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Conserved domains on  [gi|1717878578|ref|WP_144447177|]
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lateral flagellin LafA [Photobacterium leiognathi]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
lat_flg_LafA_2 super family cl41643
lateral flagellin LafA;
1-289 9.59e-120

lateral flagellin LafA;


The actual alignment was detected with superfamily member NF038071:

Pssm-ID: 468331 [Multi-domain]  Cd Length: 283  Bit Score: 344.51  E-value: 9.59e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578   1 MALSMHTNYASLVTQNTLNNTSNLLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEG 80
Cdd:NF038071    1 MGLSIHTNYASLVTQNQLNSTNKMLGTAMQRLGTGLRINSAADDAAGLQMATRLQAQSNGQKVGMRNAQDAISMMQTAEG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  81 AMDEMTNIVYRMNDLATQASNGTVSANDRVALDAEFQQLGEELANVMASTSFGGQDILTDAGSFGAgAVNFQIGTQSGDQ 160
Cdd:NF038071   81 AMDEMTNITQRMKDLATQSANGTASAADRAAMDAEFKELSAELDNIMDNTTFGGQKLLKDGGKFEA-AVTFQIGGSSAEK 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 161 LAVDVSTEINAVNATI-GLSGGLALGDLTTEGTAQAALTTLtgangeAGLLKEIGDARSALGANINRLDHTITNLGNMVE 239
Cdd:NF038071  160 LDVDASANVQKVNAEVvGTEKDVTAGIGTQAKAASAAITKL------DTLLGDIGAVRSQFGANINRLEHTVNNLSNMKE 233

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1717878578 240 NVSAAKGRIVDADFAVESSSMTKNQMLMQAGTTVLSQTNQLPGMAMSLLR 289
Cdd:NF038071  234 NTDMAKGRIMDADFAAESTNMTKNQMLMQAGMSVLSNSNQMTGMVTSLLR 283
 
Name Accession Description Interval E-value
lat_flg_LafA_2 NF038071
lateral flagellin LafA;
1-289 9.59e-120

lateral flagellin LafA;


Pssm-ID: 468331 [Multi-domain]  Cd Length: 283  Bit Score: 344.51  E-value: 9.59e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578   1 MALSMHTNYASLVTQNTLNNTSNLLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEG 80
Cdd:NF038071    1 MGLSIHTNYASLVTQNQLNSTNKMLGTAMQRLGTGLRINSAADDAAGLQMATRLQAQSNGQKVGMRNAQDAISMMQTAEG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  81 AMDEMTNIVYRMNDLATQASNGTVSANDRVALDAEFQQLGEELANVMASTSFGGQDILTDAGSFGAgAVNFQIGTQSGDQ 160
Cdd:NF038071   81 AMDEMTNITQRMKDLATQSANGTASAADRAAMDAEFKELSAELDNIMDNTTFGGQKLLKDGGKFEA-AVTFQIGGSSAEK 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 161 LAVDVSTEINAVNATI-GLSGGLALGDLTTEGTAQAALTTLtgangeAGLLKEIGDARSALGANINRLDHTITNLGNMVE 239
Cdd:NF038071  160 LDVDASANVQKVNAEVvGTEKDVTAGIGTQAKAASAAITKL------DTLLGDIGAVRSQFGANINRLEHTVNNLSNMKE 233

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1717878578 240 NVSAAKGRIVDADFAVESSSMTKNQMLMQAGTTVLSQTNQLPGMAMSLLR 289
Cdd:NF038071  234 NTDMAKGRIMDADFAAESTNMTKNQMLMQAGMSVLSNSNQMTGMVTSLLR 283
PRK08869 PRK08869
polar flagellin E;
2-289 1.33e-72

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 227.51  E-value: 1.33e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578   2 ALSMHTNYASLVTQNTLNNTSNLLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEGA 81
Cdd:PRK08869    1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  82 MDEMTNIVYRMNDLATQASNGTVSANDRVALDAEFQQLGEELANVMASTSFGGQDILTdaGSFgaGAVNFQIGTQSGDQL 161
Cdd:PRK08869   81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLN--GSF--GTKSFQIGANSGEAV 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 162 AVD-------------------------------------------------------------VSTEINA--------- 171
Cdd:PRK08869  157 SLDlksmrsdakimggvsydaeggadkdwtvgagntdlnvsfddkggetqaitinakagddieeLATYINGqtdgvgasv 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 172 --------------VNATIGLSGGLALG--------------DLTTEGTAQAALTTLTGAngeaglLKEIGDARSALGAN 223
Cdd:PRK08869  237 sedgklqlfaagqkVSGGVSFSGGLAAElglgnatavtvddlDISTVGGAQQAVAVIDAA------LKYVDSHRADLGAF 310

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1717878578 224 INRLDHTITNLGNMVENVSAAKGRIVDADFAVESSSMTKNQMLMQAGTTVLSQTNQLPGMAMSLLR 289
Cdd:PRK08869  311 QNRFTHAINNLQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 376
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
3-289 1.04e-55

