|
Name |
Accession |
Description |
Interval |
E-value |
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
7-324 |
0e+00 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 533.48 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 7 VLDVRNLKTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEPGrIVEGAILFDGEDLRQADAKR 86
Cdd:COG0444 1 LLEVRNLKVYFPTRRGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPPG-ITSGEILFDGEDLLKLSEKE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 87 WRALRGEEMAMIFQDPMMTLNPVLRVDTQMVETVLAHHDVSRSQAMARALEVLTMVGIPSPRERLRAYPHELSGGMRQRV 166
Cdd:COG0444 80 LRKIRGREIQMIFQDPMTSLNPVMTVGDQIAEPLRIHGGLSKAEARERAIELLERVGLPDPERRLDRYPHELSGGMRQRV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 167 AIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDVI 246
Cdd:COG0444 160 MIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGRIVEEGPVEELF 239
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1806544180 247 GHALHPYTLGLMASIPSARGRGQPLAQIPGMTPSLLNLPQGCAFRQRCPRATDACLRE-PEPRETGPGHWVRCWHAGEA 324
Cdd:COG0444 240 ENPRHPYTRALLSSIPRLDPDGRRLIPIPGEPPSLLNPPSGCRFHPRCPYAMDRCREEePPLREVGPGHRVACHLYEEE 318
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-324 |
6.50e-132 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 378.68 E-value: 6.50e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 1 MTDKAPVLDVRNLKTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEPGRIvEGAILFDGEDLR 80
Cdd:PRK09473 6 QQQADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRI-GGSATFNGREIL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 81 QADAKRWRALRGEEMAMIFQDPMMTLNPVLRVDTQMVETVLAHHDVSRSQAMARALEVLTMVGIPSPRERLRAYPHELSG 160
Cdd:PRK09473 85 NLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 161 GMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETG 240
Cdd:PRK09473 165 GMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYG 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 241 TSKDVIGHALHPYTLGLMASIPSARGRGQPLAQIPGMTPSLLNLPQGCAFRQRCPRATDACLREPEPRETGPGHWVRCWH 320
Cdd:PRK09473 245 NARDVFYQPSHPYSIGLLNAVPRLDAEGESLLTIPGNPPNLLRLPKGCPFQPRCPHAMEICSSAPPLEEFGPGRLRACFK 324
|
....
gi 1806544180 321 AGEA 324
Cdd:PRK09473 325 PVEE 328
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-270 |
3.90e-129 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 378.64 E-value: 3.90e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 1 MTDkAPVLDVRNLKTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEPGRIVEGAILFDGEDLR 80
Cdd:COG4172 1 MMS-MPLLSVEDLSVAFGQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSVTALSILRLLPDPAAHPSGSILFDGQDLL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 81 QADAKRWRALRGEEMAMIFQDPMMTLNPVLRVDTQMVETVLAHHDVSRSQAMARALEVLTMVGIPSPRERLRAYPHELSG 160
Cdd:COG4172 80 GLSERELRRIRGNRIAMIFQEPMTSLNPLHTIGKQIAEVLRLHRGLSGAAARARALELLERVGIPDPERRLDAYPHQLSG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 161 GMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETG 240
Cdd:COG4172 160 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVMRQGEIVEQG 239
|
250 260 270
....*....|....*....|....*....|
gi 1806544180 241 TSKDVIGHALHPYTLGLMASIPSARGRGQP 270
Cdd:COG4172 240 PTAELFAAPQHPYTRKLLAAEPRGDPRPVP 269
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
1-324 |
2.72e-123 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 356.73 E-value: 2.72e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 1 MTDKAPVLDVRNLKTHF------FTRA-GVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdEPgriVEGAIL 73
Cdd:COG4608 1 AAMAEPLLEVRDLKKHFpvrgglFGRTvGVVKAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLE-EP---TSGEIL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 74 FDGEDLRQADAKRWRALRgEEMAMIFQDPMMTLNPVLRVDTQMVETVLAHHDVSRSQAMARALEVLTMVGIPspRERLRA 153
Cdd:COG4608 77 FDGQDITGLSGRELRPLR-RRMQMVFQDPYASLNPRMTVGDIIAEPLRIHGLASKAERRERVAELLELVGLR--PEHADR 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 154 YPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYA 233
Cdd:COG4608 154 YPHEFSGGQRQRIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDLQDELGLTYLFISHDLSVVRHISDRVAVMYL 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 234 GRIVETGTSKDVIGHALHPYTLGLMASIPS---ARGRGQPLaqIPGMTPSLLNLPQGCAFRQRCPRATDACLRE-PEPRE 309
Cdd:COG4608 234 GKIVEIAPRDELYARPLHPYTQALLSAVPVpdpERRRERIV--LEGDVPSPLNPPSGCRFHTRCPYAQDRCATEePPLRE 311
|
330
....*....|....*
gi 1806544180 310 TGPGHWVRCWHAGEA 324
Cdd:COG4608 312 VGPGHQVACHLAEEG 326
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
7-240 |
2.73e-113 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 327.54 E-value: 2.73e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 7 VLDVRNLKTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRQADaKR 86
Cdd:cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL----KPTSGSIIFDGKDLLKLS-RR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 87 WRALRGEEMAMIFQDPMMTLNPVLRVDTQMVETVLAHHDVSRSQAMARALEVLtMVGIPSPRERLRAYPHELSGGMRQRV 166
Cdd:cd03257 76 LRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLL-LVGVGLPEEVLNRYPHELSGGQRQRV 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1806544180 167 AIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETG 240
Cdd:cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
7-318 |
4.41e-108 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 317.84 E-value: 4.41e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 7 VLDVRNLKTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEPGRIVEGAILFDGEDLRQADAKR 86
Cdd:PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 87 WRALRGEEMAMIFQDPMMTLNPVLRVDTQMVETVLAHHDVSRSQAMARALEVLTMVGIPSPRERLRAYPHELSGGMRQRV 166
Cdd:PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 167 AIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDVI 246
Cdd:PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIF 242
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1806544180 247 GHALHPYTLGLMASIPSARGRGQPLAQIPGMTPSLLNLPQGCAFRQRCPRATDACLREPEPRETGPGHWVRC 318
Cdd:PRK11022 243 RAPRHPYTQALLRALPEFAQDKARLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLAGRQSKC 314
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
2-267 |
8.57e-104 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 313.38 E-value: 8.57e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 2 TDKAPVLDVRNLKTHFFTRA-GVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLR 80
Cdd:COG1123 255 AAAEPLLEVRNLSKRYPVRGkGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLL----RPTSGSILFDGKDLT 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 81 QADAKRWRALRGEeMAMIFQDPMMTLNPVLRVDTQMVETVLAHHDVSRSQAMARALEVLTMVGIPspRERLRAYPHELSG 160
Cdd:COG1123 331 KLSRRSLRELRRR-VQMVFQDPYSSLNPRMTVGDIIAEPLRLHGLLSRAERRERVAELLERVGLP--PDLADRYPHELSG 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 161 GMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETG 240
Cdd:COG1123 408 GQRQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDG 487
|
250 260
....*....|....*....|....*..
gi 1806544180 241 TSKDVIGHALHPYTLGLMASIPSARGR 267
Cdd:COG1123 488 PTEEVFANPQHPYTRALLAAVPSLDPA 514
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
5-282 |
4.63e-95 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 291.04 E-value: 4.63e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 5 APVLDVRNLKTHFftRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEPGRIvEGAILFDGEDLRQADA 84
Cdd:COG1123 2 TPLLEVRDLSVRY--PGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGGRI-SGEVLLDGRDLLELSE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 85 krwrALRGEEMAMIFQDPMMTLNPVlRVDTQMVEtVLAHHDVSRSQAMARALEVLTMVGIPsprERLRAYPHELSGGMRQ 164
Cdd:COG1123 79 ----ALRGRRIGMVFQDPMTQLNPV-TVGDQIAE-ALENLGLSRAEARARVLELLEAVGLE---RRLDRYPHQLSGGQRQ 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 165 RVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKD 244
Cdd:COG1123 150 RVAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEE 229
|
250 260 270
....*....|....*....|....*....|....*...
gi 1806544180 245 VIGHALhpytlgLMASIPSARGRGQPLAQIPGMTPSLL 282
Cdd:COG1123 230 ILAAPQ------ALAAVPRLGAARGRAAPAAAAAEPLL 261
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
1-321 |
2.64e-94 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 283.14 E-value: 2.64e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 1 MTDKAPVLDVRNLKTHF---------FTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGA 71
Cdd:PRK15079 2 TEGKKVLLEVADLKVHFdikdgkqwfWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLV----KATDGE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 72 ILFDGEDLRQADAKRWRALRgEEMAMIFQDPMMTLNPVLRVDTQMVETVLAHH-DVSRSQAMARALEVLTMVGI-PSPRE 149
Cdd:PRK15079 78 VAWLGKDLLGMKDDEWRAVR-SDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHpKLSRQEVKDRVKAMMLKVGLlPNLIN 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 150 RlraYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIA 229
Cdd:PRK15079 157 R---YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVL 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 230 VMYAGRIVETGTSKDVIGHALHPYTLGLMASIP---SARGRGQPLAQIPGMTPSLLNLPQGCAFRQRCPRATDACLREPE 306
Cdd:PRK15079 234 VMYLGHAVELGTYDEVYHNPLHPYTKALMSAVPipdPDLERNKTIQLLEGELPSPINPPSGCVFRTRCPIAGPECAKTRP 313
|
330
....*....|....*
gi 1806544180 307 PRETGPGHWVRCWHA 321
Cdd:PRK15079 314 VLEGSFRHAVSCLKV 328
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
6-318 |
1.77e-92 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 278.33 E-value: 1.77e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 6 PVLDVRNLKTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEPGRIVEGAILFDGEDLRQADAK 85
Cdd:COG4170 2 PLLDIRNLTIEIDTPQGRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDNWHVTADRFRWNGIDLLKLSPR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 86 RWRALRGEEMAMIFQDPMMTLNPVLRVDTQMVEtVLAHHDVSRS------QAMARALEVLTMVGIPSPRERLRAYPHELS 159
Cdd:COG4170 82 ERRKIIGREIAMIFQEPSSCLDPSAKIGDQLIE-AIPSWTFKGKwwqrfkWRKKRAIELLHRVGIKDHKDIMNSYPHELT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 160 GGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVET 239
Cdd:COG4170 161 EGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTVES 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 240 GTSKDVIGHALHPYTLGLMASIPSARG---RGQPLAQIPGMTPSLLNLPQGCAFRQRCPRATDACLREPePRETGPGHWV 316
Cdd:COG4170 241 GPTEQILKSPHHPYTKALLRSMPDFRQplpHKSRLNTLPGSIPPLQHLPIGCRLGPRCPYAQKKCVETP-RLRKIKGHEF 319
|
..
gi 1806544180 317 RC 318
Cdd:COG4170 320 AC 321
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
2-262 |
1.79e-89 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 276.95 E-value: 1.79e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 2 TDKAPVLDVRNLKTHFFTRAGV-------VKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDepgriVEGAILF 74
Cdd:COG4172 270 PDAPPLLEARDLKVWFPIKRGLfrrtvghVKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLIP-----SEGEIRF 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 75 DGEDLRQADAKRWRALRgEEMAMIFQDPMMTLNPVLRVDTQMVETVLAHH-DVSRSQAMARALEVLTMVGIPsPRERLRa 153
Cdd:COG4172 345 DGQDLDGLSRRALRPLR-RRMQVVFQDPFGSLSPRMTVGQIIAEGLRVHGpGLSAAERRARVAEALEEVGLD-PAARHR- 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 154 YPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYA 233
Cdd:COG4172 422 YPHEFSGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQREHGLAYLFISHDLAVVRALAHRVMVMKD 501
|
250 260
....*....|....*....|....*....
gi 1806544180 234 GRIVETGTSKDVIGHALHPYTLGLMASIP 262
Cdd:COG4172 502 GKVVEQGPTEQVFDAPQHPYTRALLAAAP 530
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
5-321 |
4.78e-86 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 261.82 E-value: 4.78e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 5 APVLDVRNLKTH------FFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGfSLMGLLDEPgriVEGAILFDGED 78
Cdd:PRK11308 3 QPLLQAIDLKKHypvkrgLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLA-RLLTMIETP---TGGELYYQGQD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 79 LRQADAKRWRALRgEEMAMIFQDPMMTLNPVLRVDTQMVETVLAHHDVSRSQAMARALEVLTMVGIPSprERLRAYPHEL 158
Cdd:PRK11308 79 LLKADPEAQKLLR-QKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP--EHYDRYPHMF 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 159 SGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVE 238
Cdd:PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVE 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 239 TGTSKDVIGHALHPYTLGLMASIPSAR-GRGQPLAQIPGMTPSLLNLPQGCAFRQRCPRATDACLRE-PEPRETGpGHWV 316
Cdd:PRK11308 236 KGTKEQIFNNPRHPYTQALLSATPRLNpDDRRERIKLTGELPSPLNPPPGCAFNARCPRAFGRCRQEqPQLRDYD-GRLV 314
|
....*
gi 1806544180 317 RCWHA 321
Cdd:PRK11308 315 ACFAV 319
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
6-286 |
2.24e-84 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 263.87 E-value: 2.24e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 6 PVLDVRNLKTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEPGRI-VEGAILFDGEDLRQADA 84
Cdd:PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVyPSGDIRFHGESLLHASE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 85 KRWRALRGEEMAMIFQDPMMTLNPVLRVDTQMVETVLAHHDVSRSQAMARALEVLTMVGIPSPRERLRAYPHELSGGMRQ 164
Cdd:PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQ 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 165 RVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKD 244
Cdd:PRK15134 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAAT 243
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1806544180 245 VIGHALHPYTLGLMASIPSargrGQPLAqIPGMTPSLLNLPQ 286
Cdd:PRK15134 244 LFSAPTHPYTQKLLNSEPS----GDPVP-LPEPASPLLDVEQ 280
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
6-318 |
4.99e-80 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 246.64 E-value: 4.99e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 6 PVLDVRNLKTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEPGRIVEGAILFDGEDLRQADAK 85
Cdd:PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 86 RWRALRGEEMAMIFQDPMMTLNPVLRVDTQMVETVLAHHDVSR-----SQAMARALEVLTMVGIPSPRERLRAYPHELSG 160
Cdd:PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRwwqrfGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 161 GMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETG 240
Cdd:PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 241 TSKDVIGHALHPYTLGLMASIPSArGRGQP----LAQIPGMTPSLLNLPQGCAFRQRCPRATDACLREPEPRETgPGHWV 316
Cdd:PRK15093 242 PSKELVTTPHHPYTQALIRAIPDF-GSAMPhksrLNTLPGAIPLLEHLPIGCRLGPRCPYAQRECIETPRLTGA-KNHLY 319
|
..
gi 1806544180 317 RC 318
Cdd:PRK15093 320 AC 321
|
|
| nickel_nikD |
TIGR02770 |
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a ... |
26-259 |
5.67e-80 |
|
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131817 [Multi-domain] Cd Length: 230 Bit Score: 242.66 E-value: 5.67e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 26 AVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEPGRIVEGAILFDGEDLRQAdakrwrALRGEEMAMIFQDPMMT 105
Cdd:TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL------SIRGRHIATIMQNPRTA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 106 LNPVLRVDTQMVETVLAHHDVSrSQAMARALEVLTMVGIPSPRERLRAYPHELSGGMRQRVAIAIALLNSPRVIIADEPT 185
Cdd:TIGR02770 75 FNPLFTMGNHAIETLRSLGKLS-KQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPT 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1806544180 186 TALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDVIGHALHPYTLGLMA 259
Cdd:TIGR02770 154 TDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLS 227
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
8-267 |
1.69e-79 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 242.02 E-value: 1.69e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRQADAKRW 87
Cdd:COG1124 2 LEVRNLSVSYGQGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLE----RPWSGEVTFDGRPVTRRRRKAF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 88 RAlrgeEMAMIFQDPMMTLNPVLRVDTQMVETVLAHHdvsRSQAMARALEVLTMVGIPsPRERLRaYPHELSGGMRQRVA 167
Cdd:COG1124 78 RR----RVQMVFQDPYASLHPRHTVDRILAEPLRIHG---LPDREERIAELLEQVGLP-PSFLDR-YPHQLSGGQRQRVA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 168 IAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDVIG 247
Cdd:COG1124 149 IARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLA 228
|
250 260
....*....|....*....|
gi 1806544180 248 HALHPYTLGLMASIPSARGR 267
Cdd:COG1124 229 GPKHPYTRELLAASLAFERA 248
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
2-262 |
4.39e-76 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 244.76 E-value: 4.39e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 2 TDKAPVLDVRNLKTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEPGRIVE-GAILFDGE--- 77
Cdd:PRK10261 7 LDARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQcDKMLLRRRsrq 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 78 --DLRQADAKRWRALRGEEMAMIFQDPMMTLNPVLRVDTQMVETVLAHHDVSRSQAMARALEVLTMVGIPSPRERLRAYP 155
Cdd:PRK10261 87 viELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYP 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 156 HELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGR 235
Cdd:PRK10261 167 HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGE 246
|
250 260
....*....|....*....|....*..
gi 1806544180 236 IVETGTSKDVIGHALHPYTLGLMASIP 262
Cdd:PRK10261 247 AVETGSVEQIFHAPQHPYTRALLAAVP 273
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
5-238 |
1.85e-64 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 202.97 E-value: 1.85e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 5 APVLDVRNLKTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPGrivEGAILFDGEDLRQADA 84
Cdd:COG1136 2 SPLLELRNLTKSYGTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKS-TLLNILGGLDRPT---SGEVLIDGQDISSLSE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 85 KRWRALRGEEMAMIFQDPmmTLNPVLRVdTQMVETVLAHHDVSRSQAMARALEVLTMVGIPsprERLRAYPHELSGGMRQ 164
Cdd:COG1136 78 RELARLRRRHIGFVFQFF--NLLPELTA-LENVALPLLLAGVSRKERRERARELLERVGLG---DRLDHRPSQLSGGQQQ 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1806544180 165 RVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAvVAGLADRIAVMYAGRIVE 238
Cdd:COG1136 152 RVAIARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPE-LAARADRVIRLRDGRIVS 224
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
8-236 |
4.83e-59 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 188.85 E-value: 4.83e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPgriVEGAILFDGEDLRQADAKRW 87
Cdd:cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKS-TLLNILGGLDRP---TSGEVRVDGTDISKLSEKEL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 88 RALRGEEMAMIFQDPmmTLNPVLRVdTQMVETVLAHHDVSRSQAMARALEVLTMVGIPsprERLRAYPHELSGGMRQRVA 167
Cdd:cd03255 77 AAFRRRHIGFVFQSF--NLLPDLTA-LENVELPLLLAGVPKKERRERAEELLERVGLG---DRLNHYPSELSGGQQQRVA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1806544180 168 IAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLaVVAGLADRIAVMYAGRI 236
Cdd:cd03255 151 IARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP-ELAEYADRIIELRDGKI 218
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
6-316 |
6.11e-59 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 199.70 E-value: 6.11e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 6 PVLDVRNLKTHFFTRAGV-------VKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEPGriveGAILFDGED 78
Cdd:PRK10261 312 PILQVRNLVTRFPLRSGLlnrvtreVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQG----GEIIFNGQR 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 79 LRQADAKRWRALRgEEMAMIFQDPMMTLNPVLRVDTQMVETVLAHHDVSRSQAMARALEVLTMVGIpSPRERLRaYPHEL 158
Cdd:PRK10261 388 IDTLSPGKLQALR-RDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGL-LPEHAWR-YPHEF 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 159 SGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVE 238
Cdd:PRK10261 465 SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVE 544
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 239 TGTSKDVIGHALHPYTLGLMASIPSA---RGRGQPLaqipgmtpsLLNLPQGCAFRQRCPRATDACLrepepRETGPGHW 315
Cdd:PRK10261 545 IGPRRAVFENPQHPYTRKLMAAVPVAdpsRQRPQRV---------LLSDDLPSNIHLRGEEVAAVSL-----QCVGPGHY 610
|
.
gi 1806544180 316 V 316
Cdd:PRK10261 611 V 611
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
27-260 |
2.62e-56 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 182.98 E-value: 2.62e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 27 VDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEPGRIVEGAILFDGEDLRQADakrwraLRGEEMAMIFQDPMMTL 106
Cdd:PRK10418 19 VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCA------LRGRKIATIMQNPRSAF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 107 NPVLRVDTQMVETVLAhhdVSRSQAMARALEVLTMVGIPSPRERLRAYPHELSGGMRQRVAIAIALLNSPRVIIADEPTT 186
Cdd:PRK10418 93 NPLHTMHTHARETCLA---LGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTT 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1806544180 187 ALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDVIGHALHPYTLGLMAS 260
Cdd:PRK10418 170 DLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRSLVSA 243
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
3-259 |
3.63e-56 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 190.30 E-value: 3.63e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 3 DKAPVLDVRNLKTHFFTRAGVVK-------AVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEpgrivEGAILFD 75
Cdd:PRK15134 271 PASPLLDVEQLQVAFPIRKGILKrtvdhnvVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINS-----QGEIWFD 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 76 GEDLRQADAKRWRALRgEEMAMIFQDPMMTLNPVLRVDTQMVETVLAHH-DVSRSQAMARALEVLTMVGI-PSPRERlra 153
Cdd:PRK15134 346 GQPLHNLNRRQLLPVR-HRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQpTLSAAQREQQVIAVMEEVGLdPETRHR--- 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 154 YPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYA 233
Cdd:PRK15134 422 YPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQ 501
|
250 260
....*....|....*....|....*.
gi 1806544180 234 GRIVETGTSKDVIGHALHPYTLGLMA 259
Cdd:PRK15134 502 GEVVEQGDCERVFAAPQQEYTRQLLA 527
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-239 |
3.49e-55 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 180.29 E-value: 3.49e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 1 MTDKAPVLDVRNLKTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPgriVEGAILFDGEDLR 80
Cdd:COG1116 1 MSAAAPALELRGVSKRFPTGGGGVTALDDVSLTVAAGEFVALVGPSGCGKS-TLLRLIAGLEKP---TSGEVLVDGKPVT 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 81 QADAKRwralrgeemAMIFQDPmmTLNPVLRVdTQMVETVLAHHDVSRSQAMARALEVLTMVGIpspRERLRAYPHELSG 160
Cdd:COG1116 77 GPGPDR---------GVVFQEP--ALLPWLTV-LDNVALGLELRGVPKAERRERARELLELVGL---AGFEDAYPHQLSG 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 161 GMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDL--AVVagLADRIAVMYA--GRI 236
Cdd:COG1116 142 GMRQRVAIARALANDPEVLLMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTHDVdeAVF--LADRVVVLSArpGRI 219
|
...
gi 1806544180 237 VET 239
Cdd:COG1116 220 VEE 222
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
8-249 |
3.87e-55 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 179.07 E-value: 3.87e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKthfFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLM-GLLdepgRIVEGAILFDGEDLRQADAKR 86
Cdd:COG1122 1 IELENLS---FSYPGGTPALDDVSLSIEKGEFVAIIGPNGSGKS-TLLRLLnGLL----KPTSGEVLVDGKDITKKNLRE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 87 WRalrgEEMAMIFQDPmmtlnpvlrvDTQMVE-TV-------LAHHDVSRSQAMARALEVLTMVGIPSPRERlraYPHEL 158
Cdd:COG1122 73 LR----RKVGLVFQNP----------DDQLFApTVeedvafgPENLGLPREEIRERVEEALELVGLEHLADR---PPHEL 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 159 SGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCREtGTALIWITHDLAVVAGLADRIAVMYAGRIVE 238
Cdd:COG1122 136 SGGQKQRVAIAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNKE-GKTVIIVTHDLDLVAELADRVIVLDDGRIVA 214
|
250
....*....|.
