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Conserved domains on  [gi|1469906294|ref|WP_117746800|]
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MULTISPECIES: carbohydrate ABC transporter permease [Collinsella]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 10003067)

carbohydrate ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of carbohydrate substrates including trehalose, lactose, arabinose, and maltodextrin

Gene Ontology:  GO:0042626|GO:0140359|GO:0008643|GO:0055085
PubMed:  25750732|24638992|30626703
TCDB:  3.A.1.1.-

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
6-281 3.33e-79

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 241.58  E-value: 3.33e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294   6 KRWWP-LFMLPTCLAFMIGFVIPFIQGFYLSFCQFIIIS-NAHFVGIENYVRALSDPQFATSFFFTVAFAFLSTVLINVI 83
Cdd:COG1175    16 RRLAAyLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGpPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVL 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  84 ALAIAQALTRKaLKGTNIFRTIFFMPNLIGGIVLGYIWQI-------LINCLLSNIGADLIA--LNSAAGFWGLIILTLW 154
Cdd:COG1175    96 GLLLALLLNRK-LRGRGFFRTLFFLPWVISPVVVALIWKWlfnpdygLLNALLGALGLEPINwlGDPSLALPAVIIVTVW 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294 155 QQVGYMMIIYIAGLQSIPSDYIEAAKVDGATAWQTFWKVKIPNLMPTITICLFLSITNGFKLFDQNLALTGGAPAHSTEM 234
Cdd:COG1175   175 KGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPGNSTTT 254

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1469906294 235 LALNIYNTFYSRAGIawqGIGQAKAVIFCILVVAISMIQLKATRSKE 281
Cdd:COG1175   255 LVLYIYQTAFQQFDF---GYASAIAVVLFLIILVLTLLQLRLLRRRE 298
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
6-281 3.33e-79

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 241.58  E-value: 3.33e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294   6 KRWWP-LFMLPTCLAFMIGFVIPFIQGFYLSFCQFIIIS-NAHFVGIENYVRALSDPQFATSFFFTVAFAFLSTVLINVI 83
Cdd:COG1175    16 RRLAAyLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGpPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVL 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  84 ALAIAQALTRKaLKGTNIFRTIFFMPNLIGGIVLGYIWQI-------LINCLLSNIGADLIA--LNSAAGFWGLIILTLW 154
Cdd:COG1175    96 GLLLALLLNRK-LRGRGFFRTLFFLPWVISPVVVALIWKWlfnpdygLLNALLGALGLEPINwlGDPSLALPAVIIVTVW 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294 155 QQVGYMMIIYIAGLQSIPSDYIEAAKVDGATAWQTFWKVKIPNLMPTITICLFLSITNGFKLFDQNLALTGGAPAHSTEM 234
Cdd:COG1175   175 KGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPGNSTTT 254

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1469906294 235 LALNIYNTFYSRAGIawqGIGQAKAVIFCILVVAISMIQLKATRSKE 281
Cdd:COG1175   255 LVLYIYQTAFQQFDF---GYASAIAVVLFLIILVLTLLQLRLLRRRE 298
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
11-280 3.32e-21

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 90.66  E-value: 3.32e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  11 LFMLPTCLAFMIGFVIPFIQGFYLSFCQFIIIS-NAHFVGIENYVRALSDPQFATSFFFTVAFAFLSTVLINVIALAIAq 89
Cdd:PRK10561    1 LLVAPQLIITVIFFIWPAGEALWYSLQSVDPFGfSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFA- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  90 ALTRKALKGTNIFRTIFFMPNLIGGIVLGYIWQILINC-------LLSNIGADL-IALNSAAGFWGLIILTLWQQVGYMM 161
Cdd:PRK10561   80 ALVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPgrglithFLAEFGYDWnHAQNSGQAMFLVVFASVWKQISYNF 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294 162 IIYIAGLQSIPSDYIEAAKVDGATAWQTFWKVKIPNLMPtitICLFLSITN----GFKLFDQNLALTGGAPAHSTEMLAL 237
Cdd:PRK10561  160 LFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAP---VSFFLLVVNlvyaFFDTFPVIDAATSGGPVQATTTLIY 236