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 180.06  E-value: 1.04e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578   3 LSMHTNYASLVTQNTLNNTSNLLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEGAM 82
Cdd:COG1344     1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  83 DEMTNIVYRMNDLATQASNGTVSANDRVALDAEFQQLGEELANVMASTSFGGQDILtdaGSFGAGAVNFQIGTQSGDqla 162
Cdd:COG1344    81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLF---AGTATDTPPFQVDYQGDA--- 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 163 vdvsteinavnatiglsgglalgdltteGTAQAALTTLTGAngeaglLKEIGDARSALGANINRLDHTITNLGNMVENVS 242
Cdd:COG1344   155 ----------------------------GQRTAALGALDAA------LDNVSSARAELGARQNRLESAINNLSDLSENLT 200

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1717878578 243 AAKGRIVDADFAVESSSMTKNQMLMQAGTTVLSQTNQLPgmAMSLLR 289
Cdd:COG1344   201 AALSRLEDADMAEAITRLTKLQTLLQAALAALAQANQLS--LLDLLR 245
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 5-138 4.46e-36

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 125.92  E-value: 4.46e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578   5 MHTNYASLVTQNTLNNTSNLLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEGAMDE 84
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1717878578  85 MTNIVYRMNDLATQASNGTVSANDRVALDAEFQQLGEELANVMASTSFGGQDIL 138
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLL 134
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 10-280 1.24e-21

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 92.03  E-value: 1.24e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  10 ASLVTQNTLNNTSNLLNTaMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEGAMDEMTNIV 89
Cdd:TIGR02550   8 YNNSLNSITNNQSRLAKL-QQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSSVGDVL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  90 YRMNDLATQASNGTVSANDRVALDAEFQQLGEELANVMASTS------FGGQDILTDAGSFGAGAVNFQIGTQSGDQLAV 163
Cdd:TIGR02550  87 QRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDgngryiFSGTKTDTPPFSEDEGGEVTYNGDGGQRKVQV 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 164 DVST--EINAVNATIGLSGGLALGDLT-TEGTAQAALTTLTGANGEAGLLKEIG--------------DARSALGANINR 226
Cdd:TIGR02550 167 ASNRsmPIGHPGDKVFMSIPNNDKSVFsTGDDLIDALKKLEDALSSGDAKAALSaslndldkaldnvlSARAEVGARLNR 246

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1717878578 227 LDHTITNLGNMVENVSAAKGRIVDADFAVESSSMTKNQMLMQAGTTVLSQTNQL 280
Cdd:TIGR02550 247 LENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQL 300
 
Name Accession Description Interval E-value
lat_flg_LafA_2 NF038071
lateral flagellin LafA;
1-289 9.59e-120

lateral flagellin LafA;


Pssm-ID: 468331 [Multi-domain]  Cd Length: 283  Bit Score: 344.51  E-value: 9.59e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578   1 MALSMHTNYASLVTQNTLNNTSNLLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEG 80
Cdd:NF038071    1 MGLSIHTNYASLVTQNQLNSTNKMLGTAMQRLGTGLRINSAADDAAGLQMATRLQAQSNGQKVGMRNAQDAISMMQTAEG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  81 AMDEMTNIVYRMNDLATQASNGTVSANDRVALDAEFQQLGEELANVMASTSFGGQDILTDAGSFGAgAVNFQIGTQSGDQ 160
Cdd:NF038071   81 AMDEMTNITQRMKDLATQSANGTASAADRAAMDAEFKELSAELDNIMDNTTFGGQKLLKDGGKFEA-AVTFQIGGSSAEK 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 161 LAVDVSTEINAVNATI-GLSGGLALGDLTTEGTAQAALTTLtgangeAGLLKEIGDARSALGANINRLDHTITNLGNMVE 239
Cdd:NF038071  160 LDVDASANVQKVNAEVvGTEKDVTAGIGTQAKAASAAITKL------DTLLGDIGAVRSQFGANINRLEHTVNNLSNMKE 233

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1717878578 240 NVSAAKGRIVDADFAVESSSMTKNQMLMQAGTTVLSQTNQLPGMAMSLLR 289
Cdd:NF038071  234 NTDMAKGRIMDADFAAESTNMTKNQMLMQAGMSVLSNSNQMTGMVTSLLR 283
PRK08869 PRK08869
polar flagellin E;
2-289 1.33e-72

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 227.51  E-value: 1.33e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578   2 ALSMHTNYASLVTQNTLNNTSNLLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEGA 81
Cdd:PRK08869    1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  82 MDEMTNIVYRMNDLATQASNGTVSANDRVALDAEFQQLGEELANVMASTSFGGQDILTdaGSFgaGAVNFQIGTQSGDQL 161
Cdd:PRK08869   81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLN--GSF--GTKSFQIGANSGEAV 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 162 AVD-------------------------------------------------------------VSTEINA--------- 171
Cdd:PRK08869  157 SLDlksmrsdakimggvsydaeggadkdwtvgagntdlnvsfddkggetqaitinakagddieeLATYINGqtdgvgasv 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 172 --------------VNATIGLSGGLALG--------------DLTTEGTAQAALTTLTGAngeaglLKEIGDARSALGAN 223
Cdd:PRK08869  237 sedgklqlfaagqkVSGGVSFSGGLAAElglgnatavtvddlDISTVGGAQQAVAVIDAA------LKYVDSHRADLGAF 310

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1717878578 224 INRLDHTITNLGNMVENVSAAKGRIVDADFAVESSSMTKNQMLMQAGTTVLSQTNQLPGMAMSLLR 289
Cdd:PRK08869  311 QNRFTHAINNLQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 376
PRK12802 PRK12802
flagellin; Provisional
 1-288 9.97e-65

