG4148 173 LPYLERLRDELDIPILYVSHSLDeVARLADHVVLLEQGRV 212
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
4-219 |
1.76e-41 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 142.18 E-value: 1.76e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARihALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSsaNEAQLVEYR 83
Cdd:TIGR04520 1 IEVENVSFSYPESEKP--ALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGLDTL--DEENLWEIR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RAdVGFVFQfyN----LVPNLTA------LENvelaAQICPDSLDA--EQTLRQVGLGDRLANFPAQLSGGEQQRVSIAR 151
Cdd:TIGR04520 77 KK-VGMVFQ--NpdnqFVGATVEddvafgLEN----LGVPREEMRKrvDEALKLVGMEDFRDREPHLLSGGQKQRVAIAG 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1469306817 152 ALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAPMADRLIRFKSGRVESE 219
Cdd:TIGR04520 150 VLAMRPDIIILDEATSMLDPKGRKEVLETIRKLNKEEGITVISITHDMEEAVLADRVIVMNKGKIVAE 217
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
5-198 |
1.90e-41 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 140.36 E-value: 1.90e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 5 EFKDVIKAYGEGdariHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVssaneaqlvEYRR 84
Cdd:cd03235 1 EVEDLTVSYGGH----PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPL---------EKER 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 85 ADVGFVFQFYNLVPN--LTALENVELAAQI---------CPDSLDAEQTLRQVGLGDrLANFP-AQLSGGEQQRVSIARA 152
Cdd:cd03235 68 KRIGYVPQRRSIDRDfpISVRDVVLMGLYGhkglfrrlsKADKAKVDEALERVGLSE-LADRQiGELSGGQQQRVLLARA 146
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1469306817 153 LAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKqGITVIIITHN 198
Cdd:cd03235 147 LVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE-GMTILVVTHD 191
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
23-227 |
3.49e-41 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 140.55 E-value: 3.49e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEaqlvEYRraDVGFVFQFYNLVPNLTA 102
Cdd:cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP----EKR--DISYVPQNYALFPHMTV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 103 LENVE--LAAQICPDSLDAEQTL---RQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQI 177
Cdd:cd03299 89 YKNIAygLKKRKVDKKEIERKVLeiaEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKL 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1469306817 178 LQLLQDTCRKQGITVIIITHN-SALAPMADRLIRFKSGRVES----ETVQQNPVS 227
Cdd:cd03299 169 REELKKIRKEFGVTVLHVTHDfEEAWALADKVAIMLNGKLIQvgkpEEVFKKPKN 223
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1-216 |
8.82e-41 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 139.35 E-value: 8.82e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 1 MAYIEFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLV 80
Cdd:COG0410 1 MPMLEVENLHAGYGG----IHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 81 eyrRADVGFVFQFYNLVPNLTALENVELAAQICPDSLDAEQTLRQVG-----LGDRLANFPAQLSGGEQQRVSIARALAK 155
Cdd:COG0410 77 ---RLGIGYVPEGRRIFPSLTVEENLLLGAYARRDRAEVRADLERVYelfprLKERRRQRAGTLSGGEQQMLAIGRALMS 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1469306817 156 NPKLLLCDEPTGALDYKTGKQILQLLQDTcRKQGITVIIITHNSALA-PMADRLIRFKSGRV 216
Cdd:COG0410 154 RPKLLLLDEPSLGLAPLIVEEIFEIIRRL-NREGVTILLVEQNARFAlEIADRAYVLERGRI 214
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
23-214 |
1.16e-40 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 138.75 E-value: 1.16e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVeyrradvgfVFQFYNLVPNLTA 102
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMV---------VFQNYSLLPWLTV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 103 LENVELAA-QICPDSLDAEQ------TLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGK 175
Cdd:TIGR01184 72 RENIALAVdRVLPDLSKSERraiveeHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1469306817 176 QILQLLQDTCRKQGITVIIITH--NSALApMADRLIRFKSG 214
Cdd:TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHdvDEALL-LSDRVVMLTNG 191
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
4-216 |
2.53e-40 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 145.31 E-value: 2.53e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDariHALDGASFTVERGE-LAIIlGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLvey 82
Cdd:COG1132 340 IEFENVSFSYPGDR---PVLKDISLTIPPGEtVALV-GPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTLESL--- 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 83 rRADVGFVFQ----FynlvpNLTALENVELAAqicPDSLDAE--QTLRQVGLGDRLANFP-----------AQLSGGEQQ 145
Cdd:COG1132 413 -RRQIGVVPQdtflF-----SGTIRENIRYGR---PDATDEEveEAAKAAQAHEFIEALPdgydtvvgergVNLSGGQRQ 483
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1469306817 146 RVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDtcRKQGITVIIITHNSALAPMADRLIRFKSGRV 216
Cdd:COG1132 484 RIAIARALLKDPPILILDEATSALDTETEALIQEALER--LMKGRTTIVIAHRLSTIRNADRILVLDDGRI 552
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
4-216 |
3.51e-40 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 138.68 E-value: 3.51e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDAR-IHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSsaneaQLVEY 82
Cdd:COG1101 2 LELKNLSKTFNPGTVNeKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVT-----KLPEY 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 83 RRA-DVGFVFQ--FYNLVPNLTALENVELAAQ--------ICPDSLDAEQ---TLRQVGLG--DRLANFPAQLSGGEQQR 146
Cdd:COG1101 77 KRAkYIGRVFQdpMMGTAPSMTIEENLALAYRrgkrrglrRGLTKKRRELfreLLATLGLGleNRLDTKVGLLSGGQRQA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1469306817 147 VSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHN--SALApMADRLIRFKSGRV 216
Cdd:COG1101 157 LSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHNmeQALD-YGNRLIMMHEGRI 227
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
4-198 |
8.80e-40 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 136.48 E-value: 8.80e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGdaRIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSaneaQLVEYR 83
Cdd:cd03263 1 LQIRNLTKTYKKG--TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT----DRKAAR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RaDVGFVFQFYNLVPNLTALENVELAAQIC-----PDSLDAEQTLRQVGLG---DRLANfpaQLSGGEQQRVSIARALAK 155
Cdd:cd03263 75 Q-SLGYCPQFDALFDELTVREHLRFYARLKglpksEIKEEVELLLRVLGLTdkaNKRAR---TLSGGMKRKLSLAIALIG 150
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1469306817 156 NPKLLLCDEPTGALDYKTGKQILQLLQDTcrKQGITVIIITHN 198
Cdd:cd03263 151 GPSVLLLDEPTSGLDPASRRAIWDLILEV--RKGRSIILTTHS 191
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
4-216 |
1.15e-39 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 136.16 E-value: 1.15e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDariHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQlVEYR 83
Cdd:PRK10908 2 IRFEHVSKAYLGGR---QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNRE-VPFL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVPNLTALENVELAAQICPDSLD-----AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPK 158
Cdd:PRK10908 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDdirrrVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPA 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 159 LLLCDEPTGALDYKTGKQILQLLQDTCRkQGITVIIITHNSAL-APMADRLIRFKSGRV 216
Cdd:PRK10908 158 VLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDIGLiSRRSYRMLTLSDGHL 215
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
22-198 |
1.65e-39 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 136.75 E-value: 1.65e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 22 ALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANeaqlveyrrADVGFVFQFYNLVPNLT 101
Cdd:PRK11248 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPG---------AERGVVFQNEGLLPWRN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 102 ALENVELAAQICPDSLD-----AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQ 176
Cdd:PRK11248 87 VQDNVAFGLQLAGVEKMqrleiAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ 166
|
170 180
....*....|....*....|..
gi 1469306817 177 ILQLLQDTCRKQGITVIIITHN 198
Cdd:PRK11248 167 MQTLLLKLWQETGKQVLLITHD 188
|
|
| tungstate_WtpC |
NF040840 |
tungstate ABC transporter ATP-binding protein WtpC; |
27-227 |
3.77e-38 |
|
tungstate ABC transporter ATP-binding protein WtpC;
Pssm-ID: 468779 [Multi-domain] Cd Length: 347 Bit Score: 135.59 E-value: 3.77e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 27 SFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEaqlvEYRraDVGFVFQFYNLVPNLTALENV 106
Cdd:NF040840 20 SLEVKEGEYFIILGPSGAGKTVLLELIAGIWPPDSGKIYLDGKDITNLPP----EKR--GIAYVYQNYMLFPHKTVFENI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 107 ELAAQIcpDSLDAEQTLRQV-------GLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQ 179
Cdd:NF040840 94 AFGLKL--RKVPKEEIERKVkeimellGISHLLHRKPRTLSGGEQQRVALARALIIEPKLLLLDEPLSALDVQTRDELIR 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1469306817 180 LLQDTCRKQGITVIIITHN--SALApMADRLIRFKSGRV----ESETVQQNPVS 227
Cdd:NF040840 172 EMKRWHREFGFTAIHVTHNfeEALS-LADRVGIMLNGRLsqvgDVREVFRRPKN 224
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
21-219 |
5.99e-38 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 135.24 E-value: 5.99e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 21 HALDgASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDV-SSANEAQLVEYRRAdVGFVFQFYNLVPN 99
Cdd:TIGR02142 12 FSLD-ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLfDSRKGIFLPPEKRR-IGYVFQEARLFPH 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 100 LTALENVELAAQIC-PDSLDA--EQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQ 176
Cdd:TIGR02142 90 LSVRGNLRYGMKRArPSERRIsfERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYE 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1469306817 177 ILQLLQDTCRKQGITVIIITHN-SALAPMADRLIRFKSGRVESE 219
Cdd:TIGR02142 170 ILPYLERLHAEFGIPILYVSHSlQEVLRLADRVVVLEDGRVAAA 213
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
4-217 |
1.74e-37 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 134.06 E-value: 1.74e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGegdaRIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSaneaqlVEYR 83
Cdd:PRK10851 3 IEIANIKKSFG----RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSR------LHAR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVPNLTALENVELAAQICP-------DSLDAE--QTLRQVGLGdRLAN-FPAQLSGGEQQRVSIARAL 153
Cdd:PRK10851 73 DRKVGFVFQHYALFRHMTVFDNIAFGLTVLPrrerpnaAAIKAKvtQLLEMVQLA-HLADrYPAQLSGGQKQRVALARAL 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1469306817 154 AKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALA-PMADRLIRFKSGRVE 217
Cdd:PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAmEVADRVVVMSQGNIE 216
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
4-210 |
2.06e-37 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 136.65 E-value: 2.06e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDArihALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLveyr 83
Cdd:TIGR02857 322 LEFSGVSVAYPGRRP---ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW---- 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVPNlTALENVELAaqiCPDSLDAE--QTLRQVGLGDRLANFP-----------AQLSGGEQQRVSIA 150
Cdd:TIGR02857 395 RDQIAWVPQHPFLFAG-TIAENIRLA---RPDASDAEirEALERAGLDEFVAALPqgldtpigeggAGLSGGQAQRLALA 470
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 151 RALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCrkQGITVIIITHNSALAPMADRLIR 210
Cdd:TIGR02857 471 RAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALA--QGRTVLLVTHRLALAALADRIVV 528
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
4-216 |
3.34e-37 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 129.63 E-value: 3.34e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGegDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLveyr 83
Cdd:cd03245 3 IEFRNVSFSYP--NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADL---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQ----FYNlvpnlTALENVELAaqiCPDSLDAE--QTLRQVGLGDRLANFP-----------AQLSGGEQQR 146
Cdd:cd03245 77 RRNIGYVPQdvtlFYG-----TLRDNITLG---APLADDERilRAAELAGVTDFVNKHPngldlqigergRGLSGGQRQA 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 147 VSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRkqGITVIIITHNSALAPMADRLIRFKSGRV 216
Cdd:cd03245 149 VALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
|
| 3a0107s01c2 |
TIGR00972 |
phosphate ABC transporter, ATP-binding protein; This model represents the ATP-binding protein ... |
4-230 |
3.62e-37 |
|
phosphate ABC transporter, ATP-binding protein; This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. [Transport and binding proteins, Anions]
Pssm-ID: 273372 [Multi-domain] Cd Length: 247 Bit Score: 130.49 E-value: 3.62e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGdariHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATF-----GTVTVDGRDVSSaNEAQ 78
Cdd:TIGR00972 2 IEIENLNLFYGEK----EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPgvrieGKVLFDGQDIYD-KKID 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 79 LVEYRRaDVGFVFQFYNLVPnLTALENVELAAQI----CPDSLD--AEQTLRQVGL----GDRLANFPAQLSGGEQQRVS 148
Cdd:TIGR00972 77 VVELRR-RVGMVFQKPNPFP-MSIYDNIAYGPRLhgikDKKELDeiVEESLKKAALwdevKDRLHDSALGLSGGQQQRLC 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 149 IARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTcrKQGITVIIITHNSALAP-MADRLIRFKSGRV--ESETVQ--Q 223
Cdd:TIGR00972 155 IARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL--KKKYTIVIVTHNMQQAArISDRTAFFYDGELveYGPTEQifT 232
|
....*..
gi 1469306817 224 NPVSIET 230
Cdd:TIGR00972 233 NPKEKRT 239
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
4-227 |
4.05e-37 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 133.42 E-value: 4.05e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYgEGdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSsaneaQLVEYR 83
Cdd:PRK11607 20 LEIRNLTKSF-DG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS-----HVPPYQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RAdVGFVFQFYNLVPNLTALENV------------ELAAQIcpdsldaEQTLRQVGLGDRLANFPAQLSGGEQQRVSIAR 151
Cdd:PRK11607 91 RP-INMMFQSYALFPHMTVEQNIafglkqdklpkaEIASRV-------NEMLGLVHMQEFAKRKPHQLSGGQRQRVALAR 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 152 ALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALA-PMADRLIRFKSGRV----ESETVQQNPV 226
Cdd:PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAmTMAGRIAIMNRGKFvqigEPEEIYEHPT 242
|
.
gi 1469306817 227 S 227
Cdd:PRK11607 243 T 243
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
23-216 |
4.39e-37 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 129.70 E-value: 4.39e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGGMD---TATFGTVTVDGRdvssANEAQLVEYRradVGFVFQFYNLVPN 99
Cdd:cd03234 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVeggGTTSGQILFNGQ----PRKPDQFQKC---VAYVRQDDILLPG 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 100 LTALENVELAAQI---------CPDSLDAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALD 170
Cdd:cd03234 96 LTVRETLTYTAILrlprkssdaIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1469306817 171 YKTGKQILQLLQDTCRKqGITVIIITHN--SALAPMADRLIRFKSGRV 216
Cdd:cd03234 176 SFTALNLVSTLSQLARR-NRIVILTIHQprSDLFRLFDRILLLSSGEI 222
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
4-216 |
5.91e-37 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 128.49 E-value: 5.91e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGdariHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAqlveYR 83
Cdd:cd03268 1 LKTNDLTKTYGKK----RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEA----LR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RadVGFVFQFYNLVPNLTALENVELAAQI--CPDSlDAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLL 161
Cdd:cd03268 73 R--IGALIEAPGFYPNLTARENLRLLARLlgIRKK-RIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLI 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 162 CDEPTGALDYKTGKQILQLLQDTcRKQGITVIIITHN-SALAPMADRLIRFKSGRV 216
Cdd:cd03268 150 LDEPTNGLDPDGIKELRELILSL-RDQGITVLISSHLlSEIQKVADRIGIINKGKL 204
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
27-216 |
7.30e-37 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 129.32 E-value: 7.30e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 27 SFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQlveyrRAdVGFVFQFYNLVPNLTALENV 106
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSR-----RP-VSMLFQENNLFSHLTVAQNI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 107 ELAaqICPD-SLDAEQ------TLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQ 179
Cdd:PRK10771 93 GLG--LNPGlKLNAAQreklhaIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLT 170
|
170 180 190
....*....|....*....|....*....|....*...
gi 1469306817 180 LLQDTCRKQGITVIIITHN-SALAPMADRLIRFKSGRV 216
Cdd:PRK10771 171 LVSQVCQERQLTLLMVSHSlEDAARIAPRSLVVADGRI 208
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
23-216 |
8.47e-37 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 129.85 E-value: 8.47e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEyRRA------DVGFVFqfynl 96
Cdd:COG4559 17 LDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWELAR-RRAvlpqhsSLAFPF----- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 97 vpnlTALENVEL--AAQICPDSLD---AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALA-------KNPKLLLCDE 164
Cdd:COG4559 91 ----TVEEVVALgrAPHGSSAAQDrqiVREALALVGLAHLAGRSYQTLSGGEQQRVQLARVLAqlwepvdGGPRWLFLDE 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1469306817 165 PTGALDYKTGKQILQLLQDTCRkQGITVIIITHNSALAPM-ADRLIRFKSGRV 216
Cdd:COG4559 167 PTSALDLAHQHAVLRLARQLAR-RGGGVVAVLHDLNLAAQyADRILLLHQGRL 218
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1-225 |
1.36e-36 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 129.10 E-value: 1.36e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 1 MAYIEFKDVIKAYgEGDARIHALDgasFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSA----NE 76
Cdd:PRK11264 1 MSAIEVKNLVKKF-HGQTVLHGID---LEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTArslsQQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 77 AQLVEYRRADVGFVFQFYNLVPNLTALENVELAAQICPDSLDAEQT------LRQVGLGDRLANFPAQLSGGEQQRVSIA 150
Cdd:PRK11264 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATararelLAKVGLAGKETSYPRRLSGGQQQRVAIA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 151 RALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGiTVIIITHNSALA-PMADRLIRFKSGRVesetVQQNP 225
Cdd:PRK11264 157 RALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKR-TMVIVTHEMSFArDVADRAIFMDQGRI----VEQGP 227
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
4-197 |
1.61e-36 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 133.99 E-value: 1.61e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGegdaRIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDV--SSANEAQlve 81
Cdd:COG1129 5 LEMRGISKSFG----GVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVrfRSPRDAQ--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 82 yrRADVGFVFQFYNLVPNLTALENVELAAQICPDSL--------DAEQTLRQVGLG---DRLAnfpAQLSGGEQQRVSIA 150
Cdd:COG1129 78 --AAGIAIIHQELNLVPNLSVAENIFLGREPRRGGLidwramrrRARELLARLGLDidpDTPV---GDLSVAQQQLVEIA 152
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1469306817 151 RALAKNPKLLLCDEPTGALdykTGKQILQLLQ--DTCRKQGITVIIITH 197
Cdd:COG1129 153 RALSRDARVLILDEPTASL---TEREVERLFRiiRRLKAQGVAIIYISH 198
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
4-216 |
1.75e-36 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 126.00 E-value: 1.75e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVS--SANEAqlve 81
Cdd:cd03216 1 LELRGITKRFGG----VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSfaSPRDA---- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 82 yRRADVGFVFQfynlvpnltalenvelaaqicpdsldaeqtlrqvglgdrlanfpaqLSGGEQQRVSIARALAKNPKLLL 161
Cdd:cd03216 73 -RRAGIAMVYQ----------------------------------------------LSVGERQMVEIARALARNARLLI 105
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 162 CDEPTGALDYKTGKQILQLLQDTcRKQGITVIIITHN-SALAPMADRLIRFKSGRV 216
Cdd:cd03216 106 LDEPTAALTPAEVERLFKVIRRL-RAQGVAVIFISHRlDEVFEIADRVTVLRDGRV 160
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
16-219 |
2.93e-36 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 128.35 E-value: 2.93e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 16 GDARIhaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEyRRA------DVGF 89
Cdd:PRK13548 13 GGRTL--LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELAR-RRAvlpqhsSLSF 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 90 VFqfynlvpnlTALENVELAAQICPDSLD-----AEQTLRQVGLGDrLAN--FPaQLSGGEQQRVSIARALA------KN 156
Cdd:PRK13548 90 PF---------TVEEVVAMGRAPHGLSRAeddalVAAALAQVDLAH-LAGrdYP-QLSGGEQQRVQLARVLAqlwepdGP 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1469306817 157 PKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAPM-ADRLIRFKSGRVESE 219
Cdd:PRK13548 159 PRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARyADRIVLLHQGRLVAD 222
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
4-219 |
5.45e-36 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 126.72 E-value: 5.45e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSanEAQLVeyr 83
Cdd:cd03265 1 IEVENLVKKYGD----FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR--EPREV--- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVPNLTALENVELAAQICPDSLD-----AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPK 158
Cdd:cd03265 72 RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAerrerIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPE 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1469306817 159 LLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAPM-ADRLIRFKSGRVESE 219
Cdd:cd03265 152 VLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQlCDRVAIIDHGRIIAE 213
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
4-197 |
9.85e-36 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 131.69 E-value: 9.85e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDV--SSANEAqlve 81
Cdd:COG3845 6 LELRGITKRFGG----VVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVriRSPRDA---- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 82 yRRADVGFVFQFYNLVPNLTALENVELAA----QICPDSLDAEQTLRQvgLGDRLaNFP-------AQLSGGEQQRVSIA 150
Cdd:COG3845 78 -IALGIGMVHQHFMLVPNLTVAENIVLGLeptkGGRLDRKAARARIRE--LSERY-GLDvdpdakvEDLSVGEQQRVEIL 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1469306817 151 RALAKNPKLLLCDEPTGALdykTGKQILQLLqDTCRK---QGITVIIITH 197
Cdd:COG3845 154 KALYRGARILILDEPTAVL---TPQEADELF-EILRRlaaEGKSIIFITH 199
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
7-216 |
6.96e-35 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 124.79 E-value: 6.96e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 7 KDVIKAYGEGDArihaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTvdgrdvssANEAQLVEYRRaD 86
Cdd:PRK11247 16 NAVSKRYGERTV----LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL--------AGTAPLAEARE-D 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 87 VGFVFQFYNLVPNLTALENVELAaqicpdsL------DAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLL 160
Cdd:PRK11247 83 TRLMFQDARLLPWKKVIDNVGLG-------LkgqwrdAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLL 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1469306817 161 LCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHN-SALAPMADRLIRFKSGRV 216
Cdd:PRK11247 156 LLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDvSEAVAMADRVLLIEEGKI 212
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
4-216 |
7.07e-35 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 122.32 E-value: 7.07e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIhaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLveyr 83
Cdd:cd03246 1 LEVENVSFRYPGAEPPV--LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNEL---- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVPNlTALENVelaaqicpdsldaeqtlrqvglgdrlanfpaqLSGGEQQRVSIARALAKNPKLLLCD 163
Cdd:cd03246 75 GDHVGYLPQDDELFSG-SIAENI--------------------------------LSGGQRQRLGLARALYGNPRILVLD 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1469306817 164 EPTGALDYKTGKQILQLLQDTcRKQGITVIIITHNSALAPMADRLIRFKSGRV 216
Cdd:cd03246 122 EPNSHLDVEGERALNQAIAAL-KAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
1-216 |
1.13e-34 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 122.27 E-value: 1.13e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 1 MAYIEFKDVIKAYGEGDARIHA--LDGASFTVERGELAIILGASGAGKTTALNILGG--MDTATFGTVTVDGRDVSsane 76
Cdd:cd03213 1 GVTLSFRNLTVTVKSSPSKSGKqlLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGrrTGLGVSGEVLINGRPLD---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 77 aqLVEYRRAdVGFVFQFYNLVPNLTALENVELAAQicpdsldaeqtLRQvglgdrlanfpaqLSGGEQQRVSIARALAKN 156
Cdd:cd03213 77 --KRSFRKI-IGYVPQDDILHPTLTVRETLMFAAK-----------LRG-------------LSGGERKRVSIALELVSN 129
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1469306817 157 PKLLLCDEPTGALDYKTGKQILQLLQDTCrKQGITVIIITH--NSALAPMADRLIRFKSGRV 216
Cdd:cd03213 130 PSLLFLDEPTSGLDSSSALQVMSLLRRLA-DTGRTIICSIHqpSSEIFELFDKLLLLSQGRV 190
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
4-216 |
1.67e-34 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 122.30 E-value: 1.67e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGdariHALDGASFTVERGELAIiLGASGAGKTTALNILGGMDTATFGTVTVDGRDVSsaneAQLVEYR 83
Cdd:cd03264 1 LQLENLTKRYGKK----RALDGVSLTLGPGMYGL-LGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVL----KQPQKLR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RAdVGFVFQFYNLVPNLTALENVELAAQI--CPDS-LDA--EQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPK 158
Cdd:cd03264 72 RR-IGYLPQEFGVYPNFTVREFLDYIAWLkgIPSKeVKArvDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPS 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 159 LLLCDEPTGALDYKTGKQILQLLQDTcrKQGITVIIITHN-SALAPMADRLIRFKSGRV 216
Cdd:cd03264 151 ILIVDEPTAGLDPEERIRFRNLLSEL--GEDRIVILSTHIvEDVESLCNQVAVLNKGKL 207
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
27-211 |
2.01e-34 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 122.21 E-value: 2.01e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 27 SFTVERGELAIILGASGAGKTTALNILGGMDTATF---GTVTVDGRDVSSANeaqlVEYRRadVGFVFQFYNLVPNLTAL 103
Cdd:COG4136 21 SLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAFsasGEVLLNGRRLTALP----AEQRR--IGILFQDDLLFPHLSVG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 104 ENVELAAqicPDSLD-------AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQ 176
Cdd:COG4136 95 ENLAFAL---PPTIGraqrrarVEQALEEAGLAGFADRDPATLSGGQRARVALLRALLAEPRALLLDEPFSKLDAALRAQ 171
|
170 180 190
....*....|....*....|....*....|....*
gi 1469306817 177 ILQLLQDTCRKQGITVIIITHNSALAPMADRLIRF 211
Cdd:COG4136 172 FREFVFEQIRQRGIPALLVTHDEEDAPAAGRVLDL 206
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
4-198 |
6.58e-34 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 122.07 E-value: 6.58e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEgdarIHALDGASFTVERGE-LAIIlGASGAGKTTALNILGGM-----DTATFGTVTVDGRDVSsANEA 77
Cdd:COG1117 12 IEVRNLNVYYGD----KQALKDINLDIPENKvTALI-GPSGCGKSTLLRCLNRMndlipGARVEGEILLDGEDIY-DPDV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 78 QLVEYRRaDVGFVFQfynlVPN---LTALENVELAAQI----CPDSLDA--EQTLRQVGL----GDRLANFPAQLSGGEQ 144
Cdd:COG1117 86 DVVELRR-RVGMVFQ----KPNpfpKSIYDNVAYGLRLhgikSKSELDEivEESLRKAALwdevKDRLKKSALGLSGGQQ 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1469306817 145 QRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTcrKQGITVIIITHN 198
Cdd:COG1117 161 QRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILEL--KKDYTIVIVTHN 212
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
4-216 |
9.86e-34 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 120.55 E-value: 9.86e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQlveyr 83
Cdd:cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEA----- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVPNLTALENVELAAQ---ICPDSLDA--EQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPK 158
Cdd:cd03266 77 RRRLGFVSDSTGLYDRLTARENLEYFAGlygLKGDELTArlEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPP 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 159 LLLCDEPTGALDYKTGKQILQLLQDTCRkQGITVIIITHN-SALAPMADRLIRFKSGRV 216
Cdd:cd03266 157 VLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHImQEVERLCDRVVVLHRGRV 214
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
4-216 |
1.00e-33 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 121.18 E-value: 1.00e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYgegDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSsanEAQLVEYR 83
Cdd:cd03253 1 IEFENVTFAY---DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIR---EVTLDSLR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RAdVGFVFQFYNLVpNLTALENVELAaqiCPDSLDAEQ--TLRQVGLGDRLANFPAQ-----------LSGGEQQRVSIA 150
Cdd:cd03253 75 RA-IGVVPQDTVLF-NDTIGYNIRYG---RPDATDEEVieAAKAAQIHDKIMRFPDGydtivgerglkLSGGEKQRVAIA 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 151 RALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRkqGITVIIITHNSALAPMADRLIRFKSGRV 216
Cdd:cd03253 150 RAILKNPPILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLSTIVNADKIIVLKDGRI 213
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
4-216 |
1.02e-33 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 122.02 E-value: 1.02e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDAriHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANeaqlVEYR 83
Cdd:PRK13632 8 IKVENVSFSYPNSEN--NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKEN----LKEI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQfyNlvPN-----LTA-------LENvelaAQICPDSLDA--EQTLRQVGLGDRLANFPAQLSGGEQQRVSI 149
Cdd:PRK13632 82 RKKIGIIFQ--N--PDnqfigATVeddiafgLEN----KKVPPKKMKDiiDDLAKKVGMEDYLDKEPQNLSGGQKQRVAI 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1469306817 150 ARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAPMADRLIRFKSGRV 216
Cdd:PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKL 220
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
4-216 |
1.51e-33 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 120.67 E-value: 1.51e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGeGDARIhALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLveyr 83
Cdd:cd03252 1 ITFEHVRFRYK-PDGPV-ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWL---- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQfYNLVPNLTALENVELAAQiCPDSLDAEQTLRQVGLGDRLANFP-----------AQLSGGEQQRVSIARA 152
Cdd:cd03252 75 RRQVGVVLQ-ENVLFNRSIRDNIALADP-GMSMERVIEAAKLAGAHDFISELPegydtivgeqgAGLSGGQRQRIAIARA 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1469306817 153 LAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCrkQGITVIIITHNSALAPMADRLIRFKSGRV 216
Cdd:cd03252 153 LIHNPRILIFDEATSALDYESEHAIMRNMHDIC--AGRTVIIIAHRLSTVKNADRIIVMEKGRI 214
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
23-216 |
2.38e-33 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 119.28 E-value: 2.38e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANeaqlveyRRADVGFVFQ--FYNLVPNl 100
Cdd:cd03226 16 LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKE-------RRKSIGYVMQdvDYQLFTD- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 101 TALENVELAAQICPDSL-DAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQ 179
Cdd:cd03226 88 SVREELLLGLKELDAGNeQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGE 167
|
170 180 190
....*....|....*....|....*....|....*...