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1469906294 238 NIYNTFYSRAGIAWQGigqAKAVIFCILVVAISMIQLKATRSK 280
Cdd:PRK10561  237 KIYREGFTGLDLSSSA---AQSVVLMFLVIVLTVVQFRYVESK 276
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 11-197 2.73e-12

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 66.63  E-value: 2.73e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  11 LFMLPTCLAFMIGFVIPFIQGFYLSFcqfiIISNAHFVGIENYVRALSDPQFATSFFFTVAFAFLSTVLINVIALAIAQA 90
Cdd:TIGR03262   5 LLLAGMILALLLFLLLPLLALLTKSV----YDSDGDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  91 LTRKALKGTNIFRTI----FFMPNLIGGIVLGYiwqilincLLSNIG--ADLIALNSAAGFWGLIILTLWQQVGYMMIIY 164
Cdd:TIGR03262  81 LTRSRIPGKGAFRLVallpLLAPSLLPAISLIY--------LFGNQGllKGLLGGFSIYGFWGIVIGEVFYTFPHALMIL 152

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1469906294 165 IAGLQSIPSDYIEAAKVDGATAWQTFWKVKIPN 197
Cdd:TIGR03262 153 VTALSLADGRLYEAARAMGASPWRTFFTVTLPG 185
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 66-228 7.18e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 62.68  E-value: 7.18e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  66 FFFTVAFAFLSTVLINVIALAIAQALTRKALKGTNIFRTIFFMPNLIGGIVLGYIWQILINCLLsnigadLIALNSAAGF 145
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLL------GWGILPGLGL 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294 146 WGLIILTLWQqVGYMMIIYIAGLQSIPSDYIEAAKVDGATAWQTFWKVKIPNLMPTITICLFLSITNGFKLFDQNLALTG 225
Cdd:cd06261    75 PALILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGG 153


                  ...
gi 1469906294 226 GAP 228
Cdd:cd06261   154 GEA 156
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 144-250 1.77e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 58.85  E-value: 1.77e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294 144 GFWGLIILTLWQQVGYMMIIYIAGLQSIPSDYIEAAKVDGATAWQTFWKVKIPNLMPTITICLFLSITNGFKLFDQNLAL 223
Cdd:pfam00528  51 GILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL 130

                          90       100
                  ....*....|....*....|....*..
gi 1469906294 224 TGGAPAHSTEMLALNIYNTFYSRAGIA 250
Cdd:pfam00528 131 GSWPGLGLLLIEAILGYDYPEIQGPVL 157
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
6-281 3.33e-79

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 241.58  E-value: 3.33e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294   6 KRWWP-LFMLPTCLAFMIGFVIPFIQGFYLSFCQFIIIS-NAHFVGIENYVRALSDPQFATSFFFTVAFAFLSTVLINVI 83
Cdd:COG1175    16 RRLAAyLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGpPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVL 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  84 ALAIAQALTRKaLKGTNIFRTIFFMPNLIGGIVLGYIWQI-------LINCLLSNIGADLIA--LNSAAGFWGLIILTLW 154
Cdd:COG1175    96 GLLLALLLNRK-LRGRGFFRTLFFLPWVISPVVVALIWKWlfnpdygLLNALLGALGLEPINwlGDPSLALPAVIIVTVW 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294 155 QQVGYMMIIYIAGLQSIPSDYIEAAKVDGATAWQTFWKVKIPNLMPTITICLFLSITNGFKLFDQNLALTGGAPAHSTEM 234
Cdd:COG1175   175 KGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPGNSTTT 254

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1469906294 235 LALNIYNTFYSRAGIawqGIGQAKAVIFCILVVAISMIQLKATRSKE 281
Cdd:COG1175   255 LVLYIYQTAFQQFDF---GYASAIAVVLFLIILVLTLLQLRLLRRRE 298
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 3-268 2.51e-29