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 204.34  E-value: 9.97e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578   1 MALSMHTNYASLVTQNTLNNTSNLLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEG 80
Cdd:PRK12802    1 MALTVNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  81 AMDEMTNIVYRMNDLATQASNGTVSANDRVALDAEFQQLGEELANVMASTSFGGQDILTDAgsfgAGAVNFQIGTQSGDQ 160
Cdd:PRK12802   81 ALQESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLDGS----AGTMTFQVGANTGQS 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 161 LAVDVSTEINAVNATIGLSGGLAL---GDLTTEGTAQAALTTLTGAngeaglLKEIGDARSALGANINRLDHTITNLGNM 237
Cdd:PRK12802  157 NQITFGLSASFDATGLGVGSGTLItgaDSAAAETNAQAAITAIDAA------LQTINTTRADLGAAQNRLQSTISNLQNI 230

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1717878578 238 VENVSAAKGRIVDADFAVESSSMTKNQMLMQAGTTVLSQTNQLPGMAMSLL 288
Cdd:PRK12802  231 NENASAARGRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVLKLL 281
PRK06819 PRK06819
FliC/FljB family flagellin;
1-289 6.49e-59

FliC/FljB family flagellin;


Pssm-ID: 235867 [Multi-domain]  Cd Length: 376  Bit Score: 192.30  E-value: 6.49e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578   1 MALSMHTNYASLVTQNTLNNTSNLLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEG 80
Cdd:PRK06819    1 MAAVINTNSLSLLTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISIAQTTEG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  81 AMDEMTNIVYRMNDLATQASNGTVSANDRVALDAEFQQLGEELANVMASTSFGGQDILTDAGSfgagaVNFQIGTQSGDQ 160
Cdd:PRK06819   81 ALNEINNNLQRVRELTVQAQNGSNSSSDLDSIQDEISQRLAEIDRVSDQTQFNGVKVLAEDTT-----MSIQVGANDGET 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 161 LAVD----------------------------VSTEINAVNATIGLSGGLALGDLtTEGTAQAALTTLTGANGEAGL--- 209
Cdd:PRK06819  156 IDINlqkidskslglgsfsvsgvsgaltsltfTDTALDTSVTGVTTTTALDFSDI-STFAKGATVHGIGDVGTDGAYadg 234

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 210 --------------------------------------------------------------LKEIGDARSALGANINRL 227
Cdd:PRK06819  235 yvirttdgkqykgevdatngkvtfaddangdpitdatkleaaaqfspagkataspletlddaLKQVDGLRSSLGAVQNRF 314

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1717878578 228 DHTITNLGNMVENVSAAKGRIVDADFAVESSSMTKNQMLMQAGTTVLSQTNQLPGMAMSLLR 289
Cdd:PRK06819  315 ESTVTNLNNTVTNLSSARSRIEDADYATEVSNMSRAQILQQAGTSVLAQANQVPQTVLSLLR 376
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
3-289 1.04e-55

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 180.06  E-value: 1.04e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578   3 LSMHTNYASLVTQNTLNNTSNLLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEGAM 82
Cdd:COG1344     1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  83 DEMTNIVYRMNDLATQASNGTVSANDRVALDAEFQQLGEELANVMASTSFGGQDILtdaGSFGAGAVNFQIGTQSGDqla 162
Cdd:COG1344    81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLF---AGTATDTPPFQVDYQGDA--- 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 163 vdvsteinavnatiglsgglalgdltteGTAQAALTTLTGAngeaglLKEIGDARSALGANINRLDHTITNLGNMVENVS 242
Cdd:COG1344   155 ----------------------------GQRTAALGALDAA------LDNVSSARAELGARQNRLESAINNLSDLSENLT 200

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1717878578 243 AAKGRIVDADFAVESSSMTKNQMLMQAGTTVLSQTNQLPgmAMSLLR 289
Cdd:COG1344   201 AALSRLEDADMAEAITRLTKLQTLLQAALAALAQANQLS--LLDLLR 245
PRK12807 PRK12807
flagellin; Provisional
 3-289 2.10e-52

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 173.08  E-value: 2.10e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578   3 LSMHTNYASLVTQNTLNNTSNLLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEGAM 82
Cdd:PRK12807    1 MRINTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKASQNTQDGMSLIRTAESAM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  83 DEMTNIVYRMNDLATQASNGTVSANDRVALDAEFQQLGEELANVMASTSFGGQDILTDAGSFGAGAVNF---QIGTQSGD 159
Cdd:PRK12807   81 NSVSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLLAGTGAVTIGSTSIsgaEISIETLD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 160 QLAVDVSTEI--NAVNAT-IGLSGGLALGDLTTEGTAQAALTTLTGAngeaglLKEIGDARSALGANINRLDHTITNLGN 236
Cdd:PRK12807  161 SSATNQQITIklANTTAEkLGIDATTSNISISGAASALAAISALNTA------LNTVAGNRATLGATLNRLDRNVENLNN 234

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1717878578 237 MVENVSAAKGRIVDADFAVESSSMTKNQMLMQAGTTVLSQTNQLPGMAMSLLR 289
Cdd:PRK12807  235 QATNMASAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLLQ 287
PRK12804 PRK12804
flagellin; Provisional
 8-289 6.04e-50