gi 1469306817 180 LLqDTCRKQGITVIIITHNSALAPM-ADRLIRFKSGRV 216
Cdd:cd03226 168 LI-RELAAQGKAVIVITHDYEFLAKvCDRVLLLANGAI 204
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
4-223 |
3.17e-33 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 125.71 E-value: 3.17e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDAriHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLveyr 83
Cdd:PRK11160 339 LTLNNVSFTYPDQPQ--PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAAL---- 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVpNLTALENVELAaqiCPDSLDAE--QTLRQVGLGDRLANFPA----------QLSGGEQQRVSIAR 151
Cdd:PRK11160 413 RQAISVVSQRVHLF-SATLRDNLLLA---APNASDEAliEVLQQVGLEKLLEDDKGlnawlgeggrQLSGGEQRRLGIAR 488
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1469306817 152 ALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCrkQGITVIIITHN-SALAPMaDRLIRFKSGR-VESETVQQ 223
Cdd:PRK11160 489 ALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRlTGLEQF-DRICVMDNGQiIEQGTHQE 559
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
8-219 |
6.28e-33 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 119.69 E-value: 6.28e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 8 DVIKAYGEGDArihaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSA--NEAQL------ 79
Cdd:PRK10619 10 DLHKRYGEHEV----LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVrdKDGQLkvadkn 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 80 -VEYRRADVGFVFQFYNLVPNLTALENV-ELAAQICPDSLD-----AEQTLRQVGLGDRL-ANFPAQLSGGEQQRVSIAR 151
Cdd:PRK10619 86 qLRLLRTRLTMVFQHFNLWSHMTVLENVmEAPIQVLGLSKQearerAVKYLAKVGIDERAqGKYPVHLSGGQQQRVSIAR 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 152 ALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCrKQGITVIIITHNSALAP-MADRLIRFKSGRVESE 219
Cdd:PRK10619 166 ALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLA-EEGKTMVVVTHEMGFARhVSSHVIFLHQGKIEEE 233
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
4-216 |
2.31e-32 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 117.64 E-value: 2.31e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYgegDAR--IHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANeaqlVE 81
Cdd:cd03249 1 IEFKNVSFRY---PSRpdVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLN----LR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 82 YRRADVGFVFQfynlVPNL---TALENVELAAQICPDSlDAEQTLRQVGLGDRLANFP-----------AQLSGGEQQRV 147
Cdd:cd03249 74 WLRSQIGLVSQ----EPVLfdgTIAENIRYGKPDATDE-EVEEAAKKANIHDFIMSLPdgydtlvgergSQLSGGQKQRI 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 148 SIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRkqGITVIIITHNSALAPMADRLIRFKSGRV 216
Cdd:cd03249 149 AIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMK--GRTTIVIAHRLSTIRNADLIAVLQNGQV 215
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
1-219 |
2.56e-32 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 118.68 E-value: 2.56e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 1 MAY-IEFKDVIKAYGEGDariHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQL 79
Cdd:PRK13647 1 MDNiIEVEDLHFRYKDGT---KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 80 veyrRADVGFVFQFY-NLVPNLTALENVELAAQ---ICPDSLD--AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARAL 153
Cdd:PRK13647 78 ----RSKVGLVFQDPdDQVFSSTVWDDVAFGPVnmgLDKDEVErrVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1469306817 154 AKNPKLLLCDEPTGALDYKtGKQILQLLQDTCRKQGITVIIITHNSALA-PMADRLIRFKSGRVESE 219
Cdd:PRK13647 154 AMDPDVIVLDEPMAYLDPR-GQETLMEILDRLHNQGKTVIVATHDVDLAaEWADQVIVLKEGRVLAE 219
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
4-216 |
2.67e-32 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 117.88 E-value: 2.67e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGegDARIhaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFG-TVTVDGRDVSSANEAQLvey 82
Cdd:COG1119 4 LELRNVTVRRG--GKTI--LDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLFGERRGGEDVWEL--- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 83 rRADVGFV--FQFYNLVPNLTALE--------NVELAAQICPDSLD-AEQTLRQVGLGDrLANFP-AQLSGGEQQRVSIA 150
Cdd:COG1119 77 -RKRIGLVspALQLRFPRDETVLDvvlsgffdSIGLYREPTDEQRErARELLELLGLAH-LADRPfGTLSQGEQRRVLIA 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1469306817 151 RALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAPMA-DRLIRFKSGRV 216
Cdd:COG1119 155 RALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIPPGiTHVLLLKDGRV 221
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
7-216 |
3.09e-32 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 117.72 E-value: 3.09e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 7 KDVIKAYGegdaRIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGR-----DVSSANEAQLVE 81
Cdd:PRK11701 10 RGLTKLYG----PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRdgqlrDLYALSEAERRR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 82 YRRADVGFVFQfyN----LVPNLTALENV-------------ELAAQicpdsldAEQTLRQVGLG-DRLANFPAQLSGGE 143
Cdd:PRK11701 86 LLRTEWGFVHQ--HprdgLRMQVSAGGNIgerlmavgarhygDIRAT-------AGDWLERVEIDaARIDDLPTTFSGGM 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1469306817 144 QQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAPM-ADRLIRFKSGRV 216
Cdd:PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLlAHRLLVMKQGRV 230
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
4-219 |
1.64e-31 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 116.65 E-value: 1.64e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARihALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLveyr 83
Cdd:PRK13635 6 IRVEHISFRYPDAATY--ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDV---- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQ-----FY--------------NLVPNLTALENVELAaqicpdsldaeqtLRQVGLGDRLANFPAQLSGGEQ 144
Cdd:PRK13635 80 RRQVGMVFQnpdnqFVgatvqddvafglenIGVPREEMVERVDQA-------------LRQVGMEDFLNREPHRLSGGQK 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1469306817 145 QRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAPMADRLIRFKSGRVESE 219
Cdd:PRK13635 147 QRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEE 221
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
8-225 |
1.83e-31 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 117.37 E-value: 1.83e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 8 DVIKAYGEGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQlVEYRRADV 87
Cdd:PRK11308 16 PVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEA-QKLLRQKI 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 88 GFVFQ--FYNLVP----------------NLTALENVELAAQIcpdsldaeqtLRQVGL----GDRlanFPAQLSGGEQQ 145
Cdd:PRK11308 95 QIVFQnpYGSLNPrkkvgqileepllintSLSAAERREKALAM----------MAKVGLrpehYDR---YPHMFSGGQRQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 146 RVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHN-SALAPMADRLIRFKSGRV----ESET 220
Cdd:PRK11308 162 RIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDlSVVEHIADEVMVMYLGRCvekgTKEQ 241
|
....*
gi 1469306817 221 VQQNP 225
Cdd:PRK11308 242 IFNNP 246
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
19-216 |
2.36e-31 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 115.70 E-value: 2.36e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 19 RIHALDGASFTVERGE-LAIIlGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAqlveYRRADVGFVFQFYN-- 95
Cdd:COG4167 25 QFEAVKPVSFTLEAGQtLAII-GENGSGKSTLAKMLAGIIEPTSGEILINGHKLEYGDYK----YRCKHIRMIFQDPNts 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 96 LVPNL-------------TALENVELAAQIcpdsldaEQTLRQVGLGDRLANF-PAQLSGGEQQRVSIARALAKNPKLLL 161
Cdd:COG4167 100 LNPRLnigqileeplrlnTDLTAEEREERI-------FATLRLVGLLPEHANFyPHMLSSGQKQRVALARALILQPKIII 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 162 CDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAP-MADRLIRFKSGRV 216
Cdd:COG4167 173 ADEALAALDMSVRSQIINLMLELQEKLGISYIYVSQHLGIVKhISDKVLVMHQGEV 228
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
22-216 |
4.27e-31 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 115.11 E-value: 4.27e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 22 ALDGASFTVERGELAIILGASGAGKTTALNILGGM---DTATFGTVTVDGRDVSSANE-AQLVEYRRADVGFVFQFYNLV 97
Cdd:PRK09984 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLitgDKSAGSHIELLGRTVQREGRlARDIRKSRANTGYIFQQFNLV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 98 PNLTALENVELAAQICP-------------DSLDAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDE 164
Cdd:PRK09984 99 NRLSVLENVLIGALGSTpfwrtcfswftreQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADE 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1469306817 165 PTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALA-PMADRLIRFKSGRV 216
Cdd:PRK09984 179 PIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYAlRYCERIVALRQGHV 231
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
1-216 |
4.92e-31 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 116.38 E-value: 4.92e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 1 MAYIEFKDVIKAYGEGDARIHALDGASFTVERGELAIILGASGAGKT-TALNILGGMDTAtfGTVTVD-----GRDVSSA 74
Cdd:PRK11022 1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSvSSLAIMGLIDYP--GRVMAEklefnGQDLQRI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 75 NEAQLVEYRRADVGFVFQ--FYNLVPNLTalenveLAAQICpDSLDAEQ-------------TLRQVGLGD---RLANFP 136
Cdd:PRK11022 79 SEKERRNLVGAEVAMIFQdpMTSLNPCYT------VGFQIM-EAIKVHQggnkktrrqraidLLNQVGIPDpasRLDVYP 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 137 AQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSAL-APMADRLIRFKSGR 215
Cdd:PRK11022 152 HQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALvAEAAHKIIVMYAGQ 231
|
.
gi 1469306817 216 V 216
Cdd:PRK11022 232 V 232
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
4-219 |
1.06e-30 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 114.41 E-value: 1.06e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAY--GEGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSsaNEAQLVE 81
Cdd:PRK13633 5 IKCKNVSYKYesNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTS--DEENLWD 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 82 YRRAdVGFVFQfyNLVPNLTAL---ENVELAAQ---ICPDSLDA--EQTLRQVGLGDRLANFPAQLSGGEQQRVSIARAL 153
Cdd:PRK13633 83 IRNK-AGMVFQ--NPDNQIVATiveEDVAFGPEnlgIPPEEIRErvDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGIL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 154 AKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAPMADRLIRFKSGRVESE 219
Cdd:PRK13633 160 AMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVME 225
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
1-217 |
1.36e-30 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 115.71 E-value: 1.36e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 1 MAYIEFKDVIKAYgegDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVssaNEaqlV 80
Cdd:PRK11650 1 MAGLKLQAVRKSY---DGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVV---NE---L 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 81 EYRRADVGFVFQFYNLVPNLTALENVELA--------AQICPDSLDAEQTLrqvGLGDRLANFPAQLSGGEQQRVSIARA 152
Cdd:PRK11650 72 EPADRDIAMVFQNYALYPHMSVRENMAYGlkirgmpkAEIEERVAEAARIL---ELEPLLDRKPRELSGGQRQRVAMGRA 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 153 LAKNPKLLLCDEPTGALDYKTGKQI---LQLLQdtcRKQGITVIIITHNSALA-PMADRLIRFKSGRVE 217
Cdd:PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMrleIQRLH---RRLKTTSLYVTHDQVEAmTLADRVVVMNGGVAE 214
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
4-232 |
1.56e-30 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 114.02 E-value: 1.56e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDArihALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAqLVEYR 83
Cdd:PRK13639 2 LETRDLKYSYPDGTE---ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKS-LLEVR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RAdVGFVFQ------FYNLVPNLTALENVELAAQICPDSLDAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNP 157
Cdd:PRK13639 78 KT-VGIVFQnpddqlFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKP 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1469306817 158 KLLLCDEPTGALDYKTGKQILQLLQDTcRKQGITVIIITHNSALAPM-ADRLIRFKSGRVESE-TVQQNPVSIETIE 232
Cdd:PRK13639 157 EIIVLDEPTSGLDPMGASQIMKLLYDL-NKEGITIIISTHDVDLVPVyADKVYVMSDGKIIKEgTPKEVFSDIETIR 232
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
26-216 |
1.89e-30 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 116.29 E-value: 1.89e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 26 ASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYRRADVGFVFQFYNLVPNLTALEN 105
Cdd:PRK10070 47 ASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDN 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 106 VELAAQICPDSLDAEQ-----TLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQL 180
Cdd:PRK10070 127 TAFGMELAGINAEERRekaldALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDE 206
|
170 180 190
....*....|....*....|....*....|....*..
gi 1469306817 181 LQDTCRKQGITVIIITHNSALA-PMADRLIRFKSGRV 216
Cdd:PRK10070 207 LVKLQAKHQRTIVFISHDLDEAmRIGDRIAIMQNGEV 243
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
2-198 |
3.36e-30 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 117.08 E-value: 3.36e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 2 AYIEFKDVIKAYgEGDARihALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLve 81
Cdd:TIGR02868 333 PTLELRDLSAGY-PGAPP--VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEV-- 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 82 yrRADVGFVFQFYNLVpNLTALENVELAaqiCPDSLDAEQT--LRQVGLGDRLANFP-----------AQLSGGEQQRVS 148
Cdd:TIGR02868 408 --RRRVSVCAQDAHLF-DTTVRENLRLA---RPDATDEELWaaLERVGLADWLRALPdgldtvlgeggARLSGGERQRLA 481
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1469306817 149 IARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTcrKQGITVIIITHN 198
Cdd:TIGR02868 482 LARALLADAPILLLDEPTEHLDAETADELLEDLLAA--LSGRTVVLITHH 529
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
4-227 |
3.46e-30 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 112.59 E-value: 3.46e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEG-----DARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQ 78
Cdd:TIGR02769 3 LEVRDVTHTYRTGglfgaKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 79 LVEYRRaDVGFVFQ-FYNLV--------------PNLTALENVELAAQIcpdsldaEQTLRQVGLGDRLAN-FPAQLSGG 142
Cdd:TIGR02769 83 RRAFRR-DVQLVFQdSPSAVnprmtvrqiigeplRHLTSLDESEQKARI-------AELLDMVGLRSEDADkLPRQLSGG 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 143 EQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALA-PMADRLIRFKSGRVesetV 221
Cdd:TIGR02769 155 QLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVqSFCQRVAVMDKGQI----V 230
|
....*.
gi 1469306817 222 QQNPVS 227
Cdd:TIGR02769 231 EECDVA 236
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
1-221 |
7.56e-30 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 111.70 E-value: 7.56e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 1 MAYIEFKDVIKAYGEG-----DARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSAN 75
Cdd:PRK10419 1 MTLLNVSGLSHHYAHGglsgkHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 76 EAQLVEYRRaDVGFVFQ--FYNLVP-------------NLTALENVELAAQicpdsldAEQTLRQVGLGDRLAN-FPAQL 139
Cdd:PRK10419 81 RAQRKAFRR-DIQMVFQdsISAVNPrktvreiireplrHLLSLDKAERLAR-------ASEMLRAVDLDDSVLDkRPPQL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 140 SGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAP-MADRLIRFKSGR-VE 217
Cdd:PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVErFCQRVMVMDNGQiVE 232
|
....