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 112.88  E-value: 2.51e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294   3 KALKRWWPL--FMLPTCLAFMIGFVIPfIQGFYLSFCQFII---ISNAHFVGIENYVRALSDPQFATSFFFTVAFAFLST 77
Cdd:COG4209    21 KRLKRDWQLylMLLPGLIYLLIFSYLP-MYGIVIAFKDYNPfkgIFGSPWVGLKNFKFLFSSPDFWRVLRNTLLISLLKL 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  78 VLINVIALAIAQAL---TRKALKGTniFRTIFFMPNLIGGIVLGYIWQI-------LINCLLSNIGADLIA-LNSAAGFW 146
Cdd:COG4209   100 VFGFPLPIILALLLnelRSKRFKKT--VQTISYLPHFLSWVVVAGIVYQflspdtgLVNQLLRALGGEPINfLTEPKYFR 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294 147 GLIILT-LWQQVGYMMIIYIAGLQSIPSDYIEAAKVDGATAWQTFWKVKIPNLMPTITICLFLSITNGFKL-FDQNLALT 224
Cdd:COG4209   178 PIYVFSgIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPTIVILLILNIGNILNVgFEQIYLLY 257

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1469906294 225 GGAPAHSTEMLALNIYntfysRAGIAWQGIGQA------KAVIFCILVVA 268
Cdd:COG4209   258 NPLNYSTSDVIDTYVY-----RIGLQNGDYSYAtavglfKSVVGLILVLI 302
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 1-204 5.02e-25

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 100.99  E-value: 5.02e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294   1 MGKALKRWWP--LFMLPTCLAFMIGFVIPFIQGFYLSFCQFIIISNAHFV-GIENYVRALSDPQFATSFFFTVAFAFLST 77
Cdd:COG1176     1 MSAALRRRLRplLLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGfTLENYARLFTDPLYLKVLLRTLWIALLTT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  78 VLINVIALAIAQALTRKALKGTNIFRTIFFMPNLIGGIVLGYIWQIL------INCLLSNIGADLIALNSAAGFWGLIIL 151
Cdd:COG1176    81 LICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLlgrnglLNSLLLALGLIDEPLRLLYTEFAVVIG 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1469906294 152 TLWQQVGYMMIIYIAGLQSIPSDYIEAAKVDGATAWQTFWKVKIPNLMPTITI 204
Cdd:COG1176   161 LVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIA 213
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
11-280 3.32e-21

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 90.66  E-value: 3.32e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  11 LFMLPTCLAFMIGFVIPFIQGFYLSFCQFIIIS-NAHFVGIENYVRALSDPQFATSFFFTVAFAFLSTVLINVIALAIAq 89
Cdd:PRK10561    1 LLVAPQLIITVIFFIWPAGEALWYSLQSVDPFGfSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFA- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  90 ALTRKALKGTNIFRTIFFMPNLIGGIVLGYIWQILINC-------LLSNIGADL-IALNSAAGFWGLIILTLWQQVGYMM 161
Cdd:PRK10561   80 ALVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPgrglithFLAEFGYDWnHAQNSGQAMFLVVFASVWKQISYNF 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294 162 IIYIAGLQSIPSDYIEAAKVDGATAWQTFWKVKIPNLMPtitICLFLSITN----GFKLFDQNLALTGGAPAHSTEMLAL 237
Cdd:PRK10561  160 LFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAP---VSFFLLVVNlvyaFFDTFPVIDAATSGGPVQATTTLIY 236

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1469906294 238 NIYNTFYSRAGIAWQGigqAKAVIFCILVVAISMIQLKATRSK 280
Cdd:PRK10561  237 KIYREGFTGLDLSSSA---AQSVVLMFLVIVLTVVQFRYVESK 276
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
1-284 7.82e-20

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 89.06  E-value: 7.82e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294   1 MGKALKRWWPLFMLPTCLAFMIGFVIPFIQGFYLSFcqfiiisnahFVGIENYVRALSDPQFATSFFFTVAFAFLSTVLI 80
Cdd:COG1178     1 MSTRPRRRPRLLLLLLALLLALLVLLPLLALLLRAF----------TDGLANFWALLSDPYLWRALGNTLLLALLVTLLS 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  81 NVIALAIAQALTRKALKGTNIFRTIFFMPNLIGGIVLGYIWQILI--NCLLSNIGADL--IALNSAAGFWGLIILTLWQQ 156
Cdd:COG1178    71 LLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFgpNGLLNTLLRALfgLEPPDIYGLGGIILVLVLFN 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294 157 VGYMMIIYIAGLQSIPSDYIEAAKVDGATAWQTFWKVKIPNLMPTITICLFLSITNGFKLFDQNLALTGGAPahsteMLA 236
Cdd:COG1178   151 YPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGGGYT-----TLT 225