gi 1806544180 239 TGTSKDVIGHA 249
Cdd:COG1122 215 DGTPREVFSDY 225
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
10-274 |
4.95e-54 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 179.89 E-value: 4.95e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 10 VRNLKTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSitgfSL---MGLLDEPGrivEGAILFDGEDLRQADAKR 86
Cdd:COG1135 4 LENLSKTFPTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKS----TLircINLLERPT---SGSVLVDGVDLTALSERE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 87 WRALRgEEMAMIFQDP--MMTlnpvlRvdtqmveTV-------LAHHDVSRSQAMARALEVLTMVGIpspRERLRAYPHE 157
Cdd:COG1135 77 LRAAR-RKIGMIFQHFnlLSS-----R-------TVaenvalpLEIAGVPKAEIRKRVAELLELVGL---SDKADAYPSQ 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 158 LSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIV 237
Cdd:COG1135 141 LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIV 220
|
250 260 270
....*....|....*....|....*....|....*..
gi 1806544180 238 ETGTSKDVIGHALHPYTLGLMASIPSARGRGQPLAQI 274
Cdd:COG1135 221 EQGPVLDVFANPQSELTRRFLPTVLNDELPEELLARL 257
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
7-248 |
1.27e-53 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 175.46 E-value: 1.27e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 7 VLDVRNLKTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPGrivEGAILFDGEDLRQADAKR 86
Cdd:cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKS-TLIRCINGLERPT---SGSVLVDGTDLTLLSGKE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 87 WRALRgEEMAMIFQDpmmtLNpVLRVDT--QMVETVLAHHDVSRSQAMARALEVLTMVGIpspRERLRAYPHELSGGMRQ 164
Cdd:cd03258 77 LRKAR-RRIGMIFQH----FN-LLSSRTvfENVALPLEIAGVPKAEIEERVLELLELVGL---EDKADAYPAQLSGGQKQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 165 RVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKD 244
Cdd:cd03258 148 RVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEE 227
|
....
gi 1806544180 245 VIGH 248
Cdd:cd03258 228 VFAN 231
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
8-250 |
1.61e-52 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 172.56 E-value: 1.61e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRqADAKRW 87
Cdd:COG1131 1 IEVRGLTKRY----GDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLL----RPTSGEVRVLGEDVA-RDPAEV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 88 RALrgeeMAMIFQDPmmTLNPVLRVdTQMVETVLAHHDVSRSQAMARALEVLTMVGIPsprERLRAYPHELSGGMRQRVA 167
Cdd:COG1131 72 RRR----IGYVPQEP--ALYPDLTV-RENLRFFARLYGLPRKEARERIDELLELFGLT---DAADRKVGTLSGGMKQRLG 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 168 IAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCREtGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDVIG 247
Cdd:COG1131 142 LALALLHDPELLILDEPTSGLDPEARRELWELLRELAAE-GKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKA 220
|
...
gi 1806544180 248 HAL 250
Cdd:COG1131 221 RLL 223
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
6-260 |
1.85e-52 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 173.48 E-value: 1.85e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 6 PVLDVRNLKTHFFTRAG-----VVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLlDEPgriVEGAILFDGEDLR 80
Cdd:COG4167 3 ALLEVRNLSKTFKYRTGlfrrqQFEAVKPVSFTLEAGQTLAIIGENGSGKSTLAKMLAGI-IEP---TSGEILINGHKLE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 81 QADAK-RWRALRgeemaMIFQDPMMTLNPVLRVDTQMVETVLAHHDVSRSQAMARALEVLTMVGIPspRERLRAYPHELS 159
Cdd:COG4167 79 YGDYKyRCKHIR-----MIFQDPNTSLNPRLNIGQILEEPLRLNTDLTAEEREERIFATLRLVGLL--PEHANFYPHMLS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 160 GGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVET 239
Cdd:COG4167 152 SGQKQRVALARALILQPKIIIADEALAALDMSVRSQIINLMLELQEKLGISYIYVSQHLGIVKHISDKVLVMHQGEVVEY 231
|
250 260
....*....|....*....|.
gi 1806544180 240 GTSKDVIGHALHPYTLGLMAS 260
Cdd:COG4167 232 GKTAEVFANPQHEVTKRLIES 252
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
8-239 |
3.98e-52 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 171.12 E-value: 3.98e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPGRiveGAILFDGEDLRQADAKRw 87
Cdd:cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKS-TLLRIIAGLERPTS---GEVLVDGEPVTGPGPDR- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 88 ralrgeemAMIFQDPmmTLNPVLRVdTQMVETVLAHHDVSRSQAMARALEVLTMVGIpspRERLRAYPHELSGGMRQRVA 167
Cdd:cd03293 76 --------GYVFQQD--ALLPWLTV-LDNVALGLELQGVPKAEARERAEELLELVGL---SGFENAYPHQLSGGMRQRVA 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1806544180 168 IAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYA--GRIVET 239
Cdd:cd03293 142 LARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSArpGRIVAE 215
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
6-253 |
2.46e-50 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 167.08 E-value: 2.46e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 6 PVLDVRNLKTHFFTRagvvKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRQADAK 85
Cdd:COG1127 4 PMIEVRNLTKSFGDR----VVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLL----RPDSGEILVDGQDITGLSEK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 86 RWRALRgEEMAMIFQDPM----MTL--N---PvLRvdtqmvetvlAHHDVSRSQAMARALEVLTMVGIPSPRERlraYPH 156
Cdd:COG1127 76 ELYELR-RRIGMLFQGGAlfdsLTVfeNvafP-LR----------EHTDLSEAEIRELVLEKLELVGLPGAADK---MPS 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 157 ELSGGMRQRVAIAIALLNSPRVIIADEPTTALD-VTiqAQILYE-VRRLCRETGTALIWITHDLAVVAGLADRIAVMYAG 234
Cdd:COG1127 141 ELSGGMRKRVALARALALDPEILLYDEPTAGLDpIT--SAVIDElIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADG 218
|
250
....*....|....*....
gi 1806544180 235 RIVETGTSKDVIgHALHPY 253
Cdd:COG1127 219 KIIAEGTPEELL-ASDDPW 236
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
8-240 |
2.97e-48 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 160.76 E-value: 2.97e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRQADAKRw 87
Cdd:cd03259 1 LELKGLSKTY----GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE----RPDSGEILIDGRDVTGVPPER- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 88 ralrgEEMAMIFQDPmmTLNPVLRVdtqmVETV---LAHHDVSRSQAMARALEVLTMVGIPSPRERlraYPHELSGGMRQ 164
Cdd:cd03259 72 -----RNIGMVFQDY--ALFPHLTV----AENIafgLKLRGVPKAEIRARVRELLELVGLEGLLNR---YPHELSGGQQQ 137
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1806544180 165 RVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETG 240
Cdd:cd03259 138 RVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
14-253 |
3.77e-48 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 162.43 E-value: 3.77e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 14 KTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPGRiveGAILFDGEDLRQADAKRWRALRGE 93
Cdd:cd03294 27 KEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKS-TLLRCINRLIEPTS---GKVLIDGQDIAAMSRKELRELRRK 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 94 EMAMIFQD----PMMTlnpVLRVDTQMVEtvLAHhdVSRSQAMARALEVLTMVGIpspRERLRAYPHELSGGMRQRVAIA 169
Cdd:cd03294 103 KISMVFQSfallPHRT---VLENVAFGLE--VQG--VPRAEREERAAEALELVGL---EGWEHKYPDELSGGMQQRVGLA 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 170 IALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDVIGHA 249
Cdd:cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252
|
....
gi 1806544180 250 LHPY 253
Cdd:cd03294 253 ANDY 256
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
4-245 |
5.78e-48 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 164.50 E-value: 5.78e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 4 KAPVLDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSITgfsLM---GLLdepgRIVEGAILFDGEDL- 79
Cdd:COG3842 2 AMPALELENVSKRY----GDVTALDDVSLSIEPGEFVALLGPSGCGKTTL---LRmiaGFE----TPDSGRILLDGRDVt 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 80 RQADAKRwralrgeEMAMIFQD----PMMTlnpVLrvdtqmvETV---LAHHDVSRSQAMARALEVLTMVGIPsprERLR 152
Cdd:COG3842 71 GLPPEKR-------NVGMVFQDyalfPHLT---VA-------ENVafgLRMRGVPKAEIRARVAELLELVGLE---GLAD 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 153 AYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHD----LAvvagLADRI 228
Cdd:COG3842 131 RYPHQLSGGQQQRVALARALAPEPRVLLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTHDqeeaLA----LADRI 206
|
250
....*....|....*..
gi 1806544180 229 AVMYAGRIVETGTSKDV 245
Cdd:COG3842 207 AVMNDGRIEQVGTPEEI 223
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
10-235 |
1.04e-47 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 159.55 E-value: 1.04e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 10 VRNLktHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQADAKRWRa 89
Cdd:cd03225 2 LKNL--SFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKS----TLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELR- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 90 lrgEEMAMIFQDPmmtlnpvlrvDTQMV-ETV-------LAHHDVSRSQAMARALEVLTMVGIPSPRERlraYPHELSGG 161
Cdd:cd03225 75 ---RKVGLVFQNP----------DDQFFgPTVeeevafgLENLGLPEEEIEERVEEALELVGLEGLRDR---SPFTLSGG 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1806544180 162 MRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCREtGTALIWITHDLAVVAGLADRIAVMYAGR 235
Cdd:cd03225 139 QKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
8-253 |
3.45e-47 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 158.82 E-value: 3.45e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFFTRagVVkaVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPgriVEGAILFDGEDLRQADAKRW 87
Cdd:cd03261 1 IELRGLTKSFGGR--TV--LKGVDLDVRRGEILAIIGPSGSGKS-TLLRLIVGLLRP---DSGEVLIDGEDISGLSEAEL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 88 RALRgEEMAMIFQ-----DPMMTLNPV---LRVDTQMVETVLAhhdvsrsqamARALEVLTMVGIPsPRERLraYPHELS 159
Cdd:cd03261 73 YRLR-RRMGMLFQsgalfDSLTVFENVafpLREHTRLSEEEIR----------EIVLEKLEAVGLR-GAEDL--YPAELS 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 160 GGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVET 239
Cdd:cd03261 139 GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAE 218
|
250
....*....|....
gi 1806544180 240 GTSKDVIGHAlHPY 253
Cdd:cd03261 219 GTPEELRASD-DPL 231
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
5-242 |
8.76e-46 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 155.28 E-value: 8.76e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 5 APVLDVRNLKTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGL---LDEPGrivEGAILFDGEDLRQ 81
Cdd:COG4181 6 APIIELRGLTKTVGTGAGELTILKGISLEVEAGESVAIVGASGSGKS----TLLGLlagLDRPT---SGTVRLAGQDLFA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 82 ADAKRWRALRGEEMAMIFQD----PMMTlnpvlrvdtqMVETV-----LAhhdvSRSQAMARALEVLTMVGIpspRERLR 152
Cdd:COG4181 79 LDEDARARLRARHVGFVFQSfqllPTLT----------ALENVmlpleLA----GRRDARARARALLERVGL---GHRLD 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 153 AYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAvVAGLADRIAVMY 232
Cdd:COG4181 142 HYPAQLSGGEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPA-LAARCDRVLRLR 220
|
250
....*....|
gi 1806544180 233 AGRIVETGTS 242
Cdd:COG4181 221 AGRLVEDTAA 230
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
18-248 |
1.24e-45 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 155.15 E-value: 1.24e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 18 FTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPgriVEGAILFDGEDLRQADAKRWRALRGEEMAM 97
Cdd:cd03295 8 KRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKT-TTMKMINRLIEP---TSGEIFIDGEDIREQDPVELRRKIGYVIQQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 98 IFQDPMMTLnpvlrvdTQMVETVLAHHDVSRSQAMARALEVLTMVGIPsPRERLRAYPHELSGGMRQRVAIAIALLNSPR 177
Cdd:cd03295 84 IGLFPHMTV-------EENIALVPKLLKWPKEKIRERADELLALVGLD-PAEFADRYPHELSGGQQQRVGVARALAADPP 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1806544180 178 VIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDVIGH 248
Cdd:cd03295 156 LLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
5-261 |
2.02e-45 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 155.08 E-value: 2.02e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 5 APVLDVRNLkTHFFtraGVVKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDepGRIV--EGAILFDGEDLRQA 82
Cdd:PRK11701 4 QPLLSVRGL-TKLY---GPRKGCRDVSFDLYPGEVLGIVGESGSGKT----TLLNALS--ARLApdAGEVHYRMRDGQLR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 83 D------AKRWRALRGEeMAMIFQDPMMTLNPVLRVDTQMVETVLAHHDVSRSQAMARALEVLTMVGIPSprERLRAYPH 156
Cdd:PRK11701 74 DlyalseAERRRLLRTE-WGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA--ARIDDLPT 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 157 ELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRI 236
Cdd:PRK11701 151 TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRV 230
|
250 260
....*....|....*....|....*
gi 1806544180 237 VETGTSKDVIGHALHPYTLGLMASI 261
Cdd:PRK11701 231 VESGLTDQVLDDPQHPYTQLLVSSV 255
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
11-254 |
4.46e-45 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 156.50 E-value: 4.46e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 11 RNLKTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPgriVEGAILFDGEDLRQADAKRWRAL 90
Cdd:PRK11153 5 KNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKS-TLIRCINLLERP---TSGRVLVDGQDLTALSEKELRKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 91 RgEEMAMIFQDpmmtLNpVLRVDTqMVETV-----LAHhdVSRSQAMARALEVLTMVGIPSPRERlraYPHELSGGMRQR 165
Cdd:PRK11153 81 R-RQIGMIFQH----FN-LLSSRT-VFDNValpleLAG--TPKAEIKARVTELLELVGLSDKADR---YPAQLSGGQKQR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 166 VAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDV 245
Cdd:PRK11153 149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEV 228
|
....*....
gi 1806544180 246 IGHALHPYT 254
Cdd:PRK11153 229 FSHPKHPLT 237
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
7-252 |
6.29e-45 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 153.23 E-value: 6.29e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 7 VLDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPgriVEGAILFDGEDLrQADAKR 86
Cdd:COG1126 1 MIEIENLHKSF----GDLEVLKGISLDVEKGEVVVIIGPSGSGKS-TLLRCINLLEEP---DSGTITVDGEDL-TDSKKD 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 87 WRALRgEEMAMIFQD----PMMTlnpVLrvdtqmvETV-LA---HHDVSRSQAMARALEVLTMVGIPsprERLRAYPHEL 158
Cdd:COG1126 72 INKLR-RKVGMVFQQfnlfPHLT---VL-------ENVtLApikVKKMSKAEAEERAMELLERVGLA---DKADAYPAQL 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 159 SGGMRQRVAIAIALLNSPRVIIADEPTTALD---VTiqaqilyEV----RRLCREtGTALIWITHDLAVVAGLADRIAVM 231
Cdd:COG1126 138 SGGQQQRVAIARALAMEPKVMLFDEPTSALDpelVG-------EVldvmRDLAKE-GMTMVVVTHEMGFAREVADRVVFM 209
|
250 260
....*....|....*....|.
gi 1806544180 232 YAGRIVETGTSKDVIGHALHP 252
Cdd:COG1126 210 DGGRIVEEGPPEEFFENPQHE 230
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
6-245 |
5.66e-43 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 148.28 E-value: 5.66e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 6 PVLDVRNLKTHFftrAGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPgriVEGAILFDGEDLRQADAK 85
Cdd:COG3638 1 PMLELRNLSKRY---PGGTPALDDVSLEIERGEFVALIGPSGAGKS-TLLRCLNGLVEP---TSGEILVDGQDVTALRGR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 86 RWRALRGEeMAMIFQDPmmTLNPVLRVdtqmVETVLA----HHDVSRS-------QAMARALEVLTMVGIpSPRERLRAy 154
Cdd:COG3638 74 ALRRLRRR-IGMIFQQF--NLVPRLSV----LTNVLAgrlgRTSTWRSllglfppEDRERALEALERVGL-ADKAYQRA- 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 155 pHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAG 234
Cdd:COG3638 145 -DQLSGGQQQRVAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIGLRDG 223
|
250
....*....|.
gi 1806544180 235 RIVETGTSKDV 245
Cdd:COG3638 224 RVVFDGPPAEL 234
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
6-265 |
8.54e-43 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 148.68 E-value: 8.54e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 6 PVLDVRNL----KTHFFTRAGVVKAV-DGVDLYLRQGEILGLVGESGSGKSITGFSLMGLlDEPgriVEGAILFDGEDLR 80
Cdd:PRK10419 2 TLLNVSGLshhyAHGGLSGKHQHQTVlNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL-ESP---SQGNVSWRGEPLA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 81 QADAKRWRALRGEeMAMIFQDPMMTLNPVLRVDTQMVETVLAHHDVSRSQAMARALEVLTMVGIPSprERLRAYPHELSG 160
Cdd:PRK10419 78 KLNRAQRKAFRRD-IQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD--SVLDKRPPQLSG 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 161 GMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETG 240
Cdd:PRK10419 155 GQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQ 234
|
250 260
....*....|....*....|....*...
gi 1806544180 241 TskdvIGHAL---HPYTLGLMASIPSAR 265
Cdd:PRK10419 235 P----VGDKLtfsSPAGRVLQNAVLPAF 258
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
8-251 |
8.89e-43 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 147.71 E-value: 8.89e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFftrAGVVKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQADAKRW 87
Cdd:cd03256 1 IEVENLSKTY---PNGKKALKDVSLSINPGEFVALIGPSGAGKS----TLLRCLNGLVEPTSGSVLIDGTDINKLKGKAL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 88 RALRGEeMAMIFQDpmmtLNPVLRVDtqMVETVL----AHHDVSRS-------QAMARALEVLTMVGIpSPRERLRAypH 156
Cdd:cd03256 74 RQLRRQ-IGMIFQQ----FNLIERLS--VLENVLsgrlGRRSTWRSlfglfpkEEKQRALAALERVGL-LDKAYQRA--D 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 157 ELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRI 236
Cdd:cd03256 144 QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRI 223
|
250
....*....|....*
gi 1806544180 237 VETGTSKDVIGHALH 251
Cdd:cd03256 224 VFDGPPAELTDEVLD 238
|
|
| LolD_lipo_ex |
TIGR02211 |
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ... |
7-238 |
1.02e-42 |
|
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131266 [Multi-domain] Cd Length: 221 Bit Score: 146.73 E-value: 1.02e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 7 VLDVRNLKTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPgriVEGAILFDGEDLRQADAKR 86
Cdd:TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKS-TLLHLLGGLDNP---TSGEVLFNGQSLSKLSSNE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 87 WRALRGEEMAMIFQ-DPMMTLNPVLrvDTQMVETVLAHHdvSRSQAMARALEVLTMVGIpspRERLRAYPHELSGGMRQR 165
Cdd:TIGR02211 77 RAKLRNKKLGFIYQfHHLLPDFTAL--ENVAMPLLIGKK--SVKEAKERAYEMLEKVGL---EHRINHRPSELSGGERQR 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1806544180 166 VAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAvVAGLADRIAVMYAGRIVE 238
Cdd:TIGR02211 150 VAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LAKKLDRVLEMKDGQLFN 221
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
22-238 |
1.13e-41 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 144.04 E-value: 1.13e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 22 GVVKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLL--DEpgRIVEGAILFDGEDLRQADAKRWRALRgEEMAMIF 99
Cdd:COG2884 13 GGREALSDVSLEIEKGEFVFLTGPSGAGKS----TLLKLLygEE--RPTSGQVLVNGQDLSRLKRREIPYLR-RRIGVVF 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 100 QD----PMMTL--NpvlrvdtqmVETVLAHHDVSRSQAMARALEVLTMVGIpspRERLRAYPHELSGGMRQRVAIAIALL 173
Cdd:COG2884 86 QDfrllPDRTVyeN---------VALPLRVTGKSRKEIRRRVREVLDLVGL---SDKAKALPHELSGGEQQRVAIARALV 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1806544180 174 NSPRVIIADEPTTALDVTIQAQILYEVRRLCReTGTALIWITHDLAVVAGLADRIAVMYAGRIVE 238
Cdd:COG2884 154 NRPELLLADEPTGNLDPETSWEIMELLEEINR-RGTTVLIATHDLELVDRMPKRVLELEDGRLVR 217
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
8-245 |
1.95e-41 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 143.86 E-value: 1.95e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLkTHFFtraGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLD-EPGRIVEGAILFDGEDLRQADAKR 86
Cdd:cd03260 1 IELRDL-NVYY---GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDlIPGAPDEGEVLLDGKDIYDLDVDV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 87 wRALRgEEMAMIFQDPMMTLNPVLRvdtqMVETVLAHHDVSRSQAM-ARALEVLTMVGIPsPRERLRAYPHELSGGMRQR 165
Cdd:cd03260 77 -LELR-RRVGMVFQKPNPFPGSIYD----NVAYGLRLHGIKLKEELdERVEEALRKAALW-DEVKDRLHALGLSGGQQQR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 166 VAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCREtgTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDV 245
Cdd:cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
8-245 |
2.06e-40 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 141.22 E-value: 2.06e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKS-----ITGFslmgllDEPGrivEGAILFDGEDLRQA 82
Cdd:cd03300 1 IELENVSKFY----GGFVALDGVSLDIKEGEFFTLLGPSGCGKTtllrlIAGF------ETPT---SGEILLDGKDITNL 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 83 DA-KRwralrgeEMAMIFQDpmMTLNPVLRVdTQMVETVLAHHDVSRSQAMARALEVLTMVGIPSPRERlraYPHELSGG 161
Cdd:cd03300 68 PPhKR-------PVNTVFQN--YALFPHLTV-FENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANR---KPSQLSGG 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 162 MRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGT 241
Cdd:cd03300 135 QQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214
|
....
gi 1806544180 242 SKDV 245
Cdd:cd03300 215 PEEI 218
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
7-260 |
2.55e-40 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 142.24 E-value: 2.55e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 7 VLDVRNLKTHFFTRAGV-----VKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdEPgriVEGAILFDGEDLRQ 81
Cdd:PRK15112 4 LLEVRNLSKTFRYRTGWfrrqtVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI-EP---TSGELLIDDHPLHF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 82 ADAkRWRALRgeeMAMIFQDPMMTLNPVLRVDTQMVETVLAHHDVSRSQAMARALEVLTMVGIPspRERLRAYPHELSGG 161
Cdd:PRK15112 80 GDY-SYRSQR---IRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLL--PDHASYYPHMLAPG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 162 MRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGT 241
Cdd:PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233
|
250
....*....|....*....