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 167.10  E-value: 6.04e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578   8 NYASLVTQNTLNNTSNLLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEGAMDEMTN 87
Cdd:PRK12804    6 NIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGALTETHS 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  88 IVYRMNDLATQASN-GTVSANDRVALDAEFQQLGEELANVMASTSFGGQDIL-----TDAGSFGAGAVNFQIGTQSGDQL 161
Cdd:PRK12804   86 ILQRVRELVVQAGNtGTQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKLLdgtfkPAAPAAGTKSLTFQIGANAAQQL 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 162 AVDV----STEINAVNATIGLSGGLALGDLTTEGTAQAALTTLTGANGEA----GLLKEIGDARSALGANINRLDHTITN 233
Cdd:PRK12804  166 SVNIeamsADALGVKDTDGTLVTGKSVSDIDVTKFANAAAAADGGFDDQLkivdGAIKQVSDQRSKLGAVQNRLEHTINN 245

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1717878578 234 LGNMVENVSAAKGRIVDADFAVESSSMTKNQMLMQAGTTVLSQTNQLPGMAMSLLR 289
Cdd:PRK12804  246 LGASGENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNVLQLLR 301
PRK12805 PRK12805
FliC/FljB family flagellin;
3-288 2.71e-37

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 133.84  E-value: 2.71e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578   3 LSMHTNYASLVTQNTLNNTSNLLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEGAM 82
Cdd:PRK12805    1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  83 DEMTNIVYRMNDLATQASNGTVSANDRVALDAEFQQLGEELANVMASTSFGGQDILTDAGSFGAGAVNFQIGTQSGDQLA 162
Cdd:PRK12805   81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTATGAATQVSIQASDKANDLIN 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 163 VDVSTEINAVNATIGLSGGLALGDLTTEGTAQAAlTTLTGANGEAGLLKEIGDARSALGANINRLDHTITNLGNMVENVS 242
Cdd:PRK12805  161 IDLFNAKGLSAGTITLGSGSTVAGYSALSVADAD-SSQEATEAIDELINNISNGRALLGAGMSRLSYNVSNVNNQSIATK 239

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1717878578 243 AAKGRIVDADFAVESSSMTKNQMLMQAGTTVLSQTNQLPGMAMSLL 288
Cdd:PRK12805  240 ASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLI 285
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 5-138 4.46e-36

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 125.92  E-value: 4.46e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578   5 MHTNYASLVTQNTLNNTSNLLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEGAMDE 84
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1717878578  85 MTNIVYRMNDLATQASNGTVSANDRVALDAEFQQLGEELANVMASTSFGGQDIL 138
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLL 134
PRK12806 PRK12806
flagellin; Provisional
 1-225 9.55e-29

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 114.40  E-value: 9.55e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578   1 MALSMHTNYASLVTQNTLNNTSNLLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEG 80
Cdd:PRK12806    1 MAQVINTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  81 AMDEMTNIVYRMNDLATQASNGTVSANDRVALDAEFQQLGEELANVMASTSFGGQDILTdaGSFGAGAvnFQIGTQSGDQ 160
Cdd:PRK12806   81 AMQETTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRILD--GSFSGAS--FQVGANSNQT 156

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 161 LAVDVSTEINAVNATIGLSGGLALGD-----LTTEGTAQAALTTLTGANGEAGLLKEIGDARSALGANIN 225
Cdd:PRK12806  157 INFSIGSIKASSIGGIATATGTEVAGaaatdITIAIGGGAATSINSSANFTGALNGQDATSAYAKAAAIN 226
PRK12803 PRK12803
flagellin; Provisional
 6-289 3.64e-28

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 110.67  E-value: 3.64e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578   6 HTNYASLVTQNTLNNTSNLLNTaMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEGAMDEM 85
Cdd:PRK12803    5 HNTSAINASRNNSINAANLSKT-QEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNLNEV 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  86 TNIVYRMNDLATQASNGTVSANDRVALDAEFQQLGEELANVMASTSFGGQDILTD------------------------- 140
Cdd:PRK12803   84 EKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHMLSNksaaqnvrtaeelgmqpakintpas 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 141 -AGSFGAGAVNFQIGTQSGDQLAVDV-STEINAVNATIGLSGGLALGDLTTEGTAQAA-----------------LTTLT 201
Cdd:PRK12803  164 lSGSQASWTLRVHVGANQDEAIAVNIyAANVANLFSGEGAQQAAPVQEGAQQEGAQAApapaaapaqggvnspvnVTTTV 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 202 GANGE----AGLLKEIGDARSALGANINRLDHTITNLGNMVENVSAAKGRIVDADFAVESSSMTKNQMLMQAGTTVLSQT 277
Cdd:PRK12803  244 DANMSlakiENAIRMISDQRANLGAFQNRLESIKASTEYAIENLKASYAQIKDATMTDEVVASTTNSILTQSAMAMIAQA 323

                         330
                  ....*....|..
gi 1717878578 278 NQLPGMAMSLLR 289
Cdd:PRK12803  324 NQVPQYVLSLLR 335
PRK08026 PRK08026
FliC/FljB family flagellin;
1-209 5.54e-27

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 109.83  E-value: 5.54e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578   1 MALSMHTNYASLVTQNTLNNTSNLLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEG 80
Cdd:PRK08026    1 MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  81 AMDEMTNIVYRMNDLATQASNGTVSANDRVALDAEFQQLGEELANVMASTSFGGQDILTDAGSfgagaVNFQIGTQSGDQ 160
Cdd:PRK08026   81 ALSEINNNLQRVRELTVQAATGTNSQSDLDSIQDEIKSRLDEIDRVSGQTQFNGVNVLAKDGS-----MKIQVGANDGET 155

