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Conserved domains on  [gi|1719114880|ref|WP_145447157|]
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toxin-antitoxin system [Mucisphaera calidilacus]

Protein Classification

StbC1 family protein( domain architecture ID 10008716)

StbC1 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
StbC1 COG4691
Plasmid stability protein StbC1, contains ribbon-helix-helix domain [Defense mechanisms];
3-81 2.89e-14

Plasmid stability protein StbC1, contains ribbon-helix-helix domain [Defense mechanisms];


:

Pssm-ID: 443726  Cd Length: 79  Bit Score: 61.46  E-value: 2.89e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1719114880  3 QFVVRNIEDDVRDRLREQAKVAGCSMEEYIRDILRAhALRDPSvPRKGLGTLMYERFKDCGL-DEPLEQF-DWGIAKPME 80
Cdd:COG4691    1 TLTIRNLDDEVKRRLKVRAAQHGRSMEAEVRAILRA-ALSPPP-RSPGLGEALRARFAEAGGtDLELPPGrDEAPREPPS 78


                 .
gi 1719114880 81 F 81
Cdd:COG4691   79 F 79
 
Name Accession Description Interval E-value
StbC1 COG4691
Plasmid stability protein StbC1, contains ribbon-helix-helix domain [Defense mechanisms];
3-81 2.89e-14

Plasmid stability protein StbC1, contains ribbon-helix-helix domain [Defense mechanisms];


Pssm-ID: 443726  Cd Length: 79  Bit Score: 61.46  E-value: 2.89e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1719114880  3 QFVVRNIEDDVRDRLREQAKVAGCSMEEYIRDILRAhALRDPSvPRKGLGTLMYERFKDCGL-DEPLEQF-DWGIAKPME 80
Cdd:COG4691    1 TLTIRNLDDEVKRRLKVRAAQHGRSMEAEVRAILRA-ALSPPP-RSPGLGEALRARFAEAGGtDLELPPGrDEAPREPPS 78


                 .
gi 1719114880 81 F 81
Cdd:COG4691   79 F 79
PRK13982 PRK13982
bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; ...
 1-37 2.71e-06

bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional


Pssm-ID: 172484 [Multi-domain]  Cd Length: 475  Bit Score: 43.20  E-value: 2.71e-06
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1719114880   1 MAQFVVRNIEDDVRDRLREQAKVAGCSMEEYIRDILR 37
Cdd:PRK13982    1 MASLTIRKLDDAIKAELRQRAAQNGRSMEEEVRVILR 37
 
Name Accession Description Interval E-value
StbC1 COG4691
Plasmid stability protein StbC1, contains ribbon-helix-helix domain [Defense mechanisms];
3-81 2.89e-14

Plasmid stability protein StbC1, contains ribbon-helix-helix domain [Defense mechanisms];


Pssm-ID: 443726  Cd Length: 79  Bit Score: 61.46  E-value: 2.89e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1719114880  3 QFVVRNIEDDVRDRLREQAKVAGCSMEEYIRDILRAhALRDPSvPRKGLGTLMYERFKDCGL-DEPLEQF-DWGIAKPME 80
Cdd:COG4691    1 TLTIRNLDDEVKRRLKVRAAQHGRSMEAEVRAILRA-ALSPPP-RSPGLGEALRARFAEAGGtDLELPPGrDEAPREPPS 78


                 .
gi 1719114880 81 F 81
Cdd:COG4691   79 F 79
PRK13982 PRK13982
bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; ...
 1-37 2.71e-06

bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional


Pssm-ID: 172484 [Multi-domain]  Cd Length: 475  Bit Score: 43.20  E-value: 2.71e-06
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1719114880   1 MAQFVVRNIEDDVRDRLREQAKVAGCSMEEYIRDILR 37
Cdd:PRK13982    1 MASLTIRKLDDAIKAELRQRAAQNGRSMEEEVRVILR 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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