gi 1806544180 242 SKDVIGHALHPYTLGLMAS 260
Cdd:PRK15112 234 TADVLASPLHELTKRLIAG 252
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
5-261 |
4.52e-40 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 141.12 E-value: 4.52e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 5 APVLDVRNLkTHFFtraGVVKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGED------ 78
Cdd:TIGR02323 1 KPLLQVSGL-SKSY---GGGKGCRDVSFDLYPGEVLGIVGESGSGKS----TLLGCLAGRLAPDHGTATYIMRSgaelel 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 79 LRQADAKRWRALRgEEMAMIFQDPMMTLNPVLRVDTQMVETVLAHHDVSRSQAMARALEVLTMVGIPspRERLRAYPHEL 158
Cdd:TIGR02323 73 YQLSEAERRRLMR-TEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEID--PTRIDDLPRAF 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 159 SGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVE 238
Cdd:TIGR02323 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE 229
|
250 260
....*....|....*....|...
gi 1806544180 239 TGTSKDVIGHALHPYTLGLMASI 261
Cdd:TIGR02323 230 SGLTDQVLDDPQHPYTQLLVSSI 252
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
7-245 |
4.90e-40 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 140.38 E-value: 4.90e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 7 VLDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDePGRiveGAILFDGEDLRqadaKR 86
Cdd:COG4555 1 MIEVENLSKKY----GKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLK-PDS---GSILIDGEDVR----KE 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 87 WRALRgEEMAMIFQDPMMTLNPVLRvdtQMVETVLAHHDVSRSQAMARALEVLTMVGIPSPRERlRAypHELSGGMRQRV 166
Cdd:COG4555 69 PREAR-RQIGVLPDERGLYDRLTVR---ENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDR-RV--GELSTGMKKKV 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1806544180 167 AIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLcRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDV 245
Cdd:COG4555 142 ALARALVHDPKVLLLDEPTNGLDVMARRLLREILRAL-KKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDEL 219
|
|
| proV |
TIGR01186 |
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine ... |
22-246 |
5.28e-40 |
|
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130254 [Multi-domain] Cd Length: 363 Bit Score: 143.84 E-value: 5.28e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 22 GVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPGRiveGAILFDGEDLRQADAKRWRALRGEEMAMIFQD 101
Cdd:TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKS-TTVRMLNRLIEPTA---GQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 102 ----PMMTLnpvlrvdTQMVETVLAHHDVSRSQAMARALEVLTMVGIPsprERLRAYPHELSGGMRQRVAIAIALLNSPR 177
Cdd:TIGR01186 80 falfPHMTI-------LQNTSLGPELLGWPEQERKEKALELLKLVGLE---EYEHRYPDELSGGMQQRVGLARALAAEPD 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1806544180 178 VIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDVI 246
Cdd:TIGR01186 150 ILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
8-236 |
1.35e-39 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 138.43 E-value: 1.35e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPGrivEGAILFDGEDLrQADAKRW 87
Cdd:cd03262 1 IEIKNLHKSF----GDFHVLKGIDLTVKKGEVVVIIGPSGSGKS-TLLRCINLLEEPD---SGTIIIDGLKL-TDDKKNI 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 88 RALRgEEMAMIFQD----PMMTlnpVLrvDTQMVETVLAHHdVSRSQAMARALEVLTMVGIPsprERLRAYPHELSGGMR 163
Cdd:cd03262 72 NELR-QKVGMVFQQfnlfPHLT---VL--ENITLAPIKVKG-MSKAEAEERALELLEKVGLA---DKADAYPAQLSGGQQ 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1806544180 164 QRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCREtGTALIWITHDLAVVAGLADRIAVMYAGRI 236
Cdd:cd03262 142 QRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
8-248 |
2.82e-39 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 138.34 E-value: 2.82e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKS-----ITGFSlmglldepgRIVEGAILFDGEDLRQA 82
Cdd:cd03219 1 LEVRGLTKRF----GGLVALDDVSFSVRPGEIHGLIGPNGAGKTtlfnlISGFL---------RPTSGSVLFDGEDITGL 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 83 DAKRwRALRGeeMAMIFQDP-----MMTL-NPVLRVDTQMVETVLAHHDV-SRSQAMARALEVLTMVGIpspRERLRAYP 155
Cdd:cd03219 68 PPHE-IARLG--IGRTFQIPrlfpeLTVLeNVMVAAQARTGSGLLLARARrEEREARERAEELLERVGL---ADLADRPA 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 156 HELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLcRETGTALIWITHDLAVVAGLADRIAVMYAGR 235
Cdd:cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIREL-RERGITVLLVEHDMDVVMSLADRVTVLDQGR 220
|
250
....*....|...
gi 1806544180 236 IVETGTSKDVIGH 248
Cdd:cd03219 221 VIAEGTPDEVRNN 233
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
8-235 |
4.16e-39 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 136.16 E-value: 4.16e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLrQADAKRW 87
Cdd:cd03229 1 LELKNVSKRY----GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE----EPDSGSILIDGEDL-TDLEDEL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 88 RALRgEEMAMIFQDPmmTLNPvlrvdtqmvetvlahHdvsrsqamaraLEVLTMVGIPsprerlraypheLSGGMRQRVA 167
Cdd:cd03229 72 PPLR-RRIGMVFQDF--ALFP---------------H-----------LTVLENIALG------------LSGGQQQRVA 110
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1806544180 168 IAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGR 235
Cdd:cd03229 111 LARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
7-250 |
4.33e-39 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 138.20 E-value: 4.33e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 7 VLDVRNLKTHFftrAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDepgrIVEGAILFDGEDLRQADAKR 86
Cdd:TIGR02315 1 MLEVENLSKVY---PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE----PSSGSILLEGTDITKLRGKK 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 87 WRALRgEEMAMIFQDpmmtLNPVLRVDtqMVETVL----AHHDVSRS-------QAMARALEVLTMVGIpSPRERLRAyp 155
Cdd:TIGR02315 74 LRKLR-RRIGMIFQH----YNLIERLT--VLENVLhgrlGYKPTWRSllgrfseEDKERALSALERVGL-ADKAYQRA-- 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 156 HELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETG-TALIWItHDLAVVAGLADRIAVMYAG 234
Cdd:TIGR02315 144 DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGiTVIINL-HQVDLAKKYADRIVGLKAG 222
|
250
....*....|....*.
gi 1806544180 235 RIVETGTSKDVIGHAL 250
Cdd:TIGR02315 223 EIVFDGAPSELDDEVL 238
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
24-248 |
4.40e-39 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 138.72 E-value: 4.40e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 24 VKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdEPgriVEGAILFDGEDLRqaDAKRWRALRgEEMAMIFQDPm 103
Cdd:TIGR04520 15 KPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLL-LP---TSGKVTVDGLDTL--DEENLWEIR-KKVGMVFQNP- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 104 mtlnpvlrvDTQMVETV--------LAHHDVSRSQAMARALEVLTMVGIPSPRERlraYPHELSGGMRQRVAIAIALLNS 175
Cdd:TIGR04520 87 ---------DNQFVGATveddvafgLENLGVPREEMRKRVDEALKLVGMEDFRDR---EPHLLSGGQKQRVAIAGVLAMR 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1806544180 176 PRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAgLADRIAVMYAGRIVETGTSKDVIGH 248
Cdd:TIGR04520 155 PDIIILDEATSMLDPKGRKEVLETIRKLNKEEGITVISITHDMEEAV-LADRVIVMNKGKIVAEGTPREIFSQ 226
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
8-245 |
1.26e-38 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 139.82 E-value: 1.26e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDepgrIVEGAILFDGEDLRQADAKRw 87
Cdd:COG3839 4 LELENVSKSY----GGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLED----PTSGEILIGGRDVTDLPPKD- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 88 ralRGeeMAMIFQD----PMMTlnpV-------LRVdtqmvetvlahHDVSRSQAMARALEVLTMVGIpspRERLRAYPH 156
Cdd:COG3839 75 ---RN--IAMVFQSyalyPHMT---VyeniafpLKL-----------RKVPKAEIDRRVREAAELLGL---EDLLDRKPK 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 157 ELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRI 236
Cdd:COG3839 133 QLSGGQRQRVALGRALVREPKVFLLDEPLSNLDAKLRVEMRAEIKRLHRRLGTTTIYVTHDQVEAMTLADRIAVMNDGRI 212
|
....*....
gi 1806544180 237 VETGTSKDV 245
Cdd:COG3839 213 QQVGTPEEL 221
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
8-236 |
1.28e-38 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 134.45 E-value: 1.28e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRqadaKRW 87
Cdd:cd03230 1 IEVRNLSKRY----GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL----KPDSGEIKVLGKDIK----KEP 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 88 RALRgEEMAMIFQDPMmtLNPVLRVdtqmvetvlahhdvsrsqamaraLEVLtmvgipsprerlrayphELSGGMRQRVA 167
Cdd:cd03230 69 EEVK-RRIGYLPEEPS--LYENLTV-----------------------RENL-----------------KLSGGMKQRLA 105
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1806544180 168 IAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIwITHDLAVVAGLADRIAVMYAGRI 236
Cdd:cd03230 106 LAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILL-SSHILEEAERLCDRVAILNNGRI 173
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
8-236 |
1.75e-38 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 135.33 E-value: 1.75e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKThfftRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPgriVEGAILFDGEDLRQADAKRW 87
Cdd:COG4619 1 LELEGLSF----RVGGKPILSPVSLTLEAGECVAITGPSGSGKS-TLLRALADLDPP---TSGEIYLDGKPLSAMPPPEW 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 88 RAlrgeEMAMIFQDPMMTLnpvlrvdtqmvETVLAH-----HDVSRSQAMARALEVLTMVGIPSprERLRAYPHELSGGM 162
Cdd:COG4619 73 RR----QVAYVPQEPALWG-----------GTVRDNlpfpfQLRERKFDRERALELLERLGLPP--DILDKPVERLSGGE 135
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1806544180 163 RQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRI 236
Cdd:COG4619 136 RQRLALIRALLLQPDVLLLDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
5-245 |
4.61e-38 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 135.94 E-value: 4.61e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 5 APVLDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKS-----ITGFSlmglldepgRIVEGAILFDGEDL 79
Cdd:COG0411 2 DPLLEVRGLTKRF----GGLVAVDDVSLEVERGEIVGLIGPNGAGKTtlfnlITGFY---------RPTSGRILFDGRDI 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 80 RQADAKRwRALRGeeMAMIFQDPM----MTlnpVL---------RVDTQMVETVLAHHDVSRS--QAMARALEVLTMVGI 144
Cdd:COG0411 69 TGLPPHR-IARLG--IARTFQNPRlfpeLT---VLenvlvaahaRLGRGLLAALLRLPRARREerEARERAEELLERVGL 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 145 pspRERLRAYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGL 224
Cdd:COG0411 143 ---ADRADEPAGNLSYGQQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGL 219
|
250 260
....*....|....*....|.
gi 1806544180 225 ADRIAVMYAGRIVETGTSKDV 245
Cdd:COG0411 220 ADRIVVLDFGRVIAEGTPAEV 240
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
27-246 |
7.54e-38 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 135.17 E-value: 7.54e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 27 VDGVDLYLRQGEILGLVGESGSGKSitgfSLM----GLLdepgRIVEGAILFDGEDLRQADAKRwRALRgeeMAMIFQDP 102
Cdd:COG1120 17 LDDVSLSLPPGEVTALLGPNGSGKS----TLLralaGLL----KPSSGEVLLDGRDLASLSRRE-LARR---IAYVPQEP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 103 MMTLNpvLRVdtqmVETVL----AHHDVSRS---QAMARALEVLTMVGIPSPRERlraYPHELSGGMRQRVAIAIALLNS 175
Cdd:COG1120 85 PAPFG--LTV----RELVAlgryPHLGLFGRpsaEDREAVEEALERTGLEHLADR---PVDELSGGERQRVLIARALAQE 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1806544180 176 PRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDVI 246
Cdd:COG1120 156 PPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVL 226
|
|
| heterocyst_DevA |
TIGR02982 |
ABC exporter ATP-binding subunit, DevA family; Members of this protein family are found mostly ... |
7-237 |
7.61e-38 |
|
ABC exporter ATP-binding subunit, DevA family; Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Pssm-ID: 274374 [Multi-domain] Cd Length: 220 Bit Score: 133.99 E-value: 7.61e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 7 VLDVRNLkTHFFTRAGVVKAV-DGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLdepgRIV-EGAILFDGEDLRQADA 84
Cdd:TIGR02982 1 VISIRNL-NHYYGHGSLRKQVlFDINLEINPGEIVILTGPSGSGKT-TLLTLIGGL----RSVqEGSLKVLGQELHGASK 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 85 KRWRALRgEEMAMIFQD----PMMTLnpvlRVDTQMveTVLAHHDVSRSQAMARALEVLTMVGIpspRERLRAYPHELSG 160
Cdd:TIGR02982 75 KQLVQLR-RRIGYIFQAhnllGFLTA----RQNVQM--ALELQPNLSYQEARERARAMLEAVGL---GDHLNYYPHNLSG 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1806544180 161 GMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVaGLADRIAVMYAGRIV 237
Cdd:TIGR02982 145 GQKQRVAIARALVHHPKLVLADEPTAALDSKSGRDVVELMQKLAKEQGCTILMVTHDNRIL-DVADRILQMEDGKLL 220
|
|
| ProV |
COG4175 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
18-248 |
1.65e-37 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443334 [Multi-domain] Cd Length: 389 Bit Score: 137.54 E-value: 1.65e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 18 FTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKS-----ITGfslmglLDEPgriVEGAILFDGEDLRQADAKRWRALRG 92
Cdd:COG4175 34 LEKTGQTVGVNDASFDVEEGEIFVIMGLSGSGKStlvrcLNR------LIEP---TAGEVLIDGEDITKLSKKELRELRR 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 93 EEMAMIFQD----PMMTlnpVLrvdtQMVETVLAHHDVSRSQAMARALEVLTMVGIpSPRERlrAYPHELSGGMRQRVAI 168
Cdd:COG4175 105 KKMSMVFQHfallPHRT---VL----ENVAFGLEIQGVPKAERRERAREALELVGL-AGWED--SYPDELSGGMQQRVGL 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 169 AIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDL--AVvaGLADRIAVMYAGRIVETGTSKDVI 246
Cdd:COG4175 175 ARALATDPDILLMDEAFSALDPLIRREMQDELLELQAKLKKTIVFITHDLdeAL--RLGDRIAIMKDGRIVQIGTPEEIL 252
|
..
gi 1806544180 247 GH 248
Cdd:COG4175 253 TN 254
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
8-245 |
2.88e-37 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 136.04 E-value: 2.88e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKS-----ITGfslmglLDEPGRiveGAILFDGEDLrqa 82
Cdd:COG1118 3 IEVRNISKRF----GSFTLLDDVSLEIASGELVALLGPSGSGKTtllriIAG------LETPDS---GRIVLNGRDL--- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 83 daKRWRALRGEEMAMIFQDPM----MTlnpVLrvdtQMVETVLAHHDVSRSQAMARALEVLTMVGIPSPRERlraYPHEL 158
Cdd:COG1118 67 --FTNLPPRERRVGFVFQHYAlfphMT---VA----ENIAFGLRVRPPSKAEIRARVEELLELVQLEGLADR---YPSQL 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 159 SGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVE 238
Cdd:COG1118 135 SGGQRQRVALARALAVEPEVLLLDEPFGALDAKVRKELRRWLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQ 214
|
....*..
gi 1806544180 239 TGTSKDV 245
Cdd:COG1118 215 VGTPDEV 221
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
27-186 |
5.32e-37 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 129.69 E-value: 5.32e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 27 VDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEpgriVEGAILFDGEDLRQADAKRWRAlrgeEMAMIFQDPmmTL 106
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSP----TEGTILLDGQDLTDDERKSLRK----EIGYVFQDP--QL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 107 NPVLRVDTQMVEtVLAHHDVSRSQAMARALEVLTMVGIPSPRER-LRAYPHELSGGMRQRVAIAIALLNSPRVIIADEPT 185
Cdd:pfam00005 71 FPRLTVRENLRL-GLLLKGLSKREKDARAEEALEKLGLGDLADRpVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPT 149
|
.
gi 1806544180 186 T 186
Cdd:pfam00005 150 A 150
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
8-254 |
9.34e-37 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 132.18 E-value: 9.34e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFFTRAgvvkAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEP--GRIVEGAILFDGEDLRQADAK 85
Cdd:PRK11264 4 IEVKNLVKKFHGQT----VLHGIDLEVKPGEVVAIIGPSGSGKT-TLLRCINLLEQPeaGTIRVGDITIDTARSLSQQKG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 86 RWRALRgEEMAMIFQDpmMTLNPVLRVDTQMVETVLAHHDVSRSQAMARALEVLTMVGIpSPRERlrAYPHELSGGMRQR 165
Cdd:PRK11264 79 LIRQLR-QHVGFVFQN--FNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGL-AGKET--SYPRRLSGGQQQR 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 166 VAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIwITHDLAVVAGLADRIAVMYAGRIVETGTSKDV 245
Cdd:PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVI-VTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231
|
....*....
gi 1806544180 246 IGHALHPYT 254
Cdd:PRK11264 232 FADPQQPRT 240
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
20-235 |
1.86e-36 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 128.52 E-value: 1.86e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 20 RAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRQADAKRWRalrgEEMAMIF 99
Cdd:cd00267 8 RYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLPLEELR----RRIGYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 100 QdpmmtlnpvlrvdtqmvetvlahhdvsrsqamaralevltmvgipsprerlraypheLSGGMRQRVAIAIALLNSPRVI 179
Cdd:cd00267 80 Q---------------------------------------------------------LSGGQRQRVALARALLLNPDLL 102
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1806544180 180 IADEPTTALDVTIQAQILYEVRRLCREtGTALIWITHDLAVVAGLADRIAVMYAGR 235
Cdd:cd00267 103 LLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
5-245 |
2.79e-36 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 136.30 E-value: 2.79e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 5 APVLDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTgfsLMGLLD---EPGrivEGAILFDGEDLRQ 81
Cdd:COG1129 2 EPLLEMRGISKSF----GGVKALDGVSLELRPGEVHALLGENGAGKS-T---LMKILSgvyQPD---SGEILLDGEPVRF 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 82 ADAKRWRALRgeeMAMIFQDPMmtLNPVLRVdtqmVETVLAHHD------VSRSQAMARALEVLTMVGIP-SPRERLRay 154
Cdd:COG1129 71 RSPRDAQAAG---IAIIHQELN--LVPNLSV----AENIFLGREprrgglIDWRAMRRRARELLARLGLDiDPDTPVG-- 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 155 phELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTiQAQILYE-VRRLcRETGTALIWITHDLAVVAGLADRIAVMYA 233
Cdd:COG1129 140 --DLSVAQQQLVEIARALSRDARVLILDEPTASLTER-EVERLFRiIRRL-KAQGVAIIYISHRLDEVFEIADRVTVLRD 215
|
250
....*....|..
gi 1806544180 234 GRIVETGTSKDV 245
Cdd:COG1129 216 GRLVGTGPVAEL 227
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
8-249 |
2.97e-36 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 130.53 E-value: 2.97e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLK---THFFtragvvkaVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdEPGRiveGAILFDGEDLRQADA 84
Cdd:cd03299 1 LKVENLSkdwKEFK--------LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFI-KPDS---GKILLNGKDITNLPP 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 85 KRwralrgEEMAMIFQD----PMMTLnpvlrvdTQMVETVLAHHDVSRSQAMARALEVLTMVGIpspRERLRAYPHELSG 160
Cdd:cd03299 69 EK------RDISYVPQNyalfPHMTV-------YKNIAYGLKKRKVDKKEIERKVLEIAEMLGI---DHLLNRKPETLSG 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 161 GMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETG 240
Cdd:cd03299 133 GEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVG 212
|
....*....
gi 1806544180 241 TSKDVIGHA 249
Cdd:cd03299 213 KPEEVFKKP 221
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
20-240 |
1.90e-35 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 127.76 E-value: 1.90e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 20 RAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDepgrIVEGAILFDGEDLRQADAKRwralRGeeMAMIF 99
Cdd:cd03301 9 RFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE----PTSGRIYIGGRDVTDLPPKD----RD--IAMVF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 100 QDpmMTLNPVLRVDTQMvETVLAHHDVSRSQAMARALEVLTMVGIpspRERLRAYPHELSGGMRQRVAIAIALLNSPRVI 179
Cdd:cd03301 79 QN--YALYPHMTVYDNI-AFGLKLRKVPKDEIDERVREVAELLQI---EHLLDRKPKQLSGGQRQRVALGRAIVREPKVF 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1806544180 180 IADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETG 240
Cdd:cd03301 153 LMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
3-248 |
3.37e-35 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 134.12 E-value: 3.37e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 3 DKAPVLDVRNLKthfFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLdePGRIV--EGAILFDGEDLR 80
Cdd:COG4988 332 AGPPSIELEDVS---FSYPGGRPALDGLSLTIPPGERVALVGPSGAGKS----TLLNLL--LGFLPpySGSILINGVDLS 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 81 QADAKRWRALrgeeMAMIFQDPMM---TLNPVLRvdtqmvetvLAHHDVSRsQAMARALEvltMVGIpspRERLRAYPHE 157
Cdd:COG4988 403 DLDPASWRRQ----IAWVPQNPYLfagTIRENLR---------LGRPDASD-EELEAALE---AAGL---DEFVAALPDG 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 158 -----------LSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRetGTALIWITHDLAVVAgLAD 226
Cdd:COG4988 463 ldtplgeggrgLSGGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAK--GRTVILITHRLALLA-QAD 539
|
250 260
....*....|....*....|..
gi 1806544180 227 RIAVMYAGRIVETGTSKDVIGH 248
Cdd:COG4988 540 RILVLDDGRIVEQGTHEELLAK 561
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
4-247 |
6.77e-35 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 133.00 E-value: 6.77e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 4 KAPVLDVRNLKTHFFT-RAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdEPgriVEGAILFD-GED--- 78
Cdd:TIGR03269 276 GEPIIKVRNVSKRYISvDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVL-EP---TSGEVNVRvGDEwvd 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 79 -LRQADAKRWRALRgeEMAMIFQDpmMTLNPVLRVDTQMVETVlaHHDVSRSQAMARALEVLTMVGIPS--PRERLRAYP 155
Cdd:TIGR03269 352 mTKPGPDGRGRAKR--YIGILHQE--YDLYPHRTVLDNLTEAI--GLELPDELARMKAVITLKMVGFDEekAEEILDKYP 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 156 HELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGR 235
Cdd:TIGR03269 426 DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGK 505
|
250
....*....|..