gi 1469306817 218 SETV 221
Cdd:PRK10419 233 TQPV 236
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
4-223 |
1.30e-29 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 115.83 E-value: 1.30e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYgegDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLveyR 83
Cdd:PRK13657 335 VEFDDVSFSY---DNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASL---R 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RAdVGFVFQFYNLVpNLTALENVELAaqiCPDSLDAEQTL-------------RQVGLGDRLANFPAQLSGGEQQRVSIA 150
Cdd:PRK13657 409 RN-IAVVFQDAGLF-NRSIEDNIRVG---RPDATDEEMRAaaeraqahdfierKPDGYDTVVGERGRQLSGGERQRLAIA 483
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1469306817 151 RALAKNPKLLLCDEPTGALDYKTGKQILQLLqDTCRKqGITVIIITHNSALAPMADRLIRFKSGR-VESETVQQ 223
Cdd:PRK13657 484 RALLKDPPILILDEATSALDVETEAKVKAAL-DELMK-GRTTFIIAHRLSTVRNADRILVFDNGRvVESGSFDE 555
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
4-216 |
3.00e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 110.69 E-value: 3.00e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDA-RIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEY 82
Cdd:PRK13641 3 IKFENVDYIYSPGTPmEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 83 RRADVGFVFQF--YNLVPNlTALENVELAAQICPDSLD-----AEQTLRQVGLGDRLAN-FPAQLSGGEQQRVSIARALA 154
Cdd:PRK13641 83 LRKKVSLVFQFpeAQLFEN-TVLKDVEFGPKNFGFSEDeakekALKWLKKVGLSEDLISkSPFELSGGQMRRVAIAGVMA 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1469306817 155 KNPKLLLCDEPTGALDYKTGKQILQLLQDTcRKQGITVIIITHN-SALAPMADRLIRFKSGRV 216
Cdd:PRK13641 162 YEPEILCLDEPAAGLDPEGRKEMMQLFKDY-QKAGHTVILVTHNmDDVAEYADDVLVLEHGKL 223
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
4-216 |
4.69e-29 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 108.85 E-value: 4.69e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLveyr 83
Cdd:cd03254 3 IEFENVNFSYDEK---KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSL---- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVPNlTALENVELAAQICPDSlDAEQTLRQVGLGDRLANFP-----------AQLSGGEQQRVSIARA 152
Cdd:cd03254 76 RSMIGVVLQDTFLFSG-TIMENIRLGRPNATDE-EVIEAAKEAGAHDFIMKLPngydtvlgengGNLSQGERQLLAIARA 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1469306817 153 LAKNPKLLLCDEPTGALDYKTGKQILQLLQDTcrKQGITVIIITHNSALAPMADRLIRFKSGRV 216
Cdd:cd03254 154 MLRDPKILILDEATSNIDTETEKLIQEALEKL--MKGRTSIIIAHRLSTIKNADKILVLDDGKI 215
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
20-216 |
5.01e-29 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 108.96 E-value: 5.01e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 20 IHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLveyrrADVGFVF-QFYNLVP 98
Cdd:cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFL-----RRIGVVFgQKTQLWW 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 99 NLTALENVELAAQICpDSLDAEQTLRQVGLGD-----RLANFPA-QLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYK 172
Cdd:cd03267 109 DLPVIDSFYLLAAIY-DLPPARFKKRLDELSElldleELLDTPVrQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVV 187
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1469306817 173 TGKQILQLLQDTCRKQGITVIIITHN-SALAPMADRLIRFKSGRV 216
Cdd:cd03267 188 AQENIRNFLKEYNRERGTTVLLTSHYmKDIEALARRVLVIDKGRL 232
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
4-219 |
7.09e-29 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 107.01 E-value: 7.09e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDAriHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAqlveyR 83
Cdd:cd03247 1 LSINNVSFSYPEQEQ--QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKA-----L 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQfynlVPNLTAlenvelaaqicpdsldaeQTLRQvglgdrlaNFPAQLSGGEQQRVSIARALAKNPKLLLCD 163
Cdd:cd03247 74 SSLISVLNQ----RPYLFD------------------TTLRN--------NLGRRFSGGERQRLALARILLQDAPIVLLD 123
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 164 EPTGALDYKTGKQILQLLQDTCRKQgiTVIIITHNSALAPMADRLIRFKSGRVESE 219
Cdd:cd03247 124 EPTVGLDPITERQLLSLIFEVLKDK--TLIWITHHLTGIEHMDKILFLENGKIIMQ 177
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
5-219 |
1.45e-28 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 107.61 E-value: 1.45e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 5 EFKDVIKAYGEGdariHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVeyrR 84
Cdd:TIGR03410 2 EVSNLNVYYGQS----HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERA---R 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 85 ADVGFVFQFYNLVPNLTALENVELAAQICPDSLdaeqtlRQVgLGDRLANFPA----------QLSGGEQQRVSIARALA 154
Cdd:TIGR03410 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRRS------RKI-PDEIYELFPVlkemlgrrggDLSGGQQQQLAIARALV 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 155 KNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALA-PMADRLIRFKSGRVESE 219
Cdd:TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFArELADRYYVMERGRVVAS 213
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
22-217 |
2.16e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 108.60 E-value: 2.16e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 22 ALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANeAQLVEYRRaDVGFVFQF--YNLVPn 99
Cdd:PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKK-VKLSDIRK-KVGLVFQYpeYQLFE- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 100 ltalENVELAAQICPDSLDAEQ---------TLRQVGLG--DRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGA 168
Cdd:PRK13637 99 ----ETIEKDIAFGPINLGLSEeeienrvkrAMNIVGLDyeDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAG 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1469306817 169 LDYKTGKQILQLLQDTCRKQGITVIIITHN-SALAPMADRLIRFKSGRVE 217
Cdd:PRK13637 175 LDPKGRDEILNKIKELHKEYNMTIILVSHSmEDVAKLADRIIVMNKGKCE 224
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
4-218 |
2.59e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 108.28 E-value: 2.59e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARiHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANeaqlVEYR 83
Cdd:PRK13650 5 IEVKNLTFKYKEDQEK-YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEEN----VWDI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQ-----FYN-LVPNLTA--LENVELAAQICPDSLDaeQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAK 155
Cdd:PRK13650 80 RHKIGMVFQnpdnqFVGaTVEDDVAfgLENKGIPHEEMKERVN--EALELVGMQDFKEREPARLSGGQKQRVAIAGAVAM 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1469306817 156 NPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAPMADRLIRFKSGRVES 218
Cdd:PRK13650 158 RPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVES 220
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
3-216 |
2.88e-28 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 109.42 E-value: 2.88e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 3 YIEFKDVIKAYGegDARIhaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQlvey 82
Cdd:PRK11432 6 FVVLKNITKRFG--SNTV--IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQ---- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 83 rrADVGFVFQFYNLVPNLTALENVE--LAAQICPDSLDAEQ---TLRQV---GLGDRlanFPAQLSGGEQQRVSIARALA 154
Cdd:PRK11432 78 --RDICMVFQSYALFPHMSLGENVGygLKMLGVPKEERKQRvkeALELVdlaGFEDR---YVDQISGGQQQRVALARALI 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1469306817 155 KNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALA-PMADRLIRFKSGRV 216
Cdd:PRK11432 153 LKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAfAVSDTVIVMNKGKI 215
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1-198 |
3.97e-28 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 106.65 E-value: 3.97e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 1 MAYIEFKDVIKAYGegdaRIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSsaneaQLV 80
Cdd:COG1137 1 MMTLEAENLVKSYG----KRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDIT-----HLP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 81 EYRRADVGF--------VFQfynlvpNLTALENVELAAQICPDSLD-----AEQTLRQVGLGdRLANFPA-QLSGGEQQR 146
Cdd:COG1137 72 MHKRARLGIgylpqeasIFR------KLTVEDNILAVLELRKLSKKereerLEELLEEFGIT-HLRKSKAySLSGGERRR 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 147 VSIARALAKNPKLLLCDEPTGALDYKT----GKQILQLlqdtcRKQGITVIIITHN 198
Cdd:COG1137 145 VEIARALATNPKFILLDEPFAGVDPIAvadiQKIIRHL-----KERGIGVLITDHN 195
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
11-216 |
5.31e-28 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 106.84 E-value: 5.31e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 11 KAYGEGdariHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYRR-----A 85
Cdd:TIGR02323 11 KSYGGG----KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERrrlmrT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 86 DVGFVFQFynlvPNLTALENVELAAQICPDSLD------------AEQTLRQVGLG-DRLANFPAQLSGGEQQRVSIARA 152
Cdd:TIGR02323 87 EWGFVHQN----PRDGLRMRVSAGANIGERLMAigarhygniratAQDWLEEVEIDpTRIDDLPRAFSGGMQQRLQIARN 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1469306817 153 LAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAP-MADRLIRFKSGRV 216
Cdd:TIGR02323 163 LVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARlLAQRLLVMQQGRV 227
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
8-198 |
9.00e-28 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 105.32 E-value: 9.00e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 8 DVIKAYGegdaRIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSsaneaQLVEYRRADV 87
Cdd:cd03218 5 NLSKRYG----KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDIT-----KLPMHKRARL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 88 GFVF--QFYNLVPNLTALENVELAAQICPDSLD-----AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLL 160
Cdd:cd03218 76 GIGYlpQEASIFRKLTVEENILAVLEIRGLSKKereekLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFL 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 1469306817 161 LCDEPTGALDYKTGKQILQLLQDTcRKQGITVIIITHN 198
Cdd:cd03218 156 LLDEPFAGVDPIAVQDIQKIIKIL-KDRGIGVLITDHN 192
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
22-225 |
1.40e-27 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 107.10 E-value: 1.40e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 22 ALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEyRRADVGFVFQ--FYNLVPN 99
Cdd:PRK15079 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRA-VRSDIQMIFQdpLASLNPR 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 100 LTALENV---------ELAAQICPDSLDAeqTLRQVGLGDRLAN-FPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGAL 169
Cdd:PRK15079 115 MTIGEIIaeplrtyhpKLSRQEVKDRVKA--MMLKVGLLPNLINrYPHEFSGGQCQRIGIARALILEPKLIICDEPVSAL 192
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1469306817 170 DYKTGKQILQLLQDTCRKQGITVIIITHN-SALAPMADR-LIRFKSGRVE---SETVQQNP 225
Cdd:PRK15079 193 DVSIQAQVVNLLQQLQREMGLSLIFIAHDlAVVKHISDRvLVMYLGHAVElgtYDEVYHNP 253
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
1-223 |
1.50e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 106.04 E-value: 1.50e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 1 MAYIEFKDVIKAYgegDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANeaqLV 80
Cdd:PRK13652 1 MHLIETRDLCYSY---SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKEN---IR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 81 EYRRAdVGFVFQ------FYNLVPNLTALENVELAAQICPDSLDAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALA 154
Cdd:PRK13652 75 EVRKF-VGLVFQnpddqiFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIA 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1469306817 155 KNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAP-MADRLIRFKSGRVESE-TVQQ 223
Cdd:PRK13652 154 MEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPeMADYIYVMDKGRIVAYgTVEE 224
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
1-197 |
1.79e-27 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 105.38 E-value: 1.79e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 1 MAYIEFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGM-----DTATFGTVTVDGRDVSSAN 75
Cdd:PRK14247 1 MNKIEIRDLKVSFGQ----VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLielypEARVSGEVYLDGQDIFKMD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 76 eaqLVEYRRAdVGFVFQFYNLVPNLTALENVELAAQ---ICPDSLDAEQTLRQV--------GLGDRLANFPAQLSGGEQ 144
Cdd:PRK14247 77 ---VIELRRR-VQMVFQIPNPIPNLSIFENVALGLKlnrLVKSKKELQERVRWAlekaqlwdEVKDRLDAPAGKLSGGQQ 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1469306817 145 QRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTcrKQGITVIIITH 197
Cdd:PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL--KKDMTIVLVTH 203
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
4-216 |
1.98e-27 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 104.62 E-value: 1.98e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVikAYGEGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSsanEAQLVEYR 83
Cdd:cd03251 1 VEFKNV--TFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVR---DYTLASLR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RaDVGFVFQ----FYNLVPNLTA-------LENVELAAQIC---------PDSLDAEqtlrqvgLGDRlanfPAQLSGGE 143
Cdd:cd03251 76 R-QIGLVSQdvflFNDTVAENIAygrpgatREEVEEAARAAnahefimelPEGYDTV-------IGER----GVKLSGGQ 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1469306817 144 QQRVSIARALAKNPKLLLCDEPTGALDYKTGKQIlqllQDTCRK--QGITVIIITHNSALAPMADRLIRFKSGRV 216
Cdd:cd03251 144 RQRIAIARALLKDPPILILDEATSALDTESERLV----QAALERlmKNRTTFVIAHRLSTIENADRIVVLEDGKI 214
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1-224 |
3.24e-27 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 108.64 E-value: 3.24e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 1 MAYIEFKDVIKAYGEGDARIHALDGASFTVERGELAIILGASGAGKT-TALNILGGMDTA----TFGTVTVDGRDVSSAN 75
Cdd:PRK15134 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSvTALSILRLLPSPpvvyPSGDIRFHGESLLHAS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 76 EAQLVEYRRADVGFVFQfyNLVPNLTALENVE--------LAAQICPDSLDAE--QTLRQVGL---GDRLANFPAQLSGG 142
Cdd:PRK15134 83 EQTLRGVRGNKIAMIFQ--EPMVSLNPLHTLEkqlyevlsLHRGMRREAARGEilNCLDRVGIrqaAKRLTDYPHQLSGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 143 EQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHN-SALAPMADRLIRFKSGRVesetV 221
Cdd:PRK15134 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNlSIVRKLADRVAVMQNGRC----V 236
|
...
gi 1469306817 222 QQN 224
Cdd:PRK15134 237 EQN 239
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
7-198 |
3.42e-27 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 104.28 E-value: 3.42e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 7 KDVIKAYGegdaRIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEaqlveYRRAD 86
Cdd:TIGR04406 5 ENLIKSYK----KRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPM-----HERAR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 87 VGFVF--QFYNLVPNLTALENVELAAQICPDSLDAEQTLRQVGLGD-----RLANFPAQ-LSGGEQQRVSIARALAKNPK 158
Cdd:TIGR04406 76 LGIGYlpQEASIFRKLTVEENIMAVLEIRKDLDRAEREERLEALLEefqisHLRDNKAMsLSGGERRRVEIARALATNPK 155
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1469306817 159 LLLCDEPTGALD---YKTGKQILQLLqdtcRKQGITVIIITHN 198
Cdd:TIGR04406 156 FILLDEPFAGVDpiaVGDIKKIIKHL----KERGIGVLITDHN 194
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-216 |
3.77e-27 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 104.19 E-value: 3.77e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 1 MAYIEFKDVIKAYGegdaRIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLV 80
Cdd:PRK11614 3 KVMLSFDKVSAHYG----KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIM 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 81 eyrRADVGFVFQFYNLVPNLTALENVELAAQICPDSLDAEQTLRQVGLGDRLANFPAQ----LSGGEQQRVSIARALAKN 156
Cdd:PRK11614 79 ---REAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQragtMSGGEQQMLAIGRALMSQ 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1469306817 157 PKLLLCDEPTGALDYKTGKQILQLLQDTcRKQGITVIIITHNSALA-PMADRLIRFKSGRV 216
Cdd:PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQL-REQGMTIFLVEQNANQAlKLADRGYVLENGHV 215
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
22-216 |
3.91e-27 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 102.51 E-value: 3.91e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 22 ALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAqlvEYRRADVGFV---FQFYNLVP 98
Cdd:cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPR---DAIRAGIAYVpedRKREGLVL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 99 NLTALENVELaaqicpdsldaeqtlrqvglgdrlanfPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQIL 178
Cdd:cd03215 92 DLSVAENIAL---------------------------SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIY 144
|
170 180 190
....*....|....*....|....*....|....*....
gi 1469306817 179 QLLQDtCRKQGITVIII-THNSALAPMADRLIRFKSGRV 216
Cdd:cd03215 145 RLIRE-LADAGKAVLLIsSELDELLGLCDRILVMYEGRI 182
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
4-219 |
4.47e-27 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 108.35 E-value: 4.47e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDT--ATFGTV----------------- 64
Cdd:TIGR03269 1 IEVKNLTKKFDG----KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQyePTSGRIiyhvalcekcgyverps 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 65 -----------TVDGRDVSSANEAQLVEYR-RADVGFVFQ-FYNLVPNLTALENV----ELAAQICPDSLD-AEQTLRQV 126
Cdd:TIGR03269 77 kvgepcpvcggTLEPEEVDFWNLSDKLRRRiRKRIAIMLQrTFALYGDDTVLDNVlealEEIGYEGKEAVGrAVDLIEMV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 127 GLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITH-NSALAPMA 205
Cdd:TIGR03269 157 QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHwPEVIEDLS 236
|
250
....*....|....
gi 1469306817 206 DRLIRFKSGRVESE 219
Cdd:TIGR03269 237 DKAIWLENGEIKEE 250
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
4-220 |
4.90e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 104.86 E-value: 4.90e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIH-ALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEY 82
Cdd:PRK13646 3 IRFDNVSYTYQKGTPYEHqAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 83 RRADVGFVFQFynlvPNLTALE-NVELAAQICPDSL---------DAEQTLRQVGLG-DRLANFPAQLSGGEQQRVSIAR 151
Cdd:PRK13646 83 VRKRIGMVFQF----PESQLFEdTVEREIIFGPKNFkmnldevknYAHRLLMDLGFSrDVMSQSPFQMSGGQMRKIAIVS 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 152 ALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHN-SALAPMADRLIRFKSGRVESET 220
Cdd:PRK13646 159 ILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDmNEVARYADEVIVMKEGSIVSQT 228
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
19-216 |
5.04e-27 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 108.21 E-value: 5.04e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 19 RIHALDGASFTVERGELAIILGASGAGKTTALNIL-----GGMDTAtfGTVTVDGRDVSSaneaqlvEYRRADVGFVFQF 93
Cdd:TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALafrspKGVKGS--GSVLLNGMPIDA-------KEMRAISAYVQQD 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 94 YNLVPNLTALENVELAAQI-CPDSLDA-------EQTLRQVGLGD------RLANFPAQLSGGEQQRVSIARALAKNPKL 159
Cdd:TIGR00955 108 DLFIPTLTVREHLMFQAHLrMPRRVTKkekrervDEVLQALGLRKcantriGVPGRVKGLSGGERKRLAFASELLTDPPL 187
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 160 LLCDEPTGALDYKTGKQILQLLQDTCRKqGITVIIITH--NSALAPMADRLIRFKSGRV 216
Cdd:TIGR00955 188 LFCDEPTSGLDSFMAYSVVQVLKGLAQK-GKTIICTIHqpSSELFELFDKIILMAEGRV 245
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
4-228 |
5.58e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 104.50 E-value: 5.58e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGegDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGM---DTATFGTVTVDGRDVSSANEAQLv 80
Cdd:PRK13640 6 VEFKHVSFTYP--DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLllpDDNPNSKITVDGITLTAKTVWDI- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 81 eyrRADVGFVFQ-----FYN-LVPNLTA--LENVELAAqicPDSLD-AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIAR 151
Cdd:PRK13640 83 ---REKVGIVFQnpdnqFVGaTVGDDVAfgLENRAVPR---PEMIKiVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAG 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1469306817 152 ALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAPMADRLIRFKSGRVeseTVQQNPVSI 228
Cdd:PRK13640 157 ILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKL---LAQGSPVEI 230
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
4-202 |
7.32e-27 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 103.77 E-value: 7.32e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGdariHALDGASFTVERGELAIILGASGAGKTTALNILGGM-----DTATFGTVTVDGRDVSSAnEAQ 78
Cdd:PRK14267 5 IETVNLRVYYGSN----HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLlelneEARVEGEVRLFGRNIYSP-DVD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 79 LVEYRRaDVGFVFQFYNLVPNLTALENVELAAQI-----CPDSLD--AEQTLRQVGL----GDRLANFPAQLSGGEQQRV 147
Cdd:PRK14267 80 PIEVRR-EVGMVFQYPNPFPHLTIYDNVAIGVKLnglvkSKKELDerVEWALKKAALwdevKDRLNDYPSNLSGGQRQRL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1469306817 148 SIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTcrKQGITVIIITHNSALA 202
Cdd:PRK14267 159 VIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL--KKEYTIVLVTHSPAQA 211
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
4-197 |
1.06e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 104.06 E-value: 1.06e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEG---DARihALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLV 80
Cdd:PRK13649 3 INLQNVSYTYQAGtpfEGR--ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 81 EYRRADVGFVFQF-YNLVPNLTALENVELAAQ---ICPDSLD--AEQTLRQVGLGDRLAN-FPAQLSGGEQQRVSIARAL 153
Cdd:PRK13649 81 KQIRKKVGLVFQFpESQLFEETVLKDVAFGPQnfgVSQEEAEalAREKLALVGISESLFEkNPFELSGGQMRRVAIAGIL 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1469306817 154 AKNPKLLLCDEPTGALDYKTGKQILQLLQDTcRKQGITVIIITH 197
Cdd:PRK13649 161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKL-HQSGMTIVLVTH 203
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
23-216 |
1.18e-26 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 103.00 E-value: 1.18e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGGMDTATfGTVTVDGRDVSSANEAQLVEYR-----RADVGF---VFQFY 94
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLLARMAGLLPGQ-GEILLNGRPLSDWSAAELARHRaylsqQQSPPFampVFQYL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 95 NL-VPNLTALENVELA-AQICpdsldaeqtlRQVGLGDRLANFPAQLSGGEQQRVSIARAL-----AKNP--KLLLCDEP 165
Cdd:COG4138 91 ALhQPAGASSEAVEQLlAQLA----------EALGLEDKLSRPLTQLSGGEWQRVRLAAVLlqvwpTINPegQLLLLDEP 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1469306817 166 TGALDYKTGKQILQLLQDTCRkQGITVIIITH--NSALApMADRLIRFKSGRV 216
Cdd:COG4138 161 MNSLDVAQQAALDRLLRELCQ-QGITVVMSSHdlNHTLR-HADRVWLLKQGKL 211
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-197 |
1.41e-26 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 106.55 E-value: 1.41e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 1 MAYI-EFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGM-DTATF-GTVTVDGRDVSSANea 77
Cdd:PRK13549 2 MEYLlEMKNITKTFGG----VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVyPHGTYeGEIIFEGEELQASN-- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 78 qLVEYRRADVGFVFQFYNLVPNLTALENVELAAQICPDS--------LDAEQTLRQVGLGDRLANFPAQLSGGEQQRVSI 149
Cdd:PRK13549 76 -IRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGimdydamyLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEI 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1469306817 150 ARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTcRKQGITVIIITH 197
Cdd:PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDL-KAHGIACIYISH 201
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
23-217 |
2.07e-26 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 106.37 E-value: 2.07e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYrradVGFVFQfynlvpnlta 102
Cdd:COG4618 348 LRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDREELGRH----IGYLPQ---------- 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 103 leNVEL-----AAQIC----PDSLDAEQTLRQVGLGDRLANFP-----------AQLSGGEQQRVSIARALAKNPKLLLC 162
Cdd:COG4618 414 --DVELfdgtiAENIArfgdADPEKVVAAAKLAGVHEMILRLPdgydtrigeggARLSGGQRQRIGLARALYGDPRLVVL 491
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1469306817 163 DEPTGALDYkTGKQILQLLQDTCRKQGITVIIITHNSALAPMADRLIRFKSGRVE 217
Cdd:COG4618 492 DEPNSNLDD-EGEAALAAAIRALKARGATVVVITHRPSLLAAVDKLLVLRDGRVQ 545
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
4-216 |
2.30e-26 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 102.08 E-value: 2.30e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGegDARIhaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVeyR 83
Cdd:COG4604 2 IEIKNVSKRYG--GKVV--LDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELA--K 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RadVGFVFQFYNLVPNLTALENVE----------LAAQicpDSLDAEQTLRQVGLGDrLAN-FPAQLSGGEQQRVSIARA 152
Cdd:COG4604 76 R--LAILRQENHINSRLTVRELVAfgrfpyskgrLTAE---DREIIDEAIAYLDLED-LADrYLDELSGGQRQRAFIAMV 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 153 LAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITH--NSAlAPMADRLIRFKSGRV 216
Cdd:COG4604 150 LAQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHdiNFA-SCYADHIVAMKDGRV 214
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
4-198 |
4.20e-26 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 105.27 E-value: 4.20e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGD-ARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVD-GRDVSSANEAQLVE 81
Cdd:TIGR03269 280 IKVRNVSKRYISVDrGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRvGDEWVDMTKPGPDG 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 82 YRRAD--VGFVFQFYNLVPNLTALENVELAAQI-CPDSL---DAEQTLRQVGLGDR-----LANFPAQLSGGEQQRVSIA 150
Cdd:TIGR03269 360 RGRAKryIGILHQEYDLYPHRTVLDNLTEAIGLeLPDELarmKAVITLKMVGFDEEkaeeiLDKYPDELSEGERHRVALA 439
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1469306817 151 RALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHN 198
Cdd:TIGR03269 440 QVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHD 487
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
20-206 |
9.01e-26 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 102.09 E-value: 9.01e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 20 IHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSsaneAQLVEYRRaDVGFVF-QFYNLVP 98
Cdd:COG4586 35 VEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLGYVPF----KRRKEFAR-RIGVVFgQRSQLWW 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 99 NLTALENVELAAQI--CPDSlDAEQTLRQV----GLGDrLANFPA-QLSGGEQQRVSIARALAKNPKLLLCDEPTGALDY 171
Cdd:COG4586 110 DLPAIDSFRLLKAIyrIPDA-EYKKRLDELvellDLGE-LLDTPVrQLSLGQRMRCELAAALLHRPKILFLDEPTIGLDV 187
|
170 180 190
....*....|....*....|....*....|....*
gi 1469306817 172 KTGKQILQLLQDTCRKQGITVIIITHNsalapMAD 206
Cdd:COG4586 188 VSKEAIREFLKEYNRERGTTILLTSHD-----MDD 217
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
4-217 |
2.09e-25 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 104.03 E-value: 2.09e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAY-GEGDARIhaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEaqlvEY 82
Cdd:TIGR00958 479 IEFQDVSFSYpNRPDVPV--LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDH----HY 552
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 83 RRADVGFVFQFYNLVpNLTALENVELAAQICPDSlDAEQTLRQVGLGDRLANFP-----------AQLSGGEQQRVSIAR 151
Cdd:TIGR00958 553 LHRQVALVGQEPVLF-SGSVRENIAYGLTDTPDE-EIMAAAKAANAHDFIMEFPngydtevgekgSQLSGGQKQRIAIAR 630
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 152 ALAKNPKLLLCDEPTGALDyktgKQILQLLQDTCRKQGITVIIITHNSALAPMADRLIRFKSGRVE 217
Cdd:TIGR00958 631 ALVRKPRVLILDEATSALD----AECEQLLQESRSRASRTVLLIAHRLSTVERADQILVLKKGSVV 692
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
22-201 |
2.12e-25 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 99.68 E-value: 2.12e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 22 ALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVssaneAQLVEYRRADVGFV--FQFYNLVPN 99
Cdd:PRK11300 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHI-----EGLPGHQIARMGVVrtFQHVRLFRE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 100 LTALENVeLAAQ-------------ICP-------DSLD-AEQTLRQVGLGDrLANFPA-QLSGGEQQRVSIARALAKNP 157
Cdd:PRK11300 95 MTVIENL-LVAQhqqlktglfsgllKTPafrraesEALDrAATWLERVGLLE-HANRQAgNLAYGQQRRLEIARCMVTQP 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1469306817 158 KLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSAL 201
Cdd:PRK11300 173 EILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKL 216
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
4-197 |
2.29e-25 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 103.75 E-value: 2.29e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYgEGDARIhaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLveyr 83
Cdd:COG5265 358 VRFENVSFGY-DPERPI--LKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDVTQASL---- 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGfvfqfynLVPNLTALENVELAAQIC---PDSLDAE--QTLRQVGLGDRLANFPAQ-----------LSGGEQQRV 147
Cdd:COG5265 431 RAAIG-------IVPQDTVLFNDTIAYNIAygrPDASEEEveAAARAAQIHDFIESLPDGydtrvgerglkLSGGEKQRV 503
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1469306817 148 SIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTcrKQGITVIIITH 197
Cdd:COG5265 504 AIARTLLKNPPILIFDEATSALDSRTERAIQAALREV--ARGRTTLVIAH 551
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
12-223 |
2.58e-25 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 103.40 E-value: 2.58e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 12 AYGEGDARIHALDGASFTVERGELAIILGASGAGKT-TALNILGGMDTATfGTVTVDG-------RDVSSANE---AQLV 80
Cdd:PRK10261 21 AFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSvTALALMRLLEQAG-GLVQCDKmllrrrsRQVIELSEqsaAQMR 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 81 EYRRADVGFVFQ--FYNLVPNLTA----LENVELAAQICPDS--LDAEQTLRQVGLGDR---LANFPAQLSGGEQQRVSI 149
Cdd:PRK10261 100 HVRGADMAMIFQepMTSLNPVFTVgeqiAESIRLHQGASREEamVEAKRMLDQVRIPEAqtiLSRYPHQLSGGMRQRVMI 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 150 ARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHN-SALAPMADRLIRFKSGR-VESETVQQ 223
Cdd:PRK10261 180 AMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDmGVVAEIADRVLVMYQGEaVETGSVEQ 255
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
4-215 |
2.88e-25 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 101.06 E-value: 2.88e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDArihaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSanEAQLVeyr 83
Cdd:PRK13536 42 IDLAGVSKSYGDKAV----VNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPA--RARLA--- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVPNLTALENVELAAQICPDSL-DAEQTLRQVGLGDRL---ANFP-AQLSGGEQQRVSIARALAKNPK 158
Cdd:PRK13536 113 RARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTrEIEAVIPSLLEFARLeskADARvSDLSGGMKRRLTLARALINDPQ 192
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1469306817 159 LLLCDEPTGALDYKTGKQILQLLQdTCRKQGITVIIITHNSALAP-MADRLIRFKSGR 215
Cdd:PRK13536 193 LLILDEPTTGLDPHARHLIWERLR-SLLARGKTILLTTHFMEEAErLCDRLCVLEAGR 249
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
4-216 |
3.03e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 100.55 E-value: 3.03e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDA-RIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTV------------TVDGRD 70
Cdd:PRK13651 3 IKVKNIVKIFNKKLPtELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIewifkdeknkkkTKEKEK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 71 VSSANEAQLVEYR--------RADVGFVFQF--YNLVPnltalENVELAAQICPDSLD---------AEQTLRQVGLG-D 130
Cdd:PRK13651 83 VLEKLVIQKTRFKkikkikeiRRRVGVVFQFaeYQLFE-----QTIEKDIIFGPVSMGvskeeakkrAAKYIELVGLDeS 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 131 RLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLqDTCRKQGITVIIITHN--SALApMADRL 208
Cdd:PRK13651 158 YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIF-DNLNKQGKTIILVTHDldNVLE-WTKRT 235
|
....*...