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1717878578 161 LAVDVStEINAvnATIGLSGGLALGDLTTEGTAqAALTTLTGANGEAGL 209
Cdd:PRK08026  156 ITIDLK-KIDS--DTLGLDGFNVNGKGTVANTA-ATVSDLTAAGATLDT 200
PRK12808 PRK12808
flagellin; Provisional
 5-246 2.72e-26

flagellin; Provisional


Pssm-ID: 237212 [Multi-domain]  Cd Length: 476  Bit Score: 107.35  E-value: 2.72e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578   5 MHTNYASLVTQNTLNNTSNLLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEGAMDE 84
Cdd:PRK12808    3 INTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVAANNTQDGMSLIRTADSAMNS 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  85 MTNIVYRMNDLATQASNGTVSANDRVALDAEFQQLGEELANVMASTSFGGQDILTDAGSFGAGAVNFQIGTQSGDQLAVD 164
Cdd:PRK12808   83 VSNILLRMRDIANQSANGTNTDKNQAALQKEFAELQKQITYIADNTQFNDKNLLNSNSSINIQTLDSSDGDKQIGIDLKS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 165 VSTEINAV-NATIGlsgglALGDLTTEGTAQAALTTLTGANGEAGLLKEIGDARSALGANINRLDHTITNLGNMVENVSA 243
Cdd:PRK12808  163 ATLEALGInDLSIG-----ANTDIEAVSTKIAALDKNTIAKATVEAKAAFDKAKDDTKAEDSNILDAAADGFKDGKADDA 237


                  ...
gi 1717878578 244 AKG 246
Cdd:PRK12808  238 AKD 240
PRK12584 PRK12584
flagellin A; Reviewed
 1-165 1.04e-21

flagellin A; Reviewed


Pssm-ID: 237146 [Multi-domain]  Cd Length: 510  Bit Score: 94.59  E-value: 1.04e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578   1 MALSMHTNYASLVTQNTLNNTSNLLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEG 80
Cdd:PRK12584    1 MAFQVNTNINALNAHVQSALTQNALKTSLEKLSSGLRINKAADDASGMTIADSLRSQASSLGQAIANTNDGMGIIQVADK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  81 AMDEMTNIVYRMNDLATQASNGTVSANDRVALDAEFQQLGEELANVMASTSFGGQDILTdaGSFGAGavNFQIGTQSGDQ 160
Cdd:PRK12584   81 AMDEQLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTTYNGQALLS--GQFTNK--EFQVGAYSNQS 156


                  ....*
gi 1717878578 161 LAVDV 165
Cdd:PRK12584  157 IKASI 161
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 10-280 1.24e-21

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 92.03  E-value: 1.24e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  10 ASLVTQNTLNNTSNLLNTaMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEGAMDEMTNIV 89
Cdd:TIGR02550   8 YNNSLNSITNNQSRLAKL-QQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSSVGDVL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  90 YRMNDLATQASNGTVSANDRVALDAEFQQLGEELANVMASTS------FGGQDILTDAGSFGAGAVNFQIGTQSGDQLAV 163
Cdd:TIGR02550  87 QRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDgngryiFSGTKTDTPPFSEDEGGEVTYNGDGGQRKVQV 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 164 DVST--EINAVNATIGLSGGLALGDLT-TEGTAQAALTTLTGANGEAGLLKEIG--------------DARSALGANINR 226
Cdd:TIGR02550 167 ASNRsmPIGHPGDKVFMSIPNNDKSVFsTGDDLIDALKKLEDALSSGDAKAALSaslndldkaldnvlSARAEVGARLNR 246

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1717878578 227 LDHTITNLGNMVENVSAAKGRIVDADFAVESSSMTKNQMLMQAGTTVLSQTNQL 280
Cdd:TIGR02550 247 LENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQL 300
PRK13588 PRK13588
flagellin B; Provisional
 1-157 1.69e-21

flagellin B; Provisional


Pssm-ID: 237440 [Multi-domain]  Cd Length: 514  Bit Score: 93.78  E-value: 1.69e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578   1 MALSMHTNYASLVTQNTLNNTSNLLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEG 80
Cdd:PRK13588    1 MSFRINTNIAALNAHAVGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADSLRSQSANLGQAIRNANDAIGMVQTADK 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1717878578  81 AMDEMTNIVYRMNDLATQASNGTVSANDRVALDAEFQQLGEELANVMASTSFGGQDILTdaGSFGAGavNFQIGTQS 157
Cdd:PRK13588   81 AMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQMLS--GSFSNK--EFQIGAYS 153
PRK08411 PRK08411
flagellin; Reviewed
 1-202 2.15e-21

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 93.90  E-value: 2.15e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578   1 MALSMHTNYASLVTQNTLNNTSNLLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEG 80
Cdd:PRK08411    1 MGFRINTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  81 AMDEMTNIVYRMNDLATQASNGTVSANDRVALDAEFQQLGEELANVMASTSFGGQDILTdaGSFGAGavNFQIGTQSGDQ 160
Cdd:PRK08411   81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLS--GNFTNQ--EFQIGASSNQT 156