gi 1806544180 236 IVETGTSKDVIG 247
Cdd:TIGR03269 506 IVKIGDPEEIVE 517
|
|
| OpuBA |
COG1125 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
21-248 |
9.33e-35 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440742 [Multi-domain] Cd Length: 306 Bit Score: 128.28 E-value: 9.33e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 21 AGVVKAVDGVDLYLRQGEILGLVGESGSGKSITgfslmgL-----LDEPGrivEGAILFDGEDLRQADAKRWRalRGeeM 95
Cdd:COG1125 12 PDGTVAVDDLSLTIPAGEFTVLVGPSGCGKTTT------LrminrLIEPT---SGRILIDGEDIRDLDPVELR--RR--I 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 96 AMIFQD----PMMTlnpVLrvdtQMVETVLAHHDVSRSQAMARALEVLTMVGIPsPRERLRAYPHELSGGMRQRVAIAIA 171
Cdd:COG1125 79 GYVIQQiglfPHMT---VA----ENIATVPRLLGWDKERIRARVDELLELVGLD-PEEYRDRYPHELSGGQQQRVGVARA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1806544180 172 LLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDL--AVVagLADRIAVMYAGRIVETGTSKDVIGH 248
Cdd:COG1125 151 LAADPPILLMDEPFGALDPITREQLQDELLRLQRELGKTIVFVTHDIdeALK--LGDRIAVMREGRIVQYDTPEEILAN 227
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
26-255 |
9.65e-35 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 133.81 E-value: 9.65e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 26 AVDGVDLYLRQGEILGLVGESGSGKSiTGFSLM-GLLdEPgriVEGAILFDGEDLRQADAKRWRALrgeeMAMIFQDPMM 104
Cdd:COG2274 490 VLDNISLTIKPGERVAIVGRSGSGKS-TLLKLLlGLY-EP---TSGRILIDGIDLRQIDPASLRRQ----IGVVLQDVFL 560
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 105 ---TL-------NPvlRVDTQMVETVL----AHHDVsrsQAMARALEvlTMVGipsprERLRAypheLSGGMRQRVAIAI 170
Cdd:COG2274 561 fsgTIrenitlgDP--DATDEEIIEAArlagLHDFI---EALPMGYD--TVVG-----EGGSN----LSGGQRQRLAIAR 624
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 171 ALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRetGTALIWITHDLAVVAgLADRIAVMYAGRIVETGTSKDVIGHAL 250
Cdd:COG2274 625 ALLRNPRILILDEATSALDAETEAIILENLRRLLK--GRTVIIIAHRLSTIR-LADRIIVLDKGRIVEDGTHEELLARKG 701
|
....*
gi 1806544180 251 HPYTL 255
Cdd:COG2274 702 LYAEL 706
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
11-246 |
5.05e-34 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 124.82 E-value: 5.05e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 11 RNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEpgrIVEGAILFDGEDLRQADAKRwRAL 90
Cdd:PRK09493 5 KNVSKHF----GPTQVLHNIDLNIDQGEVVVIIGPSGSGKS-TLLRCINKLEE---ITSGDLIVDGLKVNDPKVDE-RLI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 91 RgEEMAMIFQD----PMMT-LNPVLRVDTQMvetvlahHDVSRSQAMARALEVLTMVGIpspRERLRAYPHELSGGMRQR 165
Cdd:PRK09493 76 R-QEAGMVFQQfylfPHLTaLENVMFGPLRV-------RGASKEEAEKQARELLAKVGL---AERAHHYPSELSGGQQQR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 166 VAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCREtGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDV 245
Cdd:PRK09493 145 VAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223
|
.
gi 1806544180 246 I 246
Cdd:PRK09493 224 I 224
|
|
| PhnT2 |
TIGR03265 |
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ... |
5-241 |
8.85e-34 |
|
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274496 [Multi-domain] Cd Length: 353 Bit Score: 127.08 E-value: 8.85e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 5 APVLDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPGRiveGAILFDGEDL-RQAD 83
Cdd:TIGR03265 2 SPYLSIDNIRKRF----GAFTALKDISLSVKKGEFVCLLGPSGCGKT-TLLRIIAGLERQTA---GTIYQGGRDItRLPP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 84 AKRwralrgeEMAMIFQDpmMTLNPVLRVDtQMVETVLAHHDVSRSQAMARALEVLTMVGIPSPRerlRAYPHELSGGMR 163
Cdd:TIGR03265 74 QKR-------DYGIVFQS--YALFPNLTVA-DNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSE---RKYPGQLSGGQQ 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1806544180 164 QRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGT 241
Cdd:TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGT 218
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
8-235 |
9.30e-34 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 121.72 E-value: 9.30e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLktHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSL-MGLLDepgrIVEGAILFDGEDLRQADAKR 86
Cdd:cd03228 1 IEFKNV--SFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKS-TLLKLlLRLYD----PTSGEILIDGVDLRDLDLES 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 87 WRALrgeeMAMIFQDPM---MTLnpvlrvdtqmvetvlahhdvsrsqamaralevltmvgipspRERLraypheLSGGMR 163
Cdd:cd03228 74 LRKN----IAYVPQDPFlfsGTI-----------------------------------------RENI------LSGGQR 102
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1806544180 164 QRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETgTALIwITHDLAVVAgLADRIAVMYAGR 235
Cdd:cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGK-TVIV-IAHRLSTIR-DADRIIVLDDGR 171
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
22-254 |
1.20e-33 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 123.97 E-value: 1.20e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 22 GVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEP--GRIVEGAILFDGEdlRQADAKRWRALRGEeMAMIF 99
Cdd:COG4161 13 GSHQALFDINLECPSGETLVLLGPSGAGKS-SLLRVLNLLETPdsGQLNIAGHQFDFS--QKPSEKAIRLLRQK-VGMVF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 100 QDpmMTLNPVLRVDTQMVETVLAHHDVSRSQAMARALEVLTMVGIPSPRERlraYPHELSGGMRQRVAIAIALLNSPRVI 179
Cdd:COG4161 89 QQ--YNLWPHLTVMENLIEAPCKVLGLSKEQAREKAMKLLARLRLTDKADR---FPLHLSGGQQQRVAIARALMMEPQVL 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1806544180 180 IADEPTTALDVTIQAQILYEVRRLcRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKdvigHALHPYT 254
Cdd:COG4161 164 LFDEPTAALDPEITAQVVEIIREL-SQTGITQVIVTHEVEFARKVASQVVYMEKGRIIEQGDAS----HFTQPQT 233
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
10-260 |
1.21e-33 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 123.60 E-value: 1.21e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 10 VRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPGRiveGAILFDGEDLRQADAKRwra 89
Cdd:cd03296 5 VRNVSKRF----GDFVALDDVSLDIPSGELVALLGPSGSGKT-TLLRLIAGLERPDS---GTILFGGEDATDVPVQE--- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 90 lrgEEMAMIFQD----PMMTL--NPV--LRVDTqmvetvlAHHDVSRSQAMARALEVLTMVGIPSPRERlraYPHELSGG 161
Cdd:cd03296 74 ---RNVGFVFQHyalfRHMTVfdNVAfgLRVKP-------RSERPPEAEIRAKVHELLKLVQLDWLADR---YPAQLSGG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 162 MRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGT 241
Cdd:cd03296 141 QRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220
|
250
....*....|....*....
gi 1806544180 242 SKDVIGHALHPYTLGLMAS 260
Cdd:cd03296 221 PDEVYDHPASPFVYSFLGE 239
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
25-241 |
1.28e-33 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 129.90 E-value: 1.28e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 25 KAVDGVDLYLRQGEILGLVGESGSGKSiTGFSL-MGLLDepgrIVEGAILFDGEDLRQADAKRWRALrgeeMAMIFQDPM 103
Cdd:COG1132 354 PVLKDISLTIPPGETVALVGPSGSGKS-TLVNLlLRFYD----PTSGRILIDGVDIRDLTLESLRRQ----IGVVPQDTF 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 104 M---TL--NpvLRvdtqmvetvLAHHDVSRSQ-----AMARALEVL--------TMVGipsprERlrayPHELSGGMRQR 165
Cdd:COG1132 425 LfsgTIreN--IR---------YGRPDATDEEveeaaKAAQAHEFIealpdgydTVVG-----ER----GVNLSGGQRQR 484
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1806544180 166 VAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETgTALIwITHDLAVVAGlADRIAVMYAGRIVETGT 241
Cdd:COG1132 485 IAIARALLKDPPILILDEATSALDTETEALIQEALERLMKGR-TTIV-IAHRLSTIRN-ADRILVLDDGRIVEQGT 557
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
3-250 |
1.72e-33 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 124.36 E-value: 1.72e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 3 DKAPVLDVRNLkthFFTRAGVVK-AVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLD-EPGRIVEGAILFDGE--- 77
Cdd:PRK13635 1 MKEEIIRVEHI---SFRYPDAATyALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLpEAGTITVGGMVLSEEtvw 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 78 DLRqadakrwralrgEEMAMIFQDPmmtlnpvlrvDTQMV-ETV-------LAHHDVSRSQAMARALEVLTMVGIPSPRE 149
Cdd:PRK13635 78 DVR------------RQVGMVFQNP----------DNQFVgATVqddvafgLENIGVPREEMVERVDQALRQVGMEDFLN 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 150 RlraYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGlADRIA 229
Cdd:PRK13635 136 R---EPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVI 211
|
250 260
....*....|....*....|...
gi 1806544180 230 VMYAGRIVETGTSKDVI--GHAL 250
Cdd:PRK13635 212 VMNKGEILEEGTPEEIFksGHML 234
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
27-240 |
2.81e-33 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 121.00 E-value: 2.81e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 27 VDGVDLYLRQGEILGLVGESGSGKSiTGF-SLMGLLdepgRIVEGAILFDGEDLRQADAKrwralrgeEMAmifqdpmmt 105
Cdd:cd03214 15 LDDLSLSIEAGEIVGILGPNGAGKS-TLLkTLAGLL----KPSSGEILLDGKDLASLSPK--------ELA--------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 106 lnpvlrvdtQMVETVlahhdvsrSQAMARalevltmVGIPSPRERlraYPHELSGGMRQRVAIAIALLNSPRVIIADEPT 185
Cdd:cd03214 73 ---------RKIAYV--------PQALEL-------LGLAHLADR---PFNELSGGERQRVLLARALAQEPPILLLDEPT 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1806544180 186 TALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETG 240
Cdd:cd03214 126 SHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| oligo_HPY |
TIGR01727 |
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model ... |
235-319 |
3.16e-33 |
|
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model represents a domain found in the C-terminal regions of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 213647 [Multi-domain] Cd Length: 87 Bit Score: 117.85 E-value: 3.16e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 235 RIVETGTSKDVIGHALHPYTLGLMASIPSARGRGQPLAQIPGMTPSLLNLPQGCAFRQRCPRATDACLRE-PEPRETGPG 313
Cdd:TIGR01727 1 KIVETGPAEEIFKNPLHPYTKALLSAIPTIKKRDRKLISIPGEVPSLINLPSGCRFYPRCPYAQDECRKEpPALVEIAEG 80
|
....*.
gi 1806544180 314 HWVRCW 319
Cdd:TIGR01727 81 HRVACH 86
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
22-242 |
3.80e-33 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 122.43 E-value: 3.80e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 22 GVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPgRIVEGAILFDGEDLRQA-DAKRWRALRgEEMAMIFQ 100
Cdd:PRK11124 13 GAHQALFDITLDCPQGETLVLLGPSGAGKS-SLLRVLNLLEMP-RSGTLNIAGNHFDFSKTpSDKAIRELR-RNVGMVFQ 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 101 DpmMTLNPVLRVDTQMVETVLAHHDVSRSQAMARALEVLtmvgipsprERLR------AYPHELSGGMRQRVAIAIALLN 174
Cdd:PRK11124 90 Q--YNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLL---------ERLRlkpyadRFPLHLSGGQQQRVAIARALMM 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1806544180 175 SPRVIIADEPTTALDVTIQAQILYEVRRLcRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTS 242
Cdd:PRK11124 159 EPQVLLFDEPTAALDPEITAQIVSIIREL-AETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
42-261 |
5.88e-33 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 124.14 E-value: 5.88e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 42 LVGESGSGKSiTGFSLMGLLDEPGrivEGAILFDGEDLRQADAKRwralRGeeMAMIFQD----PMMTLnpvlrvdTQMV 117
Cdd:TIGR01187 1 LLGPSGCGKT-TLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHL----RH--INMVFQSyalfPHMTV-------EENV 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 118 ETVLAHHDVSRSQAMARALEVLTMVGIpspRERLRAYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQIL 197
Cdd:TIGR01187 64 AFGLKMRKVPRAEIKPRVLEALRLVQL---EEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQ 140
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1806544180 198 YEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDVIGHALHPYTLGLMASI 261
Cdd:TIGR01187 141 LELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFIGEI 204
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1-235 |
2.25e-32 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 119.85 E-value: 2.25e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 1 MTdkaPVLDVRNLKTHFF--TRAGV-VKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGE 77
Cdd:COG4778 1 MT---TLLEVENLSKTFTlhLQGGKrLPVLDGVSFSVAAGECVALTGPSGAGKS----TLLKCIYGNYLPDSGSILVRHD 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 78 ----DLRQADAKRWRALRGEEMAMIFQdpmmTLNPVLRVDT-QMVETVLAHHDVSRSQAMARALEVLTMVGIPsprERL- 151
Cdd:COG4778 74 ggwvDLAQASPREILALRRRTIGYVSQ----FLRVIPRVSAlDVVAEPLLERGVDREEARARARELLARLNLP---ERLw 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 152 RAYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQilyeVRRLCRE---TGTALIWITHDLAVVAGLADRI 228
Cdd:COG4778 147 DLPPATFSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAV----VVELIEEakaRGTAIIGIFHDEEVREAVADRV 222
|
....*..
gi 1806544180 229 AVMYAGR 235
Cdd:COG4778 223 VDVTPFS 229
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
8-239 |
4.91e-32 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 117.14 E-value: 4.91e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDepGRIV--EGAILFDGEDLRQADAK 85
Cdd:cd03216 1 LELRGITKRF----GGVKALDGVSLSVRRGEVHALLGENGAGKS----TLMKILS--GLYKpdSGEILVDGKEVSFASPR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 86 RWRALRgeeMAMIFQdpmmtlnpvlrvdtqmvetvlahhdvsrsqamaralevltmvgipsprerlraypheLSGGMRQR 165
Cdd:cd03216 71 DARRAG---IAMVYQ---------------------------------------------------------LSVGERQM 90
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1806544180 166 VAIAIALLNSPRVIIADEPTTALDVTiQAQILYEV-RRLcRETGTALIWITHDLAVVAGLADRIAVMYAGRIVET 239
Cdd:cd03216 91 VEIARALARNARLLILDEPTAALTPA-EVERLFKViRRL-RAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
10-228 |
6.24e-32 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 118.10 E-value: 6.24e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 10 VRNLKTHFFTRagvvKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPGRiveGAILFDGEDLRQADAKRWRA 89
Cdd:TIGR03608 1 LKNISKKFGDK----VILDDLNLTIEKGKMYAIIGESGSGKS-TLLNIIGLLEKFDS---GQVYLNGQETPPLNSKKASK 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 90 LRGEEMAMIFQDpmmtlnpVLRVDTQMVE----TVLAHHDVSRSQAMARALEVLTMVGIpspRERLRAYPHELSGGMRQR 165
Cdd:TIGR03608 73 FRREKLGYLFQN-------FALIENETVEenldLGLKYKKLSKKEKREKKKEALEKVGL---NLKLKQKIYELSGGEQQR 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1806544180 166 VAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLcRETGTALIWITHDLAvVAGLADRI 228
Cdd:TIGR03608 143 VALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLEL-NDEGKTIIIVTHDPE-VAKQADRV 203
|
|
| 3a0106s01 |
TIGR00968 |
sulfate ABC transporter, ATP-binding protein; [Transport and binding proteins, Anions] |
20-261 |
6.54e-32 |
|
sulfate ABC transporter, ATP-binding protein; [Transport and binding proteins, Anions]
Pssm-ID: 130041 [Multi-domain] Cd Length: 237 Bit Score: 119.13 E-value: 6.54e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 20 RAGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPGrivEGAILFDGEDLRQADAKRwralrgEEMAMIF 99
Cdd:TIGR00968 9 RFGSFQALDDVNLEVPTGSLVALLGPSGSGKS-TLLRIIAGLEQPD---SGRIRLNGQDATRVHARD------RKIGFVF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 100 QDPMMTLNPVLRVDTQMVETVLAHhdvSRSQAMARALEVLTMVGIPSPRERlraYPHELSGGMRQRVAIAIALLNSPRVI 179
Cdd:TIGR00968 79 QHYALFKHLTVRDNIAFGLEIRKH---PKAKIKARVEELLELVQLEGLGDR---YPNQLSGGQRQRVALARALAVEPQVL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 180 IADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDVIGHALHPYTLGLMA 259
Cdd:TIGR00968 153 LLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPFVMSFLG 232
|
..
gi 1806544180 260 SI 261
Cdd:TIGR00968 233 EV 234
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
1-245 |
7.51e-32 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 122.36 E-value: 7.51e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 1 MTDKAPVLDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPGrivEGAILFDGEDLR 80
Cdd:PRK09452 8 PSSLSPLVELRGISKSF----DGKEVISNLDLTINNGEFLTLLGPSGCGKT-TVLRLIAGFETPD---SGRIMLDGQDIT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 81 QADA-KRwralrgeEMAMIFQD----PMMTLnpvlrvdtqmVETV---LAHHDVSRSQAMARALEVLTMVGIPSPRERlr 152
Cdd:PRK09452 80 HVPAeNR-------HVNTVFQSyalfPHMTV----------FENVafgLRMQKTPAAEITPRVMEALRMVQLEEFAQR-- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 153 aYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMY 232
Cdd:PRK09452 141 -KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMR 219
|
250
....*....|...
gi 1806544180 233 AGRIVETGTSKDV 245
Cdd:PRK09452 220 DGRIEQDGTPREI 232
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
8-241 |
1.34e-31 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 117.86 E-value: 1.34e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRqadaKRW 87
Cdd:cd03265 1 IEVENLVKKY----GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL----KPTSGRATVAGHDVV----REP 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 88 RALRgEEMAMIFQDPMmtlnpvlrVDTQMV--ETVLAH---HDVSRSQAMARALEVLTMVGIPSPRERLRAYpheLSGGM 162
Cdd:cd03265 69 REVR-RRIGIVFQDLS--------VDDELTgwENLYIHarlYGVPGAERRERIDELLDFVGLLEAADRLVKT---YSGGM 136
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1806544180 163 RQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGT 241
Cdd:cd03265 137 RRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGT 215
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
30-228 |
1.76e-31 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 117.99 E-value: 1.76e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 30 VDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPgriVEGAILFDGEDLRQADAKRWRALRGEEMAMIFQdpMMTLNPv 109
Cdd:PRK11629 28 VSFSIGEGEMMAIVGSSGSGKS-TLLHLLGGLDTP---TSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQ--FHHLLP- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 110 lrvDTQMVETV---LAHHDVSRSQAMARALEVLTMVGIpspRERLRAYPHELSGGMRQRVAIAIALLNSPRVIIADEPTT 186
Cdd:PRK11629 101 ---DFTALENVampLLIGKKKPAEINSRALEMLAAVGL---EHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTG 174
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1806544180 187 ALDVTIQAQILYEVRRLCRETGTALIWITHDLAvvagLADRI 228
Cdd:PRK11629 175 NLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ----LAKRM 212
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
8-243 |
2.76e-31 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 116.84 E-value: 2.76e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFftRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFS-LMGLLdepgRIVEGAILFDGEDLRqadakR 86
Cdd:cd03263 1 LQIRNLTKTY--KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKT-TTLKmLTGEL----RPTSGTAYINGYSIR-----T 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 87 WRALRGEEMAMIFQDpmmtlnpvlrvDTQMVE-TVLAH-------HDVSRSQAMARALEVLTMVGIPSPRERLrayPHEL 158
Cdd:cd03263 69 DRKAARQSLGYCPQF-----------DALFDElTVREHlrfyarlKGLPKSEIKEEVELLLRVLGLTDKANKR---ARTL 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 159 SGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQI---LYEVRRlcretGTALIWITHDLAVVAGLADRIAVMYAGR 235
Cdd:cd03263 135 SGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIwdlILEVRK-----GRSIILTTHSMDEAEALCDRIAIMSDGK 209
|
....*...
gi 1806544180 236 IVETGTSK 243
Cdd:cd03263 210 LRCIGSPQ 217
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
7-245 |
4.83e-31 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 118.29 E-value: 4.83e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 7 VLDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLL--DEpgriveGAILFDGEDLRQADA 84
Cdd:COG4152 1 MLELKGLTKRF----GDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILapDS------GEVLWDGEPLDPEDR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 85 KRWRAL---RGeemamifqdpmmtLNPVLRVDTQMVetVLAH-HDVSRSQAMARALEVLTMVGIPsprERLRAYPHELSG 160
Cdd:COG4152 71 RRIGYLpeeRG-------------LYPKMKVGEQLV--YLARlKGLSKAEAKRRADEWLERLGLG---DRANKKVEELSK 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 161 GMRQRVAIAIALLNSPRVIIADEPTTALDVtIQAQILYEV-RRLcRETGTALIWITHDLAVVAGLADRIAVMYAGRIVET 239
Cdd:COG4152 133 GNQQKVQLIAALLHDPELLILDEPFSGLDP-VNVELLKDViREL-AAKGTTVIFSSHQMELVEELCDRIVIINKGRKVLS 210
|
....*.