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1469906294 237 LNIYNTFYSRAGIawqGIGQAKAVIFCILVVAISMIQLKATRSKEVQQ 284
Cdd:COG1178   226 TAIYQAWLGDFDL---GAAAALALVLLLLVLLLLLLERRLRRRRRYAT 270
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 6-214 1.24e-18

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 82.85  E-value: 1.24e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294   6 KRWWPLFMLPTCLAFMIGFVIPFIQGFYLSF--CQFIIISNAHFvGIENYVRALSDPQFATSFFFTVAFAFLSTVLINVI 83
Cdd:COG1177     2 SRLGRLLLRLFLALVLLFLYLPILVLVLYSFndSWFLTFPPEGF-TLRWYAELFSDPRLLDALLNSLLIALLSTLLATVL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  84 ALAIAQALTRKALKGTNIFRTIFFMPNLIGGIVLGyiwqILINCLLSNIGADLialnsaaGFWGLIILTLWQQVGYMMII 163
Cdd:COG1177    81 GTPAALALARYRFRGRRLLLALLLLPLVVPGIVLG----VALLLLFSALGLSG-------GLWGLILAHVVFTLPFVVLV 149

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1469906294 164 YIAGLQSIPSDYIEAAKVDGATAWQTFWKVKIPNLMPTITICLFLSITNGF 214
Cdd:COG1177   150 VLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSF 200
malF PRK10999
maltose ABC transporter permease MalF;
47-280 2.11e-18

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 84.63  E-value: 2.11e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  47 FVGIENYVRALSDPQ----FATSFFFTVAFAFLSTVLINVIALAIAQALTRKALKGTNIFRTIFFMPNLIGGIVLGYIWQ 122
Cdd:PRK10999  264 TIGWKNFTRVFTDEGiqkpFIAIFIWTVVFSLLTVVLTVAVGMVLACLVQWEALKGKAVYRVLLILPYAVPSFISILIFK 343

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294 123 ILINcllSNIGADLIALNSAAGF---W---------GLIILTLWQQVGYMMIIYIAGLQSIPSDYIEAAKVDGATAWQTF 190
Cdd:PRK10999  344 GLFN---QSFGEINMMLSALFGIkpaWfsdptlaktMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNF 420

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294 191 WKVKIPNLMPTITICLFLSITNGFKLFDQNLALTGGAP--------AHSTEMLALNIYNtfysragIAWQGIGQ------ 256
Cdd:PRK10999  421 FKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPdmigtttpAGYTDLLVSYTYR-------IAFEGGGGqdfgla 493

                         250       260
                  ....*....|....*....|....*
gi 1469906294 257 -AKAVIFCILVVAISMIQLKATRSK 280
Cdd:PRK10999  494 aAIATLIFLLVGALAILNLKATKMK 518
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 50-207 1.79e-15

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 74.36  E-value: 1.79e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  50 IENYVRALSDPQFATSFFFTVAFAFLSTVLINVIALAIAQALTRKALKGTNIFRTIFFMPNLIGGIVLG---YIwqilin 126
Cdd:COG0395    60 LENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLiplYL------ 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294 127 cLLSNIGAdliaLNSaagFWGLIILTLWQQVGYMMIIYIAGLQSIPSDYIEAAKVDGATAWQTFWKVKIPNLMPTI-TIC 205
Cdd:COG0395   134 -LFRQLGL----LNT---YWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALaTVA 205


                  ..
gi 1469906294 206 LF 207
Cdd:COG0395   206 IF 207
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
3-209 1.78e-14