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1717878578 161 lavdVSTEINAVNAT-IGLSGGLALGDLTTEGTAQAALTTLTG 202
Cdd:PRK08411  157 ----VKATIGATQSSkIGVTRFETGARITTSGVVQLTIKNYNG 195
PRK13589 PRK13589
flagellin A;
1-202 6.00e-21

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 92.40  E-value: 6.00e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578   1 MALSMHTNYASLVTQNTLNNTSNLLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEG 80
Cdd:PRK13589    1 MGFRINTNIGALNAHANSVVNSRELDKSLSRLSSGLRINSAADDASGMAIADSLRSQAATLGQAINNGNDAIGILQTADK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  81 AMDEMTNIVYRMNDLATQASNGTVSANDRVALDAEFQQLGEELANVMASTSFGGQDILTdaGSFGAGavNFQIGTQSGDQ 160
Cdd:PRK13589   81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLS--GNFTNQ--EFQIGASSNQT 156

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1717878578 161 LAVDVSTeinAVNATIGLSGGLALGDLTTEGTAQAALTTLTG 202
Cdd:PRK13589  157 IKATIGA---TQSSKIGVTRFETGGRSFTSGEVQLTIKNYNG 195
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 210-288 1.26e-19

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 81.22  E-value: 1.26e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1717878578 210 LKEIGDARSALGANINRLDHTITNLGNMVENVSAAKGRIVDADFAVESSSMTKNQMLMQAGTTVLSQTNQLPGMAMSLL 288
Cdd:pfam00700   8 ITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQANQLPQSLLNLL 86
PRK08026 PRK08026
FliC/FljB family flagellin;
165-289 4.92e-19

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 86.72  E-value: 4.92e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 165 VSTEINAVNATIGLSGGLALGDLTTEG-----TAQAALTTLTGANGE--AGLLKEIGDA-------RSALGANINRLDHT 230
Cdd:PRK08026  390 TAKDGTTKTAANKLGGADGKTEVVTIDgktyvASDGKQTTLAEAAATttENPLAALDAAiasidkfRSSLGAVQNRLDSA 469

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1717878578 231 ITNLGNMVENVSAAKGRIVDADFAVESSSMTKNQMLMQAGTTVLSQTNQLPGMAMSLLR 289
Cdd:PRK08026  470 VTNLNNTTTNLSEAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLLQ 528
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 11-254 2.61e-13

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 68.87  E-value: 2.61e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  11 SLVTQNTLNN-TSNL--LNTAMERLSTGFRVNSAADD----AAGLQIATRLdAQTRGMSvamRNSQDGISMMQTAEGAMD 83
Cdd:PRK07701    6 NMLANNFLRNiNSNLekLDKYQEQLSTGKKITRPSDDpvvaMKSLRYRTDL-AEVEQYQ---KNASDAKSWLENTESALD 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  84 EMTNIVYRMNDLATQASNGTVSANDRVALDAEFQQLGEELANVmASTSFGGQDI----------LTDAG-----SFGAGA 148
Cdd:PRK07701   82 QATDILQRARELAVQAANGTNTQTDRQAIAQEIEQLKEQLIQI-ANTQYNGRYIfngtktdtppVTDDGdnienSTDSGD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 149 VNFQIGtqSGDQLAVDVsTEINAVNATIGLSGGL--ALGDLTTE---GTAQAALTTLTGANGEA-GLLKEigdaRSALGA 222
Cdd:PRK07701  161 IEFEIA--KGNTINVNV-PGDKAFGGQSGGGSNLfeMLDNLENAldsGDTQGVSNLLSDIDQHIdNVLAV----RAELGA 233

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1717878578 223 NINRLDHTITNLGNMVENVSAAKGRIVDADFA 254
Cdd:PRK07701  234 RSNRLELIENRLSDQEVNATKLLSDNEDVDLA 265
PRK06663 PRK06663
flagellar hook-associated protein 3;
1-141 3.31e-13

flagellar hook-associated protein 3;


Pssm-ID: 180648 [Multi-domain]  Cd Length: 419  Bit Score: 69.33  E-value: 3.31e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578   1 MALSMHTNYASLVTqnTLNNTSNLLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEG 80
Cdd:PRK06663    2 MRVSHPMQYNNLKS--SLRRQESKMTKLQNQLSTGQRIQKLRDDPTAATHSIRYKSRLFKLDRYQKNIDDGKDRLRYAEG 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1717878578  81 AMDEMTNIVYRMNDLATQASNGTVSANDRVALDAEFQQLGEEL---ANVMASTS---FGGQDILTDA 141
Cdd:PRK06663   80 YLQSITNILQRARELAVQGANGTYQADDKKKIAKEIDELLEDLvdiANARGADGysiFSGTKIDTEP 146
PRK12687 PRK12687
flagellin; Reviewed
 4-289 7.92e-12

flagellin; Reviewed


Pssm-ID: 105853 [Multi-domain]  Cd Length: 311  Bit Score: 64.69  E-value: 7.92e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578   4 SMHTNYASLVTQNTLNNTSNLLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEGAmd 83
Cdd:PRK12687    3 SLLTNTSAMTALQTLRNVSSSLATTQNRISTGYRVATASDNSAYWSIATTMRSDNEALSAVSDALGLGAATVDTMYTA-- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  84 eMTNIVYRMNDLATQASNGTVSAN----DRVALDAEFQQLGEELANVMASTSFGGQDIL---TDAGSFGAGAVNFQIGTQ 156
Cdd:PRK12687   81 -LTSVVGDSKSGLTALKAKLVAARepgiDRTKIQSEITAIQNDLKNTAGLAVFNGENWLsvdSSPSSYNATKSVVSSFTR 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 157 SGDQLAV---DVSTEINAVNATIGLSGGLALGDLTTEGTAQAALTT------------LTGANGEAGL----LKEIGDAR 217
Cdd:PRK12687  160 VGGTVAIktiDVNIAKLALYDTNGSSTTGILDKTVTVGTATASVSSidihlltdsatdLTKLDGYIGIvdqaLGSVTQAS 239