gi 1469306817 209 IRFKSGRV 216
Cdd:PRK13651 236 IFFKDGKI 243
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
4-216 |
3.58e-25 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 98.12 E-value: 3.58e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGegdaRIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANeaqlveyr 83
Cdd:cd03269 1 LEVENVTKRFG----RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAA-------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVPNLTALENVELAAQICPDSL-----DAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPK 158
Cdd:cd03269 69 RNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKeearrRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPE 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 159 LLLCDEPTGALDYKTGKQILQLLQDTcRKQGITVIIITHNSALAP-MADRLIRFKSGRV 216
Cdd:cd03269 149 LLILDEPFSGLDPVNVELLKDVIREL-ARAGKTVILSTHQMELVEeLCDRVLLLNKGRA 206
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
21-198 |
6.28e-25 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 102.09 E-value: 6.28e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 21 HALDGASFTVERGELAIILGASGAGK-TTALNILGGMdtATFGTVTVDGRDVSSANEAQLVEYRRaDVGFVFQFYN--LV 97
Cdd:PRK15134 300 VVVKNISFTLRPGETLGLVGESGSGKsTTGLALLRLI--NSQGEIWFDGQPLHNLNRRQLLPVRH-RIQVVFQDPNssLN 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 98 PNLTALENVELAAQICPDSLDAEQ-------TLRQVGLG-DRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGAL 169
Cdd:PRK15134 377 PRLNVLQIIEEGLRVHQPTLSAAQreqqviaVMEEVGLDpETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSL 456
|
170 180
....*....|....*....|....*....
gi 1469306817 170 DYKTGKQILQLLQDTCRKQGITVIIITHN 198
Cdd:PRK15134 457 DKTVQAQILALLKSLQQKHQLAYLFISHD 485
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
22-230 |
6.84e-25 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 98.31 E-value: 6.84e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 22 ALDGASFTVERGELAIILGASGAGKTTALNILGGM-----DTATFGTVTVDGRDVSSANeAQLVEYRRaDVGFVFQFYNL 96
Cdd:PRK14239 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMndlnpEVTITGSIVYNGHNIYSPR-TDTVDLRK-EIGMVFQQPNP 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 97 VPnLTALENVELAAQIC----PDSLDA--EQTLRQVGL----GDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPT 166
Cdd:PRK14239 98 FP-MSIYENVVYGLRLKgikdKQVLDEavEKSLKGASIwdevKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPT 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 167 GALDYKTGKQILQLLQDTcrKQGITVIIITHNSALAP-MADRLIRFKSGRV----ESETVQQNPVSIET 230
Cdd:PRK14239 177 SALDPISAGKIEETLLGL--KDDYTMLLVTRSMQQASrISDRTGFFLDGDLieynDTKQMFMNPKHKET 243
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
8-219 |
7.09e-25 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 97.72 E-value: 7.09e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 8 DVIKAYG--EGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEyrra 85
Cdd:COG2401 29 IVLEAFGveLRVVERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTPVAGCVDVPDNQFGREASLID---- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 86 dvgfvfqfyNLVPNLTALENVELaaqicpdsldaeqtLRQVGLGDRLANF--PAQLSGGEQQRVSIARALAKNPKLLLCD 163
Cdd:COG2401 105 ---------AIGRKGDFKDAVEL--------------LNAVGLSDAVLWLrrFKELSTGQKFRFRLALLLAERPKLLVID 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1469306817 164 EPTGALDYKTGKQILQLLQDTCRKQGITVIIITHN----SALAPmaDRLIRF-KSGRVESE 219
Cdd:COG2401 162 EFCSHLDRQTAKRVARNLQKLARRAGITLVVATHHydviDDLQP--DLLIFVgYGGVPEEK 220
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
24-210 |
8.34e-25 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 96.80 E-value: 8.34e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 24 DGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEaqlvEYRRadvgfvfqfyNLV------ 97
Cdd:PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRD----EYHQ----------DLLylghqp 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 98 ---PNLTALENVELAAQI--CPDSLDAEQTLRQVGLGDRlANFPA-QLSGGEQQRVSIARALAKNPKLLLCDEPTGALDY 171
Cdd:PRK13538 84 gikTELTALENLRFYQRLhgPGDDEALWEALAQVGLAGF-EDVPVrQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDK 162
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1469306817 172 KTGKQILQLLQDTCRKQGItVIIITHNS-ALAPMADRLIR 210
Cdd:PRK13538 163 QGVARLEALLAQHAEQGGM-VILTTHQDlPVASDKVRKLR 201
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
20-197 |
8.50e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 99.54 E-value: 8.50e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 20 IHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTV----------DGRDVSSANEAQLVEYR--RADV 87
Cdd:PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVgdiyigdkknNHELITNPYSKKIKNFKelRRRV 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 88 GFVFQF--YNLVPnltalENVELAAQICPDSL-----DAEQT----LRQVGLGDR-LANFPAQLSGGEQQRVSIARALAK 155
Cdd:PRK13631 119 SMVFQFpeYQLFK-----DTIEKDIMFGPVALgvkksEAKKLakfyLNKMGLDDSyLERSPFGLSGGQKRRVAIAGILAI 193
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1469306817 156 NPKLLLCDEPTGALDYKTGKQILQLLQDTcRKQGITVIIITH 197
Cdd:PRK13631 194 QPEILIFDEPTAGLDPKGEHEMMQLILDA-KANNKTVFVITH 234
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
4-216 |
1.39e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 97.90 E-value: 1.39e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYgEGDARIhALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLveyr 83
Cdd:PRK13648 8 IVFKNVSFQY-QSDASF-TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKL---- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQ-----FY-NLVPNLTA--LENvelaaQICP-DSLDAE--QTLRQVGLGDRLANFPAQLSGGEQQRVSIARA 152
Cdd:PRK13648 82 RKHIGIVFQnpdnqFVgSIVKYDVAfgLEN-----HAVPyDEMHRRvsEALKQVDMLERADYEPNALSGGQKQRVAIAGV 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1469306817 153 LAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAPMADRLIRFKSGRV 216
Cdd:PRK13648 157 LALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTV 220
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
4-216 |
2.32e-24 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 96.39 E-value: 2.32e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIhALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEaqlvEYR 83
Cdd:cd03248 12 VKFQNVTFAYPTRPDTL-VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEH----KYL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQfynlVPNLTA---LENVELAAQICPDS--LDAEQTlrqVGLGDRLANFP-----------AQLSGGEQQRV 147
Cdd:cd03248 87 HSKVSLVGQ----EPVLFArslQDNIAYGLQSCSFEcvKEAAQK---AHAHSFISELAsgydtevgekgSQLSGGQKQRV 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 148 SIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQgiTVIIITHNSALAPMADRLIRFKSGRV 216
Cdd:cd03248 160 AIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERR--TVLVIAHRLSTVERADQILVLDGGRI 226
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
23-219 |
3.14e-24 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 97.09 E-value: 3.14e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFG-----TVTVDGRDVssANEAQLVEYRRAdVGFVFQFYNLV 97
Cdd:PRK14271 37 LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGyrysgDVLLGGRSI--FNYRDVLEFRRR-VGMLFQRPNPF 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 98 PnLTALENVEL---AAQICPDSL---DAEQTLRQVGL----GDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTG 167
Cdd:PRK14271 114 P-MSIMDNVLAgvrAHKLVPRKEfrgVAQARLTEVGLwdavKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTS 192
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1469306817 168 ALDYKTGKQILQLLQDTCRKqgITVIIITHNSALAP-MADRLIRFKSGRVESE 219
Cdd:PRK14271 193 ALDPTTTEKIEEFIRSLADR--LTVIIVTHNLAQAArISDRAALFFDGRLVEE 243
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
4-216 |
4.39e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 97.01 E-value: 4.39e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGD--ARIhALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVE 81
Cdd:PRK13634 3 ITFQKVEHRYQYKTpfERR-ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 82 YRRADVGFVFQFynlvPNLTALENVeLAAQIC--PDSL-----DAEQTLRQ----VGLG-DRLANFPAQLSGGEQQRVSI 149
Cdd:PRK13634 82 PLRKKVGIVFQF----PEHQLFEET-VEKDICfgPMNFgvseeDAKQKAREmielVGLPeELLARSPFELSGGQMRRVAI 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1469306817 150 ARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHN-SALAPMADRLIRFKSGRV 216
Cdd:PRK13634 157 AGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSmEDAARYADQIVVMHKGTV 224
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-215 |
4.76e-24 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 97.18 E-value: 4.76e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 2 AYIEFKDVIKAYGEGDArihaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSAneaqlVE 81
Cdd:PRK13537 6 APIDFRNVEKRYGDKLV----VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSR-----AR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 82 YRRADVGFVFQFYNLVPNLTALENVE-------LAAQICPDSLdaeQTLRQVGLGDRLANFP-AQLSGGEQQRVSIARAL 153
Cdd:PRK13537 77 HARQRVGVVPQFDNLDPDFTVRENLLvfgryfgLSAAAARALV---PPLLEFAKLENKADAKvGELSGGMKRRLTLARAL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1469306817 154 AKNPKLLLCDEPTGALDYKTGKQILQLLQdTCRKQGITVIIITHNSALAP-MADRLIRFKSGR 215
Cdd:PRK13537 154 VNDPDVLVLDEPTTGLDPQARHLMWERLR-SLLARGKTILLTTHFMEEAErLCDRLCVIEEGR 215
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
38-216 |
4.95e-24 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 96.27 E-value: 4.95e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 38 ILGASGAGKTTALNILGGMDTATFGTVTVDGR------DVSSANEAQLveyrRADVGFVFQFYNLVPNLTALENVE--LA 109
Cdd:PRK14246 41 IMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKvlyfgkDIFQIDAIKL----RKEVGMVFQQPNPFPHLSIYDNIAypLK 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 110 AQICPDSLD----AEQTLRQVGLG----DRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLL 181
Cdd:PRK14246 117 SHGIKEKREikkiVEECLRKVGLWkevyDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI 196
|
170 180 190
....*....|....*....|....*....|....*.
gi 1469306817 182 QDTcrKQGITVIIITHN-SALAPMADRLIRFKSGRV 216
Cdd:PRK14246 197 TEL--KNEIAIVIVSHNpQQVARVADYVAFLYNGEL 230
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
13-209 |
5.11e-24 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 95.55 E-value: 5.11e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 13 YGEGDARIhaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEaqlvEYRRADVGFVFQ 92
Cdd:PRK10247 15 YLAGDAKI--LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP----EIYRQQVSYCAQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 93 fynlVPNL---TALENVELAAQI---CPDSLDAEQTLRQVGLGDRLANFP-AQLSGGEQQRVSIARALAKNPKLLLCDEP 165
Cdd:PRK10247 89 ----TPTLfgdTVYDNLIFPWQIrnqQPDPAIFLDDLERFALPDTILTKNiAELSGGEKQRISLIRNLQFMPKVLLLDEI 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1469306817 166 TGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAPMADRLI 209
Cdd:PRK10247 165 TSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVI 208
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
4-216 |
7.02e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 96.46 E-value: 7.02e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAqLVEYR 83
Cdd:PRK13636 6 LKVEELNYNYSDG---THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKG-LMKLR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RAdVGFVFQFY-NLVPNLTALENVELAA---QICPDSLD--AEQTLRQVGLgDRLANFPAQ-LSGGEQQRVSIARALAKN 156
Cdd:PRK13636 82 ES-VGMVFQDPdNQLFSASVYQDVSFGAvnlKLPEDEVRkrVDNALKRTGI-EHLKDKPTHcLSFGQKKRVAIAGVLVME 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1469306817 157 PKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAPM-ADRLIRFKSGRV 216
Cdd:PRK13636 160 PKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLyCDNVFVMKEGRV 220
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
4-215 |
8.31e-24 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 94.46 E-value: 8.31e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIH-ALDGASFTVERGELAIILGASGAGKTTALN-ILGGMdTATFGTVTVDGRdvssaneaqlve 81
Cdd:cd03250 1 ISVEDASFTWDSGEQETSfTLKDINLEVPKGELVAIVGPVGSGKSSLLSaLLGEL-EKLSGSVSVPGS------------ 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 82 yrradVGFVFQFYNLVpNLTALENVELAAQICPDSLdaEQTLRQVGLGDRLANFPAQ-----------LSGGEQQRVSIA 150
Cdd:cd03250 68 -----IAYVSQEPWIQ-NGTIRENILFGKPFDEERY--EKVIKACALEPDLEILPDGdlteigekginLSGGQKQRISLA 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1469306817 151 RALAKNPKLLLCDEPTGALDYKTGKQILQ--LLQDtcRKQGITVIIITHNSALAPMADRLIRFKSGR 215
Cdd:cd03250 140 RAVYSDADIYLLDDPLSAVDAHVGRHIFEncILGL--LLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
1-216 |
9.37e-24 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 97.41 E-value: 9.37e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 1 MAYIEFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVssaNEaqlV 80
Cdd:PRK11000 1 MASVTLRNVTKAYGD----VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRM---ND---V 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 81 EYRRADVGFVFQFYNLVPNLTALENVELAAQIC-PDSLDAEQTLRQVG----LGDRLANFPAQLSGGEQQRVSIARALAK 155
Cdd:PRK11000 71 PPAERGVGMVFQSYALYPHLSVAENMSFGLKLAgAKKEEINQRVNQVAevlqLAHLLDRKPKALSGGQRQRVAIGRTLVA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1469306817 156 NPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALA-PMADRLIRFKSGRV 216
Cdd:PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAmTLADKIVVLDAGRV 212
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
23-199 |
1.09e-23 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 94.17 E-value: 1.09e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEY---RRAdvgfvfqfynLVPN 99
Cdd:PRK13539 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYlghRNA----------MKPA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 100 LTALENVELAAQIC-PDSLDAEQTLRQVGLGDrLANFPAQ-LSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQI 177
Cdd:PRK13539 88 LTVAENLEFWAAFLgGEELDIAAALEAVGLAP-LAHLPFGyLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALF 166
|
170 180
....*....|....*....|..
gi 1469306817 178 LQLLQDTCRKQGItVIIITHNS 199
Cdd:PRK13539 167 AELIRAHLAQGGI-VIAATHIP 187
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
4-217 |
1.43e-23 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 98.21 E-value: 1.43e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGegDARIhaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVdGRDVSSANEAQLVEYr 83
Cdd:COG0488 316 LELEGLSKSYG--DKTL--LDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL-GETVKIGYFDQHQEE- 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 radvgfvfqfynLVPNLTALENVelaAQICPDslDAEQTLRQVgLGDRLanFP--------AQLSGGEQQRVSIARALAK 155
Cdd:COG0488 390 ------------LDPDKTVLDEL---RDGAPG--GTEQEVRGY-LGRFL--FSgddafkpvGVLSGGEKARLALAKLLLS 449
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1469306817 156 NPKLLLCDEPTGALDYKTgKQIL-QLLQDTcrkQGiTVIIITHN-SALAPMADRLIRFKSGRVE 217
Cdd:COG0488 450 PPNVLLLDEPTNHLDIET-LEALeEALDDF---PG-TVLLVSHDrYFLDRVATRILEFEDGGVR 508
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1-216 |
1.54e-23 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 97.22 E-value: 1.54e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 1 MAYIEFKDVIKAYGegDARIhaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLV 80
Cdd:PRK09536 1 MPMIDVSDLSVEFG--DTTV--LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAAS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 81 EY-----RRADVGFVFQFYNLV-----PNLTALENVELAaqicpDSLDAEQTLRQVGLgDRLANFP-AQLSGGEQQRVSI 149
Cdd:PRK09536 77 RRvasvpQDTSLSFEFDVRQVVemgrtPHRSRFDTWTET-----DRAAVERAMERTGV-AQFADRPvTSLSGGERQRVLL 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1469306817 150 ARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCrKQGITVIIITHNSALAP-MADRLIRFKSGRV 216
Cdd:PRK09536 151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRRLV-DDGKTAVAAIHDLDLAArYCDELVLLADGRV 217
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
19-223 |
2.35e-23 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 95.74 E-value: 2.35e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 19 RIHALDGASFTVERGELAIILGASGAGKT-TALNILGGMDTATfgTVTVD-----GRDVSSANEAQlveyRRA----DVG 88
Cdd:COG4170 19 RVKAVDRVSLTLNEGEIRGLVGESGSGKSlIAKAICGITKDNW--HVTADrfrwnGIDLLKLSPRE----RRKiigrEIA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 89 FVFQ--FYNLVPNLTALENVElaaQICPDS--------------LDAEQTLRQVGLGDR---LANFPAQLSGGEQQRVSI 149
Cdd:COG4170 93 MIFQepSSCLDPSAKIGDQLI---EAIPSWtfkgkwwqrfkwrkKRAIELLHRVGIKDHkdiMNSYPHELTEGECQKVMI 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 150 ARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHN-SALAPMADRLIRFKSGR-VESETVQQ 223
Cdd:COG4170 170 AMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDlESISQWADTITVLYCGQtVESGPTEQ 245
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
1-215 |
2.74e-23 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 97.29 E-value: 2.74e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 1 MAYIEFKDVIKAY-GegdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQL 79
Cdd:PRK11288 2 SPYLSFDGIGKTFpG-----VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 80 VEyrrADVGFVFQFYNLVPNLTALENVEL-----AAQICPDSLDAEQTLRQV-GLGDRL-ANFP-AQLSGGEQQRVSIAR 151
Cdd:PRK11288 77 LA---AGVAIIYQELHLVPEMTVAENLYLgqlphKGGIVNRRLLNYEAREQLeHLGVDIdPDTPlKYLSIGQRQMVEIAK 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1469306817 152 ALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTcRKQGITVIIITHN-SALAPMADRLIRFKSGR 215
Cdd:PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIREL-RAEGRVILYVSHRmEEIFALCDAITVFKDGR 217
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
23-212 |
3.53e-23 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 97.19 E-value: 3.53e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDgrdvssaneaqlveyRRADVGFVFQF-YnlVPNLT 101
Cdd:COG4178 379 LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIARP---------------AGARVLFLPQRpY--LPLGT 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 102 alenveLAAQIC-PDSLDA------EQTLRQVGLG---DRL---ANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGA 168
Cdd:COG4178 442 ------LREALLyPATAEAfsdaelREALEAVGLGhlaERLdeeADWDQVLSLGEQQRLAFARLLLHKPDWLFLDEATSA 515
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1469306817 169 LDYKTGKQILQLLQDTCrkQGITVIIITHNSALAPMADRLIRFK 212
Cdd:COG4178 516 LDEENEAALYQLLREEL--PGTTVISVGHRSTLAAFHDRVLELT 557
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
22-211 |
3.94e-23 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 92.30 E-value: 3.94e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 22 ALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRdvssaneaqlveyrrADVGFVFQFYNLVPNL- 100
Cdd:NF040873 7 VLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAGG---------------ARVAYVPQRSEVPDSLp 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 101 -TALENVELA--AQICP-------DSLDAEQTLRQVGLGDrLANFP-AQLSGGEQQRVSIARALAKNPKLLLCDEPTGAL 169
Cdd:NF040873 72 lTVRDLVAMGrwARRGLwrrltrdDRAAVDDALERVGLAD-LAGRQlGELSGGQRQRALLAQGLAQEADLLLLDEPTTGL 150
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1469306817 170 DYKTGKQILQLLQDTCRkQGITVIIITHNSALAPMADRLIRF 211
Cdd:NF040873 151 DAESRERIIALLAEEHA-RGATVVVVTHDLELVRRADPCVLL 191
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
22-197 |
4.58e-23 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 92.42 E-value: 4.58e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 22 ALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSaneaQLVEYRRAdVGFVFQFYNLVPNLT 101
Cdd:TIGR01189 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAE----QRDEPHEN-ILYLGHLPGLKPELS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 102 ALENVELAAQIC-PDSLDAEQTLRQVGLGDrLANFPA-QLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQ 179
Cdd:TIGR01189 90 ALENLHFWAAIHgGAQRTIEDALAAVGLTG-FEDLPAaQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKAGVALLAG 168
|
170
....*....|....*...
gi 1469306817 180 LLQDTCRKQGItVIIITH 197
Cdd:TIGR01189 169 LLRAHLARGGI-VLLTTH 185
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
4-220 |
5.23e-23 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 96.71 E-value: 5.23e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGegDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLveyr 83
Cdd:TIGR02203 331 VEFRNVTFRYP--GRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASL---- 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFYNLVpNLTALENVELAAQICPDSLDAEQTLRQVGLGDRLANFP-----------AQLSGGEQQRVSIARA 152
Cdd:TIGR02203 405 RRQVALVSQDVVLF-NDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPlgldtpigengVLLSGGQRQRLAIARA 483
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 153 LAKNPKLLLCDEPTGALDYKTGKQILQLLQDTcrKQGITVIIITHNSALAPMADRLIRFKSGR-VESET 220
Cdd:TIGR02203 484 LLKDAPILILDEATSALDNESERLVQAALERL--MQGRTTLVIAHRLSTIEKADRIVVMDDGRiVERGT 550
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
38-218 |
5.88e-23 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 94.94 E-value: 5.88e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 38 ILGASGAGKTTALNILGGMDTATFGTVTVDGRD-VSSANEAQL-VEYRRadVGFVFQFYNLVPNLTALENVELAaqiCPD 115
Cdd:PRK11144 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVlFDAEKGICLpPEKRR--IGYVFQDARLFPHYKVRGNLRYG---MAK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 116 SLDAE--QTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVI 193
Cdd:PRK11144 104 SMVAQfdKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPIL 183
|
170 180
....*....|....*....|....*.
gi 1469306817 194 IITHN-SALAPMADRLIRFKSGRVES 218
Cdd:PRK11144 184 YVSHSlDEILRLADRVVVLEQGKVKA 209
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
4-219 |
1.28e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 92.85 E-value: 1.28e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYgEGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLveyr 83
Cdd:PRK13642 5 LEVENLVFKY-EKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNL---- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQFY-NLVPNLTALENVELAAQ---ICPDSL--DAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNP 157
Cdd:PRK13642 80 RRKIGMVFQNPdNQFVGATVEDDVAFGMEnqgIPREEMikRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1469306817 158 KLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAPMADRLIRFKSGRVESE 219
Cdd:PRK13642 160 EIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKE 221
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
3-214 |
2.12e-22 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 94.85 E-value: 2.12e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 3 YIEFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEY 82
Cdd:PRK09700 5 YISMAGIGKSFGP----VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 83 rraDVGFVFQFYNLVPNLTALENV----ELAAQICP-DSLD-------AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIA 150
Cdd:PRK09700 81 ---GIGIIYQELSVIDELTVLENLyigrHLTKKVCGvNIIDwremrvrAAMMLLRVGLKVDLDEKVANLSISHKQMLEIA 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1469306817 151 RALAKNPKLLLCDEPTGALdykTGKQI--LQLLQDTCRKQGITVIIITHNSA-LAPMADRLIRFKSG 214
Cdd:PRK09700 158 KTLMLDAKVIIMDEPTSSL---TNKEVdyLFLIMNQLRKEGTAIVYISHKLAeIRRICDRYTVMKDG 221
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
4-216 |
5.24e-22 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 89.86 E-value: 5.24e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDAriHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLveyr 83
Cdd:cd03244 3 IEFKNVSLRYRPNLP--PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDL---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQ----F-----YNLVPNltalenvelaaQICPDSlDAEQTLRQVGLGDRLANFP-----------AQLSGGE 143
Cdd:cd03244 77 RSRISIIPQdpvlFsgtirSNLDPF-----------GEYSDE-ELWQALERVGLKEFVESLPggldtvveeggENLSVGQ 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1469306817 144 QQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRkqGITVIIITHNsaLAPMA--DRLIRFKSGRV 216
Cdd:cd03244 145 RQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHR--LDTIIdsDRILVLDKGRV 215
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-215 |
5.46e-22 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 92.09 E-value: 5.46e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 1 MAYIEFKDVIKAYGEGDARIHALDGASFTVERGELAIILGASGAGKT-TALNILG--GMDTATFGTVTVDGRDVSSANEA 77
Cdd:PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSqTAFALMGllAANGRIGGSATFNGREILNLPEK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 78 QLVEYRRADVGFVFQ--FYNLVPNLTALENVELAAQICPDSLDAEQTLRQVGLGD---------RLANFPAQLSGGEQQR 146
Cdd:PRK09473 90 ELNKLRAEQISMIFQdpMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDavkmpearkRMKMYPHEFSGGMRQR 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 147 VSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHN-SALAPMADRLIRFKSGR 215
Cdd:PRK09473 170 VMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDlGVVAGICDKVLVMYAGR 239
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
4-216 |
6.02e-22 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 90.53 E-value: 6.02e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAY------------------GEGDARIHALDGASFTVERGE-LAIIlGASGAGKTTALNILGGMDTATFGTV 64
Cdd:COG1134 5 IEVENVSKSYrlyhepsrslkelllrrrRTRREEFWALKDVSFEVERGEsVGII-GRNGAGKSTLLKLIAGILEPTSGRV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 65 TVDGRdVSSaneaqLVEyrradVGFVFQfynlvPNLTALENVELAAQICpdSLDAEQTLRQV-------GLGDRLaNFPA 137
Cdd:COG1134 84 EVNGR-VSA-----LLE-----LGAGFH-----PELTGRENIYLNGRLL--GLSRKEIDEKFdeivefaELGDFI-DQPV 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 138 Q-LSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTcRKQGITVIIITHN-SALAPMADRLIRFKSGR 215
Cdd:COG1134 145 KtYSSGMRARLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIREL-RESGRTVIFVSHSmGAVRRLCDRAIWLEKGR 223
|
.