gi 1806544180 240 GTSKDV 245
Cdd:COG4152 211 GSVDEI 216
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
8-245 |
4.84e-31 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 116.38 E-value: 4.84e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRQADAKRw 87
Cdd:cd03224 1 LEVENLNAGY----GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL----PPRSGSIRFDGRDITGLPPHE- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 88 RALRGeeMAMIFQDPMmtLNPVLRVDT--QMVETVLAHHDVSRSqaMARALEVLtmvgiPSPRERLRAYPHELSGGMRQR 165
Cdd:cd03224 72 RARAG--IGYVPEGRR--IFPELTVEEnlLLGAYARRRAKRKAR--LERVYELF-----PRLKERRKQLAGTLSGGEQQM 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 166 VAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLcRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDV 245
Cdd:cd03224 141 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL-RDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
3-246 |
5.48e-31 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 122.18 E-value: 5.48e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 3 DKAPVLDVRNLktHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDepgrIVEGAILFDGEDLRQA 82
Cdd:COG4987 329 PGGPSLELEDV--SFRYPGAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLD----PQSGSITLGGVDLRDL 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 83 DAKRWRALrgeeMAMIFQDP---MMTL--NpvLRvdtqmvetvLAHHDVSRsqamARALEVLTMVGIpspRERLRAYPHE 157
Cdd:COG4987 403 DEDDLRRR----IAVVPQRPhlfDTTLreN--LR---------LARPDATD----EELWAALERVGL---GDWLAALPDG 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 158 L-----------SGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRetGTALIWITHDLAVVAgLAD 226
Cdd:COG4987 461 LdtwlgeggrrlSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALA--GRTVLLITHRLAGLE-RMD 537
|
250 260
....*....|....*....|
gi 1806544180 227 RIAVMYAGRIVETGTSKDVI 246
Cdd:COG4987 538 RILVLEDGRIVEQGTHEELL 557
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
5-245 |
6.56e-31 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 121.67 E-value: 6.56e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 5 APVLDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLL------DepgrivEGAILFDGED 78
Cdd:COG3845 3 PPALELRGITKRF----GGVVANDDVSLTVRPGEIHALLGENGAGKS----TLMKILyglyqpD------SGEILIDGKP 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 79 LRQADAKRWRALRgeeMAMIFQDPMmtLNPVLRVdtqmVETV-LAHHD-----VSRSQAMARALEVLTMVGIPSPrerLR 152
Cdd:COG3845 69 VRIRSPRDAIALG---IGMVHQHFM--LVPNLTV----AENIvLGLEPtkggrLDRKAARARIRELSERYGLDVD---PD 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 153 AYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALdvTIQ-AQILYEV-RRLCREtGTALIWITHDLAVVAGLADRIAV 230
Cdd:COG3845 137 AKVEDLSVGEQQRVEILKALYRGARILILDEPTAVL--TPQeADELFEIlRRLAAE-GKSIIFITHKLREVMAIADRVTV 213
|
250
....*....|....*
gi 1806544180 231 MYAGRIVETGTSKDV 245
Cdd:COG3845 214 LRRGKVVGTVDTAET 228
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
5-236 |
9.18e-31 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 114.45 E-value: 9.18e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 5 APVLDVRNLKTHfftragvvKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRQADA 84
Cdd:cd03215 2 EPVLEVRGLSVK--------GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR----PPASGEITLDGKPVTRRSP 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 85 KRWRALRgeeMAMIFQDpmmtlnpvlrvdtqmvetvlahhdvsrsqamaRALE--VLTMvgipSPRERLrAYPHELSGGM 162
Cdd:cd03215 70 RDAIRAG---IAYVPED--------------------------------RKREglVLDL----SVAENI-ALSSLLSGGN 109
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1806544180 163 RQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLcRETGTALIWITHDLAVVAGLADRIAVMYAGRI 236
Cdd:cd03215 110 QQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIREL-ADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
25-237 |
1.27e-30 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 114.66 E-value: 1.27e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 25 KAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEpgriVEGAILFDGEDLRQADakrwralRGEEMAMIFQDPmm 104
Cdd:cd03226 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE----SSGSILLNGKPIKAKE-------RRKSIGYVMQDV-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 105 tlNPVLRVDTQMVETVLAHHDVSRSQAMARalEVLTMVGIPSPRERlraYPHELSGGMRQRVAIAIALLNSPRVIIADEP 184
Cdd:cd03226 81 --DYQLFTDSVREELLLGLKELDAGNEQAE--TVLKDLDLYALKER---HPLSLSGGQKQRLAIAAALLSGKDLLIFDEP 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1806544180 185 TTALDvTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIV 237
Cdd:cd03226 154 TSGLD-YKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
8-240 |
3.14e-30 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 114.00 E-value: 3.14e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdEPGrivEGAILFDGEDLRQ--ADAK 85
Cdd:cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL-EPD---AGFATVDGFDVVKepAEAR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 86 RwralrgeemAMIFQDPMMTLNPVLRVdTQMVETVLAHHDVSRSQAMARALEVLTMVGIPSPRERLRAyphELSGGMRQR 165
Cdd:cd03266 78 R---------RLGFVSDSTGLYDRLTA-RENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVG---GFSTGMRQK 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1806544180 166 VAIAIALLNSPRVIIADEPTTALDVTiQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETG 240
Cdd:cd03266 145 VAIARALVHDPPVLLLDEPTTGLDVM-ATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
3-246 |
6.59e-30 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 114.03 E-value: 6.59e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 3 DKAPVLDVRNLkthFFTRAGVVkAVDGVDLYLRQGEILGLVGESGSGKSiTGF-SLMGLLdepgRIVEGAILFDGEDLRQ 81
Cdd:COG1121 2 MMMPAIELENL---TVSYGGRP-VLEDVSLTIPPGEFVAIVGPNGAGKS-TLLkAILGLL----PPTSGTVRLFGKPPRR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 82 ADAK----------RWR-ALRGEEMAMIFQDPMMTLNPVLRvdtqmvetvlahhdvsrSQAMARALEVLTMVGIPSPRER 150
Cdd:COG1121 73 ARRRigyvpqraevDWDfPITVRDVVLMGRYGRRGLFRRPS-----------------RADREAVDEALERVGLEDLADR 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 151 lrayP-HELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCREtGTALIWITHDLAVVAGLADRIA 229
Cdd:COG1121 136 ----PiGELSGGQQQRVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRRE-GKTILVVTHDLGAVREYFDRVL 210
|
250
....*....|....*..
gi 1806544180 230 VMyAGRIVETGTSKDVI 246
Cdd:COG1121 211 LL-NRGLVAHGPPEEVL 226
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
6-261 |
7.16e-30 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 116.86 E-value: 7.16e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 6 PVLDVRNLKTHFFTRAgvvkAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPgriVEGAILFDGEDLRQADAK 85
Cdd:PRK11607 18 PLLEIRNLTKSFDGQH----AVDDVSLTIYKGEIFALLGASGCGKS-TLLRMLAGFEQP---TAGQIMLDGVDLSHVPPY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 86 RwralrgEEMAMIFQD----PMMTLNpvlrvdtQMVETVLAHHDVSRSQAMARALEVLTMVGIpspRERLRAYPHELSGG 161
Cdd:PRK11607 90 Q------RPINMMFQSyalfPHMTVE-------QNIAFGLKQDKLPKAEIASRVNEMLGLVHM---QEFAKRKPHQLSGG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 162 MRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGT 241
Cdd:PRK11607 154 QRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGE 233
|
250 260
....*....|....*....|
gi 1806544180 242 SKDVIGHALHPYTLGLMASI 261
Cdd:PRK11607 234 PEEIYEHPTTRYSAEFIGSV 253
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
8-246 |
1.70e-29 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 113.29 E-value: 1.70e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLktHFftRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLD---EPGRiveGAILFDGEDLRQADA 84
Cdd:COG4559 2 LEAENL--SV--RLGGRTLLDDVSLTLRPGELTAIIGPNGAGKS----TLLKLLTgelTPSS---GEVRLNGRPLAAWSP 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 85 KRWRALRGeemamifqdpmmtlnpVLRVDTQM-----VETV----LAHHDVSRSQAMARALEVLTMVGIPSPRERLraYP 155
Cdd:COG4559 71 WELARRRA----------------VLPQHSSLafpftVEEVvalgRAPHGSSAAQDRQIVREALALVGLAHLAGRS--YQ 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 156 hELSGGMRQRVAIAIALL-------NSPRVIIADEPTTALDVTIQAQILYEVRRLCREtGTALIWITHDLAVVAGLADRI 228
Cdd:COG4559 133 -TLSGGEQQRVQLARVLAqlwepvdGGPRWLFLDEPTSALDLAHQHAVLRLARQLARR-GGGVVAVLHDLNLAAQYADRI 210
|
250
....*....|....*...
gi 1806544180 229 AVMYAGRIVETGTSKDVI 246
Cdd:COG4559 211 LLLHQGRLVAQGTPEEVL 228
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
30-260 |
2.20e-29 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 115.20 E-value: 2.20e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 30 VDLYLRQGEILGLVGESGSGKSitgfSLM----GLLdepgRIVEGAILFDGEDLRQADAKRWRALRGEEMAMIFQDPMmt 105
Cdd:COG4148 18 VDFTLPGRGVTALFGPSGSGKT----TLLraiaGLE----RPDSGRIRLGGEVLQDSARGIFLPPHRRRIGYVFQEAR-- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 106 LNPVLRVdtqmVETVL-AHHDVSRSQAMARALEVLTMVGIpspRERLRAYPHELSGGMRQRVAIAIALLNSPRVIIADEP 184
Cdd:COG4148 88 LFPHLSV----RGNLLyGRKRAPRAERRISFDEVVELLGI---GHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEP 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1806544180 185 TTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDVIGH-ALHPYTLGLMAS 260
Cdd:COG4148 161 LAALDLARKAEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRpDLLPLAGGEEAG 237
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
31-252 |
2.54e-29 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 112.16 E-value: 2.54e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 31 DLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPGRiveGAILFDGEDL-RQADAKRwralrgeEMAMIFQD----PMMT 105
Cdd:COG3840 19 DLTIAAGERVAILGPSGAGKS-TLLNLIAGFLPPDS---GRILWNGQDLtALPPAER-------PVSMLFQEnnlfPHLT 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 106 --------LNPVLRVDTQMVETVlahhdvsrSQAMARalevltmVGIPSPRERLrayPHELSGGMRQRVAIAIALLNSPR 177
Cdd:COG3840 88 vaqniglgLRPGLKLTAEQRAQV--------EQALER-------VGLAGLLDRL---PGQLSGGQRQRVALARCLVRKRP 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1806544180 178 VIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDVIGHALHP 252
Cdd:COG3840 150 ILLLDEPFSALDPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLDGEPPP 224
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
21-235 |
3.18e-29 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 111.19 E-value: 3.18e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 21 AGVVKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQADAKRWRALRgEEMAMIFQ 100
Cdd:TIGR02673 12 PGGVAALHDVSLHIRKGEFLFLTGPSGAGKT----TLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLR-RRIGVVFQ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 101 D----PMMTL--NPVLRVDTQMVETVLAHHDVSRsqamaraleVLTMVGIPsprERLRAYPHELSGGMRQRVAIAIALLN 174
Cdd:TIGR02673 87 DfrllPDRTVyeNVALPLEVRGKKEREIQRRVGA---------ALRQVGLE---HKADAFPEQLSGGEQQRVAIARAIVN 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1806544180 175 SPRVIIADEPTTALDVTIQAQILYEVRRLCREtGTALIWITHDLAVVAGLADRIAVMYAGR 235
Cdd:TIGR02673 155 SPPLLLADEPTGNLDPDLSERILDLLKRLNKR-GTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
22-243 |
3.59e-29 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 113.64 E-value: 3.59e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 22 GVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGED-LRQADAKRwralrgEEMAMIFQ 100
Cdd:TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLL----RPTSGTARVAGYDvVREPRKVR------RSIGIVPQ 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 101 DPmmTLNPVLrVDTQMVETVLAHHDVSRSQAMARALEVLTMVGIPSPRERLRAYpheLSGGMRQRVAIAIALLNSPRVII 180
Cdd:TIGR01188 74 YA--SVDEDL-TGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGT---YSGGMRRRLDIAASLIHQPDVLF 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1806544180 181 ADEPTTALDVTIQAQILYEVRRLcRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSK 243
Cdd:TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRAL-KEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPE 209
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
6-246 |
7.36e-29 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 111.40 E-value: 7.36e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 6 PVLDVRNLKthfFTRAGvvKAV-DGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQada 84
Cdd:PRK13548 1 AMLEARNLS---VRLGG--RTLlDDVSLTLRPGEVVAILGPNGAGKS----TLLRALSGELSPDSGEVRLNGRPLAD--- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 85 krWRAlrgEEMAMIfqdpmmtlNPVLRVDTQM-----VETV----LAHHDVSRSQAMARALEVLTMVGIPSPRERLraYP 155
Cdd:PRK13548 69 --WSP---AELARR--------RAVLPQHSSLsfpftVEEVvamgRAPHGLSRAEDDALVAAALAQVDLAHLAGRD--YP 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 156 hELSGGMRQRVAIAIALL------NSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIA 229
Cdd:PRK13548 134 -QLSGGEQQRVQLARVLAqlwepdGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIV 212
|
250
....*....|....*..
gi 1806544180 230 VMYAGRIVETGTSKDVI 246
Cdd:PRK13548 213 LLHQGRLVADGTPAEVL 229
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
25-245 |
9.91e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 112.06 E-value: 9.91e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 25 KAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdEPgriVEGAILFDGEDLRQADAKrWRALRgEEMAMIFQDPMM 104
Cdd:PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLL-KP---TSGKIIIDGVDITDKKVK-LSDIR-KKVGLVFQYPEY 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 105 TLnpvlrvdtqMVETVlaHHDV---------SRSQAMARALEVLTMVGIPSPRERLRAyPHELSGGMRQRVAIAIALLNS 175
Cdd:PRK13637 95 QL---------FEETI--EKDIafgpinlglSEEEIENRVKRAMNIVGLDYEDYKDKS-PFELSGGQKRRVAIAGVVAME 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 176 PRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDV 245
Cdd:PRK13637 163 PKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
26-246 |
1.12e-28 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 110.65 E-value: 1.12e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 26 AVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGL-LDEPGRIvegaiLFDGEDLRQADAKRWRAlrgeEMAMIFQDPMM 104
Cdd:cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFyVPENGRV-----LVDGHDLALADPAWLRR----QVGVVLQENVL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 105 tLNPVLRVDTQMVETVLAHHDVSRSQAMARALEVL--------TMVGipsprERLRAypheLSGGMRQRVAIAIALLNSP 176
Cdd:cd03252 88 -FNRSIRDNIALADPGMSMERVIEAAKLAGAHDFIselpegydTIVG-----EQGAG----LSGGQRQRIAIARALIHNP 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 177 RVIIADEPTTALDVTIQAQILYEVRRLCreTGTALIWITHDLAVVAGlADRIAVMYAGRIVETGTSKDVI 246
Cdd:cd03252 158 RILIFDEATSALDYESEHAIMRNMHDIC--AGRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDELL 224
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
5-237 |
1.23e-28 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 115.98 E-value: 1.23e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 5 APVLDVRNLKTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPgriVEGAILFDGEDLRQADA 84
Cdd:PRK10535 2 TALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKS-TLMNILGCLDKP---TSGTYRVAGQDVATLDA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 85 KRWRALRGEEMAMIFQdpMMTLNPVLRVdTQMVETVLAHHDVSRSQAMARALEVLTMVGIpspRERLRAYPHELSGGMRQ 164
Cdd:PRK10535 78 DALAQLRREHFGFIFQ--RYHLLSHLTA-AQNVEVPAVYAGLERKQRLLRAQELLQRLGL---EDRVEYQPSQLSGGQQQ 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1806544180 165 RVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLcRETGTALIWITHDlAVVAGLADRIAVMYAGRIV 237
Cdd:PRK10535 152 RVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQL-RDRGHTVIIVTHD-PQVAAQAERVIEIRDGEIV 222
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
14-253 |
1.80e-28 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 113.59 E-value: 1.80e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 14 KTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPGRiveGAILFDGEDLRQADAKRWRALRGE 93
Cdd:PRK10070 31 KEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKS-TMVRLLNRLIEPTR---GQVLIDGVDIAKISDAELREVRRK 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 94 EMAMIFQD----PMMTLnpvlrVDTQMVETVLAhhDVSRSQAMARALEVLTMVGIpspRERLRAYPHELSGGMRQRVAIA 169
Cdd:PRK10070 107 KIAMVFQSfalmPHMTV-----LDNTAFGMELA--GINAEERREKALDALRQVGL---ENYAHSYPDELSGGMRQRVGLA 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 170 IALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDVIGHA 249
Cdd:PRK10070 177 RALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP 256
|
....
gi 1806544180 250 LHPY 253
Cdd:PRK10070 257 ANDY 260
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
15-252 |
2.50e-28 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 110.06 E-value: 2.50e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 15 THFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPGrivEGAILFDGED----------LRQADA 84
Cdd:PRK10619 9 IDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKS-TFLRCINFLEKPS---EGSIVVNGQTinlvrdkdgqLKVADK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 85 KRWRALRgEEMAMIFQ-----DPMMTLNPVLRVDTQMVetvlahhDVSRSQAMARALEVLTMVGIPsprERLRA-YPHEL 158
Cdd:PRK10619 85 NQLRLLR-TRLTMVFQhfnlwSHMTVLENVMEAPIQVL-------GLSKQEARERAVKYLAKVGID---ERAQGkYPVHL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 159 SGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCREtGTALIWITHDLAVVAGLADRIAVMYAGRIVE 238
Cdd:PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 232
|
250
....*....|....
gi 1806544180 239 TGTSKDVIGHALHP 252
Cdd:PRK10619 233 EGAPEQLFGNPQSP 246
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
8-240 |
4.13e-28 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 108.14 E-value: 4.13e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdEPGrivEGAILFDGEDLRQADAKRW 87
Cdd:cd03269 1 LEVENVTKRF----GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII-LPD---SGEVLFDGKPLDIAARNRI 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 88 RAL---RGeemamifqdpmmtLNPVLRVDTQMVetVLAH-HDVSRSQAMARALEVLTMVGIPSPRE-RLRayphELSGGM 162
Cdd:cd03269 73 GYLpeeRG-------------LYPKMKVIDQLV--YLAQlKGLKKEEARRRIDEWLERLELSEYANkRVE----ELSKGN 133
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1806544180 163 RQRVAIAIALLNSPRVIIADEPTTALDVtIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETG 240
Cdd:cd03269 134 QQKVQFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
6-239 |
4.82e-28 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 109.57 E-value: 4.82e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 6 PVLDVRNLKTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPGrivEGAILFDGEDLRQADAK 85
Cdd:COG4525 2 SMLTVRHVSVRYPGGGQPQPALQDVSLTIESGEFVVALGASGCGKT-TLLNLIAGFLAPS---SGEITLDGVPVTGPGAD 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 86 RwralrgeemAMIFQDPmmTLNPVLRVdTQMVETVLAHHDVSRSQAMARALEVLTMVGIpspRERLRAYPHELSGGMRQR 165
Cdd:COG4525 78 R---------GVVFQKD--ALLPWLNV-LDNVAFGLRLRGVPKAERRARAEELLALVGL---ADFARRRIWQLSGGMRQR 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 166 VAIAIALLNSPRVIIADEPTTALDV----TIQAQILyevrRLCRETGTALIWITHDL--AVVagLADRIAVM--YAGRIV 237
Cdd:COG4525 143 VGIARALAADPRFLLMDEPFGALDAltreQMQELLL----DVWQRTGKGVFLITHSVeeALF--LATRLVVMspGPGRIV 216
|
..
gi 1806544180 238 ET 239
Cdd:COG4525 217 ER 218
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
7-257 |
4.99e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 109.82 E-value: 4.99e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 7 VLDVRNLKTHFFTRAGVVkAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEPgrivEGAILFDGEDLRQADAkr 86
Cdd:PRK13650 4 IIEVKNLTFKYKEDQEKY-TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE----SGQIIIDGDLLTEENV-- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 87 WRALRgeEMAMIFQDPmmtlnpvlrvDTQMV-ETV-------LAHHDVSRSQAMARALEVLTMVGIPSPRERlraYPHEL 158
Cdd:PRK13650 77 WDIRH--KIGMVFQNP----------DNQFVgATVeddvafgLENKGIPHEEMKERVNEALELVGMQDFKER---EPARL 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 159 SGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAgLADRIAVMYAGRIVE 238
Cdd:PRK13650 142 SGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVES 220
|
250
....*....|....*....
gi 1806544180 239 TGTSKDVIGHALHPYTLGL 257
Cdd:PRK13650 221 TSTPRELFSRGNDLLQLGL 239
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
25-241 |
5.08e-28 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 108.86 E-value: 5.08e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 25 KAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQADAKrwrALRgEEMAMIFQDPmm 104
Cdd:cd03253 15 PVLKDVSFTIPAGKKVAIVGPSGSGKS----TILRLLFRFYDVSSGSILIDGQDIREVTLD---SLR-RAIGVVPQDT-- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 105 tlnpVLRVDT---------------QMVETVLA--HHDvsRSQAMARALEvlTMVGipsprER-LRaypheLSGGMRQRV 166
Cdd:cd03253 85 ----VLFNDTigynirygrpdatdeEVIEAAKAaqIHD--KIMRFPDGYD--TIVG-----ERgLK-----LSGGEKQRV 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1806544180 167 AIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCreTGTALIWITHDLAVVAGlADRIAVMYAGRIVETGT 241
Cdd:cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS--KGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGT 218
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
9-246 |
5.44e-28 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 108.78 E-value: 5.44e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 9 DVRNLKTHFFTRAGVvKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQADAKRWR 88
Cdd:cd03249 2 EFKNVSFRYPSRPDV-PILKGLSLTIPPGKTVALVGSSGCGKS----TVVSLLERFYDPTSGEILLDGVDIRDLNLRWLR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 89 ALrgeeMAMIFQDPMMTLNPVL------RVDTQMVETVLA-----HHDVSRSqamaralevL-----TMVGipsprerlr 152
Cdd:cd03249 77 SQ----IGLVSQEPVLFDGTIAenirygKPDATDEEVEEAakkanIHDFIMS---------LpdgydTLVG--------- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 153 AYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRetGTALIWITHDLAVVAGlADRIAVMY 232
Cdd:cd03249 135 ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMK--GRTTIVIAHRLSTIRN-ADLIAVLQ 211
|
250
....*....|....
gi 1806544180 233 AGRIVETGTSKDVI 246
Cdd:cd03249 212 NGQVVEQGTHDELM 225
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
7-254 |
7.26e-28 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 108.85 E-value: 7.26e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 7 VLDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDE--PGRIVEGAILFDGEDLRQADA 84
Cdd:PRK14247 3 KIEIRDLKVSF----GQVEVLDGVNLEIPDNTITALMGPSGSGKS-TLLRVFNRLIElyPEARVSGEVYLDGQDIFKMDV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 85 KRWRalrgEEMAMIFQDPmmtlNPVLRVdtQMVETV-----LAHHDVSRSQAMARALEVLTMVGI-PSPRERLRAYPHEL 158
Cdd:PRK14247 78 IELR----RRVQMVFQIP----NPIPNL--SIFENValglkLNRLVKSKKELQERVRWALEKAQLwDEVKDRLDAPAGKL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 159 SGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCREtgTALIWITHDLAVVAGLADRIAVMYAGRIVE 238
Cdd:PRK14247 148 SGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD--MTIVLVTHFPQQAARISDYVAFLYKGQIVE 225
|
250
....*....|....*.
gi 1806544180 239 TGTSKDVIGHALHPYT 254
Cdd:PRK14247 226 WGPTREVFTNPRHELT 241
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
2-237 |
9.36e-28 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 112.42 E-value: 9.36e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 2 TDKAPVLDVRNLkthffTRAGVVKavdGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRQ 81
Cdd:COG1129 251 APGEVVLEVEGL-----SVGGVVR---DVSFSVRAGEILGIAGLVGAGRTELARALFGAD----PADSGEIRLDGKPVRI 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 82 ---ADAKRwralRGeeMAMIFQD-------PMMTL--NpvlrvdtqmveTVLAHHD-------VSRSQAMARALEVLTMV 142
Cdd:COG1129 319 rspRDAIR----AG--IAYVPEDrkgeglvLDLSIreN-----------ITLASLDrlsrgglLDRRRERALAEEYIKRL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 143 GI--PSPRERLRayphELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCREtGTALIWITHDLAV 220
Cdd:COG1129 382 RIktPSPEQPVG----NLSGGNQQKVVLAKWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAVIVISSELPE 456
|
250
....*....|....*..