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1717878578 218 SALGANINRLDHTITNLGNMVENVSAAKGRIVDADFAVESSSMTKNQMLMQAGTTVLSQTNQLPGMAMSLLR 289
Cdd:PRK12687  240 ADLGATKTRIDSNSNFVKSLRDAIDRGVGQLVDADMNAESTRLQALQTQQQLGIQALSIANQGSQSILSLFK 311
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 15-171 1.80e-10

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 61.08  E-value: 1.80e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  15 QNTLNNTSNLLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEGAMDEMTNIVYRMND 94
Cdd:PRK08870   13 VNSMLDQQSQLSQLQQQLSSGKKLLTPSDDPVAAAQAVNLSQQSALLDQYTKNINLARNRLQQEESTLGSVEDLLQRARE 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  95 LATQASNGTVSANDRVALDAEFQQLGEELANVMASTS------FGGQDILTDAGSFGA-GAVNFQiGTQSGDQLAVDVST 167
Cdd:PRK08870   93 LVVQAGNGSLSDSDRQAIATELQGLRDQLLNLANSKDgsgnylFAGTQSGTQPFAFDAsGNVVYS-GDQGQRQVQVADSV 171


                  ....
gi 1717878578 168 EINA 171
Cdd:PRK08870  172 QVAT 175
flgL PRK07192
flagellar hook-associated protein FlgL; Reviewed
 1-280 1.61e-07

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 235956 [Multi-domain]  Cd Length: 305  Bit Score: 51.56  E-value: 1.61e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578   1 MALSMHTNYASLVTQNTLNNTSnlLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEG 80
Cdd:PRK07192    1 MRISTNTLYSTMLRSIQQLQAG--LGKLQQQMSTGKRILTPSDDPIASARLLELSREQSNNSQYADNIANLSNSLNNQEG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  81 AMDEMTNIVYRMNDLATQASNGTVSANDRVALDAEFQQLGEEL---ANVMASTS---FGGQDILTDAGSFGAGAVNFQIG 154
Cdd:PRK07192   79 HLSGVNDQLQSIRSLLVAAGNGSLSDEDRSAMATELRSMLDSLlglANAKDSEGnylFSGTASNTQPITFDAAGGTYTYN 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 155 TQSGDQLAVDVSTEINAVNAT---IGLSGGL----ALGDLTTE---GTAQAALTTLTGANGEA-----GLLKEIGDARSA 219
Cdd:PRK07192  159 GNSDQRQVQVGEGVQMPVNVTgqsVFQGGGLdvfnTLDKLIDLletPALPAADAALTAAVDEAlgaidDALDNVLTVRTE 238

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1717878578 220 LGANINRLDHTITNLGNMVENVSAAKGRIVDADFAVESSSMTKNQMLMQAGTTVLSQTNQL 280
Cdd:PRK07192  239 LGSRQNELDLLDGNHEDRKLQYQKILSDLQDLDYAEALSDLSNQMAALEAAQKTFVKINSL 299
flgL PRK12717
flagellar hook-associated protein 3;
1-135 3.78e-07

flagellar hook-associated protein 3;


Pssm-ID: 171679 [Multi-domain]  Cd Length: 523  Bit Score: 50.90  E-value: 3.78e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578   1 MALSMHTNYASLVTqNTLNNTSNLLNTAmERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEG 80
Cdd:PRK12717    1 MRISTSQFYESSAA-NYQRNYSNLVKTQ-EQASSGIRIQTAADDPVGAARLLQLQQQQAMLDQYSGNITTIKNSLTQEES 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1717878578  81 AMDEMTNIVYRMNDLATQASNGTVSANDRVALDAEFQQLGEELANVMASTSFGGQ 135
Cdd:PRK12717   79 TLTSINDTLQRARELAVSAGNGGLTDADRKAIASELKQIEAQLLGLMNSKDANGQ 133
PRK12584 PRK12584
flagellin A; Reviewed
 195-288 8.40e-06

flagellin A; Reviewed


Pssm-ID: 237146 [Multi-domain]  Cd Length: 510  Bit Score: 46.83  E-value: 8.40e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 195 AALTTLTGA----NGEAGLLKEIGDARSALGANINRLDHTITNLGNMVENVSAAKGRIVDADFAVESSSMTKNQMLMQAG 270
Cdd:PRK12584  412 SGVTTLRGAmvvmDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRDVDFAEESANFNKNNILAQSG 491

                          90
                  ....*....|....*...
gi 1717878578 271 TTVLSQTNQLPGMAMSLL 288
Cdd:PRK12584  492 SYAMSQANTVQQNILRLL 509
PRK14692 PRK14692
flagellar hook-associated protein FlgL;
16-135 1.68e-05

flagellar hook-associated protein FlgL;