gi 1469306817 216 V 216
Cdd:COG1134 224 L 224
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
24-226 |
7.12e-22 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 90.53 E-value: 7.12e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 24 DGASFTVERGELAIILGASGAGKT----TALNILGGMDTATFGTVTVDGRDVSSAneaqlvEYRRADVGFVFQ----FYN 95
Cdd:PRK10418 20 HGVSLTLQRGRVLALVGGSGSGKSltcaAALGILPAGVRQTAGRVLLDGKPVAPC------ALRGRKIATIMQnprsAFN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 96 LVPNLTALENVELAAQICPDSLDA-EQTLRQVGLGDR---LANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDY 171
Cdd:PRK10418 94 PLHTMHTHARETCLALGKPADDATlTAALEAVGLENAarvLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDV 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 172 KTGKQILQLLQDTCRKQGITVIIITHN-SALAPMADRLIRFKSGRVesetVQQNPV 226
Cdd:PRK10418 174 VAQARILDLLESIVQKRALGMLLVTHDmGVVARLADDVAVMSHGRI----VEQGDV 225
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
20-201 |
1.07e-21 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 93.00 E-value: 1.07e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 20 IHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYRRaDVGFVFQ--FYNLV 97
Cdd:PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRR-DIQFIFQdpYASLD 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 98 PNLTALENVELAAQIcPDSLDAEQT-------LRQVGLGDRLA-NFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGAL 169
Cdd:PRK10261 416 PRQTVGDSIMEPLRV-HGLLPGKAAaarvawlLERVGLLPEHAwRYPHEFSGGQRQRICIARALALNPKVIIADEAVSAL 494
|
170 180 190
....*....|....*....|....*....|..
gi 1469306817 170 DYKTGKQILQLLQDTCRKQGITVIIITHNSAL 201
Cdd:PRK10261 495 DVSIRGQIINLLLDLQRDFGIAYLFISHDMAV 526
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
23-197 |
1.10e-21 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 92.82 E-value: 1.10e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDgrdvssaneaqlveyRRADVGFVFQFYNLVPNLTA 102
Cdd:COG0488 14 LDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIP---------------KGLRIGYLPQEPPLDDDLTV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 103 LENV--------------------------------ELAAQIcpDSLD-------AEQTLRQVGLGDRLANFP-AQLSGG 142
Cdd:COG0488 79 LDTVldgdaelraleaeleeleaklaepdedlerlaELQEEF--EALGgweaearAEEILSGLGFPEEDLDRPvSELSGG 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1469306817 143 EQQRVSIARALAKNPKLLLCDEPTGALDYKTgkqiLQLLQDTCRKQGITVIIITH 197
Cdd:COG0488 157 WRRRVALARALLSEPDLLLLDEPTNHLDLES----IEWLEEFLKNYPGTVLVVSH 207
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
20-197 |
1.49e-21 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 92.16 E-value: 1.49e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 20 IHALDGASFTVERGELAIILGASGAGKTTALNILGGM-DTATF-GTVTVDGrdvssaneaQLVEYR--RA--DVGFVF-- 91
Cdd:NF040905 14 VKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVyPHGSYeGEILFDG---------EVCRFKdiRDseALGIVIih 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 92 QFYNLVPNLTALENVELAAQICPDSL--------DAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCD 163
Cdd:NF040905 85 QELALIPYLSIAENIFLGNERAKRGVidwnetnrRARELLAKVGLDESPDTLVTDIGVGKQQLVEIAKALSKDVKLLILD 164
|
170 180 190
....*....|....*....|....*....|....
gi 1469306817 164 EPTGALDYKTGKQILQLLQDTcRKQGITVIIITH 197
Cdd:NF040905 165 EPTAALNEEDSAALLDLLLEL-KAQGITSIIISH 197
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
4-216 |
1.67e-21 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 90.17 E-value: 1.67e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANeaqlveyr 83
Cdd:COG4152 2 LELKGLTKRFGD----KTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPED-------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGfvfqfY-----NLVPNLTALENVE-------LAAQICPDSLDAeqTLRQVGLGDRlANFPAQ-LSGGEQQRVSIA 150
Cdd:COG4152 70 RRRIG-----YlpeerGLYPKMKVGEQLVylarlkgLSKAEAKRRADE--WLERLGLGDR-ANKKVEeLSKGNQQKVQLI 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1469306817 151 RALAKNPKLLLCDEPTGALD------YKTGkqILQLlqdtcRKQGITVIIITHNSALAP-MADRLIRFKSGRV 216
Cdd:COG4152 142 AALLHDPELLILDEPFSGLDpvnvelLKDV--IREL-----AAKGTTVIFSSHQMELVEeLCDRIVIINKGRK 207
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
22-216 |
1.95e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 90.07 E-value: 1.95e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 22 ALDGASFTVERGELAIILGASGAGKTTALNILGGM-DTATFGTVTVDGRDVSSANEAQLVEYRRADVGFVFQF--YNLVP 98
Cdd:PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLiISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFpeYQLFQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 99 N----------LTALENVELAAQICPDSLDAEQTLRqvglgDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGA 168
Cdd:PRK13645 106 EtiekdiafgpVNLGENKQEAYKKVPELLKLVQLPE-----DYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGG 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1469306817 169 LDYKTGKQILQLLQDTCRKQGITVIIITHN-SALAPMADRLIRFKSGRV 216
Cdd:PRK13645 181 LDPKGEEDFINLFERLNKEYKKRIIMVTHNmDQVLRIADEVIVMHEGKV 229
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
22-218 |
2.03e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 89.79 E-value: 2.03e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 22 ALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYRRADVGFVFQF-YNLVPNL 100
Cdd:PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFpESQLFEE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 101 TALENVELAAQ---ICPDSLD--AEQTLRQVGLGDRL-ANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTG 174
Cdd:PRK13643 101 TVLKDVAFGPQnfgIPKEKAEkiAAEKLEMVGLADEFwEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKAR 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1469306817 175 KQILQLLQdTCRKQGITVIIITH-NSALAPMADRLIRFKSGRVES 218
Cdd:PRK13643 181 IEMMQLFE-SIHQSGQTVVLVTHlMDDVADYADYVYLLEKGHIIS 224
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
27-197 |
2.46e-21 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 88.84 E-value: 2.46e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 27 SFTVERGELAIILGASGAGKTTALNILGGMDTATfGTVTVDGRDVSSANEAQLVEYR-----RADVGF---VFQFYNL-V 97
Cdd:PRK03695 16 SAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGS-GSIQFAGQPLEAWSAAELARHRaylsqQQTPPFampVFQYLTLhQ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 98 PNLTALENVELA-AQICpdsldaeqtlRQVGLGDRLANFPAQLSGGEQQRVSIARAL-----AKNP--KLLLCDEPTGAL 169
Cdd:PRK03695 95 PDKTRTEAVASAlNEVA----------EALGLDDKLGRSVNQLSGGEWQRVRLAAVVlqvwpDINPagQLLLLDEPMNSL 164
|
170 180
....*....|....*....|....*...
gi 1469306817 170 DYKTGKQILQLLQDTCRkQGITVIIITH 197
Cdd:PRK03695 165 DVAQQAALDRLLSELCQ-QGIAVVMSSH 191
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
17-197 |
3.01e-21 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 91.83 E-value: 3.01e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 17 DARIHALDGA------SFTVERGELAIILGASGAGKTTALNILGGmdtatF----GTVTVDGRDVSSANEAQlveYRRAd 86
Cdd:PRK11174 354 DLEILSPDGKtlagplNFTLPAGQRIALVGPSGAGKTSLLNALLG-----FlpyqGSLKINGIELRELDPES---WRKH- 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 87 VGFVFQfyNlvPNL---TALENVELAAqicPDSLDAE--QTLRQVGLGDRLANFP-----------AQLSGGEQQRVSIA 150
Cdd:PRK11174 425 LSWVGQ--N--PQLphgTLRDNVLLGN---PDASDEQlqQALENAWVSEFLPLLPqgldtpigdqaAGLSVGQAQRLALA 497
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1469306817 151 RALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQgiTVIIITH 197
Cdd:PRK11174 498 RALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQ--TTLMVTH 542
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
23-213 |
3.40e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 88.94 E-value: 3.40e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGGMDTATfGTVTVDGRdVSSANEAqLVEYR------RADVGFVFQFYNL 96
Cdd:PRK14258 23 LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELE-SEVRVEGR-VEFFNQN-IYERRvnlnrlRRQVSMVHPKPNL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 97 VPnLTALENVELAAQIC---PD-SLD--AEQTLRQVGLGDRLAN----FPAQLSGGEQQRVSIARALAKNPKLLLCDEPT 166
Cdd:PRK14258 100 FP-MSVYDNVAYGVKIVgwrPKlEIDdiVESALKDADLWDEIKHkihkSALDLSGGQQQRLCIARALAVKPKVLLMDEPC 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1469306817 167 GALDYKTGKQILQLLQDTCRKQGITVIIITHNsalAPMADRLIRFKS 213
Cdd:PRK14258 179 FGLDPIASMKVESLIQSLRLRSELTMVIVSHN---LHQVSRLSDFTA 222
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
19-216 |
5.72e-21 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 88.31 E-value: 5.72e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 19 RIHALDGASFTV-ERGELAIIlGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAqlveYRRADVGFVFQfynlv 97
Cdd:PRK15112 25 TVEAVKPLSFTLrEGQTLAII-GENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS----YRSQRIRMIFQ----- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 98 PNLTALENVELAAQIC--PDSLDAE-----------QTLRQVGL-GDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCD 163
Cdd:PRK15112 95 DPSTSLNPRQRISQILdfPLRLNTDlepeqrekqiiETLRQVGLlPDHASYYPHMLAPGQKQRLGLARALILRPKVIIAD 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1469306817 164 EPTGALDYKTGKQILQLLQDTCRKQGITVIIIT-HNSALAPMADRLIRFKSGRV 216
Cdd:PRK15112 175 EALASLDMSMRSQLINLMLELQEKQGISYIYVTqHLGMMKHISDQVLVMHQGEV 228
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
21-216 |
5.78e-21 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 90.46 E-value: 5.78e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 21 HALDGASFTVERGElaiILGASG---AGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQ-------LV-EYRRADvGf 89
Cdd:COG1129 266 GVVRDVSFSVRAGE---ILGIAGlvgAGRTELARALFGADPADSGEIRLDGKPVRIRSPRDairagiaYVpEDRKGE-G- 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 90 vfqfynLVPNLTALENVELAAQicpDSL-------------DAEQTLRQVGLgdRLANfPAQ----LSGGEQQRVSIARA 152
Cdd:COG1129 341 ------LVLDLSIRENITLASL---DRLsrgglldrrreraLAEEYIKRLRI--KTPS-PEQpvgnLSGGNQQKVVLAKW 408
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1469306817 153 LAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRkQGITVIIIThnSALaP----MADRLIRFKSGRV 216
Cdd:COG1129 409 LATDPKVLILDEPTRGIDVGAKAEIYRLIRELAA-EGKAVIVIS--SEL-PellgLSDRILVMREGRI 472
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
4-211 |
7.06e-21 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 85.67 E-value: 7.06e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIHALdgaSFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVdgrdvssaneaqlveYR 83
Cdd:cd03223 1 IELENLSLATPDGRVLLKDL---SFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM---------------PE 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQfynlVPNLTALenvelaaqicpdsldaeqTLRQVglgdrLAnFP--AQLSGGEQQRVSIARALAKNPKLLL 161
Cdd:cd03223 63 GEDLLFLPQ----RPYLPLG------------------TLREQ-----LI-YPwdDVLSGGEQQRLAFARLLLHKPKFVF 114
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1469306817 162 CDEPTGALDYKTGKQILQLLQDtcrkQGITVIIITHNSALAPMADRLIRF 211
Cdd:cd03223 115 LDEATSALDEESEDRLYQLLKE----LGITVISVGHRPSLWKFHDRVLDL 160
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
4-197 |
9.86e-21 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 89.88 E-value: 9.86e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGM-DTATF-GTVTVDGRDVSSANeaqLVE 81
Cdd:TIGR02633 2 LEMKGIVKTFGG----VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVyPHGTWdGEIYWSGSPLKASN---IRD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 82 YRRADVGFVFQFYNLVPNLTALENVELAAQICPDS---------LDAEQTLRQVGLGDRLANFP-AQLSGGEQQRVSIAR 151
Cdd:TIGR02633 75 TERAGIVIIHQELTLVPELSVAENIFLGNEITLPGgrmaynamyLRAKNLLRELQLDADNVTRPvGDYGGGQQQLVEIAK 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1469306817 152 ALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKqGITVIIITH 197
Cdd:TIGR02633 155 ALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH-GVACVYISH 199
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
1-198 |
3.85e-20 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 85.72 E-value: 3.85e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 1 MAYIEFKDVIKAYGEGdariHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSAneaQLV 80
Cdd:PRK10895 1 MATLTAKNLAKAYKGR----RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLL---PLH 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 81 EYRRADVGFVFQFYNLVPNLTALENVELAAQICPDSLDAEQTLRQVGLGDRLA------NFPAQLSGGEQQRVSIARALA 154
Cdd:PRK10895 74 ARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHiehlrdSMGQSLSGGERRRVEIARALA 153
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1469306817 155 KNPKLLLCDEPTGALDYKTG---KQILQLLQDTcrkqGITVIIITHN 198
Cdd:PRK10895 154 ANPKFILLDEPFAGVDPISVidiKRIIEHLRDS----GLGVLITDHN 196
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
4-227 |
3.88e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 86.19 E-value: 3.88e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDArihALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVeyr 83
Cdd:PRK13644 2 IRLENVSYSYPDGTP---ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGI--- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQfyNLVPNLTAlENVELAAQICPDSL---------DAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALA 154
Cdd:PRK13644 76 RKLVGIVFQ--NPETQFVG-RTVEEDLAFGPENLclppieirkRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILT 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1469306817 155 KNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKqGITVIIITHNSALAPMADRLIRFKSGRVESETVQQNPVS 227
Cdd:PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEK-GKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
22-198 |
5.60e-20 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 85.60 E-value: 5.60e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 22 ALDGASFTVERGELAIILGASGAGKTTALNILGGMD--TATF---GTVTVDGRDVSsANEAQLVEYRRAdVGFVFQFYNL 96
Cdd:PRK14243 25 AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNdlIPGFrveGKVTFHGKNLY-APDVDPVEVRRR-IGMVFQKPNP 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 97 VPNlTALENVELAAQI--CPDSLD--AEQTLRQVGL----GDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGA 168
Cdd:PRK14243 103 FPK-SIYDNIAYGARIngYKGDMDelVERSLRQAALwdevKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSA 181
|
170 180 190
....*....|....*....|....*....|
gi 1469306817 169 LDYKTGKQILQLLQDTcrKQGITVIIITHN 198
Cdd:PRK14243 182 LDPISTLRIEELMHEL--KEQYTIIIVTHN 209
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
22-216 |
5.99e-20 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 88.15 E-value: 5.99e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 22 ALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQlveyrRADVGFVFQFYNLVPNLT 101
Cdd:TIGR01257 945 AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAV-----RQSLGMCPQHNILFHHLT 1019
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 102 ALENVELAAQICPDS-----LDAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQ 176
Cdd:TIGR01257 1020 VAEHILFYAQLKGRSweeaqLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRS 1099
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1469306817 177 ILQLLQDTcrKQGITVIIITHNSALAP-MADRLIRFKSGRV 216
Cdd:TIGR01257 1100 IWDLLLKY--RSGRTIIMSTHHMDEADlLGDRIAIISQGRL 1138
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
10-217 |
8.46e-20 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 84.12 E-value: 8.46e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 10 IKAYGEGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSsaneaqLVEyrrADVGF 89
Cdd:cd03220 25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSS------LLG---LGGGF 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 90 vfqfynlVPNLTALENVELAAQI---CPDSLDA--EQTLRQVGLGDRLaNFP-AQLSGGEQQRVSIARALAKNPKLLLCD 163
Cdd:cd03220 96 -------NPELTGRENIYLNGRLlglSRKEIDEkiDEIIEFSELGDFI-DLPvKTYSSGMKARLAFAIATALEPDILLID 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1469306817 164 EPTGALDYKTGKQILQLLQDTcRKQGITVIIITHN-SALAPMADRLIRFKSGRVE 217
Cdd:cd03220 168 EVLAVGDAAFQEKCQRRLREL-LKQGKTVILVSHDpSSIKRLCDRALVLEKGKIR 221
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
4-201 |
1.06e-19 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 81.73 E-value: 1.06e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDArihaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDgrdvssaneaqlveyR 83
Cdd:cd03221 1 IELENLSKTYGGKLL----LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG---------------S 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVfqfynlvpnltalenvelaaqicpdsldaeqtlrqvglgdrlanfpAQLSGGEQQRVSIARALAKNPKLLLCD 163
Cdd:cd03221 62 TVKIGYF----------------------------------------------EQLSGGEKMRLALAKLLLENPNLLLLD 95
|
170 180 190
....*....|....*....|....*....|....*...
gi 1469306817 164 EPTGALDYKTgkqiLQLLQDTCRKQGITVIIITHNSAL 201
Cdd:cd03221 96 EPTNHLDLES----IEALEEALKEYPGTVILVSHDRYF 129
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
4-198 |
5.20e-19 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 82.89 E-value: 5.20e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVikAYGEGDARIhaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYR 83
Cdd:PRK11831 8 VDMRGV--SFTRGNRCI--FDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RAdVGFVFQFYNLVPNLTALENV--------ELAAQICPDSLdaEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAK 155
Cdd:PRK11831 84 KR-MSMLFQSGALFTDMNVFDNVayplrehtQLPAPLLHSTV--MMKLEAVGLRGAAKLMPSELSGGMARRAALARAIAL 160
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1469306817 156 NPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHN 198
Cdd:PRK11831 161 EPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHD 203
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
23-210 |
1.05e-18 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 81.00 E-value: 1.05e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSaneaQLVEYRRAdVGFVFQFYNLVPNLTA 102
Cdd:cd03231 16 FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDF----QRDSIARG-LLYLGHAPGIKTTLSV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 103 LENVELAAQICPDSlDAEQTLRQVGLG---DRLAnfpAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQ 179
Cdd:cd03231 91 LENLRFWHADHSDE-QVEEALARVGLNgfeDRPV---AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAE 166
|
170 180 190
....*....|....*....|....*....|..
gi 1469306817 180 LLQDTCRKQGItVIIITHNS-ALAPMADRLIR 210
Cdd:cd03231 167 AMAGHCARGGM-VVLTTHQDlGLSEAGARELD 197
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
23-219 |
1.51e-18 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 83.51 E-value: 1.51e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGElaiILGASG---AGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQ--------LVEYRRADvgfvf 91
Cdd:PRK10762 268 VNDVSFTLRKGE---ILGVSGlmgAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDglangivyISEDRKRD----- 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 92 qfyNLVPNLTALENVELAA----QICPDSLDAEQTLRQVGLGDRLANF--PAQ------LSGGEQQRVSIARALAKNPKL 159
Cdd:PRK10762 340 ---GLVLGMSVKENMSLTAlryfSRAGGSLKHADEQQAVSDFIRLFNIktPSMeqaiglLSGGNQQKVAIARGLMTRPKV 416
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1469306817 160 LLCDEPTGALDYKTGKQILQLLqDTCRKQGITVIIIthnSALAP----MADRLIRFKSGRVESE 219
Cdd:PRK10762 417 LILDEPTRGVDVGAKKEIYQLI-NQFKAEGLSIILV---SSEMPevlgMSDRILVMHEGRISGE 476
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
22-197 |
1.77e-18 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 83.64 E-value: 1.77e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 22 ALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVssanEAQLVEYRRaDVGFVFQFYNLVPNLT 101
Cdd:NF033858 281 AVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPV----DAGDIATRR-RVGYMSQAFSLYGELT 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 102 ALENVELAA---QICPDSLDA--EQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQ 176
Cdd:NF033858 356 VRQNLELHArlfHLPAAEIAArvAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVARDM 435
|
170 180
....*....|....*....|.
gi 1469306817 177 ILQLLQDTCRKQGITVIIITH 197
Cdd:NF033858 436 FWRLLIELSREDGVTIFISTH 456
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
1-195 |
4.87e-18 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 78.84 E-value: 4.87e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 1 MAYIEFKDVIKAYGEGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGmDTATF----GTVTVDGRDVssane 76
Cdd:cd03233 1 ASTLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALAN-RTEGNvsveGDIHYNGIPY----- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 77 AQLVEYRRADVGFVFQFYNLVPNLTALENVELAAQICPDsldaeQTLRQVglgdrlanfpaqlSGGEQQRVSIARALAKN 156
Cdd:cd03233 75 KEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKGN-----EFVRGI-------------SGGERKRVSIAEALVSR 136
|
170 180 190
....*....|....*....|....*....|....*....
gi 1469306817 157 PKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIII 195
Cdd:cd03233 137 ASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVS 175
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
23-214 |
4.97e-18 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 78.82 E-value: 4.97e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGGMDTA--TFGTVTVDGRdvssaneaQLVEYRRADVGFVFQFYNLVPNL 100
Cdd:cd03232 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAgvITGEILINGR--------PLDKNFQRSTGYVEQQDVHSPNL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 101 TALENVELAAqicpdsldaeqTLRQVGLGDRlanfpaqlsggeqQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQL 180
Cdd:cd03232 95 TVREALRFSA-----------LLRGLSVEQR-------------KRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRF 150
|
170 180 190
....*....|....*....|....*....|....*.
gi 1469306817 181 LQDTCRkQGITVIIITH--NSALAPMADRLIRFKSG 214
Cdd:cd03232 151 LKKLAD-SGQAILCTIHqpSASIFEKFDRLLLLKRG 185
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
7-214 |
1.51e-17 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 78.14 E-value: 1.51e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 7 KDVIKAYGEGDARIHALDGASFTVERGELAIILGASGAGKTTAL-NILGGMDTATfGTVTVDGRDVSSANEAQLVEYRRA 85
Cdd:cd03290 1 VQVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLlAILGEMQTLE-GKVHWSNKNESEPSFEATRSRNRY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 86 DVGFVFQFYNLVpNLTALENVEL--------------AAQICPDsLDAEQTLRQVGLGDRLANfpaqLSGGEQQRVSIAR 151
Cdd:cd03290 80 SVAYAAQKPWLL-NATVEENITFgspfnkqrykavtdACSLQPD-IDLLPFGDQTEIGERGIN----LSGGQRQRICVAR 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1469306817 152 ALAKNPKLLLCDEPTGALDYKTGKQ-----ILQLLQDTCRkqgiTVIIITHNSALAPMADRLIRFKSG 214
Cdd:cd03290 154 ALYQNTNIVFLDDPFSALDIHLSDHlmqegILKFLQDDKR----TLVLVTHKLQYLPHADWIIAMKDG 217
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
16-231 |
2.05e-17 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 80.46 E-value: 2.05e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 16 GDARIHALDGASFTVERGElaiILG-A--SGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLveyRRADVGFV-- 90
Cdd:COG3845 267 DDRGVPALKDVSLEVRAGE---ILGiAgvAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRER---RRLGVAYIpe 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 91 -FQFYNLVPNLTALENVELAAQICPD-----SLD----AEQTLRQV--------GLGDRLANfpaqLSGGEQQRVSIARA 152
Cdd:COG3845 341 dRLGRGLVPDMSVAENLILGRYRRPPfsrggFLDrkaiRAFAEELIeefdvrtpGPDTPARS----LSGGNQQKVILARE 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 153 LAKNPKLLLCDEPTGALDYKTGKQILQLLQDTcRKQGITVIIIthnSA-----LApMADRLIRFKSGRVeSETVQQNPVS 227
Cdd:COG3845 417 LSRDPKLLIAAQPTRGLDVGAIEFIHQRLLEL-RDAGAAVLLI---SEdldeiLA-LSDRIAVMYEGRI-VGEVPAAEAT 490
|
....