gi 1806544180 221 VAGLADRIAVMYAGRIV 237
Cdd:COG1129 457 LLGLSDRILVMREGRIV 473
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
27-234 |
9.97e-28 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 107.94 E-value: 9.97e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 27 VDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPgriVEGAILFDGEDLRQAdakrwralrGEEMAMIFQD----P 102
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKS-TLLNLISGLAQP---TSGGVILEGKQITEP---------GPDRMVVFQNysllP 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 103 MMTL--NPVLRVDTQMvetvlahHDVSRSQAMARALEVLTMVGIpspRERLRAYPHELSGGMRQRVAIAIALLNSPRVII 180
Cdd:TIGR01184 68 WLTVreNIALAVDRVL-------PDLSKSERRAIVEEHIALVGL---TEAADKRPGQLSGGMKQRVAIARALSIRPKVLL 137
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1806544180 181 ADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAG 234
Cdd:TIGR01184 138 LDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
2-259 |
1.66e-27 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 112.04 E-value: 1.66e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 2 TDKAPVLDVRNLKThffTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRQ 81
Cdd:COG3845 252 EPGEVVLEVENLSV---RDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLR----PPASGSIRLDGEDITG 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 82 ADAKRWRALRgeeMAMIFQDPM-------MTLnpvlrvdtqmVE-TVLAHHD---------VSRSQAMARALEVLTMVGI 144
Cdd:COG3845 325 LSPRERRRLG---VAYIPEDRLgrglvpdMSV----------AEnLILGRYRrppfsrggfLDRKAIRAFAEELIEEFDV 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 145 --PSPRERLRAypheLSGGMRQRVAIAIALLNSPRVIIADEPTTALDV----TIQAQILYEvrrlcRETGTALIWITHDL 218
Cdd:COG3845 392 rtPGPDTPARS----LSGGNQQKVILARELSRDPKLLIAAQPTRGLDVgaieFIHQRLLEL-----RDAGAAVLLISEDL 462
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1806544180 219 AVVAGLADRIAVMYAGRIVET----GTSKDVIGHalhpytlgLMA 259
Cdd:COG3845 463 DEILALSDRIAVMYEGRIVGEvpaaEATREEIGL--------LMA 499
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
5-245 |
1.80e-27 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 106.99 E-value: 1.80e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 5 APVLDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRQADA 84
Cdd:COG0410 1 MPMLEVENLHAGY----GGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLL----PPRSGSIRFDGEDITGLPP 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 85 KRwRALRGeeMAM------IFqdPMMTlnpvlrvdtqmVE------TVLAHHDVSRSQAMARALEVLtmvgipsPR--ER 150
Cdd:COG0410 73 HR-IARLG--IGYvpegrrIF--PSLT-----------VEenlllgAYARRDRAEVRADLERVYELF-------PRlkER 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 151 LRAYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLcRETGTALIWITHDLAVVAGLADRIAV 230
Cdd:COG0410 130 RRQRAGTLSGGEQQMLAIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRL-NREGVTILLVEQNARFALEIADRAYV 208
|
250
....*....|....*
gi 1806544180 231 MYAGRIVETGTSKDV 245
Cdd:COG0410 209 LERGRIVLEGTAAEL 223
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
26-240 |
3.35e-27 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 105.69 E-value: 3.35e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 26 AVDGVDLYLRQGEILGLVGESGSGKSiTGF-SLMGLLdepgRIVEGAILFDGEDLR-----------QADAKRWRALRGE 93
Cdd:cd03235 14 VLEDVSFEVKPGEFLAIVGPNGAGKS-TLLkAILGLL----KPTSGSIRVFGKPLEkerkrigyvpqRRSIDRDFPISVR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 94 EMAMifqdpmMTLNPVLRvdtqmvetvlAHHDVSRSQaMARALEVLTMVGIPSPRERLRAyphELSGGMRQRVAIAIALL 173
Cdd:cd03235 89 DVVL------MGLYGHKG----------LFRRLSKAD-KAKVDEALERVGLSELADRQIG---ELSGGQQQRVLLARALV 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1806544180 174 NSPRVIIADEPTTALDVTIQAQILYEVRRLCREtGTALIWITHDLAVVAGLADRIAVMyAGRIVETG 240
Cdd:cd03235 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE-GMTILVVTHDLGLVLEYFDRVLLL-NRTVVASG 213
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
37-240 |
3.93e-27 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 105.84 E-value: 3.93e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 37 GEILGLVGESGSGKSiTGFSLMGLLDEP--GRIV-EGAILFDGE---DLRQADAKrwralrgeeMAMIFQDpmMTLNPVL 110
Cdd:cd03297 23 EEVTGIFGASGAGKS-TLLRCIAGLEKPdgGTIVlNGTVLFDSRkkiNLPPQQRK---------IGLVFQQ--YALFPHL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 111 RVdTQMVETVLAHHdvSRSQAMARALEVLTMVGIpspRERLRAYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDV 190
Cdd:cd03297 91 NV-RENLAFGLKRK--RNREDRISVDELLDLLGL---DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDR 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1806544180 191 TIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETG 240
Cdd:cd03297 165 ALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
2-231 |
9.04e-27 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 110.07 E-value: 9.04e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 2 TDKAPVLDVRNLKthfFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQ 81
Cdd:TIGR02857 316 AAPASSLEFSGVS---VAYPGRRPALRPVSFTVPPGERVALVGPSGAGKS----TLLNLLLGFVDPTEGSIAVNGVPLAD 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 82 ADAKRWRalrgEEMAMIFQDPMMtlnpvlrVDTQMVETV-LAHHDVSRSqAMARALE---VLTMV-GIPSPRE-RLRAYP 155
Cdd:TIGR02857 389 ADADSWR----DQIAWVPQHPFL-------FAGTIAENIrLARPDASDA-EIREALEragLDEFVaALPQGLDtPIGEGG 456
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1806544180 156 HELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRetGTALIWITHDLAVVAgLADRIAVM 231
Cdd:TIGR02857 457 AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ--GRTVLLVTHRLALAA-LADRIVVL 529
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
25-240 |
1.34e-26 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 104.20 E-value: 1.34e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 25 KAVDGVDLYLRQGeILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRqadaKRWRALRGEeMAMIFQDPMm 104
Cdd:cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKT----TLMRILATLTPPSSGTIRIDGQDVL----KQPQKLRRR-IGYLPQEFG- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 105 tLNPVLRVDtQMVETVLAHHDVSRSQAMARALEVLTMVGIpspRERLRAYPHELSGGMRQRVAIAIALLNSPRVIIADEP 184
Cdd:cd03264 83 -VYPNFTVR-EFLDYIAWLKGIPSKEVKARVDEVLELVNL---GDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1806544180 185 TTALDVtiqAQILyEVRRLCRETGTALIWI--THDLAVVAGLADRIAVMYAGRIVETG 240
Cdd:cd03264 158 TAGLDP---EERI-RFRNLLSELGEDRIVIlsTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
26-245 |
1.70e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 105.55 E-value: 1.70e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 26 AVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLL--DEPGRIVEGailFDGEDLRQADAKRWRAlrgeemAMIFQDPm 103
Cdd:PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLipSEGKVYVDG---LDTSDEENLWDIRNKA------GMVFQNP- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 104 mtlnpvlrvDTQMVETVLaHHDVS---------RSQAMARALEVLTMVGIpspRERLRAYPHELSGGMRQRVAIAIALLN 174
Cdd:PRK13633 95 ---------DNQIVATIV-EEDVAfgpenlgipPEEIRERVDESLKKVGM---YEYRRHAPHLLSGGQKQRVAIAGILAM 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1806544180 175 SPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGlADRIAVMYAGRIVETGTSKDV 245
Cdd:PRK13633 162 RPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEI 231
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
8-248 |
1.92e-26 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 109.42 E-value: 1.92e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLkTHFFTRAGVvKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDG---EDLRQADA 84
Cdd:TIGR02203 331 VEFRNV-TFRYPGRDR-PALDSISLVIEPGETVALVGRSGSGKS----TLVNLIPRFYEPDSGQILLDGhdlADYTLASL 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 85 KRWRALRGEEMaMIFQDPMMtlNPVLRVDTQMVETVlahhDVSRSQAMARALEVL--------TMVGIPSPRerlrayph 156
Cdd:TIGR02203 405 RRQVALVSQDV-VLFNDTIA--NNIAYGRTEQADRA----EIERALAAAYAQDFVdklplgldTPIGENGVL-------- 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 157 eLSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETgTALIwITHDLAVVAGlADRIAVMYAGRI 236
Cdd:TIGR02203 470 -LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGR-TTLV-IAHRLSTIEK-ADRIVVMDDGRI 545
|
250
....*....|..
gi 1806544180 237 VETGTSKDVIGH 248
Cdd:TIGR02203 546 VERGTHNELLAR 557
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
12-249 |
1.99e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 105.87 E-value: 1.99e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 12 NLKTHFFTRAgvvkaVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdEPgriVEGAILFdGEDLRQA--DAKRWRA 89
Cdd:PRK13634 13 QYKTPFERRA-----LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLL-QP---TSGTVTI-GERVITAgkKNKKLKP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 90 LRgEEMAMIFQDPmmtlnpvlrvDTQMVE-TVL-------AHHDVSRSQAMARALEVLTMVGIPSprERLRAYPHELSGG 161
Cdd:PRK13634 83 LR-KKVGIVFQFP----------EHQLFEeTVEkdicfgpMNFGVSEEDAKQKAREMIELVGLPE--ELLARSPFELSGG 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 162 MRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGT 241
Cdd:PRK13634 150 QMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGT 229
|
....*...
gi 1806544180 242 SKDVIGHA 249
Cdd:PRK13634 230 PREIFADP 237
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
25-241 |
2.14e-26 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 104.23 E-value: 2.14e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 25 KAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQADAKRWRalrgEEMAMIFQDPmm 104
Cdd:cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKS----TLVNLIPRFYDVDSGRILIDGHDVRDYTLASLR----RQIGLVSQDV-- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 105 tlnpVLRVDTQMVETVLAHHDVSRSQAM-----ARALEVL--------TMVGipsprERlrayPHELSGGMRQRVAIAIA 171
Cdd:cd03251 86 ----FLFNDTVAENIAYGRPGATREEVEeaaraANAHEFImelpegydTVIG-----ER----GVKLSGGQRQRIAIARA 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 172 LLNSPRVIIADEPTTALDVTIQAQILYEVRRLcRETGTALIwITHDLAVVAGlADRIAVMYAGRIVETGT 241
Cdd:cd03251 153 LLKDPPILILDEATSALDTESERLVQAALERL-MKNRTTFV-IAHRLSTIEN-ADRIVVLEDGKIVERGT 219
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
7-245 |
2.17e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 105.16 E-value: 2.17e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 7 VLDVRNLKthfFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdEPgriVEGAILFDGEDLRQaDAKR 86
Cdd:PRK13639 1 ILETRDLK---YSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGIL-KP---TSGEVLIKGEPIKY-DKKS 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 87 WRALRgEEMAMIFQDPMMTL-NPVLRVDTQM--VETVLAHHDVSRsqamaRALEVLTMVGIPSPRERLrayPHELSGGMR 163
Cdd:PRK13639 73 LLEVR-KTVGIVFQNPDDQLfAPTVEEDVAFgpLNLGLSKEEVEK-----RVKEALKAVGMEGFENKP---PHHLSGGQK 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 164 QRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCREtGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSK 243
Cdd:PRK13639 144 KRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPK 222
|
..
gi 1806544180 244 DV 245
Cdd:PRK13639 223 EV 224
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-245 |
3.79e-26 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 104.35 E-value: 3.79e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 1 MTDKAPVLDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTgF--SLMGLLD-EPGRIVEGAILFDGE 77
Cdd:COG1117 5 ASTLEPKIEVRNLNVYY----GDKQALKDINLDIPENKVTALIGPSGCGKS-T-LlrCLNRMNDlIPGARVEGEILLDGE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 78 DL--RQADAKRWRAlrgeEMAMIFQDPmmtlNP--------V---LRVdtqmvetvlaHHDVSRSQAMARALEVLTMVGI 144
Cdd:COG1117 79 DIydPDVDVVELRR----RVGMVFQKP----NPfpksiydnVaygLRL----------HGIKSKSELDEIVEESLRKAAL 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 145 PSprE---RLRAYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQIlyE--VRRLCRETgTALIwITHDLA 219
Cdd:COG1117 141 WD--EvkdRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTAKI--EelILELKKDY-TIVI-VTHNMQ 214
|
250 260
....*....|....*....|....*.
gi 1806544180 220 VVAGLADRIAVMYAGRIVETGTSKDV 245
Cdd:COG1117 215 QAARVSDYTAFFYLGELVEFGPTEQI 240
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
24-236 |
4.44e-26 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 102.87 E-value: 4.44e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 24 VKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQADAKRWRALRgEEMAMIFQDPM 103
Cdd:cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKS----TLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLR-RKIGVVFQDFR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 104 M--TLNPVLRVDTQMVETVLAHHDVSRsqamaRALEVLTMVGIpspRERLRAYPHELSGGMRQRVAIAIALLNSPRVIIA 181
Cdd:cd03292 89 LlpDRNVYENVAFALEVTGVPPREIRK-----RVPAALELVGL---SHKHRALPAELSGGEQQRVAIARAIVNSPTILIA 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1806544180 182 DEPTTALDVTIQAQILyEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRI 236
Cdd:cd03292 161 DEPTGNLDPDTTWEIM-NLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
24-240 |
5.70e-26 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 102.67 E-value: 5.70e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 24 VKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdEPGrivEGAILFDGEDLRQADAkrwRALRgEEMAMIFQDPM 103
Cdd:cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY-KPT---SGSVLLDGTDIRQLDP---ADLR-RNIGYVPQDVT 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 104 M---TL--NPVLR---VDTQMVE---TVLAHHDVSRSQAMARALEVltmvgipspRERLRAypheLSGGMRQRVAIAIAL 172
Cdd:cd03245 89 LfygTLrdNITLGaplADDERILraaELAGVTDFVNKHPNGLDLQI---------GERGRG----LSGGQRQAVALARAL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1806544180 173 LNSPRVIIADEPTTALDVTIQAQILYEVRRLCRetGTALIWITHDLAVVAgLADRIAVMYAGRIVETG 240
Cdd:cd03245 156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLLD-LVDRIIVMDSGRIVADG 220
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
7-222 |
7.45e-26 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 102.93 E-value: 7.45e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 7 VLDVRNLKTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQADAKR 86
Cdd:PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKS----TLLAILAGLDDGSSGEVSLVGQPLHQMDEEA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 87 WRALRGEEMAMIFQDPMM--TLNPVlrvdtQMVETVLAHHDVSRSQAMARALEVLTMVGIPsprERLRAYPHELSGGMRQ 164
Cdd:PRK10584 82 RAKLRAKHVGFVFQSFMLipTLNAL-----ENVELPALLRGESSRQSRNGAKALLEQLGLG---KRLDHLPAQLSGGEQQ 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1806544180 165 RVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVA 222
Cdd:PRK10584 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA 211
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
30-253 |
1.28e-25 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 104.81 E-value: 1.28e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 30 VDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQADAKRWRALRGEEMAMIFQDPmmTLNPV 109
Cdd:TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKT----TLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEA--RLFPH 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 110 LRVDTQMVETVlahHDVSRSQAMARALEVLTMVGIpSPRerLRAYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALD 189
Cdd:TIGR02142 90 LSVRGNLRYGM---KRARPSERRISFERVIELLGI-GHL--LGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1806544180 190 VTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDVIGHALHPY 253
Cdd:TIGR02142 164 DPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227
|
|
| PhnT |
TIGR03258 |
2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT; This ATP-binding ... |
16-248 |
2.21e-25 |
|
2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT; This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Pssm-ID: 132302 [Multi-domain] Cd Length: 362 Bit Score: 104.31 E-value: 2.21e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 16 HFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEPGriVEGAILFDGEDLRQADAKRwralRGeeM 95
Cdd:TIGR03258 10 HLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG--LTGRIAIADRDLTHAPPHK----RG--L 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 96 AMIFQDpmMTLNPVLRVDTQmVETVLAHHDVSRSQAMARALEVLTMVGIPSPRERlraYPHELSGGMRQRVAIAIALLNS 175
Cdd:TIGR03258 82 ALLFQN--YALFPHLKVEDN-VAFGLRAQKMPKADIAERVADALKLVGLGDAAAH---LPAQLSGGMQQRIAIARAIAIE 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1806544180 176 PRVIIADEPTTALDVTIQAQILYEVRRLCRE-TGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDVIGH 248
Cdd:TIGR03258 156 PDVLLLDEPLSALDANIRANMREEIAALHEElPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1-245 |
2.42e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 102.38 E-value: 2.42e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 1 MTDKAPVLDVRNLKthFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLR 80
Cdd:PRK13632 1 IKNKSVMIKVENVS--FSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL----KPQSGEIKIDGITIS 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 81 QADAKRWRalrgEEMAMIFQDPmmtlnpvlrvDTQMV-ETV-------LAHHDVSRSQAMARALEVLTMVGIpspRERLR 152
Cdd:PRK13632 75 KENLKEIR----KKIGIIFQNP----------DNQFIgATVeddiafgLENKKVPPKKMKDIIDDLAKKVGM---EDYLD 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 153 AYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAgLADRIAVMY 232
Cdd:PRK13632 138 KEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFS 216
|
250
....*....|...
gi 1806544180 233 AGRIVETGTSKDV 245
Cdd:PRK13632 217 EGKLIAQGKPKEI 229
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
6-239 |
4.35e-25 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 105.01 E-value: 4.35e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 6 PVLDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDE--PGRIVEGAILFDGEDLRqad 83
Cdd:PRK13549 4 YLLEMKNITKTF----GGVKALDNVSLKVRAGEIVSLCGENGAGKS----TLMKVLSGvyPHGTYEGEIIFEGEELQ--- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 84 AKRWRALRGEEMAMIFQDpmMTLNPVLRVdtqmVETVLAHHDVSRSQAM------ARALEVLTMVGIP-SPRERLRayph 156
Cdd:PRK13549 73 ASNIRDTERAGIAIIHQE--LALVKELSV----LENIFLGNEITPGGIMdydamyLRAQKLLAQLKLDiNPATPVG---- 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 157 ELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTiQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRI 236
Cdd:PRK13549 143 NLGLGQQQLVEIAKALNKQARLLILDEPTASLTES-ETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRH 221
|
...
gi 1806544180 237 VET 239
Cdd:PRK13549 222 IGT 224
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
8-240 |
5.28e-25 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 99.98 E-value: 5.28e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRQADAKRW 87
Cdd:cd03268 1 LKTNDLTKTY----GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI----KPDSGEITFDGKSYQKNIEALR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 88 RalrgeeMAMIFQDPmmTLNPVLrvdtqmvetvLAHHDVSRSQAM-----ARALEVLTMVGipsprerLRAYPHE----L 158
Cdd:cd03268 73 R------IGALIEAP--GFYPNL----------TARENLRLLARLlgirkKRIDEVLDVVG-------LKDSAKKkvkgF 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 159 SGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIwITHDLAVVAGLADRIAVMYAGRIVE 238
Cdd:cd03268 128 SLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLI-SSHLLSEIQKVADRIGIINKGKLIE 206
|
..
gi 1806544180 239 TG 240
Cdd:cd03268 207 EG 208
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
26-257 |
7.57e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 100.98 E-value: 7.57e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 26 AVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPGrivEGAILFDGEDLRQADAKRWRalrgEEMAMIFQDPmmt 105
Cdd:PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKS-TIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLR----KHIGIVFQNP--- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 106 lnpvlrvDTQMVETV--------LAHHDVSRSQAMARALEVLTMVGIpspRERLRAYPHELSGGMRQRVAIAIALLNSPR 177
Cdd:PRK13648 93 -------DNQFVGSIvkydvafgLENHAVPYDEMHRRVSEALKQVDM---LERADYEPNALSGGQKQRVAIAGVLALNPS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 178 VIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGlADRIAVMYAGRIVETGTSKDVIGHALHPYTLGL 257
Cdd:PRK13648 163 VIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFDHAEELTRIGL 241
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
7-261 |
9.65e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 100.94 E-value: 9.65e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 7 VLDVRNLkTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEpgriVEGAILFDGEDLRQADAkr 86
Cdd:PRK13642 4 ILEVENL-VFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE----FEGKVKIDGELLTAENV-- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 87 WRALRgeEMAMIFQDPmmtlnpvlrvDTQMVETV--------LAHHDVSRSQAMARALEVLTMVGIPSPRERlraYPHEL 158
Cdd:PRK13642 77 WNLRR--KIGMVFQNP----------DNQFVGATveddvafgMENQGIPREEMIKRVDEALLAVNMLDFKTR---EPARL 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 159 SGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGlADRIAVMYAGRIVE 238
Cdd:PRK13642 142 SGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIK 220
|
250 260 270
....*....|....*....|....*....|.
gi 1806544180 239 T-------GTSKDVIGHALH-PYTLGLMASI 261
Cdd:PRK13642 221 EaapselfATSEDMVEIGLDvPFSSNLMKDL 251
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
8-245 |
3.88e-24 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 100.69 E-value: 3.88e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFftrAGVVKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLM----GLldEpgRIVEGAILFDGE---DLR 80
Cdd:PRK11650 4 LKLQAVRKSY---DGKTQVIKGIDLDVADGEFIVLVGPSGCGKS----TLLrmvaGL--E--RITSGEIWIGGRvvnELE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 81 QADakrwralRGeeMAMIFQD----PMMTlnpvlrvdtqmVETVLAH----HDVSRSQAMARALEVLTMVGIPSPRERlr 152
Cdd:PRK11650 73 PAD-------RD--IAMVFQNyalyPHMS-----------VRENMAYglkiRGMPKAEIEERVAEAARILELEPLLDR-- 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 153 aYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMY 232
Cdd:PRK11650 131 -KPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMN 209
|
250
....*....|...
gi 1806544180 233 AGRIVETGTSKDV 245
Cdd:PRK11650 210 GGVAEQIGTPVEV 222
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
7-245 |
5.49e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 98.72 E-value: 5.49e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 7 VLDVRNLkTHFFTraGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRQADAKR 86
Cdd:PRK13652 3 LIETRDL-CYSYS--GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL----KPTSGSVLIRGEPITKENIRE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 87 WRALRGeemaMIFQDPM-MTLNPVLRVDTQMVETVLAhhdVSRSQAMARALEVLTMVGIPSPRERLrayPHELSGGMRQR 165
Cdd:PRK13652 76 VRKFVG----LVFQNPDdQIFSPTVEQDIAFGPINLG---LDEETVAHRVSSALHMLGLEELRDRV---PHHLSGGEKKR 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 166 VAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDV 245
Cdd:PRK13652 146 VAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
18-241 |
6.13e-24 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 101.96 E-value: 6.13e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 18 FTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRqaDAKRwRALRgEEMAM 97
Cdd:PRK13657 342 FSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKS----TLINLLQRVFDPQSGRILIDGTDIR--TVTR-ASLR-RNIAV 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 98 IFQDPMM---TLNPVLRV---DTQMVETVLAhhdVSRSQA----MARALEVLTMVGipsprERLRAypheLSGGMRQRVA 167
Cdd:PRK13657 414 VFQDAGLfnrSIEDNIRVgrpDATDEEMRAA---AERAQAhdfiERKPDGYDTVVG-----ERGRQ----LSGGERQRLA 481
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1806544180 168 IAIALLNSPRVIIADEPTTALDVTIQAQI---LYEVRRlcreTGTALIwITHDLAVVAGlADRIAVMYAGRIVETGT 241
Cdd:PRK13657 482 IARALLKDPPILILDEATSALDVETEAKVkaaLDELMK----GRTTFI-IAHRLSTVRN-ADRILVFDNGRVVESGS 552
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
20-260 |
8.64e-24 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 99.79 E-value: 8.64e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 20 RAGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPgriVEGAILFDGEDLRQadakrwRALRGEEMAMIF 99
Cdd:PRK11432 15 RFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKT-TVLRLVAGLEKP---TEGQIFIDGEDVTH------RSIQQRDICMVF 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 100 QD----PMMTLNpvlrvdtQMVETVLAHHDVSRSQAMARALEVLTMVGIPSPRERlraYPHELSGGMRQRVAIAIALLNS 175
Cdd:PRK11432 85 QSyalfPHMSLG-------ENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDR---YVDQISGGQQQRVALARALILK 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 176 PRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDVIghaLHPYTL 255
Cdd:PRK11432 155 PKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELY---RQPASR 231
|
....*
gi 1806544180 256 gLMAS 260
Cdd:PRK11432 232 -FMAS 235
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
5-246 |
1.41e-23 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 99.92 E-value: 1.41e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 5 APVLDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDePGrivEGAILFDGEDLRQADA 84
Cdd:PRK09536 1 MPMIDVSDLSVEF----GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT-PT---AGTVLVAGDDVEALSA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 85 KRwralRGEEMAMIFQDPMMTLNPVLRVDTQMVETV----LAHHDVSRSQAMARALEvltMVGIPSPRERLRAyphELSG 160
Cdd:PRK09536 73 RA----ASRRVASVPQDTSLSFEFDVRQVVEMGRTPhrsrFDTWTETDRAAVERAME---RTGVAQFADRPVT---SLSG 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 161 GMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCrETGTALIWITHDLAVVAGLADRIAVMYAGRIVETG 240
Cdd:PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLV-DDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
|
....*.