Pssm-ID: 173155 [Multi-domain]  Cd Length: 749  Bit Score: 46.11  E-value: 1.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  16 NTLNNTSN---LLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEGAMDEMTNIVYRM 92
Cdd:PRK14692   11 NSVNNSMGgqsALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQDMVKLLEDF 90

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1717878578  93 NDLATQASNGTVSANDRVALDAEFQQLGEELANVmASTSFGGQ 135
Cdd:PRK14692   91 KVKVTQAASDSNSQTSREAIAKELERIKESIVQL-ANTSVNGQ 132
PRK13589 PRK13589
flagellin A;
143-289 1.83e-05

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 45.79  E-value: 1.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 143 SFGAGAvNFQIGTQSGDQLAVDVSTEINA--VNATIGLSGGLALGDLTTEGTA-------QAALTTLTGANGEAGL---- 209
Cdd:PRK13589  418 SVGSGK-NYSVGLSQGIQIISSASAMSTVynVSAGSGFSSGSGLSQFATMKTTaagvkdeTAGVTTLKGAMAVMDIaeta 496

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 210 LKEIGDARSALGANINRLDHTITNLGNMVENVSAAKGRIVDADFAVESSSMTKNQMLMQAGTTVLSQTNQLPGMAMSLLR 289
Cdd:PRK13589  497 ITNLDQIRADIGSVQNQLQVTINNITVTQVNVKAAESTIRDVDFAAESANFSKYNILAQSGSYAMSQANAVQQNVLKLLQ 576
PRK08411 PRK08411
flagellin; Reviewed
 143-289 2.55e-04

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 42.28  E-value: 2.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578 143 SFGAGAVNFQIGTQSGDQLAVDVSTEINAVNATIGLSGGLALGDLTTEGTA-------QAALTTLTGANGEAGL----LK 211
Cdd:PRK08411  415 SVGSGKNYSVGLSSGIQISSASAMSTVYVVSAGSGFSSGSNLSQFAAMKTTaanvkdeTAGVTTLKGAMAVMDIaetaIT 494

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1717878578 212 EIGDARSALGANINRLDHTITNLGNMVENVSAAKGRIVDADFAVESSSMTKNQMLMQAGTTVLSQTNQLPGMAMSLLR 289
Cdd:PRK08411  495 NLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQANAVQQNVLRLLQ 572
PRK12688 PRK12688
flagellin; Reviewed
 10-204 5.94e-04

flagellin; Reviewed


Pssm-ID: 171664 [Multi-domain]  Cd Length: 751  Bit Score: 41.40  E-value: 5.94e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  10 ASLVTQN--TLNNTSNLLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEGAMDEMTN 87
Cdd:PRK12688    7 SASVRQNllSLQSTADLLATTQSRLSTGKKVNSALDNPTNFFTAQSLDNRASDINNLLDGIGNGVQILQAANTGITSLQK 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  88 IVYRMNDLATQASNGTVSANDRVALDAEFQqlGEELANVMASTSF----GGQDILTDAGSFGAGAVnfqigtqSGDQLAV 163
Cdd:PRK12688   87 LIDSAKSIANQALQTVVGYSTKSNVSTTIS--GATADDLRGTTSYasatASSNVLYDGAAGGATAA-------TGATTLG 157

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1717878578 164 DVSTEINAVNATIGLSGGLALGDLTTEGTAQAALTTLTGAN 204
Cdd:PRK12688  158 GTAGSLAGTGATAGDGTTALTGTITLIATNGTTATGLLGNA 198
flgL PRK08412
flagellar hook-associated protein FlgL; Validated
 13-135 5.24e-03

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 236261 [Multi-domain]  Cd Length: 827  Bit Score: 38.26  E-value: 5.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  13 VTQNTLNNTSNL--------LNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEGAMDE 84
Cdd:PRK08412    3 VTFGSKYNQMNNyqnalqnkLNDVNTQIASGLKIQYGYQDSDVYNQNLKLQYEENTLDQGIDVASSAYTFTLNTDKALNE 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1717878578  85 MTNIVYRMNDLATQASNGTVSANDRVALDAEFQQLGEELANvMASTSFGGQ 135
Cdd:PRK08412   83 FSKTMEAFKTKLIQAANDVHSETSREAIANDLEALKEHMIN-LANTSIGGE 132
flgL PRK12718
flagellar hook-associated protein FlgL; Provisional
 11-144 5.25e-03

flagellar hook-associated protein FlgL; Provisional


Pssm-ID: 79176 [Multi-domain]  Cd Length: 510  Bit Score: 38.25  E-value: 5.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1717878578  11 SLVTQNTLN---NTSNLLNTAMERLSTGFRVNSAADDAAGLQIATRLDAQTRGMSVAMRNSQDGISMMQTAEGAMDEMTN 87
Cdd:PRK12718    6 ALIYQNGLNgvlNQEAAMARLQEQLSSGRRVLTPADDPLAAALAVNVSQTSSMNSNYDANRKQAEQALGAQTNTLQSVVK 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1717878578  88 IVYRMNDLATQASNGTVSANDRVALDAEFQQLGEELANVMASTSFGGQDILTDAGSF 144
Cdd:PRK12718   86 NMQEMLKRVVEAGNGTMSDADRQALVIALKGAREELVGLANATDGNGQYLFSGYKGF 142
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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