gi 1469306817 228 IETI 231
Cdd:COG3845 491 REEI 494
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
4-227 |
2.67e-17 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 80.02 E-value: 2.67e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIHALDgasFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANeaqLVEYR 83
Cdd:PRK10522 323 LELRNVTFAYQDNGFSVGPIN---LTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQ---PEDYR 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RAdVGFVFQFYNLVPNLTALENVElaaqicPDSLDAEQTLRQVGLGD-------RLANFpaQLSGGEQQRVSIARALAKN 156
Cdd:PRK10522 397 KL-FSAVFTDFHLFDQLLGPEGKP------ANPALVEKWLERLKMAHkleledgRISNL--KLSKGQKKRLALLLALAEE 467
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1469306817 157 PKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAPMADRLIRFKSGRV------ESETVQQNPVS 227
Cdd:PRK10522 468 RDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLseltgeERDAASRDAVA 544
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
14-216 |
5.51e-17 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 77.36 E-value: 5.51e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 14 GEGDARIhaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYrradVGFVFQF 93
Cdd:PRK11231 11 GYGTKRI--LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARR----LALLPQH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 94 YnLVP-NLTALENVE------------LAAQicpDSLDAEQTLRQVGLgDRLANFP-AQLSGGEQQRVSIARALAKNPKL 159
Cdd:PRK11231 85 H-LTPeGITVRELVAygrspwlslwgrLSAE---DNARVNQAMEQTRI-NHLADRRlTDLSGGQRQRAFLAMVLAQDTPV 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 160 LLCDEPTGALDYKTGKQILQLLQDTcRKQGITVIIITH--NSAlAPMADRLIRFKSGRV 216
Cdd:PRK11231 160 VLLDEPTTYLDINHQVELMRLMREL-NTQGKTVVTVLHdlNQA-SRYCDHLVVLANGHV 216
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
19-224 |
6.26e-17 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 78.82 E-value: 6.26e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 19 RIHALDGASFTVERGELAIILGASGAGKT-TALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYRRADVGFVFQFYNLV 97
Cdd:PRK13549 274 HIKRVDDVSFSLRRGEILGIAGLVGAGRTeLVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIV 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 98 PNLTALENVELAA--QIC-PDSLDAEQTLRQVGLG-DRL---ANFP----AQLSGGEQQRVSIARALAKNPKLLLCDEPT 166
Cdd:PRK13549 354 PVMGVGKNITLAAldRFTgGSRIDDAAELKTILESiQRLkvkTASPelaiARLSGGNQQKAVLAKCLLLNPKILILDEPT 433
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1469306817 167 GALD----YKTGKQILQLLQdtcrkQGITVIIIThnSALAP---MADRLIRFKSGRVESETVQQN 224
Cdd:PRK13549 434 RGIDvgakYEIYKLINQLVQ-----QGVAIIVIS--SELPEvlgLSDRVLVMHEGKLKGDLINHN 491
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
10-224 |
7.77e-17 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 78.71 E-value: 7.77e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 10 IKAYGEGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATF-GTVTVDGRDVSSANEAQLVEYRRADVG 88
Cdd:TIGR02633 263 LTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFeGNVFINGKPVDIRNPAQAIRAGIAMVP 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 89 FVFQFYNLVPNLTALENVELAA--QICPDS-LDAEQTLRQVGLG-DRL---ANFP----AQLSGGEQQRVSIARALAKNP 157
Cdd:TIGR02633 343 EDRKRHGIVPILGVGKNITLSVlkSFCFKMrIDAAAELQIIGSAiQRLkvkTASPflpiGRLSGGNQQKAVLAKMLLTNP 422
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 158 KLLLCDEPTGALDYKTGKQILQLLQDTCRkQGITVIIIThnSALAP---MADRLIRFKSGRVESETVQQN 224
Cdd:TIGR02633 423 RVLILDEPTRGVDVGAKYEIYKLINQLAQ-EGVAIIVVS--SELAEvlgLSDRVLVIGEGKLKGDFVNHA 489
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
27-216 |
8.26e-17 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 77.14 E-value: 8.26e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 27 SFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEyrraDVGFVFQFYNLVPNLTALENV 106
Cdd:PRK10575 31 SLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR----KVAYLPQQLPAAEGMTVRELV 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 107 E---------LAAQICPDSLDAEQTLRQVGL---GDRLANfpaQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTG 174
Cdd:PRK10575 107 AigrypwhgaLGRFGAADREKVEEAISLVGLkplAHRLVD---SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQ 183
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1469306817 175 KQILQLLQDTCRKQGITVIIITHNSALAP-MADRLIRFKSGRV 216
Cdd:PRK10575 184 VDVLALVHRLSQERGLTVIAVLHDINMAArYCDYLVALRGGEM 226
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
23-215 |
1.14e-16 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 78.38 E-value: 1.14e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGG-MDTATF-GTVTVDGRDVSSaneaQLVeyRRadVGFVFQFYNLVPNL 100
Cdd:PLN03211 84 LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGrIQGNNFtGTILANNRKPTK----QIL--KR--TGFVTQDDILYPHL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 101 TALENVELAAQI-CPDSLD-------AEQTLRQVGLGdRLAN------FPAQLSGGEQQRVSIARALAKNPKLLLCDEPT 166
Cdd:PLN03211 156 TVRETLVFCSLLrLPKSLTkqekilvAESVISELGLT-KCENtiignsFIRGISGGERKRVSIAHEMLINPSLLILDEPT 234
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1469306817 167 GALDYKTGKQILQLLQDTCRKqGITVIIITH--NSALAPMADRLIRFKSGR 215
Cdd:PLN03211 235 SGLDATAAYRLVLTLGSLAQK-GKTIVTSMHqpSSRVYQMFDSVLVLSEGR 284
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
4-197 |
1.58e-16 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 77.78 E-value: 1.58e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEA---QLV 80
Cdd:PRK15439 12 LCARSISKQYSG----VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAkahQLG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 81 EYrradvgFVFQFYNLVPNLTALENVELAAQICPDSLD-AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKL 159
Cdd:PRK15439 88 IY------LVPQEPLLFPNLSVKENILFGLPKRQASMQkMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRI 161
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1469306817 160 LLCDEPTGALD-YKTG---KQILQLLQdtcrkQGITVIIITH 197
Cdd:PRK15439 162 LILDEPTASLTpAETErlfSRIRELLA-----QGVGIVFISH 198
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
4-216 |
2.52e-16 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 77.37 E-value: 2.52e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARihALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDvssaneaqLVEYR 83
Cdd:PRK11176 342 IEFRNVTFTYPGKEVP--ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHD--------LRDYT 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 ----RADVGFVFQ----FYNLVPNLTAL--------ENVELAAQICpDSLDAEQTLRQvGLGDRLANFPAQLSGGEQQRV 147
Cdd:PRK11176 412 laslRNQVALVSQnvhlFNDTIANNIAYarteqysrEQIEEAARMA-YAMDFINKMDN-GLDTVIGENGVLLSGGQRQRI 489
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 148 SIARALAKNPKLLLCDEPTGALDYKTGKQIlQLLQDTCRKQGiTVIIITHNSALAPMADRLIRFKSGRV 216
Cdd:PRK11176 490 AIARALLRDSPILILDEATSALDTESERAI-QAALDELQKNR-TSLVIAHRLSTIEKADEILVVEDGEI 556
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
22-198 |
3.40e-16 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 75.30 E-value: 3.40e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 22 ALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYRRADVGFVFQFYNLVPNLT 101
Cdd:PRK15056 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVV 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 102 ALENVE----LAAQICPDSLDAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQI 177
Cdd:PRK15056 102 MMGRYGhmgwLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARI 181
|
170 180
....*....|....*....|.
gi 1469306817 178 LQLLQDTcRKQGITVIIITHN 198
Cdd:PRK15056 182 ISLLREL-RDEGKTMLVSTHN 201
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
16-198 |
7.07e-16 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 73.33 E-value: 7.07e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 16 GDARIhaLDGASFTVERGELAIILGASGAGKTTALNILGGMD--TATFGTVTVDGRDVSSANeaqlVEYR-RADVGFVFQ 92
Cdd:cd03217 11 GGKEI--LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPkyEVTEGEILFKGEDITDLP----PEERaRLGIFLAFQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 93 FYNLVPNLTaleNVELaaqicpdsldaeqtLRQVGLGdrlanfpaqLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYK 172
Cdd:cd03217 85 YPPEIPGVK---NADF--------------LRYVNEG---------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDID 138
|
170 180
....*....|....*....|....*.
gi 1469306817 173 TGKQILQLLQdTCRKQGITVIIITHN 198
Cdd:cd03217 139 ALRLVAEVIN-KLREEGKSVLIITHY 163
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
22-197 |
7.91e-16 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 75.81 E-value: 7.91e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 22 ALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEyrrADVGFVFQFYNLVPNLT 101
Cdd:PRK10762 19 ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE---AGIGIIHQELNLIPQLT 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 102 ALENVELAAQICP--DSLD-------AEQTLRQVGL---GDRLAnfpAQLSGGEQQRVSIARALAKNPKLLLCDEPTGAL 169
Cdd:PRK10762 96 IAENIFLGREFVNrfGRIDwkkmyaeADKLLARLNLrfsSDKLV---GELSIGEQQMVEIAKVLSFESKVIIMDEPTDAL 172
|
170 180 190
....*....|....*....|....*....|..
gi 1469306817 170 -DYKTG---KQILQLlqdtcRKQGITVIIITH 197
Cdd:PRK10762 173 tDTETEslfRVIREL-----KSQGRGIVYISH 199
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
4-216 |
1.05e-15 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 72.83 E-value: 1.05e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIhaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANeaqLVEYR 83
Cdd:cd03369 7 IEVENLSVRYAPDLPPV--LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIP---LEDLR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RAdVGFVFQfynlVPNL---TALENVelaaqicpDSLDaEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLL 160
Cdd:cd03369 82 SS-LTIIPQ----DPTLfsgTIRSNL--------DPFD-EYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVL 147
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 161 LCDEPTGALDYKTGkqilQLLQDTCRK--QGITVIIITHN-SALAPMaDRLIRFKSGRV 216
Cdd:cd03369 148 VLDEATASIDYATD----ALIQKTIREefTNSTILTIAHRlRTIIDY-DKILVMDAGEV 201
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
23-216 |
2.55e-15 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 72.94 E-value: 2.55e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGGMDTATF--------GTVTVDGRDVSSANEAQLVEYR-----RADVGF 89
Cdd:PRK13547 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGaprgarvtGDVTLNGEPLAAIDAPRLARLRavlpqAAQPAF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 90 VFQFYNLVpNLTALENVELAAQICPDSLD-AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAK---------NPKL 159
Cdd:PRK13547 97 AFSAREIV-LLGRYPHARRAGALTHRDGEiAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQlwpphdaaqPPRY 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1469306817 160 LLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAPM-ADRLIRFKSGRV 216
Cdd:PRK13547 176 LLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARhADRIAMLADGAI 233
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
4-197 |
3.63e-15 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 73.82 E-value: 3.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEgdaRIhALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVdGRDVssaneaqlveyr 83
Cdd:TIGR03719 323 IEAENLTKAFGD---KL-LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI-GETV------------ 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 raDVGFVFQFY-NLVPNLTALENVElaaqicpDSLDaeqtlrQVGLGDRLANFPA-----------------QLSGGEQQ 145
Cdd:TIGR03719 386 --KLAYVDQSRdALDPNKTVWEEIS-------GGLD------IIKLGKREIPSRAyvgrfnfkgsdqqkkvgQLSGGERN 450
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1469306817 146 RVSIARALAKNPKLLLCDEPTGALDYKTgkqiLQLLQDTCRKQGITVIIITH 197
Cdd:TIGR03719 451 RVHLAKTLKSGGNVLLLDEPTNDLDVET----LRALEEALLNFAGCAVVISH 498
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
23-216 |
3.94e-15 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 72.02 E-value: 3.94e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGGMD--TATFGTVTVDGRDVSSANeaqlVEYR-RADVGFVFQ------- 92
Cdd:COG0396 16 LKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGHPkyEVTSGSILLDGEDILELS----PDERaRAGIFLAFQypveipg 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 93 --FYNLVpnLTALENVELAAQICPDSLD-AEQTLRQVGLGDRLANFP--AQLSGGEQQRVSIARALAKNPKLLLCDEPTG 167
Cdd:COG0396 92 vsVSNFL--RTALNARRGEELSAREFLKlLKEKMKELGLDEDFLDRYvnEGFSGGEKKRNEILQMLLLEPKLAILDETDS 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1469306817 168 ALDyktgkqI--LQLLQDTC---RKQGITVIIITHNSAL----APmaDRLIRFKSGRV 216
Cdd:COG0396 170 GLD------IdaLRIVAEGVnklRSPDRGILIITHYQRIldyiKP--DFVHVLVDGRI 219
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
4-223 |
5.70e-15 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 73.29 E-value: 5.70e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAY-GEGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANeaqLVEY 82
Cdd:COG4615 328 LELRGVTYRYpGEDGDEGFTLGPIDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVTADN---REAY 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 83 RRAdvgF--VFQFYNLVPNLTALENVELAAQicpdsldAEQTLRQVGL-------GDRLANfpAQLSGGEQQRVSIARAL 153
Cdd:COG4615 405 RQL---FsaVFSDFHLFDRLLGLDGEADPAR-------ARELLERLELdhkvsveDGRFST--TDLSQGQRKRLALLVAL 472
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 154 AKNPKLLLCDEptGALD---------YktgKQILQLLqdtcRKQGITVIIITHNSALAPMADRLIRFKSGRVESETVQQ 223
Cdd:COG4615 473 LEDRPILVFDE--WAADqdpefrrvfY---TELLPEL----KARGKTVIAISHDDRYFDLADRVLKMDYGKLVELTGPA 542
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
28-212 |
1.50e-14 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 69.88 E-value: 1.50e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 28 FTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYrradvgfVFQFYNLVPNLTALENVE 107
Cdd:PRK13543 32 FHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY-------LGHLPGLKADLSTLENLH 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 108 LA-------AQICPDSldaeqTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQL 180
Cdd:PRK13543 105 FLcglhgrrAKQMPGS-----ALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRM 179
|
170 180 190
....*....|....*....|....*....|..
gi 1469306817 181 LQDTCRKQGITVIIITHNSALAPMADRLIRFK 212
Cdd:PRK13543 180 ISAHLRGGGAALVTTHGAYAAPPVRTRMLTLE 211
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
16-224 |
2.10e-14 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 68.50 E-value: 2.10e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 16 GDARIHALDGASFTVERGELAIILGASGAGKTTALNilggmdtATFGTvtvdgrdvssANEAQLVEyrradvgfvfqfyn 95
Cdd:cd03238 4 SGANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVN-------EGLYA----------SGKARLIS-------------- 52
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 96 lvpnltALENVELAAQICPDSLdaeQTLRQVGLGDRLANFPAQ-LSGGEQQRVSIARALAKNPK--LLLCDEPTGALDYK 172
Cdd:cd03238 53 ------FLPKFSRNKLIFIDQL---QFLIDVGLGYLTLGQKLStLSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQ 123
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1469306817 173 TGKQILQLLqDTCRKQGITVIIITHNSALAPMADRLIRF--KSGRVESETVQQN 224
Cdd:cd03238 124 DINQLLEVI-KGLIDLGNTVILIEHNLDVLSSADWIIDFgpGSGKSGGKVVFSG 176
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
27-232 |
2.13e-14 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 70.40 E-value: 2.13e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 27 SFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVeyRRadVGFVFQFYNLVPNLTALENV 106
Cdd:PRK10253 27 TVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVA--RR--IGLLAQNATTPGDITVQELV 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 107 E--------LAAQICPDSLDA-EQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQI 177
Cdd:PRK10253 103 ArgryphqpLFTRWRKEDEEAvTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDL 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 178 LQLLQDTCRKQGITVIIITHNSALA-PMADRLIRFKSGRVESETVQQNPVSIETIE 232
Cdd:PRK10253 183 LELLSELNREKGYTLAAVLHDLNQAcRYASHLIALREGKIVAQGAPKEIVTAELIE 238
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
14-231 |
3.60e-14 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 70.85 E-value: 3.60e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 14 GEGDARIhaldgaSFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQlveyrRADVGFVF-- 91
Cdd:PRK15439 276 GEGFRNI------SLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQ-----RLARGLVYlp 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 92 ---QFYNL---VP---NLTALENVELAAQICP--DSLDAEQTLRQVGLGDRLANFPAQ-LSGGEQQRVSIARALAKNPKL 159
Cdd:PRK15439 345 edrQSSGLyldAPlawNVCALTHNRRGFWIKParENAVLERYRRALNIKFNHAEQAARtLSGGNQQKVLIAKCLEASPQL 424
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1469306817 160 LLCDEPTGALDYKTGKQILQLLQDTCrKQGITVIIITHN-SALAPMADRLIRFKSGRVESETVQQNpVSIETI 231
Cdd:PRK15439 425 LIVDEPTRGVDVSARNDIYQLIRSIA-AQNVAVLFISSDlEEIEQMADRVLVMHQGEISGALTGAA-INVDTI 495
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
27-231 |
5.90e-14 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 70.20 E-value: 5.90e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 27 SFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANE--------AQLVEYRRaDVGFVfqfynlvP 98
Cdd:PRK09700 283 SFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPldavkkgmAYITESRR-DNGFF-------P 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 99 NLTALENVELAAQICPDSL----------------DAEQTLRQVGLGDRLANFpAQLSGGEQQRVSIARALAKNPKLLLC 162
Cdd:PRK09700 355 NFSIAQNMAISRSLKDGGYkgamglfhevdeqrtaENQRELLALKCHSVNQNI-TELSGGNQQKVLISKWLCCCPEVIIF 433
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 163 DEPTGALDYKTGKQILQLLQDTCrKQGITVIIITHN-SALAPMADRLIRFKSGRVESETVQQNPVSIETI 231
Cdd:PRK09700 434 DEPTRGIDVGAKAEIYKVMRQLA-DDGKVILMVSSElPEIITVCDRIAVFCEGRLTQILTNRDDMSEEEI 502
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
4-230 |
6.33e-14 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 70.78 E-value: 6.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIhaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANeaqLVEYR 83
Cdd:PLN03232 1235 IKFEDVHLRYRPGLPPV--LHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFG---LTDLR 1309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RAdvgfvfqfYNLVPNLTALENVELAAQICPDS----LDAEQTLRQVGLGDRLANFPAQL-----------SGGEQQRVS 148
Cdd:PLN03232 1310 RV--------LSIIPQSPVLFSGTVRFNIDPFSehndADLWEALERAHIKDVIDRNPFGLdaevseggenfSVGQRQLLS 1381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 149 IARALAKNPKLLLCDEPTGALDYKTGkqilQLLQDTCRKQ--GITVIIITHNSALAPMADRLIRFKSGRVESETVQQNPV 226
Cdd:PLN03232 1382 LARALLRRSKILVLDEATASVDVRTD----SLIQRTIREEfkSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELL 1457
|
....
gi 1469306817 227 SIET 230
Cdd:PLN03232 1458 SRDT 1461
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
119-208 |
9.47e-14 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 69.06 E-value: 9.47e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 119 AEQTLRQVGLGDR---LANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIII 195
Cdd:PRK15093 136 AIELLHRVGIKDHkdaMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLI 215
|
90
....*....|....
gi 1469306817 196 THN-SALAPMADRL 208
Cdd:PRK15093 216 SHDlQMLSQWADKI 229
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
23-197 |
9.58e-14 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 67.28 E-value: 9.58e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVssanEAQLVEYRRaDVGFVFQFYNLVPNLTA 102
Cdd:PRK13540 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI----KKDLCTYQK-QLCFVGHRSGINPYLTL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 103 LENVELAAQICPDSLDAEQTLRQVGLGdRLANFP-AQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLL 181
Cdd:PRK13540 92 RENCLYDIHFSPGAVGITELCRLFSLE-HLIDYPcGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKI 170
|
170
....*....|....*.
gi 1469306817 182 QDTcRKQGITVIIITH 197
Cdd:PRK13540 171 QEH-RAKGGAVLLTSH 185
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
11-219 |
1.34e-13 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 69.17 E-value: 1.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 11 KAYGEGDARIHALDG------ASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLV---- 80
Cdd:PRK11288 251 RPLGEVRLRLDGLKGpglrepISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIragi 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 81 ----EYRRADvgfvfqfyNLVPNLTALENVELAAQ--------ICPDSLDAEQTLRQVGL-------GDRLANFpaqLSG 141
Cdd:PRK11288 331 mlcpEDRKAE--------GIIPVHSVADNINISARrhhlragcLINNRWEAENADRFIRSlniktpsREQLIMN---LSG 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 142 GEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCrKQGITVIIIThnSALAP---MADRLIRFKSGRVES 218
Cdd:PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELA-AQGVAVLFVS--SDLPEvlgVADRIVVMREGRIAG 476
|
.
gi 1469306817 219 E 219
Cdd:PRK11288 477 E 477
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
23-218 |
1.60e-13 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 69.21 E-value: 1.60e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGG---MDtatfgtvtvDGRDVSsanEAQLVEYR------RADVGFVFQF 93
Cdd:PRK11147 19 LDNAELHIEDNERVCLVGRNGAGKSTLMKILNGevlLD---------DGRIIY---EQDLIVARlqqdppRNVEGTVYDF 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 94 --------------YNLVPNLTALENVE-----LA-AQICPDSLDA-------EQTLRQVGLGdrlANFP-AQLSGGEQQ 145
Cdd:PRK11147 87 vaegieeqaeylkrYHDISHLVETDPSEknlneLAkLQEQLDHHNLwqlenriNEVLAQLGLD---PDAAlSSLSGGWLR 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1469306817 146 RVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTcrkQGiTVIIITHN-SALAPMADRLIRFKSGRVES 218
Cdd:PRK11147 164 KAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QG-SIIFISHDrSFIRNMATRIVDLDRGKLVS 233
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
38-197 |
2.73e-13 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 68.42 E-value: 2.73e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 38 ILGASGAGKTTALNILGGMDTATFGtvtvdgrdvssanEAQLVEYRRadVGFVFQFYNLVPNLTALENVELAAQICPDSL 117
Cdd:TIGR03719 36 VLGLNGAGKSTLLRIMAGVDKDFNG-------------EARPQPGIK--VGYLPQEPQLDPTKTVRENVEEGVAEIKDAL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 118 D--------------------AEQT-----LRQVGLGD------------RLANFPAQ---LSGGEQQRVSIARALAKNP 157
Cdd:TIGR03719 101 DrfneisakyaepdadfdklaAEQAelqeiIDAADAWDldsqleiamdalRCPPWDADvtkLSGGERRRVALCRLLLSKP 180
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1469306817 158 KLLLCDEPTGALDYKTGKQILQLLQDTcrkQGiTVIIITH 197
Cdd:TIGR03719 181 DMLLLDEPTNHLDAESVAWLERHLQEY---PG-TVVAVTH 216
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
15-219 |
3.06e-13 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 68.61 E-value: 3.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 15 EGDARIHALDGASFTVERGELAIILGASGAGKTTALN-ILGGMDTATFGTVTVDGRdvssaneaqlVEYRrADVGFVFqf 93
Cdd:PLN03130 625 DSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISaMLGELPPRSDASVVIRGT----------VAYV-PQVSWIF-- 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 94 ynlvpNLTALENVELAAQICPDSLdaEQTLRQVGLGDRLANFPA-----------QLSGGEQQRVSIARALAKNPKLLLC 162
Cdd:PLN03130 692 -----NATVRDNILFGSPFDPERY--ERAIDVTALQHDLDLLPGgdlteigergvNISGGQKQRVSMARAVYSNSDVYIF 764
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 163 DEPTGALDYKTGKQILqllqDTCRK---QGITVIIITHNSALAPMADRLIRFKSGRVESE 219
Cdd:PLN03130 765 DDPLSALDAHVGRQVF----DKCIKdelRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEE 820
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
23-216 |
3.39e-13 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 68.43 E-value: 3.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALN-ILGGMDTATfGTVTVDGrdvssaneaqlveyrraDVGFVFQfYNLVPNLT 101
Cdd:TIGR00957 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSaLLAEMDKVE-GHVHMKG-----------------SVAYVPQ-QAWIQNDS 714
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 102 ALENVELAAQICPDSLdaEQTLRQVGL---------GDR--LANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALD 170
Cdd:TIGR00957 715 LRENILFGKALNEKYY--QQVLEACALlpdleilpsGDRteIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 792
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1469306817 171 YKTGKQILQ-LLQDTCRKQGITVIIITHNSALAPMADRLIRFKSGRV 216
Cdd:TIGR00957 793 AHVGKHIFEhVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKI 839
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
23-214 |
3.50e-13 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 68.21 E-value: 3.50e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGGMDTA---TFGTVTVDGRDVSSANEaqlveyRRadVGFVFQFYNLVPN 99
Cdd:TIGR00956 779 LNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTgviTGGDRLVNGRPLDSSFQ------RS--IGYVQQQDLHLPT 850
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 100 LTALENVELAAQI-CPDSLDAEQTLRQV----------GLGDRLANFPAQ-LSGGEQQRVSIARALAKNPKLLL-CDEPT 166
Cdd:TIGR00956 851 STVRESLRFSAYLrQPKSVSKSEKMEYVeevikllemeSYADAVVGVPGEgLNVEQRKRLTIGVELVAKPKLLLfLDEPT 930
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1469306817 167 GALDYKTGKQILQLLQDTCrKQGITVIIITHNSALAPMA--DRLIRFKSG 214
Cdd:TIGR00956 931 SGLDSQTAWSICKLMRKLA-DHGQAILCTIHQPSAILFEefDRLLLLQKG 979
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
27-224 |
5.41e-13 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 67.45 E-value: 5.41e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 27 SFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDV--SSANEA-----QLV-EYRRA-------DVGFvf 91
Cdd:PRK10982 268 SFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKInnHNANEAinhgfALVtEERRStgiyaylDIGF-- 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 92 qfYNLVPNLTA-------LENVELAA--QICPDSLDAEQTLRQVGLGdrlanfpaQLSGGEQQRVSIARALAKNPKLLLC 162
Cdd:PRK10982 346 --NSLISNIRNyknkvglLDNSRMKSdtQWVIDSMRVKTPGHRTQIG--------SLSGGNQQKVIIGRWLLTQPEILML 415
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1469306817 163 DEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAPMADRLIRFKSGR----VESETVQQN 224
Cdd:PRK10982 416 DEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLvagiVDTKTTTQN 481
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
3-212 |
5.42e-13 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 67.50 E-value: 5.42e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 3 YIEFKDVIKAYGEgdariHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDgrdVSSANEAQlveY 82
Cdd:COG1245 341 LVEYPDLTKSYGG-----FSLEVEGGEIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEVDED---LKISYKPQ---Y 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 83 RRADV-GFVFQFynlvpnltaLENVelAAQICPDSLDAEQTLRQVGLgDRLANFP-AQLSGGEQQRVSIARALAKNPKLL 160
Cdd:COG1245 410 ISPDYdGTVEEF---------LRSA--NTDDFGSSYYKTEIIKPLGL-EKLLDKNvKDLSGGELQRVAIAACLSRDADLY 477
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1469306817 161 LCDEPTGALD----YKTGKQIlqllQDTCRKQGITVIIITHNSALAPM-ADRLIRFK 212
Cdd:COG1245 478 LLDEPSAHLDveqrLAVAKAI----RRFAENRGKTAMVVDHDIYLIDYiSDRLMVFE 530
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
22-198 |
6.36e-13 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 67.73 E-value: 6.36e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 22 ALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSAneaqlVEYRRADVGFVFQFYNLVPNLT 101
Cdd:TIGR01257 1954 AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTN-----ISDVHQNMGYCPQFDAIDDLLT 2028
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 102 ALENVELAAQIcpDSLDAEQ-------TLRQVGL---GDRLAnfpAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDY 171
Cdd:TIGR01257 2029 GREHLYLYARL--RGVPAEEiekvanwSIQSLGLslyADRLA---GTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDP 2103
|
170 180
....*....|....*....|....*..