gi 1806544180 241 TSKDVI 246
Cdd:PRK09536 222 PPADVL 227
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
26-245 |
1.47e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 97.95 E-value: 1.47e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 26 AVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdEPGRIVEGAILFDGEDLRQADAKRWRalrgEEMAMIFQDPmmt 105
Cdd:PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLL-LPDDNPNSKITVDGITLTAKTVWDIR----EKVGIVFQNP--- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 106 lnpvlrvDTQMV-ETV-------LAHHDVSRSQAMARALEVLTMVGIpspRERLRAYPHELSGGMRQRVAIAIALLNSPR 177
Cdd:PRK13640 94 -------DNQFVgATVgddvafgLENRAVPRPEMIKIVRDVLADVGM---LDYIDSEPANLSGGQKQRVAIAGILAVEPK 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1806544180 178 VIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAvVAGLADRIAVMYAGRIVETGTSKDV 245
Cdd:PRK13640 164 IIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EANMADQVLVLDDGKLLAQGSPVEI 230
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
7-245 |
1.81e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 97.61 E-value: 1.81e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 7 VLDVRNLKTHFftrAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRQAdAKR 86
Cdd:PRK13636 5 ILKVEELNYNY---SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGIL----KPSSGRILFDGKPIDYS-RKG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 87 WRALRgEEMAMIFQDPmmtlnpvlrvDTQMVETVLaHHDVS---------RSQAMARALEVLTMVGIpsprERLRAYP-H 156
Cdd:PRK13636 77 LMKLR-ESVGMVFQDP----------DNQLFSASV-YQDVSfgavnlklpEDEVRKRVDNALKRTGI----EHLKDKPtH 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 157 ELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRI 236
Cdd:PRK13636 141 CLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRV 220
|
....*....
gi 1806544180 237 VETGTSKDV 245
Cdd:PRK13636 221 ILQGNPKEV 229
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
31-240 |
2.06e-23 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 95.64 E-value: 2.06e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 31 DLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPGrivEGAILFDGEDLRQADAKRwralrgEEMAMIFQD----PMMT- 105
Cdd:cd03298 18 DLTFAQGEITAIVGPSGSGKS-TLLNLIAGFETPQ---SGRVLINGVDVTAAPPAD------RPVSMLFQEnnlfAHLTv 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 106 -------LNPVLRVDTQmvetvlahhdvsRSQAMARALevlTMVGIPSPRERLrayPHELSGGMRQRVAIAIALLNSPRV 178
Cdd:cd03298 88 eqnvglgLSPGLKLTAE------------DRQAIEVAL---ARVGLAGLEKRL---PGELSGGERQRVALARVLVRDKPV 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1806544180 179 IIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETG 240
Cdd:cd03298 150 LLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
25-245 |
4.59e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 96.35 E-value: 4.59e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 25 KAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLR-QADAKRWRALRgEEMAMIFQDPm 103
Cdd:PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKS----TIMQLLNGLHVPTQGSVRVDDTLITsTSKNKDIKQIR-KKVGLVFQFP- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 104 mtlnpvlrvDTQMV-ETVLA-------HHDVSRSQAMARALEVLTMVGIPSprERLRAYPHELSGGMRQRVAIAIALLNS 175
Cdd:PRK13649 95 ---------ESQLFeETVLKdvafgpqNFGVSQEEAEALAREKLALVGISE--SLFEKNPFELSGGQMRRVAIAGILAME 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 176 PRVIIADEPTTALDVTIQAQILYEVRRLcRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDV 245
Cdd:PRK13649 164 PKILVLDEPTAGLDPKGRKELMTLFKKL-HQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
|
| oligo_HPY |
pfam08352 |
Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found ... |
237-301 |
5.90e-23 |
|
Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found towards the C-terminus of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid.
Pssm-ID: 400588 [Multi-domain] Cd Length: 65 Bit Score: 90.15 E-value: 5.90e-23
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1806544180 237 VETGTSKDVIGHALHPYTLGLMASIPSARGRGQPLAQIPGMTPSLLNLPQGCAFRQRCPRATDAC 301
Cdd:pfam08352 1 VEEGPTDDILENPLHPYTRALLNSVPRLDPPKRPLYTIPGNVPSLLELPEGCPFAPRCPFATEEC 65
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
6-217 |
6.64e-23 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 94.08 E-value: 6.64e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 6 PVLDVRNLKthfFTRAGVVkAVDGVDLYLRQGEILGLVGESGSGKSitgfSLM----GLLdepgRIVEGAILFDGEDLRQ 81
Cdd:COG4133 1 MMLEAENLS---CRRGERL-LFSGLSFTLAAGEALALTGPNGSGKT----TLLrilaGLL----PPSAGEVLWNGEPIRD 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 82 ADAKRWRALrgeemAMIFQDPMmtLNPVLRVdtqmVETVLAHHDVS-RSQAMARALEVLTMVGIpSPRERLRAypHELSG 160
Cdd:COG4133 69 AREDYRRRL-----AYLGHADG--LKPELTV----RENLRFWAALYgLRADREAIDEALEAVGL-AGLADLPV--RQLSA 134
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1806544180 161 GMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIwITHD 217
Cdd:COG4133 135 GQKRRVALARLLLSPAPLWLLDEPFTALDAAGVALLAELIAAHLARGGAVLL-TTHQ 190
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
25-237 |
7.95e-23 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 94.56 E-value: 7.95e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 25 KAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQADAKRWRALRgEEMAMIFQDPMM 104
Cdd:PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKS----TLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLR-RQIGMIFQDHHL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 105 TLNPVL--RVDTQMVETVLAHHDVSRsqamaRALEVLTMVGIpspRERLRAYPHELSGGMRQRVAIAIALLNSPRVIIAD 182
Cdd:PRK10908 91 LMDRTVydNVAIPLIIAGASGDDIRR-----RVSAALDKVGL---LDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLAD 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1806544180 183 EPTTALDVTIQAQILyevrRLCRE---TGTALIWITHDLAVVAGLADRIAVMYAGRIV 237
Cdd:PRK10908 163 EPTGNLDDALSEGIL----RLFEEfnrVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
39-245 |
1.01e-22 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 95.11 E-value: 1.01e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 39 ILGLVGESGSGKSitgfSLMGLLDEPGRI------VEGAILFDGEDLRQADAKRWRalrgEEMAMIFQDPmmtlNPVLRV 112
Cdd:PRK14246 38 IFGIMGPSGSGKS----TLLKVLNRLIEIydskikVDGKVLYFGKDIFQIDAIKLR----KEVGMVFQQP----NPFPHL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 113 DT-QMVETVLAHHDVSRSQAMARALE-VLTMVGI-PSPRERLRAYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALD 189
Cdd:PRK14246 106 SIyDNIAYPLKSHGIKEKREIKKIVEeCLRKVGLwKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMID 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1806544180 190 VTIQAQILYEVRRLCREtgTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDV 245
Cdd:PRK14246 186 IVNSQAIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
31-236 |
1.09e-22 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 93.77 E-value: 1.09e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 31 DLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPgriVEGAILFDGED-LRQADAKRwralrgeEMAMIFQD----PMMT 105
Cdd:TIGR01277 18 DLNVADGEIVAIMGPSGAGKS-TLLNLIAGFIEP---ASGSIKVNDQShTGLAPYQR-------PVSMLFQEnnlfAHLT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 106 --------LNPVLRVDTQMVETVlahHDVSRSqamaralevltmVGIPSPRERLrayPHELSGGMRQRVAIAIALLNSPR 177
Cdd:TIGR01277 87 vrqniglgLHPGLKLNAEQQEKV---VDAAQQ------------VGIADYLDRL---PEQLSGGQRQRVALARCLVRPNP 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1806544180 178 VIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRI 236
Cdd:TIGR01277 149 ILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-245 |
1.51e-22 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 94.46 E-value: 1.51e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 1 MTDkaPVLDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSL--MGLLDePGRIVEGAILFDGED 78
Cdd:PRK14239 1 MTE--PILQVSDLSVYY----NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSInrMNDLN-PEVTITGSIVYNGHN 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 79 L--RQADAKRWRalrgEEMAMIFQDPM---MTL--NPV--LRVDTQMVETVLaHHDVSRSQAMARALEVLtmvgipspRE 149
Cdd:PRK14239 74 IysPRTDTVDLR----KEIGMVFQQPNpfpMSIyeNVVygLRLKGIKDKQVL-DEAVEKSLKGASIWDEV--------KD 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 150 RLRAYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDvTIQAQILYEVRRLCRETGTALIwITHDLAVVAGLADRIA 229
Cdd:PRK14239 141 RLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALD-PISAGKIEETLLGLKDDYTMLL-VTRSMQQASRISDRTG 218
|
250
....*....|....*.
gi 1806544180 230 VMYAGRIVETGTSKDV 245
Cdd:PRK14239 219 FFLDGDLIEYNDTKQM 234
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
25-247 |
1.60e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 95.23 E-value: 1.60e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 25 KAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEPGRIVEgaiLFDGEDLRQADAKRWRALRgEEMAMIFQDPmm 104
Cdd:PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVT---VDDITITHKTKDKYIRPVR-KRIGMVFQFP-- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 105 tlnpvlrvdtqmvETVLAHHDVSRS-------------QAMARALEVLTMVGIPspRERLRAYPHELSGGMRQRVAIAIA 171
Cdd:PRK13646 95 -------------ESQLFEDTVEREiifgpknfkmnldEVKNYAHRLLMDLGFS--RDVMSQSPFQMSGGQMRKIAIVSI 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1806544180 172 LLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDVIG 247
Cdd:PRK13646 160 LAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
8-246 |
1.94e-22 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 93.76 E-value: 1.94e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFFTRagvvKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRQADAKRw 87
Cdd:cd03218 1 LRAENLSKRYGKR----KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV----KPDSGKILLDGQDITKLPMHK- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 88 RALRG-----EEmAMIFQDpmmtlnpvLRVDtQMVETVLAHHDVSRSQAMARALEVLTMVGIPSPRERLRAYpheLSGGM 162
Cdd:cd03218 72 RARLGigylpQE-ASIFRK--------LTVE-ENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASS---LSGGE 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 163 RQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLcRETGTAlIWIT-HDLAVVAGLADRIAVMYAGRIVETGT 241
Cdd:cd03218 139 RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKIL-KDRGIG-VLITdHNVRETLSITDRAYIIYEGKVLAEGT 216
|
....*
gi 1806544180 242 SKDVI 246
Cdd:cd03218 217 PEEIA 221
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
28-241 |
2.48e-22 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 97.20 E-value: 2.48e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 28 DGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDepgrIVEGAILFDGEDLR---QAdakrwrALRgEEMAMIFQDPmm 104
Cdd:COG5265 375 KGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYD----VTSGRILIDGQDIRdvtQA------SLR-AAIGIVPQDT-- 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 105 tlnpVLRVDT--------------QMVETV--LAH-HDVSRS--QAMAralevlTMVGipsprER-LRaypheLSGGMRQ 164
Cdd:COG5265 442 ----VLFNDTiayniaygrpdaseEEVEAAarAAQiHDFIESlpDGYD------TRVG-----ERgLK-----LSGGEKQ 501
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1806544180 165 RVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETgTALIwITHDLAVVAGlADRIAVMYAGRIVETGT 241
Cdd:COG5265 502 RVAIARTLLKNPPILIFDEATSALDSRTERAIQAALREVARGR-TTLV-IAHRLSTIVD-ADEILVLEAGRIVERGT 575
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
28-241 |
4.96e-22 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 92.82 E-value: 4.96e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 28 DGVDLYLRQGEILGLVGESGSGKSITGFSLMGLldePG-RIVEGAILFDGEDLRQADAKRwRALRGeeMAMIFQDPM--- 103
Cdd:COG0396 17 KGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGH---PKyEVTSGSILLDGEDILELSPDE-RARAG--IFLAFQYPVeip 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 104 -MTLNPVLRvdtqMVETVLAHHDVSRSQAMARALEVLTMVGIPspRERLRAYPHE-LSGGMRQRVAIA-IALLNsPRVII 180
Cdd:COG0396 91 gVSVSNFLR----TALNARRGEELSAREFLKLLKEKMKELGLD--EDFLDRYVNEgFSGGEKKRNEILqMLLLE-PKLAI 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1806544180 181 ADEPTTALDvtIQA-QILYE-VRRLcRETGTALIWITH-----DLAVvaglADRIAVMYAGRIVETGT 241
Cdd:COG0396 164 LDETDSGLD--IDAlRIVAEgVNKL-RSPDRGILIITHyqrilDYIK----PDFVHVLVDGRIVKSGG 224
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
7-239 |
1.48e-21 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 94.89 E-value: 1.48e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 7 VLDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLD--EPGRIVEGAILFDGEDLRqadA 84
Cdd:TIGR02633 1 LLEMKGIVKTF----GGVKALDGIDLEVRPGECVGLCGENGAGKS----TLMKILSgvYPHGTWDGEIYWSGSPLK---A 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 85 KRWRALRGEEMAMIFQDpmMTLNPVLRVdtqmVETVLAHHDVSRS------QAMA-RALEVLTMVGIP-SPRERLRAyph 156
Cdd:TIGR02633 70 SNIRDTERAGIVIIHQE--LTLVPELSV----AENIFLGNEITLPggrmayNAMYlRAKNLLRELQLDaDNVTRPVG--- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 157 ELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTiQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRI 236
Cdd:TIGR02633 141 DYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEK-ETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQH 219
|
...
gi 1806544180 237 VET 239
Cdd:TIGR02633 220 VAT 222
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
13-240 |
2.60e-21 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 90.47 E-value: 2.60e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 13 LKTHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdEP--GRI-VEGAILFDGedlRQADAKRWRA 89
Cdd:cd03267 23 LKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL-QPtsGEVrVAGLVPWKR---RKKFLRRIGV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 90 LRGEEMAMIFQDPMM-TLNpvlrvdtqmvetVLAH-HDVSRSQAMARALEVLTMVGIpsprERLRAYP-HELSGGMRQRV 166
Cdd:cd03267 99 VFGQKTQLWWDLPVIdSFY------------LLAAiYDLPPARFKKRLDELSELLDL----EELLDTPvRQLSLGQRMRA 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1806544180 167 AIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETG 240
Cdd:cd03267 163 EIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
20-241 |
3.64e-21 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 93.96 E-value: 3.64e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 20 RAGVVKAVDGVdlyLRQGEILGLVGESGSGKSitgfSLMGLL---DEPGRIVEGAILFDGedlRQADAKRWRALrgeeMA 96
Cdd:TIGR00955 37 RKHLLKNVSGV---AKPGELLAVMGSSGAGKT----TLMNALafrSPKGVKGSGSVLLNG---MPIDAKEMRAI----SA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 97 MIFQDPMmtLNPVLRVDTQMveTVLAH----HDVSRSQAMARALEVLTMVGIPSPRERLRAYPHE---LSGGMRQRVAIA 169
Cdd:TIGR00955 103 YVQQDDL--FIPTLTVREHL--MFQAHlrmpRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRvkgLSGGERKRLAFA 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1806544180 170 IALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGT 241
Cdd:TIGR00955 179 SELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGS 250
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
27-246 |
4.09e-21 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 90.53 E-value: 4.09e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 27 VDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPGrivEGAILFDGEDLRQAD----AKRwralrgeeMAMIFQDP 102
Cdd:COG4604 17 LDDVSLTIPKGGITALIGPNGAGKS-TLLSMISRLLPPD---SGEVLVDGLDVATTPsrelAKR--------LAILRQEN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 103 MMTLNpvLRV-------------------DTQMVEtvlahhdvsrsqamaRALEVLTMVGIpspRERlraYPHELSGGMR 163
Cdd:COG4604 85 HINSR--LTVrelvafgrfpyskgrltaeDREIID---------------EAIAYLDLEDL---ADR---YLDELSGGQR 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 164 QRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSK 243
Cdd:COG4604 142 QRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGTPE 221
|
...
gi 1806544180 244 DVI 246
Cdd:COG4604 222 EII 224
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
25-241 |
4.24e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 91.22 E-value: 4.24e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 25 KAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLL-DEPGRIVEGAILFDGEDLRQADAKRWRalrgEEMAMIFQDPM 103
Cdd:PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIiSETGQTIVGDYAIPANLKKIKEVKRLR----KEIGLVFQFPE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 104 MTLNpvlrvdTQMVETVLA----HHDVSRSQAMARALEVLTMVGIPspRERLRAYPHELSGGMRQRVAIAIALLNSPRVI 179
Cdd:PRK13645 101 YQLF------QETIEKDIAfgpvNLGENKQEAYKKVPELLKLVQLP--EDYVKRSPFELSGGQKRRVALAGIIAMDGNTL 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1806544180 180 IADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGT 241
Cdd:PRK13645 173 VLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
8-240 |
4.28e-21 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 89.12 E-value: 4.28e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKThfftRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLldePG-RIVEGAILFDGEDLRQADAKR 86
Cdd:cd03217 1 LEIKDLHV----SVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH---PKyEVTEGEILFKGEDITDLPPEE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 87 wRALRGeeMAMIFQDPM----MTLNPVLRvdtqmvetvlahhDVSrsqamaralevltmVGipsprerlraypheLSGGM 162
Cdd:cd03217 74 -RARLG--IFLAFQYPPeipgVKNADFLR-------------YVN--------------EG--------------FSGGE 109
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1806544180 163 RQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLcRETGTALIWITHDLAVVAGL-ADRIAVMYAGRIVETG 240
Cdd:cd03217 110 KKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKL-REEGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSG 187
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
5-265 |
4.51e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 90.93 E-value: 4.51e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 5 APVLDVRNLKTHFFTRAgvvkAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDE-PGRIVEGAILFDGEDL-RQA 82
Cdd:PRK14271 19 APAMAAVNLTLGFAGKT----VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKvSGYRYSGDVLLGGRSIfNYR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 83 DAKRWRalrgEEMAMIFQDPmmtlNPV-LRVDTQMVETVLAHHDVSRSQAMARALEVLTMVGI-PSPRERLRAYPHELSG 160
Cdd:PRK14271 95 DVLEFR----RRVGMLFQRP----NPFpMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLwDAVKDRLSDSPFRLSG 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 161 GMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCREtgTALIWITHDLAVVAGLADRIAVMYAGRIVETG 240
Cdd:PRK14271 167 GQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR--LTVIIVTHNLAQAARISDRAALFFDGRLVEEG 244
|
250 260
....*....|....*....|....*....
gi 1806544180 241 TSKDVIGHALHP----YTLGLMASIPSAR 265
Cdd:PRK14271 245 PTEQLFSSPKHAetarYVAGLSGDVKDAK 273
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
25-245 |
4.58e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 90.95 E-value: 4.58e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 25 KAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLD-EPGRIVEGAILFDGEDlRQADAKRWRalrgEEMAMIFQDPm 103
Cdd:PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQpTEGKVTVGDIVVSSTS-KQKEIKPVR----KKVGVVFQFP- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 104 mtlnpvlrvDTQMVE-TVLA-------HHDVSRSQAMARALEVLTMVGIPspRERLRAYPHELSGGMRQRVAIAIALLNS 175
Cdd:PRK13643 94 ---------ESQLFEeTVLKdvafgpqNFGIPKEKAEKIAAEKLEMVGLA--DEFWEKSPFELSGGQMRRVAIAGILAME 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1806544180 176 PRVIIADEPTTALD--VTIQAQILYEVrrlCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDV 245
Cdd:PRK13643 163 PEVLVLDEPTAGLDpkARIEMMQLFES---IHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
27-240 |
8.96e-21 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 88.69 E-value: 8.96e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 27 VDGVDLYLRQGEILGLVGESGSGKSiTGFSLM-GLLDePGRIVEGAILFDGEDLRQADAKRWRalrgeeMAMIFQDPMmt 105
Cdd:COG4136 17 LAPLSLTVAPGEILTLMGPSGSGKS-TLLAAIaGTLS-PAFSASGEVLLNGRRLTALPAEQRR------IGILFQDDL-- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 106 LNPVLrvdtqmveTVLAH------HDVSRSQAMARALEVLTMVGIPSPRERlraYPHELSGGMRQRVAIAIALLNSPRVI 179
Cdd:COG4136 87 LFPHL--------SVGENlafalpPTIGRAQRRARVEQALEEAGLAGFADR---DPATLSGGQRARVALLRALLAEPRAL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1806544180 180 IADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDlavvagLADRIAvmyAGRIVETG 240
Cdd:COG4136 156 LLDEPFSKLDAALRAQFREFVFEQIRQRGIPALLVTHD------EEDAPA---AGRVLDLG 207
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
26-241 |
1.04e-20 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 88.82 E-value: 1.04e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 26 AVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQADAKRWRalrgEEMAMIFQDPMMt 105
Cdd:cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKT----TLINLLMRFYDPQKGQILIDGIDIRDISRKSLR----SMIGVVLQDTFL- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 106 lnpvlrvdtqMVETVLAHHDVSRSQA-MARALEVLTMVGIPSPRERL-RAYPHE-------LSGGMRQRVAIAIALLNSP 176
Cdd:cd03254 89 ----------FSGTIMENIRLGRPNAtDEEVIEAAKEAGAHDFIMKLpNGYDTVlgenggnLSQGERQLLAIARAMLRDP 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1806544180 177 RVIIADEPTTALDVTIQAQILYEVRRLcRETGTALIwITHDLAVVAGlADRIAVMYAGRIVETGT 241
Cdd:cd03254 159 KILILDEATSNIDTETEKLIQEALEKL-MKGRTSII-IAHRLSTIKN-ADKILVLDDGKIIEEGT 220
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
31-249 |
1.08e-20 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 88.87 E-value: 1.08e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 31 DLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPGRiveGAILFDGED-LRQADAKRwralrgeEMAMIFQD----PMMT 105
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKS-TLLNLIAGFLTPAS---GSLTLNGQDhTTTPPSRR-------PVSMLFQEnnlfSHLT 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 106 --------LNPVLRVDTQMVETVlahhdvsrsQAMARalevltMVGIPSPRERLrayPHELSGGMRQRVAIAIALLNSPR 177
Cdd:PRK10771 88 vaqniglgLNPGLKLNAAQREKL---------HAIAR------QMGIEDLLARL---PGQLSGGQRQRVALARCLVREQP 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1806544180 178 VIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETG-TSKDVIGHA 249
Cdd:PRK10771 150 ILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGpTDELLSGKA 222
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
8-254 |
1.39e-20 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 89.13 E-value: 1.39e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKS--ITGFSLMGLLDEPGRiVEGAILFDGEDLRQADAK 85
Cdd:PRK14267 5 IETVNLRVYY----GSNHVIKGVDLKIPQNGVFALMGPSGCGKStlLRTFNRLLELNEEAR-VEGEVRLFGRNIYSPDVD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 86 RWRALRgeEMAMIFQDPM--------------MTLNPVLRVDTQMVETVlahhdvsrSQAMARAL---EVltmvgipspR 148
Cdd:PRK14267 80 PIEVRR--EVGMVFQYPNpfphltiydnvaigVKLNGLVKSKKELDERV--------EWALKKAAlwdEV---------K 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 149 ERLRAYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQI---LYEVRrlcreTGTALIWITHDLAVVAGLA 225
Cdd:PRK14267 141 DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIeelLFELK-----KEYTIVLVTHSPAQAARVS 215
|
250 260
....*....|....*....|....*....