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 72.89  E-value: 1.78e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294   3 KALKRWWPLFMLPTCLAFMIGFVIPFIQGFYLSFCQFIiisnAHFVGIENYVRALSDPQFATSFFFTVAFAFLSTVLINV 82
Cdd:COG1178   281 VKLGRWRWLALALCLLLVLLGLLLPLLALLLWSLTKAL----DDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVL 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  83 IALAIAQALTRKALKGTNIFRTIFFMPNLIGGIVL--GYIWqilincllsnIGADLIALNSAAGFWGLIILTLWQQVGYM 160
Cdd:COG1178   357 LALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLglGLLL----------LFNRPLPLLLYGTLAILVLAYVVRFLPFA 426

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1469906294 161 MIIYIAGLQSIPSDYIEAAKVDGATAWQTFWKVKIPNLMPTITICLFLS 209
Cdd:COG1178   427 LRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLV 475
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 1-202 6.94e-13

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 67.08  E-value: 6.94e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294   1 MGKALKRWWPLFMLPTCLAFMIGFVIPFIQgfylsfcqfiIISNAHFVGIENYVRALSDPQFATSFFFTVAFAFLSTVLI 80
Cdd:COG0555     1 MSRRVLPGFGLTLGLTLLYLSLIVLLPLAA----------LVLKAAGLGWAEFWAVLTSPRVLAALKLSLGTALIAALIN 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  81 NVIALAIAQALTRKALKGTNIFRTI----FFMPNLIGGIVLGYIW--QILINCLLSNIGadliaLNSAAGFWGLIILTLW 154
Cdd:COG0555    71 LVFGLPLAWVLVRYRFPGKRLVDALvdlpFALPTAVAGIALLLLFgpNGWLGQLLAPLG-----IKVAFTPLGIVLAQTF 145

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1469906294 155 QQVGYMMIIYIAGLQSIPSDYIEAAKVDGATAWQTFWKVKIPNLMPTI 202
Cdd:COG0555   146 VSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPAL 193
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 11-197 2.73e-12

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 66.63  E-value: 2.73e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  11 LFMLPTCLAFMIGFVIPFIQGFYLSFcqfiIISNAHFVGIENYVRALSDPQFATSFFFTVAFAFLSTVLINVIALAIAQA 90
Cdd:TIGR03262   5 LLLAGMILALLLFLLLPLLALLTKSV----YDSDGDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  91 LTRKALKGTNIFRTI----FFMPNLIGGIVLGYiwqilincLLSNIG--ADLIALNSAAGFWGLIILTLWQQVGYMMIIY 164
Cdd:TIGR03262  81 LTRSRIPGKGAFRLVallpLLAPSLLPAISLIY--------LFGNQGllKGLLGGFSIYGFWGIVIGEVFYTFPHALMIL 152

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1469906294 165 IAGLQSIPSDYIEAAKVDGATAWQTFWKVKIPN 197
Cdd:TIGR03262 153 VTALSLADGRLYEAARAMGASPWRTFFTVTLPG 185
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 66-228 7.18e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 62.68  E-value: 7.18e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  66 FFFTVAFAFLSTVLINVIALAIAQALTRKALKGTNIFRTIFFMPNLIGGIVLGYIWQILINCLLsnigadLIALNSAAGF 145
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLL------GWGILPGLGL 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294 146 WGLIILTLWQqVGYMMIIYIAGLQSIPSDYIEAAKVDGATAWQTFWKVKIPNLMPTITICLFLSITNGFKLFDQNLALTG 225
Cdd:cd06261    75 PALILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGG 153


                  ...
gi 1469906294 226 GAP 228
Cdd:cd06261   154 GEA 156
COG4132 COG4132
ABC-type uncharacterized transport system, permease component [General function prediction ...
 2-226 6.22e-11

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443307 [Multi-domain]  Cd Length: 286  Bit Score: 61.36  E-value: 6.22e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294   2 GKALKRWWPLFMLPTCLAFMIGF-VIPFIQGFYLSFcqfiiISNAHFVGIENYvRALSDPQFATSFFFTVAFAFLSTVLI 80
Cdd:COG4132     6 RRRRRKWLAWLGLLPFFLFVLLFlLLPTVWVVIGAF-----QDDDGGFTLANY-AELTSPFYLQAFWNSIWLSLASALIG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  81 NVIALAIAQALTRKalkGTNIFRTIFF----MPNLIGGIVLGYIWQI------LINCLLSNIGADLIALNSAAGFWGLII 150
Cdd:COG4132    80 AVIGLLLAYALRRG---GPGWLRRAVLafsgVASNFAGVPLAFAFIAtlgrngLVTLLLKQLGIDLYDGFNLYSFWGLIL 156