gi 1469306817 172 KTGKQILQLLQDTCRkQGITVIIITHN 198
Cdd:TIGR01257 2104 QARRMLWNTIVSIIR-EGRAVVLTSHS 2129
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
10-216 |
8.39e-13 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 67.04 E-value: 8.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 10 IKAYGEGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSsanEAQLVEYRR--ADV 87
Cdd:PRK10789 318 IRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLT---KLQLDSWRSrlAVV 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 88 GFV-FQFYNLVPNLTAL-------ENVELAAQIC---PDSLDAEQTLrQVGLGDRlanfPAQLSGGEQQRVSIARALAKN 156
Cdd:PRK10789 395 SQTpFLFSDTVANNIALgrpdatqQEIEHVARLAsvhDDILRLPQGY-DTEVGER----GVMLSGGQKQRISIARALLLN 469
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1469306817 157 PKLLLCDEPTGALDYKTGKQILQLLQDTcrKQGITVIIITHN-SALAPmADRLIRFKSGRV 216
Cdd:PRK10789 470 AEILILDDALSAVDGRTEHQILHNLRQW--GEGRTVIISAHRlSALTE-ASEILVMQHGHI 527
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
4-223 |
8.40e-13 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 67.05 E-value: 8.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIHALdgaSFTV-ERGELAIIlGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLvey 82
Cdd:PRK10790 341 IDIDNVSFAYRDDNLVLQNI---NLSVpSRGFVALV-GHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVL--- 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 83 rRADVGFVFQ--------FYNlvpNLT------------ALENVELA--AQICPDsldaeqtlrqvGLGDRLANFPAQLS 140
Cdd:PRK10790 414 -RQGVAMVQQdpvvladtFLA---NVTlgrdiseeqvwqALETVQLAelARSLPD-----------GLYTPLGEQGNNLS 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 141 GGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQdTCRKQgITVIIITHNSALAPMADRLIRFKSGR-VESE 219
Cdd:PRK10790 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALA-AVREH-TTLVVIAHRLSTIVEADTILVLHRGQaVEQG 556
|
....
gi 1469306817 220 TVQQ 223
Cdd:PRK10790 557 THQQ 560
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
4-216 |
1.00e-12 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 67.07 E-value: 1.00e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIhaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLveyr 83
Cdd:PLN03130 1238 IKFEDVVLRYRPELPPV--LHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDL---- 1311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RADVGFVFQ----F-----YNLVP-------NL-TALENVELAAQICPDS--LDAEQTlrQVGlgdrlANFpaqlSGGEQ 144
Cdd:PLN03130 1312 RKVLGIIPQapvlFsgtvrFNLDPfnehndaDLwESLERAHLKDVIRRNSlgLDAEVS--EAG-----ENF----SVGQR 1380
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1469306817 145 QRVSIARALAKNPKLLLCDEPTGALDYKTGKqilqLLQDTCRKQ--GITVIIITHNSALAPMADRLIRFKSGRV 216
Cdd:PLN03130 1381 QLLSLARALLRRSKILVLDEATAAVDVRTDA----LIQKTIREEfkSCTMLIIAHRLNTIIDCDRILVLDAGRV 1450
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
4-170 |
1.20e-12 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 66.58 E-value: 1.20e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGegDARIhaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGT-VTVDGRD------------ 70
Cdd:PRK10938 261 IVLNNGVVSYN--DRPI--LHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNdLTLFGRRrgsgetiwdikk 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 71 ----VSSaneaQL-VEYRRAdvgfvfqfynlvpnlTALENVELAA--------QICPDSLD--AEQTLRQVGLGDRLANF 135
Cdd:PRK10938 337 higyVSS----SLhLDYRVS---------------TSVRNVILSGffdsigiyQAVSDRQQklAQQWLDILGIDKRTADA 397
|
170 180 190
....*....|....*....|....*....|....*.
gi 1469306817 136 PAQ-LSGGEQQRVSIARALAKNPKLLLCDEPTGALD 170
Cdd:PRK10938 398 PFHsLSWGQQRLALIVRALVKHPTLLILDEPLQGLD 433
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
55-213 |
3.01e-12 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 65.82 E-value: 3.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 55 GMDTATF---GTVTVDGRDVssaneaqlVEYRRADVGFVFQFYNLVP---NLTALENVELAAQICPDSlDAEQTLRQVGL 128
Cdd:PTZ00265 1267 GEDSTVFknsGKILLDGVDI--------CDYNLKDLRNLFSIVSQEPmlfNMSIYENIKFGKEDATRE-DVKRACKFAAI 1337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 129 GDRLANFPAQ-----------LSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITH 197
Cdd:PTZ00265 1338 DEFIESLPNKydtnvgpygksLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAH 1417
|
170
....*....|....*.
gi 1469306817 198 NSALAPMADRLIRFKS 213
Cdd:PTZ00265 1418 RIASIKRSDKIVVFNN 1433
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
4-225 |
4.85e-12 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 65.05 E-value: 4.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYgegDAR--IHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTV-DGRDVSSANeaqlV 80
Cdd:PTZ00265 383 IQFKNVRFHY---DTRkdVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIInDSHNLKDIN----L 455
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 81 EYRRADVGFVFQ----FYNLVPN-----LTALENVE-LAAQICPDSLDAEQTL--------------------------- 123
Cdd:PTZ00265 456 KWWRSKIGVVSQdpllFSNSIKNnikysLYSLKDLEaLSNYYNEDGNDSQENKnkrnscrakcagdlndmsnttdsneli 535
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 124 ------------------RQVGLGDRLANFP-----------AQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTG 174
Cdd:PTZ00265 536 emrknyqtikdsevvdvsKKVLIHDFVSALPdkyetlvgsnaSKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSE 615
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1469306817 175 KQILQLLQDTCRKQGITVIIITHNSALAPMADRLI----RFKSGRVESETVQQNP 225
Cdd:PTZ00265 616 YLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFvlsnRERGSTVDVDIIGEDP 670
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
23-198 |
6.11e-12 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 63.21 E-value: 6.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTvdgrdvssaNEAQLveyrraDVGFVFQFYNLVPNLTA 102
Cdd:PRK09544 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK---------RNGKL------RIGYVPQKLYLDTTLPL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 103 leNVELAAQICPDSLDAE--QTLRQVGLGdRLANFPAQ-LSGGEQQRVSIARALAKNPKLLLCDEPTGALDYkTGKQILQ 179
Cdd:PRK09544 85 --TVNRFLRLRPGTKKEDilPALKRVQAG-HLIDAPMQkLSGGETQRVLLARALLNRPQLLVLDEPTQGVDV-NGQVALY 160
|
170 180
....*....|....*....|
gi 1469306817 180 LLQDTCRKQ-GITVIIITHN 198
Cdd:PRK09544 161 DLIDQLRRElDCAVLMVSHD 180
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
23-219 |
7.06e-12 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 64.61 E-value: 7.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALN-ILGGMDTATFGTVTVDGrdvSSANEAQlveyrradVGFVFqfynlvpNLT 101
Cdd:PLN03232 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISaMLGELSHAETSSVVIRG---SVAYVPQ--------VSWIF-------NAT 694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 102 ALENVELAAQICPD----SLDAEQTLRQVGL---------GDRLANfpaqLSGGEQQRVSIARALAKNPKLLLCDEPTGA 168
Cdd:PLN03232 695 VRENILFGSDFESErywrAIDVTALQHDLDLlpgrdlteiGERGVN----ISGGQKQRVSMARAVYSNSDIYIFDDPLSA 770
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1469306817 169 LDYKTGKQILqllqDTCRK---QGITVIIITHNSALAPMADRLIRFKSGRVESE 219
Cdd:PLN03232 771 LDAHVAHQVF----DSCMKdelKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEE 820
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
4-173 |
8.78e-12 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 63.98 E-value: 8.78e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEgdaRIhALDGASFTVERGelAI--ILGASGAGKTTALNILGGMDTATFGTVTVdGRDVssaneaqlve 81
Cdd:PRK11819 325 IEAENLSKSFGD---RL-LIDDLSFSLPPG--GIvgIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GETV---------- 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 82 yrraDVGFVFQFY-NLVPNLTALENVElaaqicpDSLDaeqtlrQVGLGDRLANFPA-----------------QLSGGE 143
Cdd:PRK11819 388 ----KLAYVDQSRdALDPNKTVWEEIS-------GGLD------IIKVGNREIPSRAyvgrfnfkggdqqkkvgVLSGGE 450
|
170 180 190
....*....|....*....|....*....|
gi 1469306817 144 QQRVSIARALAKNPKLLLCDEPTGALDYKT 173
Cdd:PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVET 480
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
4-201 |
1.57e-11 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 63.23 E-value: 1.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIHALdgaSFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVssaneaqlveyr 83
Cdd:TIGR00954 452 IKFENIPLVTPNGDVLIESL---SFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGK------------ 516
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 radvgfvfQFYnlVPNLTALENVELAAQ-ICPDSL-----------DAEQTLRQVGLGDRL---------ANFPAQLSGG 142
Cdd:TIGR00954 517 --------LFY--VPQRPYMTLGTLRDQiIYPDSSedmkrrglsdkDLEQILDNVQLTHILereggwsavQDWMDVLSGG 586
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 143 EQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLlqdtCRKQGITVIIITHNSAL 201
Cdd:TIGR00954 587 EKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRL----CREFGITLFSVSHRKSL 641
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
33-201 |
1.70e-11 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 63.20 E-value: 1.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 33 GELAIILGASGAGKTTALNILGGmDTATF-----GTVTVDGRDvssanEAQLVEYRRADVGFVFQFYNLVPNLTALENVE 107
Cdd:TIGR00956 87 GELTVVLGRPGSGCSTLLKTIAS-NTDGFhigveGVITYDGIT-----PEEIKKHYRGDVVYNAETDVHFPHLTVGETLD 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 108 LAA-----QICPDSLDAEQ--------TLRQVGL--------GDrlaNFPAQLSGGEQQRVSIARALAKNPKLLLCDEPT 166
Cdd:TIGR00956 161 FAArcktpQNRPDGVSREEyakhiadvYMATYGLshtrntkvGN---DFVRGVSGGERKRVSIAEASLGGAKIQCWDNAT 237
|
170 180 190
....*....|....*....|....*....|....*
gi 1469306817 167 GALDYKTGKQILQLLQdtcrkqgiTVIIITHNSAL 201
Cdd:TIGR00956 238 RGLDSATALEFIRALK--------TSANILDTTPL 264
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
3-212 |
2.50e-11 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 62.52 E-value: 2.50e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 3 YIEFKDVIKAYGEgdariHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDgrdVSSANEAQlveY 82
Cdd:PRK13409 340 LVEYPDLTKKLGD-----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---LKISYKPQ---Y 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 83 RRADV-GFVFQF-YNLVPNL-TALENVELAaqicpDSLDAEQTL-RQVGlgdrlanfpaQLSGGEQQRVSIARALAKNPK 158
Cdd:PRK13409 409 IKPDYdGTVEDLlRSITDDLgSSYYKSEII-----KPLQLERLLdKNVK----------DLSGGELQRVAIAACLSRDAD 473
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 159 LLLCDEPTGALD----YKTGKQILQLLqdtcRKQGITVIIITHNSALAPM-ADRLIRFK 212
Cdd:PRK13409 474 LYLLDEPSAHLDveqrLAVAKAIRRIA----EEREATALVVDHDIYMIDYiSDRLMVFE 528
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
121-209 |
4.91e-11 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 61.95 E-value: 4.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 121 QTLRQVGLGD-RLANFPAQLSGGEQQRVSIARALAK---NPKLLLCDEPTGALDYKTGKQILQLLQdTCRKQGITVIIIT 196
Cdd:TIGR00630 811 QTLCDVGLGYiRLGQPATTLSGGEAQRIKLAKELSKrstGRTLYILDEPTTGLHFDDIKKLLEVLQ-RLVDKGNTVVVIE 889
|
90
....*....|...
gi 1469306817 197 HNSALAPMADRLI 209
Cdd:TIGR00630 890 HNLDVIKTADYII 902
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
27-217 |
5.69e-11 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 61.72 E-value: 5.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 27 SFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGrdvSSANEAQLVEYRRADVGFVFQFYNlvPNLTAlenv 106
Cdd:PTZ00243 680 SVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAER---SIAYVPQQAWIMNATVRGNILFFD--EEDAA---- 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 107 ELAAQICPDSLDAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQllqdTC- 185
Cdd:PTZ00243 751 RLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVE----ECf 826
|
170 180 190
....*....|....*....|....*....|....
gi 1469306817 186 --RKQGITVIIITHNSALAPMADRLIRFKSGRVE 217
Cdd:PTZ00243 827 lgALAGKTRVLATHQVHVVPRADYVVALGDGRVE 860
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
11-211 |
7.08e-11 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 60.11 E-value: 7.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 11 KAYGEGDARIHAlDGASFTveRGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEaqlveYRRADV-GF 89
Cdd:cd03237 6 MKKTLGEFTLEV-EGGSIS--ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQ-----YIKADYeGT 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 90 VFQF-YNLVPNLTALE--NVELAaqicpDSLDAEQTLrqvglgDRLANfpaQLSGGEQQRVSIARALAKNPKLLLCDEPT 166
Cdd:cd03237 78 VRDLlSSITKDFYTHPyfKTEIA-----KPLQIEQIL------DREVP---ELSGGELQRVAIAACLSKDADIYLLDEPS 143
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1469306817 167 GALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAPM-ADRLIRF 211
Cdd:cd03237 144 AYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYlADRLIVF 189
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
121-209 |
7.78e-11 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 60.32 E-value: 7.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 121 QTLRQVGLGD-RLANFPAQLSGGEQQRVSIARALAK---NPKLLLCDEPTGALDYKTGKQILQLLQdTCRKQGITVIIIT 196
Cdd:cd03271 151 QTLCDVGLGYiKLGQPATTLSGGEAQRIKLAKELSKrstGKTLYILDEPTTGLHFHDVKKLLEVLQ-RLVDKGNTVVVIE 229
|
90
....*....|...
gi 1469306817 197 HNSALAPMADRLI 209
Cdd:cd03271 230 HNLDVIKCADWII 242
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
23-179 |
8.35e-11 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 60.26 E-value: 8.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRdvssaneaqlveyrradVGFVFQFYNLVPNlTA 102
Cdd:cd03291 53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR-----------------ISFSSQFSWIMPG-TI 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 103 LENVelAAQICPDSLDAEQTLRQVGLGDRLANFPAQ-----------LSGGEQQRVSIARALAKNPKLLLCDEPTGALDY 171
Cdd:cd03291 115 KENI--IFGVSYDEYRYKSVVKACQLEEDITKFPEKdntvlgeggitLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
|
....*...
gi 1469306817 172 KTGKQILQ 179
Cdd:cd03291 193 FTEKEIFE 200
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
38-197 |
9.84e-11 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 60.90 E-value: 9.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 38 ILGASGAGKTTALNILGGMDTATFGtvtvdgrdvssanEAQLVE-YRradVGFVFQFYNLVPNLTALENVELAAQICPDS 116
Cdd:PRK11819 38 VLGLNGAGKSTLLRIMAGVDKEFEG-------------EARPAPgIK---VGYLPQEPQLDPEKTVRENVEEGVAEVKAA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 117 LD--------------------AEQT-----LRQVGLGD------------RLanfP------AQLSGGEQQRVSIARAL 153
Cdd:PRK11819 102 LDrfneiyaayaepdadfdalaAEQGelqeiIDAADAWDldsqleiamdalRC---PpwdakvTKLSGGERRRVALCRLL 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1469306817 154 AKNPKLLLCDEPTGALDYKTGKQILQLLQDTcrkQGiTVIIITH 197
Cdd:PRK11819 179 LEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PG-TVVAVTH 218
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
23-198 |
4.83e-10 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 58.09 E-value: 4.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVeyRRADVGFVFQ------FYNL 96
Cdd:PRK13638 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA--LRQQVATVFQdpeqqiFYTD 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 97 VPNLTA--LENVELAAQICPDSLDAEQTLRQvglGDRLANFPAQ-LSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKT 173
Cdd:PRK13638 95 IDSDIAfsLRNLGVPEAEITRRVDEALTLVD---AQHFRHQPIQcLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAG 171
|
170 180
....*....|....*....|....*
gi 1469306817 174 GKQILQLLQDTCrKQGITVIIITHN 198
Cdd:PRK13638 172 RTQMIAIIRRIV-AQGNHVIISSHD 195
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
23-179 |
5.12e-10 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 59.15 E-value: 5.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRdvssaneaqlveyrradVGFVFQFYNLVPNlTA 102
Cdd:TIGR01271 442 LKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR-----------------ISFSPQTSWIMPG-TI 503
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 103 LENVELAaqICPDSLDAEQTLRQVGLGDRLANFPAQ-----------LSGGEQQRVSIARALAKNPKLLLCDEPTGALDY 171
Cdd:TIGR01271 504 KDNIIFG--LSYDEYRYTSVIKACQLEEDIALFPEKdktvlgeggitLSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581
|
....*...
gi 1469306817 172 KTGKQILQ 179
Cdd:TIGR01271 582 VTEKEIFE 589
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
7-197 |
5.47e-10 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 58.77 E-value: 5.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 7 KDVIKAYGEGDARIhaLDGASFTVERGELAIILGASGAGKTTALNILGGMdTATFGTVTVDGrdvSSANEAQLVEYRRAd 86
Cdd:TIGR01271 1221 QGLTAKYTEAGRAV--LQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL-LSTEGEIQIDG---VSWNSVTLQTWRKA- 1293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 87 VGFVFQFYnLVPNLTALENVELAAQICPDSLdaEQTLRQVGLGDRLANFPAQL-----------SGGEQQRVSIARALAK 155
Cdd:TIGR01271 1294 FGVIPQKV-FIFSGTFRKNLDPYEQWSDEEI--WKVAEEVGLKSVIEQFPDKLdfvlvdggyvlSNGHKQLMCLARSILS 1370
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1469306817 156 NPKLLLCDEPTGALDYKTgkqiLQLLQDTCRK--QGITVIIITH 197
Cdd:TIGR01271 1371 KAKILLLDEPSAHLDPVT----LQIIRKTLKQsfSNCTVILSEH 1410
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
13-196 |
1.21e-09 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 57.83 E-value: 1.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 13 YGegdaRIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYRRAdvgfvfq 92
Cdd:NF033858 11 YG----KTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDMADARHRRAVCPRIA------- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 93 fY-------NLVPNLTALENV------------ELAAQIcpDSLdaeqtLRQVGLG---DRLAnfpAQLSGGEQQRVSIA 150
Cdd:NF033858 80 -YmpqglgkNLYPTLSVFENLdffgrlfgqdaaERRRRI--DEL-----LRATGLApfaDRPA---GKLSGGMKQKLGLC 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1469306817 151 RALAKNPKLLLCDEPTgaldykTG------KQILQLLqDTCRKQ--GITVIIIT 196
Cdd:NF033858 149 CALIHDPDLLILDEPT------TGvdplsrRQFWELI-DRIRAErpGMSVLVAT 195
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
121-198 |
1.50e-09 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 57.34 E-value: 1.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 121 QTLRQVGLGD-RLANfPA-QLSGGEQQRVSIARALAK---NPKLLLCDEPTgaldykTG------KQILQLLQdTCRKQG 189
Cdd:COG0178 808 QTLQDVGLGYiKLGQ-PAtTLSGGEAQRVKLASELSKrstGKTLYILDEPT------TGlhfhdiRKLLEVLH-RLVDKG 879
|
....*....
gi 1469306817 190 ITVIIITHN 198
Cdd:COG0178 880 NTVVVIEHN 888
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
138-212 |
2.05e-09 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 54.67 E-value: 2.05e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 138 QLSGGEQQRVSIARALAKNPK----LLLCDEPTGALDYKTGKQILQLLQDTcRKQGITVIIITHNSALAPMADRLIRFK 212
Cdd:cd03227 77 QLSGGEKELSALALILALASLkprpLYILDEIDRGLDPRDGQALAEAILEH-LVKGAQVIVITHLPELAELADKLIHIK 154
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
32-215 |
2.51e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 54.30 E-value: 2.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 32 RGELAIILGASGAGKTTALNILGGmdtatfgtvtvdgrdvssaneaqlvEYRRADVGFVFqfynlvpnltalenvelaaq 111
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALAR-------------------------ELGPPGGGVIY-------------------- 35
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 112 ICPDslDAEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQL-----LQDTCR 186
Cdd:smart00382 36 IDGE--DILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLeelrlLLLLKS 113
|
170 180 190
....*....|....*....|....*....|....*
gi 1469306817 187 KQGITVIIITHNS------ALAPMADRLIRFKSGR 215
Cdd:smart00382 114 EKNLTVILTTNDEkdlgpaLLRRRFDRRIVLLLIL 148
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
4-197 |
2.62e-09 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 56.02 E-value: 2.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIhaLDGASFTVERGELAIILGASGAGKTTALNILGGMdTATFGTVTVDGrdvSSANEAQLVEYR 83
Cdd:cd03289 3 MTVKDLTAKYTEGGNAV--LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL-LNTEGDIQIDG---VSWNSVPLQKWR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RAdvgfvfqfYNLVPNLTALENVELAAQICPDSLDAEQTL----RQVGLGDRLANFPAQL-----------SGGEQQRVS 148
Cdd:cd03289 77 KA--------FGVIPQKVFIFSGTFRKNLDPYGKWSDEEIwkvaEEVGLKSVIEQFPGQLdfvlvdggcvlSHGHKQLMC 148
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1469306817 149 IARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCrkQGITVIIITH 197
Cdd:cd03289 149 LARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEH 195
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
3-197 |
3.53e-09 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 56.39 E-value: 3.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 3 YIEFKDVIKAYGEGDARIHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATF--GTVTVDGRDVSSANEAQLV 80
Cdd:PLN03140 876 FVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYieGDIRISGFPKKQETFARIS 955
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 81 EY-RRADVGfvfqfynlVPNLTALENVELAAQI-CPDSLDAEQTLRQV----------GLGDRLANFPA--QLSGGEQQR 146
Cdd:PLN03140 956 GYcEQNDIH--------SPQVTVRESLIYSAFLrLPKEVSKEEKMMFVdevmelveldNLKDAIVGLPGvtGLSTEQRKR 1027
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1469306817 147 VSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCrKQGITVIIITH 197
Cdd:PLN03140 1028 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIH 1077
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
4-197 |
7.00e-09 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 55.72 E-value: 7.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIhaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVssaneaqlveyr 83
Cdd:TIGR00957 1285 VEFRNYCLRYREDLDLV--LRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNI------------ 1350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 rADVG---FVFQFyNLVPNLTALENVELAAQICPDSLDAEQ----TLRQVGLGDRLANFPAQ-----------LSGGEQQ 145
Cdd:TIGR00957 1351 -AKIGlhdLRFKI-TIIPQDPVLFSGSLRMNLDPFSQYSDEevwwALELAHLKTFVSALPDKldhecaeggenLSVGQRQ 1428
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1469306817 146 RVSIARALAKNPKLLLCDEPTGALDYKTGkqilQLLQDTCRKQ--GITVIIITH 197
Cdd:TIGR00957 1429 LVCLARALLRKTKILVLDEATAAVDLETD----NLIQSTIRTQfeDCTVLTIAH 1478
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
7-201 |
8.14e-09 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 54.29 E-value: 8.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 7 KDVIKAYGEGDARIHALDgasfTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTV--DGRDVSSA---NEAQ--L 79
Cdd:cd03236 4 DEPVHRYGPNSFKLHRLP----VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDppDWDEILDEfrgSELQnyF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 80 VEYRRADVGFVF--QFYNLVPNLTALENVELAAQIcpDSLDAEQTL-RQVGLGDRLANFPAQLSGGEQQRVSIARALAKN 156
Cdd:cd03236 80 TKLLEGDVKVIVkpQYVDLIPKAVKGKVGELLKKK--DERGKLDELvDQLELRHVLDRNIDQLSGGELQRVAIAAALARD 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1469306817 157 PKLLLCDEPTGALD----YKTGKQILQLLQDtcrkqGITVIIITHNSAL 201
Cdd:cd03236 158 ADFYFFDEPSSYLDikqrLNAARLIRELAED-----DNYVLVVEHDLAV 201
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
121-198 |
8.36e-09 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 55.08 E-value: 8.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 121 QTLRQVGLGD-RLANfPA-QLSGGEQQRVSIARALAKNPK---LLLCDEPTgaldykTG------KQILQLLQdTCRKQG 189
Cdd:PRK00349 812 QTLVDVGLGYiKLGQ-PAtTLSGGEAQRVKLAKELSKRSTgktLYILDEPT------TGlhfediRKLLEVLH-RLVDKG 883
|
....*....
