hypothetical protein, partial [Parabacteroides sp. AM17-47]
Protein Classification
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| OMP_RagA_SusC super family | cl37378 | TonB-linked outer membrane protein, SusC/RagA family; This model describes a distinctive clade ... |
52-76 | 1.40e-09 | ||
TonB-linked outer membrane protein, SusC/RagA family; This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate] The actual alignment was detected with superfamily member TIGR04056: Pssm-ID: 274948 [Multi-domain] Cd Length: 981 Bit Score: 52.21 E-value: 1.40e-09
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| Name | Accession | Description | Interval | E-value | ||
| OMP_RagA_SusC | TIGR04056 | TonB-linked outer membrane protein, SusC/RagA family; This model describes a distinctive clade ... |
52-76 | 1.40e-09 | ||
TonB-linked outer membrane protein, SusC/RagA family; This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate] Pssm-ID: 274948 [Multi-domain] Cd Length: 981 Bit Score: 52.21 E-value: 1.40e-09
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| CarbopepD_reg_2 | pfam13715 | CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, ... |
54-76 | 7.33e-03 | ||
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593. Pssm-ID: 433425 [Multi-domain] Cd Length: 88 Bit Score: 32.18 E-value: 7.33e-03
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| Name | Accession | Description | Interval | E-value | ||
| OMP_RagA_SusC | TIGR04056 | TonB-linked outer membrane protein, SusC/RagA family; This model describes a distinctive clade ... |
52-76 | 1.40e-09 | ||
TonB-linked outer membrane protein, SusC/RagA family; This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate] Pssm-ID: 274948 [Multi-domain] Cd Length: 981 Bit Score: 52.21 E-value: 1.40e-09
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| CarbopepD_reg_2 | pfam13715 | CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, ... |
54-76 | 7.33e-03 | ||
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593. Pssm-ID: 433425 [Multi-domain] Cd Length: 88 Bit Score: 32.18 E-value: 7.33e-03
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| Blast search parameters | ||||
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