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1469906294 151 LTLWQQVGYMMIIYIAGLQSIPSDYIEAAKVDGATAWQTFWKVKIPNLMPTITICLFLSITNGFKLFDQNLALTGG 226
Cdd:COG4132   157 VYLYFQIPLMVLLLYPALDGLRREWREAAALLGASRWQYWRRVALPVLAPSLLGTFLLLFANAFGAYATAYALTGG 232
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 144-250 1.77e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 58.85  E-value: 1.77e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294 144 GFWGLIILTLWQQVGYMMIIYIAGLQSIPSDYIEAAKVDGATAWQTFWKVKIPNLMPTITICLFLSITNGFKLFDQNLAL 223
Cdd:pfam00528  51 GILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL 130

                          90       100
                  ....*....|....*....|....*..
gi 1469906294 224 TGGAPAHSTEMLALNIYNTFYSRAGIA 250
Cdd:pfam00528 131 GSWPGLGLLLIEAILGYDYPEIQGPVL 157
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 50-214 1.43e-08

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 54.39  E-value: 1.43e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  50 IENYVRALSDPQFATSFFFTVAFAFLSTVLINVIALAIAQALTRKALKGTNIFRTIFFMPNLIGGIVLgyiwQILINCLL 129
Cdd:COG3833    59 LENYKKLFTETPFLRWFLNSLIVAVVTAIISVFLAALAAYAFSRFRFKGRKAGLLALLLLQMFPAFLA----LVALYLLL 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294 130 SNIGAdliaLNSaagFWGLIILTL--------WQQVGYMmiiyiaglQSIPSDYIEAAKVDGATAWQTFWKVKIPNLMPT 201
Cdd:COG3833   135 SALGL----LNT---LLGLILVYLggaipfntWLMKGYF--------DTIPKELDEAAKIDGASHFQIFFRIILPLAKPI 199

                         170
                  ....*....|...
gi 1469906294 202 ITICLFLSITNGF 214
Cdd:COG3833   200 LAVVALLSFIGPW 212
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 7-211 1.75e-08

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 54.28  E-value: 1.75e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294   7 RWWPLFMLPTCLAFMIGFVI---PFIQGFYLSFCQfiiisnahfvGIENYVRALSDPQFATSFFFTVAFAFLSTVLINVI 83
Cdd:TIGR00969  10 RFIKWGKLSLGIALLYVFLIlilPVAALFVQAFSK----------GLGQFWQNATDPIAVSAYNLTLLMALIAVPLNGVF 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  84 ALAIAQALTRKALKGTNIFRTI----FFMPNLIGGIVLGYIW--QILINCLLSNIGADLIAlnsaaGFWGLIILTLWQQV 157
Cdd:TIGR00969  80 GLLIAWVLTRYQFPGRKLLDALidlpFALSPVVAGLTLALLYgsNGWLGSWLASFGIQIIF-----TWPGMALAMIFVSL 154

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1469906294 158 GYMMIIYIAGLQSIPSDYIEAAKVDGATAWQTFWKVKIPNLMPTITICLFLSIT 211
Cdd:TIGR00969 155 PFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFA 208
permease_CysW TIGR02140
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ...
 41-198 5.51e-06

sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 162725  Cd Length: 261  Bit Score: 46.61  E-value: 5.51e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  41 IISNAHFVGIENYVRALSDPQFATSFFFTVAFAFLSTVLINVIALAIAQALTRKALKGTNIFRTIFFMPNLIGGIVLGYI 120
Cdd:TIGR02140  24 IFQEAFEKGFGVFFAAISDPDALSAIKLTLLVALIVVPLNTVFGVCAAWVLTRFQFPGKRLLLTIIDLPFSVSPVVAGLI 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294 121 WqILINCLLSNIGADLIALNSAAGFW--GLIILTLWQQVGYMMIIYIAGLQSIPSDYIEAAKVDGATAWQTFWKVKIPNL 198
Cdd:TIGR02140 104 F-VLLYGSQGWLGPWLEDLDIKIIFSlpGIVLATMFVTCPFVARELIPVMEEQGTEQEEAALTLGASWWQTFWRVTLPNI 182
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 58-210 1.95e-05