gi 1469306817 190 ITVIIITHN 198
Cdd:PRK00349 884 NTVVVIEHN 892
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
20-197 |
1.38e-08 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 54.35 E-value: 1.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 20 IHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEyrrADVGFVFQFYNLVPN 99
Cdd:PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALE---NGISMVHQELNLVLQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 100 LTALENVELA-----------------AQICPDSLDAEQTLRqvglgDRLANfpaqLSGGEQQRVSIARALAKNPKLLLC 162
Cdd:PRK10982 88 RSVMDNMWLGryptkgmfvdqdkmyrdTKAIFDELDIDIDPR-----AKVAT----LSVSQMQMIEIAKAFSYNAKIVIM 158
|
170 180 190
....*....|....*....|....*....|....*
gi 1469306817 163 DEPTGALDYKTGKQILQLLQDTcRKQGITVIIITH 197
Cdd:PRK10982 159 DEPTSSLTEKEVNHLFTIIRKL-KERGCGIVYISH 192
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
139-209 |
4.64e-08 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 53.29 E-value: 4.64e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1469306817 139 LSGGEQQRVSIARAL---AKNPKLLLCDEPTGALDYKTGKQILQLLQdTCRKQGITVIIITHNSALAPMADRLI 209
Cdd:PRK00635 810 LSGGEIQRLKLAYELlapSKKPTLYVLDEPTTGLHTHDIKALIYVLQ-SLTHQGHTVVIIEHNMHVVKVADYVL 882
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
27-197 |
4.98e-08 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 53.03 E-value: 4.98e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 27 SFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGR-DVssaneAQLVEYRRAdvgfvfqfynLVPNLTALEN 105
Cdd:PRK11147 339 SAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKlEV-----AYFDQHRAE----------LDPEKTVMDN 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 106 VElaaqicpdslDAEQTL------RQVgLG---DRL-----ANFPAQ-LSGGEQQRVSIARALAKNPKLLLCDEPTGALD 170
Cdd:PRK11147 404 LA----------EGKQEVmvngrpRHV-LGylqDFLfhpkrAMTPVKaLSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472
|
170 180
....*....|....*....|....*...
gi 1469306817 171 YKTgkqiLQLLQDTCRK-QGiTVIIITH 197
Cdd:PRK11147 473 VET----LELLEELLDSyQG-TVLLVSH 495
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
7-198 |
8.99e-08 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 52.20 E-value: 8.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 7 KDVIKAYGEGDARiHALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGrdvssanEAQLVEYRRAd 86
Cdd:PRK13545 25 KDLFFRSKDGEYH-YALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG-------SAALIAISSG- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 87 vgfvfqfynLVPNLTALENVELAA-----------QICPDSLDaeqtLRQVGlgdRLANFPAQ-LSGGEQQRVSIARALA 154
Cdd:PRK13545 96 ---------LNGQLTGIENIELKGlmmgltkekikEIIPEIIE----FADIG---KFIYQPVKtYSSGMKSRLGFAISVH 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1469306817 155 KNPKLLLCDEPTGALDYKTGKQILQLLQDTcRKQGITVIIITHN 198
Cdd:PRK13545 160 INPDILVIDEALSVGDQTFTKKCLDKMNEF-KEQGKTIFFISHS 202
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
40-206 |
1.51e-07 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 51.43 E-value: 1.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 40 GASGAGKTTALNILGGMDTATFGTVTVD-GRDVSSANEAQLV--EYRRADVgfVFQ--------------FYNLvPNLT- 101
Cdd:PRK15064 34 GANGCGKSTFMKILGGDLEPSAGNVSLDpNERLGKLRQDQFAfeEFTVLDT--VIMghtelwevkqerdrIYAL-PEMSe 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 102 --ALENVELAAQICP-DSLDAE----QTLRQVGLGDRLANFP-AQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKT 173
Cdd:PRK15064 111 edGMKVADLEVKFAEmDGYTAEaragELLLGVGIPEEQHYGLmSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINT 190
|
170 180 190
....*....|....*....|....*....|....*...
gi 1469306817 174 gkqiLQLLQDTCRKQGITVIIITH-----NSALAPMAD 206
Cdd:PRK15064 191 ----IRWLEDVLNERNSTMIIISHdrhflNSVCTHMAD 224
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
4-216 |
2.89e-07 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 50.93 E-value: 2.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDARIhaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANeaqLVEYR 83
Cdd:PTZ00243 1309 LVFEGVQMRYREGLPLV--LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYG---LRELR 1383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 RadvgfvfQFyNLVP------NLTALENVELAAQICPDSLDAeqTLRQVGLGDRLA---------------NFpaqlSGG 142
Cdd:PTZ00243 1384 R-------QF-SMIPqdpvlfDGTVRQNVDPFLEASSAEVWA--ALELVGLRERVAsesegidsrvleggsNY----SVG 1449
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1469306817 143 EQQRVSIARALAK-NPKLLLCDEPTGALDYKTGKQIlqllQDTCRK--QGITVIIITHNSALAPMADRLIRFKSGRV 216
Cdd:PTZ00243 1450 QRQLMCMARALLKkGSGFILMDEATANIDPALDRQI----QATVMSafSAYTVITIAHRLHTVAQYDKIIVMDHGAV 1522
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
18-209 |
3.36e-07 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 49.56 E-value: 3.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 18 ARIHALDGASFTVERGELAIILGASGAGKTT---------------------ALNILGGMDTATfgtVT-VDGRDVSSAN 75
Cdd:cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSlafdtiyaegqrryveslsayARQFLGQMDKPD---VDsIEGLSPAIAI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 76 EAQLVEYR-RADVGFVFQFYNLVPNLTAleNVELAAQIcpdsldaeQTLRQVGLG----DRLANfpaQLSGGEQQRVSIA 150
Cdd:cd03270 83 DQKTTSRNpRSTVGTVTEIYDYLRLLFA--RVGIRERL--------GFLVDVGLGyltlSRSAP---TLSGGEAQRIRLA 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1469306817 151 RALAKNPK--LLLCDEPTGALDYKTGKQILQLLQDTcRKQGITVIIITHNSALAPMADRLI 209
Cdd:cd03270 150 TQIGSGLTgvLYVLDEPSIGLHPRDNDRLIETLKRL-RDLGNTVLVVEHDEDTIRAADHVI 209
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
7-201 |
4.66e-07 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 49.78 E-value: 4.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 7 KDVIKAYGEGDARIHALDgasfTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGrdvsSANEAqLVEYRrad 86
Cdd:COG1245 77 EDPVHRYGENGFRLYGLP----VPKKGKVTGILGPNGIGKSTALKILSGELKPNLGDYDEEP----SWDEV-LKRFR--- 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 87 vGFVFQFYnlvpnLTALENVELAAQICPDSLD---------AEQTLRQV-------GLGDRLANFP------AQLSGGEQ 144
Cdd:COG1245 145 -GTELQDY-----FKKLANGEIKVAHKPQYVDlipkvfkgtVRELLEKVdergkldELAEKLGLENildrdiSELSGGEL 218
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1469306817 145 QRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKqGITVIIITHNSAL 201
Cdd:COG1245 219 QRVAIAAALLRDADFYFFDEPSSYLDIYQRLNVARLIRELAEE-GKYVLVVEHDLAI 274
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
4-211 |
6.91e-07 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 47.95 E-value: 6.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGegDARIHALDGasfTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSsaneaqlveYR 83
Cdd:cd03222 1 QLYPDCVKRYG--VFFLLVELG---VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPV---------YK 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 radvgfvfqfynlvpnltalenvelaaqicPDSLDaeqtlrqvglgdrlanfpaqLSGGEQQRVSIARALAKNPKLLLCD 163
Cdd:cd03222 67 ------------------------------PQYID--------------------LSGGELQRVAIAAALLRNATFYLFD 96
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1469306817 164 EPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAP-MADRLIRF 211
Cdd:cd03222 97 EPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDyLSDRIHVF 145
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
4-216 |
9.15e-07 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 49.12 E-value: 9.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEGDArihaLDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTvdgrdvSSANeaqlveyr 83
Cdd:PRK15064 320 LEVENLTKGFDNGPL----FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVK------WSEN-------- 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 84 rADVGFVFQ-----FYNlvpNLTALENVELAAQICpdslDAEQTLRQVgLGdRL------ANFPAQ-LSGGEQQRVSIAR 151
Cdd:PRK15064 382 -ANIGYYAQdhaydFEN---DLTLFDWMSQWRQEG----DDEQAVRGT-LG-RLlfsqddIKKSVKvLSGGEKGRMLFGK 451
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 152 ALAKNPKLLLCDEPTGALDYKTgkqiLQLLQDTCRKQGITVIIITHN----SALapmADRLIRFKSGRV 216
Cdd:PRK15064 452 LMMQKPNVLVMDEPTNHMDMES----IESLNMALEKYEGTLIFVSHDrefvSSL---ATRIIEITPDGV 513
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
7-170 |
1.24e-06 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 48.65 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 7 KDVIKAYGEGDARIHALDgasfTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGrdvsSANEaqLVEYRRad 86
Cdd:PRK13409 77 EEPVHRYGVNGFKLYGLP----IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEP----SWDE--VLKRFR-- 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 87 vGFVFQFYnlvpnLTALENVELAAQICPDSLDA---------EQTLRQV---GLGDRLANFPA----------QLSGGEQ 144
Cdd:PRK13409 145 -GTELQNY-----FKKLYNGEIKVVHKPQYVDLipkvfkgkvRELLKKVderGKLDEVVERLGlenildrdisELSGGEL 218
|
170 180
....*....|....*....|....*.
gi 1469306817 145 QRVSIARALAKNPKLLLCDEPTGALD 170
Cdd:PRK13409 219 QRVAIAAALLRDADFYFFDEPTSYLD 244
|
|
| ABC_sbcCD |
cd03279 |
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are ... |
9-219 |
1.56e-06 |
|
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Pssm-ID: 213246 [Multi-domain] Cd Length: 213 Bit Score: 47.26 E-value: 1.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 9 VIKAYGeGDARIHALDgasFT-VERGELAIILGASGAGKTTalnILGGMDTATFGTVTVDGRDVSSANEAQLVEyRRADV 87
Cdd:cd03279 7 ELKNFG-PFREEQVID---FTgLDNNGLFLICGPTGAGKST---ILDAITYALYGKTPRYGRQENLRSVFAPGE-DTAEV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 88 GFVFQFYNLVPNLTALENvelaaqicpdsLDAEQ-----TLRQVGLGDRLANFPAQLSGGEQQRVSIARALA-------- 154
Cdd:cd03279 79 SFTFQLGGKKYRVERSRG-----------LDYDQftrivLLPQGEFDRFLARPVSTLSGGETFLASLSLALAlsevlqnr 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1469306817 155 --KNPKLLLCDEPTGALDYKTGKQILQLLqDTCRKQGITVIIITHNSALAPMADRLIRFKSGRVESE 219
Cdd:cd03279 148 ggARLEALFIDEGFGTLDPEALEAVATAL-ELIRTENRMVGVISHVEELKERIPQRLEVIKTPGGSR 213
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
32-210 |
1.69e-06 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 47.22 E-value: 1.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 32 RGELAIILGASGAGKTTalnILGGMDTATFGTVTVDGRDVSSANEAQLVEYRRADVGFVFQF-----YNLVPNLTALENV 106
Cdd:cd03240 21 FSPLTLIVGQNGAGKTT---IIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENangkkYTITRSLAILENV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 107 elaaQICpdsldaeqtlRQVGLGDRLANFPAQLSGGEQQ------RVSIARALAKNPKLLLCDEPTGALD-YKTGKQILQ 179
Cdd:cd03240 98 ----IFC----------HQGESNWPLLDMRGRCSGGEKVlasliiRLALAETFGSNCGILALDEPTTNLDeENIEESLAE 163
|
170 180 190
....*....|....*....|....*....|.
gi 1469306817 180 LLQDTCRKQGITVIIITHNSALAPMADRLIR 210
Cdd:cd03240 164 IIEERKSQKNFQLIVITHDEELVDAADHIYR 194
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
121-214 |
2.12e-06 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 48.29 E-value: 2.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 121 QTLRQVGLGD-RLANFPAQLSGGEQQRVSIARAL---AKNPKLLLCDEPTGALDYKTGKQILQLLQdTCRKQGITVIIIT 196
Cdd:PRK00635 1681 QALIDNGLGYlPLGQNLSSLSLSEKIAIKIAKFLylpPKHPTLFLLDEIATSLDNQQKSALLVQLR-TLVSLGHSVIYID 1759
|
90
....*....|....*...
gi 1469306817 197 HNSALAPMADRLIRFKSG 214
Cdd:PRK00635 1760 HDPALLKQADYLIEMGPG 1777
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
109-195 |
2.83e-06 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 47.32 E-value: 2.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 109 AAQICPDSLDA----EQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLqDT 184
Cdd:PRK10938 102 TAEIIQDEVKDparcEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELL-AS 180
|
90
....*....|.
gi 1469306817 185 CRKQGITVIII 195
Cdd:PRK10938 181 LHQSGITLVLV 191
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
23-170 |
3.75e-06 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 47.09 E-value: 3.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKT-TALNILG---GMDTAtfGTVTVDG-----RDVSSANEAQLV---EYRRAdvgfv 90
Cdd:NF040905 276 VDDVSLNVRRGEIVGIAGLMGAGRTeLAMSVFGrsyGRNIS--GTVFKDGkevdvSTVSDAIDAGLAyvtEDRKG----- 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 91 fqfYNLVPNLTALENVELAA--QICPDSLDAEQTLRQVGLGDRLA-NFPA--------QLSGGEQQRVSIARALAKNPKL 159
Cdd:NF040905 349 ---YGLNLIDDIKRNITLANlgKVSRRGVIDENEEIKVAEEYRKKmNIKTpsvfqkvgNLSGGNQQKVVLSKWLFTDPDV 425
|
170
....*....|.
gi 1469306817 160 LLCDEPTGALD 170
Cdd:NF040905 426 LILDEPTRGID 436
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
38-170 |
5.33e-06 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 46.70 E-value: 5.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 38 ILGASGAGKTTALNILGGMDTATFGTVTV-DGRDVSSANEAQLvEYRRADVgfvfqfynlvpnlTALENVelaAQICPDS 116
Cdd:PRK10636 343 LLGRNGAGKSTLIKLLAGELAPVSGEIGLaKGIKLGYFAQHQL-EFLRADE-------------SPLQHL---ARLAPQE 405
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 117 LdaEQTLRQ----VGL-GDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALD 170
Cdd:PRK10636 406 L--EQKLRDylggFGFqGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
111-209 |
5.86e-06 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 46.75 E-value: 5.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 111 QICPDSLDAEQTLRqvGLGDRLANF---------P----AQLSGGEQQRVSIARALAKNPK--LLLCDEPTGALDYKTGK 175
Cdd:PRK00635 438 QLPSKSLSIEEVLQ--GLKSRLSILidlglpyltPeralATLSGGEQERTALAKHLGAELIgiTYILDEPSIGLHPQDTH 515
|
90 100 110
....*....|....*....|....*....|....
gi 1469306817 176 QILQLLQdTCRKQGITVIIITHNSALAPMADRLI 209
Cdd:PRK00635 516 KLINVIK-KLRDQGNTVLLVEHDEQMISLADRII 548
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
139-215 |
1.26e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 45.66 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 139 LSGGEQQ------RVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGI--TVIIITHNSALAPMADRLIR 210
Cdd:PRK01156 802 LSGGEKTavafalRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDipQVIMISHHRELLSVADVAYE 881
|
....*..
gi 1469306817 211 FK--SGR 215
Cdd:PRK01156 882 VKksSGS 888
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
23-197 |
1.52e-05 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 44.78 E-value: 1.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGGMD--TATFGTVTVDGRDVssaneAQLVEYRRADVG--FVFQFYNLVP 98
Cdd:PRK09580 17 LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREdyEVTGGTVEFKGKDL-----LELSPEDRAGEGifMAFQYPVEIP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 99 NL-------TALENVELAAQICP-DSLDAEQTLRQvglGDRLANFPAQL---------SGGEQQRVSIARALAKNPKLLL 161
Cdd:PRK09580 92 GVsnqfflqTALNAVRSYRGQEPlDRFDFQDLMEE---KIALLKMPEDLltrsvnvgfSGGEKKRNDILQMAVLEPELCI 168
|
170 180 190
....*....|....*....|....*....|....*.
gi 1469306817 162 CDEPTGALDYKTGKQILQLLqDTCRKQGITVIIITH 197
Cdd:PRK09580 169 LDESDSGLDIDALKIVADGV-NSLRDGKRSFIIVTH 203
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
139-210 |
1.54e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 1.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 139 LSGGEQQ------RVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRK--QgitVIIITHNSALAPMADRLIR 210
Cdd:PRK03918 789 LSGGERIalglafRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKipQ---VIIVSHDEELKDAADYVIR 865
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
4-216 |
2.95e-05 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 44.34 E-value: 2.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 4 IEFKDVIKAYGEgdarIHALDGASFTVERGELAIILGASGAGKTTAL---NILG---GMDTATFGTVTVDGRdvssANEA 77
Cdd:NF000106 14 VEVRGLVKHFGE----VKAVDGVDLDVREGTVLGVLGP*GAA**RGAlpaHV*GpdaGRRPWRF*TWCANRR----ALRR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 78 QLVEYRRADVGFVFQFynlvpnlTALENVELAAQICPDSLD-----AEQTLRQVGLGDRLANFPAQLSGGEQQRVSIARA 152
Cdd:NF000106 86 TIG*HRPVR*GRRESF-------SGRENLYMIGR*LDLSRKdararADELLERFSLTEAAGRAAAKYSGGMRRRLDLAAS 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1469306817 153 LAKNPKLLLCDEPTGALDYKTGKQILQLLQDTCRkQGITVIIITHNSALAP-MADRLIRFKSGRV 216
Cdd:NF000106 159 MIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVR-DGATVLLTTQYMEEAEqLAHELTVIDRGRV 222
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
21-198 |
3.76e-05 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 43.65 E-value: 3.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 21 HALDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGrdvssaneaqlveyrraDVGFVFQFYNLVPNL 100
Cdd:PRK13546 38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-----------------EVSVIAISAGLSGQL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 101 TALENVE---LAAQICPDSLDA--EQTLRQVGLGDRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTGK 175
Cdd:PRK13546 101 TGIENIEfkmLCMGFKRKEIKAmtPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQ 180
|
170 180
....*....|....*....|...
gi 1469306817 176 QILQLLQDTcRKQGITVIIITHN 198
Cdd:PRK13546 181 KCLDKIYEF-KEQNKTIFFVSHN 202
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
38-201 |
2.41e-04 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 41.77 E-value: 2.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 38 ILGASGAGKTTALNILGGMDTATFGTVtvdgrdvssaneaqlveYRRADVGF-VFQFYNlVPNLTALENVELAAQIC-PD 115
Cdd:PLN03073 540 MVGPNGIGKSTILKLISGELQPSSGTV-----------------FRSAKVRMaVFSQHH-VDGLDLSSNPLLYMMRCfPG 601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 116 SLdaEQTLR----QVGLGDRLANFPA-QLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYKTgkqILQLLQDTCRKQGi 190
Cdd:PLN03073 602 VP--EQKLRahlgSFGVTGNLALQPMyTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDA---VEALIQGLVLFQG- 675
|
170
....*....|.
gi 1469306817 191 TVIIITHNSAL 201
Cdd:PLN03073 676 GVLMVSHDEHL 686
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
138-170 |
3.89e-04 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 41.00 E-value: 3.89e-04
10 20 30
....*....|....*....|....*....|...
gi 1469306817 138 QLSGGEQQRVSIARALAKNPKLLLCDEPTGALD 170
Cdd:PLN03073 344 TFSGGWRMRIALARALFIEPDLLLLDEPTNHLD 376
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
69-201 |
7.55e-04 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 39.68 E-value: 7.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 69 RDVSSANEAQLVEYRRADVGFVFQFYNLVPNLTALENVELAAQICPDSLDAEQTLRQVGLGDR--LANFPA-QLSGGEQQ 145
Cdd:pfam13304 164 EDWAVLDLAADLALFPDLKELLQRLVRGLKLADLNLSDLGEGIEKSLLVDDRLRERGLILLENggGGELPAfELSDGTKR 243
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 146 ---RVSIARALAKNPKLLLCDEPTGALDYKTGKQILQLLQDtCRKQGITVIIITHNSAL 201
Cdd:pfam13304 244 llaLLAALLSALPKGGLLLIDEPESGLHPKLLRRLLELLKE-LSRNGAQLILTTHSPLL 301
|
|
| COG1106 |
COG1106 |
ATPase/GTPase, AAA15 family [General function prediction only]; |
149-210 |
8.87e-04 |
|
ATPase/GTPase, AAA15 family [General function prediction only];
Pssm-ID: 440723 [Multi-domain] Cd Length: 330 Bit Score: 39.64 E-value: 8.87e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1469306817 149 IARALAKNpKLLLCDEPTGALDYKTGKQILQLLQDTCRKQGITVIIITHNSALAPMADRLIR 210
Cdd:COG1106 217 LLDALAKG-GVLLIDEIEASLHPSLLRKLLKLFLDLANKNNAQLIFTTHSTELLDAFLELLR 277
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
136-210 |
1.00e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.02 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 136 PAQLSGGEQQ------RVSIARALAKN-------PKLLLcDEPTGALDYKTGKQILQLLQDTcRKQGITVIII-THNSAL 201
Cdd:PRK02224 779 PEQLSGGERAlfnlslRCAIYRLLAEGiegdaplPPLIL-DEPTVFLDSGHVSQLVDLVESM-RRLGVEQIVVvSHDDEL 856
|
....*....
gi 1469306817 202 APMADRLIR 210
Cdd:PRK02224 857 VGAADDLVR 865
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
101-225 |
1.63e-03 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 39.44 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 101 TALENVElaaqicpDSLDAEQTLRQVGL--------GDRLANfpaQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYK 172
Cdd:PLN03140 301 TAMEGVK-------SSLITDYTLKILGLdickdtivGDEMIR---GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSS 370
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1469306817 173 TGKQILQLLQDTCRKQGITVIIithnSALAP------MADRLIRFKSGRVesetVQQNP 225
Cdd:PLN03140 371 TTYQIVKCLQQIVHLTEATVLM----SLLQPapetfdLFDDIILLSEGQI----VYQGP 421
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
63-209 |
2.35e-03 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 38.84 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 63 TVTVDGRDVssaneAQLVEYRRADVGFVFQFYNLVPnltalENVELAAQICPDSLDAEQTLRQVGLG----DRLANfpaQ 138
Cdd:TIGR00630 422 AVTVGGKSI-----ADVSELSIREAHEFFNQLTLTP-----EEKKIAEEVLKEIRERLGFLIDVGLDylslSRAAG---T 488
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1469306817 139 LSGGEQQRVSIARALAKNPK--LLLCDEPTGALDYKTGKQILQLLQDTcRKQGITVIIITHNSALAPMADRLI 209
Cdd:TIGR00630 489 LSGGEAQRIRLATQIGSGLTgvLYVLDEPSIGLHQRDNRRLINTLKRL-RDLGNTLIVVEHDEDTIRAADYVI 560
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
23-209 |
2.66e-03 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 38.61 E-value: 2.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 23 LDGASFTVERGELAIILGASGAGKTTALNILGGMDTATFGTVTVDGRDVSSANEAQLVEYRRADVGFVF----QFYNLVP 98
Cdd:PRK10636 17 LDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIdgdrEYRQLEA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469306817 99 NLTAL--ENVELAAQICPDSLDAEQ--TLRQV------GLG---DRLANFPAQLSGGEQQRVSIARALAKNPKLLLCDEP 165
Cdd:PRK10636 97 QLHDAneRNDGHAIATIHGKLDAIDawTIRSRaasllhGLGfsnEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEP 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1469306817 166 TGALDYKTgkqiLQLLQDTCRKQGITVIIITHN-SALAPMADRLI 209
Cdd:PRK10636 177 TNHLDLDA----VIWLEKWLKSYQGTLILISHDrDFLDPIVDKII 217
|
|
| transpos_IS607 |
NF033518 |
IS607 family transposase; |
167-229 |
7.88e-03 |
|
IS607 family transposase;
Pssm-ID: 468054 [Multi-domain] Cd Length: 187 Bit Score: 36.08 E-value: 7.88e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1469306817 167 GALDYKtGKQILQLLQDTCRKQgITVIIITHNsalapmaDRLIRF---------KSGRVESETVQQNPVSIE 229
Cdd:NF033518 98 SGLNEK-RKGLLKLLDDILNGE-VSRVVVEHK-------DRLTRFgfeylealfKANGVEIVVVNEDEKSPE 160
|
|
| |