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 45.63  E-value: 1.95e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  58 SDPQFATSFFFTVAFAFLSTVLINVIALAIAQALTRKALKGTNIFRTIFFMPNLIGGIVLGYIWQILincllsnigadLI 137
Cdd:COG4135   350 AAPGLLEPLGNTLLLALASALIALVLVLACLEAEARRGRRPGRRALWLLYLPLLVPQIAFLFGLQVL-----------LL 418

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1469906294 138 ALNSAAGFWGLIILTLWQQVGYMMIIYIAGLQSIPSDYIEAAKVDGATAWQTFWKVKIPNLMPTITICLFLSI 210
Cdd:COG4135   419 RLGLDGTWLAVIWAHLVFVLPYVFLSLAGPWRALDPRYAQVAASLGASPWRVFWRVKLPLLLRPILTAAAVGF 491
ProW COG4176
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 167-202 2.57e-05

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443335  Cd Length: 275  Bit Score: 44.70  E-value: 2.57e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1469906294 167 GLQSIPSDYIEAAKVDGATAWQTFWKVKIPNLMPTI 202
Cdd:COG4176   176 GIRQVPKELVEAADAFGATPWQLLFKVQLPLALPTI 211
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 165-229 3.13e-05

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 43.89  E-value: 3.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294 165 IAGLQSIPSDYIEAAKVDGATAWQTFWKVKIPNLMPTI---------------TICLFLS-------ITNGFKLFDQNLA 222
Cdd:COG1174   102 YTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVIlagirtaavqnigtaTLAALIGagglgdlIFDGLQLNNTALI 181


                  ....*..
gi 1469906294 223 LTGGAPA 229
Cdd:COG1174   182 LAGAILV 188
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 165-215 3.43e-05

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 44.37  E-value: 3.43e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1469906294 165 IAGLQSIPSDYIEAAKVDGATAWQTFWKVKIPNLMPTITICLFLSITNGFK 215
Cdd:COG0600   145 AAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAWI 195
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 33-279 3.84e-05

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 44.24  E-value: 3.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  33 YLSFCQFI----IISNAHFVGIENYVRALSDPQFATSFFFTVAFAFLSTVLINVIALAIAQALTRKALKGTNIFRTI--- 105
Cdd:TIGR02139  15 YLSLIVLLplaaLFLKASQLGWAGFWQIITEPRVLAAYKLSFGTALIAALINAVFGTLLAWVLVRYRFPGKRIVDALvdl 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294 106 -FFMPNLIGGIVL-------GYIWQIL----INCLLSNIGAdLIALNsaagFWGL-IILTLWQQVgymmiiyiagLQSIP 172
Cdd:TIGR02139  95 pFALPTAVAGIALatlyspnGWIGSFLaplgIKIAFTPLGI-VIALV----FVSLpFVVRTVQPV----------LEEIE 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294 173 SDYIEAAKVDGATAWQTFWKVKIPNLMPTITICLFLSITNGFKLFDQNLALTGGAPaHSTEMLALNIYNTF--YSRAGIA 250
Cdd:TIGR02139 160 KELEEAAASLGASRWQTFWRVILPALLPALLTGFALAFARAVGEYGSVIFIAGNLP-MKTEIAPLLIFQKLeqYDYAGAT 238

                         250       260
                  ....*....|....*....|....*....
gi 1469906294 251 wqGIGQAKAVIFCILVVAISMIQLKATRS 279
Cdd:TIGR02139 239 --AIASVMLIISFVILLFINLLQWWALRY 265
cysT CHL00187
sulfate transport protein; Provisional
 39-209 2.01e-04

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 41.92  E-value: 2.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  39 FIIISNAHFVGIENYVRALSDPQFATSFFFTVAFAFLSTVLINVIALAIAQALTRKALKGTNIFRTI----FFMPNLIGG 114
Cdd:CHL00187   30 LALLIKASQQPWSDFLQKATEPIALSAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAvdlpFALPTSVAG 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294 115 IVLGYIWQI--LINCLLSNIGADLialnsAAGFWGLIILTLWQQVGYMMIIYIAGLQSIPSDYIEAAKVDGATAWQTFWK 192
Cdd:CHL00187  110 LTLATVYGDngWIGHLLSHLGIQI-----VFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWK 184

                         170
                  ....*....|....*..
gi 1469906294 193 VKIPNLMPTITICLFLS 209
Cdd:CHL00187  185 VIFPPLIPALLTGLALT 201
COG4986 COG4986
ABC-type anion transport system, duplicated permease component [Inorganic ion transport and ...
 168-200 7.91e-04

ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism];


Pssm-ID: 444010 [Multi-domain]  Cd Length: 576  Bit Score: 40.60  E-value: 7.91e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1469906294 168 LQSIPSDYIEAAKVDGATAWQTFWKVKIPNLMP 200
Cdd:COG4986   156 LRTVPRDLDEAARIFRLSGWQRFWRLELPFAMP 188
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
53-278 1.48e-03

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 39.35  E-value: 1.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  53 YVRALSDPQFATSFFFTVAFAFLSTVLINVIALAIAQALTRKALKGTNIFRTI----FFMPNLIGGIVLGyiwqilincl 128
Cdd:PRK10971   47 YWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALmdlpFALPTAVAGLTLA---------- 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294 129 lsnigadliALNSAAGFWGLIILTLWQQVGYMMI-IYIA-GLQSIP--------------SDYIEAAKVDGATAWQTFWK 192
Cdd:PRK10971  117 ---------SLFSVNGWYGEWLAKFDIKVTYTWLgIAVAmAFTSIPfvvrtvqpvleelgPEYEEAAETLGATRWQSFRK 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294 193 VKIPNLMPTITICLFLSITNGFKLFDQNLALTGGApAHSTEMLALNIYNTFYSRAGIAWQGIGQAKAVIFCILVVAISMI 272
Cdd:PRK10971  188 VVLPELSPALLAGVALSFTRSLGEFGAVIFIAGNI-AWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFSINTL 266


                  ....*.
gi 1469906294 273 QLKATR 278
Cdd:PRK10971  267 QSRFGR 272
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
165-202 5.19e-03

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 37.76  E-value: 5.19e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1469906294 165 IAGLQSIPSDYIEAAKVDGATAWQTFWKVKIPNLMPTI 202
Cdd:PRK10952  228 ILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTI 265
malG PRK10998
maltose ABC transporter permease MalG;
69-209 6.49e-03

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 37.38  E-value: 6.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  69 TVAFAFLSTVLINVIALAIAQALTRKALKGTNIFRT---IFFMPNLIGGIVLGYIwqilincLLSNIGADL--IALNSAA 143
Cdd:PRK10998   88 SVKVAGITAIGIVALSTTCAYAFARMRFKGKATLLKgmlIFQMFPAVLSLVALYA-------LFDRLGQYIpfIGLNTHG 160

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294 144 G----FWGLIILTLWQQVGYmmiiyiagLQSIPSDYIEAAKVDGATAWQTFWKVKIPNLMPTITICLFLS 209
Cdd:PRK10998  161 GvifaYLGGIALHVWTIKGY--------FETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILS 222
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 60-196 7.92e-03

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 36.98  E-value: 7.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469906294  60 PQFATSFFFTVAFAFLSTVLINVIALAIAQALTRKalkgtnifrtiffmPNLIGGIVLGYIWQI-----LINCLLSNIGA 134
Cdd:COG0765    13 PLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSP--------------NPVLRWLATAYVEFFrgtplLVQLFFIYFGL 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1469906294 135 DLIALNSAAGFWGLIILTLWQqVGYMMIIYIAGLQSIPSDYIEAAKVDGATAWQTFWKVKIP 196
Cdd:COG0765    79 PLLGIDLSPFVAAVIALTLNS-AAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILP 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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