gi 1806544180 226 DRIAVMYAGRIVETGTSKDVIGHALHPYT 254
Cdd:PRK14267 216 DYVAFLYLGKLIEVGPTRKVFENPEHELT 244
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
6-248 |
1.53e-20 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 88.55 E-value: 1.53e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 6 PVLDVRNLKTHFFTRagvvKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRQADAK 85
Cdd:COG1137 2 MTLEAENLVKSYGKR----TVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLV----KPDSGRIFLDGEDITHLPMH 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 86 RwRALRG------EemAMIFQDpmMTlnpvlrvdtqmVE----TVLAHHDVSRSQAMARALEVLTMVGIpsprERLRAYP 155
Cdd:COG1137 74 K-RARLGigylpqE--ASIFRK--LT-----------VEdnilAVLELRKLSKKEREERLEELLEEFGI----THLRKSK 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 156 -HELSGGMRQRVAIAIALLNSPRVIIADEPTTALD---VT-IQAQIlyevRRLcRETGTAlIWIT-HD----LAVVagla 225
Cdd:COG1137 134 aYSLSGGERRRVEIARALATNPKFILLDEPFAGVDpiaVAdIQKII----RHL-KERGIG-VLITdHNvretLGIC---- 203
|
250 260
....*....|....*....|...
gi 1806544180 226 DRIAVMYAGRIVETGTSKDVIGH 248
Cdd:COG1137 204 DRAYIISEGKVLAEGTPEEILNN 226
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
7-249 |
1.69e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 89.41 E-value: 1.69e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 7 VLDVRNLktHFFTRAGVvKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGL-LDEPGRI-VEGailfdgedlRQADA 84
Cdd:PRK13647 4 IIEVEDL--HFRYKDGT-KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIyLPQRGRVkVMG---------REVNA 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 85 KRWRALRGEeMAMIFQDPmmtlnpvlrvDTQmVETVLAHHDV---------SRSQAMARALEVLTMVGIPSPRERLrayP 155
Cdd:PRK13647 72 ENEKWVRSK-VGLVFQDP----------DDQ-VFSSTVWDDVafgpvnmglDKDEVERRVEEALKAVRMWDFRDKP---P 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 156 HELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCREtGTALIWITHDLAVVAGLADRIAVMYAGR 235
Cdd:PRK13647 137 YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGR 215
|
250
....*....|....*....
gi 1806544180 236 IVETG-----TSKDVIGHA 249
Cdd:PRK13647 216 VLAEGdksllTDEDIVEQA 234
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
26-263 |
2.41e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 88.89 E-value: 2.41e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 26 AVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDlrQADAKRWRALRgEEMAMIFQdpmmt 105
Cdd:PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLL----RPQKGKVLVSGID--TGDFSKLQGIR-KLVGIVFQ----- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 106 lNPVLRVDTQMVETVLAHHD----VSRSQAMARALEVLTMVGIPSPRERlraYPHELSGGMRQRVAIAIALLNSPRVIIA 181
Cdd:PRK13644 85 -NPETQFVGRTVEEDLAFGPenlcLPPIEIRKRVDRALAEIGLEKYRHR---SPKTLSGGQGQCVALAGILTMEPECLIF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 182 DEPTTALDVTIQAQILYEVRRLcRETGTALIWITHDLAVVAgLADRIAVMYAGRIVETGTSKDVIGHaLHPYTLGLmaSI 261
Cdd:PRK13644 161 DEVTSMLDPDSGIAVLERIKKL-HEKGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENVLSD-VSLQTLGL--TP 235
|
..
gi 1806544180 262 PS 263
Cdd:PRK13644 236 PS 237
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
15-245 |
3.21e-20 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 89.76 E-value: 3.21e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 15 THFFTRagvVKAVDGVDLYLRQGEILGLVGESGSGKSItgfslmgLLdepgRIV-------EGAILFDGEDLRQADAkrw 87
Cdd:PRK10851 9 KKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTT-------LL----RIIaglehqtSGHIRFHGTDVSRLHA--- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 88 ralRGEEMAMIFQDPMMTLNPVLRVDTQMVETVLAHHDVSRSQAM-ARALEVLTMVGIPSPRERlraYPHELSGGMRQRV 166
Cdd:PRK10851 72 ---RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIkAKVTQLLEMVQLAHLADR---YPAQLSGGQKQRV 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 167 AIAIALLNSPRVIIADEPTTALDvtiqAQILYEVRRLCRETGTAL----IWITHDLAVVAGLADRIAVMYAGRIVETGTS 242
Cdd:PRK10851 146 ALARALAVEPQILLLDEPFGALD----AQVRKELRRWLRQLHEELkftsVFVTHDQEEAMEVADRVVVMSQGNIEQAGTP 221
|
...
gi 1806544180 243 KDV 245
Cdd:PRK10851 222 DQV 224
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
6-237 |
3.52e-20 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 87.63 E-value: 3.52e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 6 PVLDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQadak 85
Cdd:PRK11614 4 VMLSFDKVSAHY----GKIQALHEVSLHINQGEIVTLIGANGAGKT----TLLGTLCGDPRATSGRIVFDGKDITD---- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 86 rWRALRgeemamIFQDPMMTLNPVLRVDTQM-VETVLAHHD--VSRSQAMARALEVLTMvgIPSPRERLRAYPHELSGGM 162
Cdd:PRK11614 72 -WQTAK------IMREAVAIVPEGRRVFSRMtVEENLAMGGffAERDQFQERIKWVYEL--FPRLHERRIQRAGTMSGGE 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1806544180 163 RQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLcRETGTALIWITHDLAVVAGLADRIAVMYAGRIV 237
Cdd:PRK11614 143 QQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQL-REQGMTIFLVEQNANQALKLADRGYVLENGHVV 216
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
7-236 |
4.31e-20 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 90.37 E-value: 4.31e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 7 VLDVRNLKTHFFTRAGVvKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdePGRiVEGAILFDGEDLR---QAD 83
Cdd:PRK13549 259 ILEVRNLTAWDPVNPHI-KRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY--PGR-WEGEIFIDGKPVKirnPQQ 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 84 AKRwralrgEEMAMIFQD-------PMM------TLnPVLRVDTQMVETVLAHHDVSRSQAMARaLEVLTmvgiPSPRER 150
Cdd:PRK13549 335 AIA------QGIAMVPEDrkrdgivPVMgvgkniTL-AALDRFTGGSRIDDAAELKTILESIQR-LKVKT----ASPELA 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 151 LRayphELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCREtGTALIWITHDLAVVAGLADRIAV 230
Cdd:PRK13549 403 IA----RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLV 477
|
....*.
gi 1806544180 231 MYAGRI 236
Cdd:PRK13549 478 MHEGKL 483
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
29-245 |
8.22e-20 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 87.37 E-value: 8.22e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 29 GVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRQAdaKR-WRALRgEEMAMIFQDPmmtln 107
Cdd:PRK13638 19 GLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL----RPQKGAVLWQGKPLDYS--KRgLLALR-QQVATVFQDP----- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 108 pvlrvDTQMVET--------VLAHHDVSRSQAMARALEVLTMVGIpsprERLRAYPHE-LSGGMRQRVAIAIALLNSPRV 178
Cdd:PRK13638 87 -----EQQIFYTdidsdiafSLRNLGVPEAEITRRVDEALTLVDA----QHFRHQPIQcLSHGQKKRVAIAGALVLQARY 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1806544180 179 IIADEPTTALDVTIQAQILYEVRRLCREtGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDV 245
Cdd:PRK13638 158 LLLDEPTAGLDPAGRTQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEV 223
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
30-240 |
1.14e-19 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 88.16 E-value: 1.14e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 30 VDLYLRQGEILGLVGESGSGKSITGFSLMGLLDepgrIVEGAILFDGEdlRQAD---AKRwralrgeEMAMIFQDpmMTL 106
Cdd:PRK11000 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED----ITSGDLFIGEK--RMNDvppAER-------GVGMVFQS--YAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 107 NPVLRVDTQMVETV-LAHHDVS-RSQAMARALEVLTMVGIpsprerLRAYPHELSGGMRQRVAIAIALLNSPRVIIADEP 184
Cdd:PRK11000 87 YPHLSVAENMSFGLkLAGAKKEeINQRVNQVAEVLQLAHL------LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1806544180 185 TTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETG 240
Cdd:PRK11000 161 LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
26-241 |
1.35e-19 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 85.62 E-value: 1.35e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 26 AVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDepgrIVEGAILFDGEDLRQADAKRWRalrgEEMAMIFQDPmmt 105
Cdd:cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE----LSSGSILIDGVDISKIGLHDLR----SRISIIPQDP--- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 106 lnpVLRVDTqmVETVLAHHDVSRSQAMARALEvltMVG----IPSPRERLRAYPHE----LSGGMRQRVAIAIALLNSPR 177
Cdd:cd03244 88 ---VLFSGT--IRSNLDPFGEYSDEELWQALE---RVGlkefVESLPGGLDTVVEEggenLSVGQRQLLCLARALLRKSK 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1806544180 178 VIIADEPTTALDVTIQAQIlyevRRLCRE--TGTALIWITHDLAVVAGlADRIAVMYAGRIVETGT 241
Cdd:cd03244 160 ILVLDEATASVDPETDALI----QKTIREafKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS 220
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
16-241 |
1.55e-19 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 87.45 E-value: 1.55e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 16 HFFTRAG-VVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdEPgriVEGAILFDGED---LRQADAKRwralr 91
Cdd:COG4586 26 GLFRREYrEVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGIL-VP---TSGEVRVLGYVpfkRRKEFARR----- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 92 geeMAMIF----QdpmmtlnpvLRVDTQMVET--VLAH-HDVSRSQAMARALEVLTMVGIpsprERLRAYP-HELSGGMR 163
Cdd:COG4586 97 ---IGVVFgqrsQ---------LWWDLPAIDSfrLLKAiYRIPDAEYKKRLDELVELLDL----GELLDTPvRQLSLGQR 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1806544180 164 QRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGT 241
Cdd:COG4586 161 MRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRERGTTILLTSHDMDDIEALCDRVIVIDHGRIIYDGS 238
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
10-246 |
1.69e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 87.06 E-value: 1.69e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 10 VRNLkTHFFTR--AGVVKAVDGVDLYLRQGEILGLVGESGSGKS--ITGFSLMgLLDEPGRIVegAILFDGEDLRQADAK 85
Cdd:PRK13651 5 VKNI-VKIFNKklPTELKALDNVSVEINQGEFIAIIGQTGSGKTtfIEHLNAL-LLPDTGTIE--WIFKDEKNKKKTKEK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 86 RW------------------RALRgEEMAMIFQdpmmtlnpvlRVDTQMVETVLAH--------HDVSRSQAMARALEVL 139
Cdd:PRK13651 81 EKvleklviqktrfkkikkiKEIR-RRVGVVFQ----------FAEYQLFEQTIEKdiifgpvsMGVSKEEAKKRAAKYI 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 140 TMVGIPspRERLRAYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLcRETGTALIWITHDLA 219
Cdd:PRK13651 150 ELVGLD--ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNL-NKQGKTIILVTHDLD 226
|
250 260
....*....|....*....|....*..
gi 1806544180 220 VVAGLADRIAVMYAGRIVETGTSKDVI 246
Cdd:PRK13651 227 NVLEWTKRTIFFKDGKIIKDGDTYDIL 253
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
24-240 |
1.71e-19 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 85.40 E-value: 1.71e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 24 VKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEPGRIvEGAILFDGEDLRqadakrwRALRGEEMAMIFQDPm 103
Cdd:cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT-SGQILFNGQPRK-------PDQFQKCVAYVRQDD- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 104 mTLNPVLRVD---TQMVETVLAHHDVSRSQAMARALEVLTMVGIPSPRERLRAYpheLSGGMRQRVAIAIALLNSPRVII 180
Cdd:cd03234 91 -ILLPGLTVRetlTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKG---ISGGERRRVSIAVQLLWDPKVLI 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 181 ADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETG 240
Cdd:cd03234 167 LDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
7-250 |
1.91e-19 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 88.73 E-value: 1.91e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 7 VLDVRNLKTHFFTRAGVvKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdePGRIvEGAILFDGedlRQADAKR 86
Cdd:TIGR02633 257 ILEARNLTCWDVINPHR-KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAY--PGKF-EGNVFING---KPVDIRN 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 87 WRALRGEEMAMIFQD-PMMTLNPVLRVDTQMVETVLAHHdVSRSQAMARALEVLTMVGIpsprERLR---AYPH----EL 158
Cdd:TIGR02633 330 PAQAIRAGIAMVPEDrKRHGIVPILGVGKNITLSVLKSF-CFKMRIDAAAELQIIGSAI----QRLKvktASPFlpigRL 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 159 SGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCREtGTALIWITHDLAVVAGLADRIAVMYAGRIve 238
Cdd:TIGR02633 405 SGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGEGKL-- 481
|
250
....*....|..
gi 1806544180 239 tgtSKDVIGHAL 250
Cdd:TIGR02633 482 ---KGDFVNHAL 490
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
26-248 |
2.18e-19 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 88.54 E-value: 2.18e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 26 AVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQAdakRWRALRgEEMAMIFQdpmmt 105
Cdd:PRK11176 358 ALRNINFKIPAGKTVALVGRSGSGKS----TIANLLTRFYDIDEGEILLDGHDLRDY---TLASLR-NQVALVSQ----- 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 106 lNPVLRVDTQMVETVLAHHDV-SRSQ-----AMARALEVL--------TMVGipsprerlrayphE----LSGGMRQRVA 167
Cdd:PRK11176 425 -NVHLFNDTIANNIAYARTEQySREQieeaaRMAYAMDFInkmdngldTVIG-------------EngvlLSGGQRQRIA 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 168 IAIALL-NSPrVIIADEPTTALDV----TIQAQiLYEVRRlcreTGTALIwITHDLAVVAGlADRIAVMYAGRIVETGTS 242
Cdd:PRK11176 491 IARALLrDSP-ILILDEATSALDTeserAIQAA-LDELQK----NRTSLV-IAHRLSTIEK-ADEILVVEDGEIVERGTH 562
|
....*.
gi 1806544180 243 KDVIGH 248
Cdd:PRK11176 563 AELLAQ 568
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
24-239 |
2.82e-19 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 88.04 E-value: 2.82e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 24 VKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQADAkrwRALRGEEMAMIFQDpm 103
Cdd:PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKS----TLLKILSGNYQPDAGSILIDGQEMRFAST---TAALAAGVAIIYQE-- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 104 MTLNPVLRVDTQMVETVLAHHD--VSRSQAMARALEVLTMVGIP-SPRERLRayphELSGGMRQRVAIAIALLNSPRVII 180
Cdd:PRK11288 88 LHLVPEMTVAENLYLGQLPHKGgiVNRRLLNYEAREQLEHLGVDiDPDTPLK----YLSIGQRQMVEIAKALARNARVIA 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1806544180 181 ADEPTTALDVTiQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVET 239
Cdd:PRK11288 164 FDEPTSSLSAR-EIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
6-245 |
2.88e-19 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 88.30 E-value: 2.88e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 6 PVLDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQADAK 85
Cdd:PRK09700 4 PYISMAGIGKSF----GPVHALKSVNLTVYPGEIHALLGENGAGKS----TLMKVLSGIHEPTKGTITINNINYNKLDHK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 86 RWRALrgeEMAMIFQD----PMMTLNPVLRVDTQMVETVLAHHDVSRSQAMARALEVLTMVGIpspRERLRAYPHELSGG 161
Cdd:PRK09700 76 LAAQL---GIGIIYQElsviDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGL---KVDLDEKVANLSIS 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 162 MRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLcRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGT 241
Cdd:PRK09700 150 HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQL-RKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGM 228
|
....
gi 1806544180 242 SKDV 245
Cdd:PRK09700 229 VSDV 232
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
15-239 |
6.00e-19 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 84.37 E-value: 6.00e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 15 THFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPGrivEGAILFDGEDLRQADAKRwralrgee 94
Cdd:PRK11248 5 SHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKT-TLLNLIAGFVPYQ---HGSITLDGKPVEGPGAER-------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 95 mAMIFQDPmmTLNPVLRVDTQmVETVLAHHDVSRSQAMARALEVLTMVGIPSPRERlraYPHELSGGMRQRVAIAIALLN 174
Cdd:PRK11248 73 -GVVFQNE--GLLPWRNVQDN-VAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR---YIWQLSGGQRQRVGIARALAA 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1806544180 175 SPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMY--AGRIVET 239
Cdd:PRK11248 146 NPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSpgPGRVVER 212
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
27-236 |
7.04e-19 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 82.26 E-value: 7.04e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 27 VDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRQADAKRWRALRGEEMamifQDpmmtl 106
Cdd:cd03246 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL----RPTSGRVRLDGADISQWDPNELGDHVGYLP----QD----- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 107 npVLRVDTQMVETVLahhdvsrsqamaralevltmvgipsprerlrayphelSGGMRQRVAIAIALLNSPRVIIADEPTT 186
Cdd:cd03246 85 --DELFSGSIAENIL-------------------------------------SGGQRQRLGLARALYGNPRILVLDEPNS 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1806544180 187 ALDVTIQAQILYEVRRLcRETGTALIWITHDLAVVAgLADRIAVMYAGRI 236
Cdd:cd03246 126 HLDVEGERALNQAIAAL-KAAGATRIVIAHRPETLA-SADRILVLEDGRV 173
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
8-246 |
8.29e-19 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 86.78 E-value: 8.29e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEP---GRIVEGAIL----------- 73
Cdd:TIGR03269 1 IEVKNLTKKF----DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEptsGRIIYHVALcekcgyverps 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 74 FDGE--------------DLRQADAKRWRALRgEEMAMIFQDPMmtlnpVLRVDTQMVETVL-AHHDV--SRSQAMARAL 136
Cdd:TIGR03269 77 KVGEpcpvcggtlepeevDFWNLSDKLRRRIR-KRIAIMLQRTF-----ALYGDDTVLDNVLeALEEIgyEGKEAVGRAV 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 137 EVLTMVGIpspRERLRAYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDvTIQAQILYE-VRRLCRETGTALIWIT 215
Cdd:TIGR03269 151 DLIEMVQL---SHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLD-PQTAKLVHNaLEEAVKASGISMVLTS 226
|
250 260 270
....*....|....*....|....*....|.
gi 1806544180 216 HDLAVVAGLADRIAVMYAGRIVETGTSKDVI 246
Cdd:TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVV 257
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
29-243 |
9.12e-19 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 87.08 E-value: 9.12e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 29 GVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPgriVEGAILFDGEDLRQADAKRWR---ALRGEEmamifqdpmmt 105
Cdd:TIGR00958 499 GLTFTLHPGEVVALVGPSGSGKS-TVAALLQNLYQP---TGGQVLLDGVPLVQYDHHYLHrqvALVGQE----------- 563
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 106 lnPVL--RVDTQMVETVLAHHDVSRSQAMARALEVLTMVGipsprERLRAYPHE-------LSGGMRQRVAIAIALLNSP 176
Cdd:TIGR00958 564 --PVLfsGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIM-----EFPNGYDTEvgekgsqLSGGQKQRIAIARALVRKP 636
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1806544180 177 RVIIADEPTTALDVTIQaQILYEVRrlCRETGTALIwITHDLAVVAGlADRIAVMYAGRIVETGTSK 243
Cdd:TIGR00958 637 RVLILDEATSALDAECE-QLLQESR--SRASRTVLL-IAHRLSTVER-ADQILVLKKGSVVEMGTHK 698
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
7-245 |
9.67e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 85.29 E-value: 9.67e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 7 VLDVRNLKTHFFTR-AGVVKAVDGVDLYLRQGEILGLVGESGSGKS--ITGFSlmGLLDEP------GRIVEGA---ILF 74
Cdd:PRK13631 21 ILRVKNLYCVFDEKqENELVALNNISYTFEKNKIYFIIGNSGSGKStlVTHFN--GLIKSKygtiqvGDIYIGDkknNHE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 75 DGEDLRQADAKRWRALRgEEMAMIFQDPMMTL-NPVLRVDTQMVETVLAhhdVSRSQAMARALEVLTMVGIPSPRerLRA 153
Cdd:PRK13631 99 LITNPYSKKIKNFKELR-RRVSMVFQFPEYQLfKDTIEKDIMFGPVALG---VKKSEAKKLAKFYLNKMGLDDSY--LER 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 154 YPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILyEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYA 233
Cdd:PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMM-QLILDAKANNKTVFVITHTMEHVLEVADEVIVMDK 251
|
250
....*....|..
gi 1806544180 234 GRIVETGTSKDV 245
Cdd:PRK13631 252 GKILKTGTPYEI 263
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
25-271 |
9.91e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 84.50 E-value: 9.91e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 25 KAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLR-QADAKRWRALRgEEMAMIFQDPm 103
Cdd:PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKS----TLMQHFNALLKPSSGTITIAGYHITpETGNKNLKKLR-KKVSLVFQFP- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 104 mtlnpvlrvDTQMVE-TVLahHDV---------SRSQAMARALEVLTMVGIPSprERLRAYPHELSGGMRQRVAIAIALL 173
Cdd:PRK13641 95 ---------EAQLFEnTVL--KDVefgpknfgfSEDEAKEKALKWLKKVGLSE--DLISKSPFELSGGQMRRVAIAGVMA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 174 NSPRVIIADEPTTALDVTIQAQiLYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDVIG------ 247
Cdd:PRK13641 162 YEPEILCLDEPAAGLDPEGRKE-MMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSdkewlk 240
|
250 260
....*....|....*....|....*...
gi 1806544180 248 -HALHPYTLGLMASIPSARG---RGQPL 271
Cdd:PRK13641 241 kHYLDEPATSRFASKLEKGGfkfSEMPL 268
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
24-239 |
3.62e-18 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 84.84 E-value: 3.62e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 24 VKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLD--EPGRIVEGAILFDGE-----DLRQADAkrwralRG---- 92
Cdd:NF040905 14 VKALDDVNLSVREGEIHALCGENGAGKS----TLMKVLSgvYPHGSYEGEILFDGEvcrfkDIRDSEA------LGivii 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 93 -EEMAMIfqdPMMTL-------NPVlrvdtqmvetvlAHHDV-SRSQAMARALEVLTMVGipsprerLRAYPHELSG--- 160
Cdd:NF040905 84 hQELALI---PYLSIaeniflgNER------------AKRGViDWNETNRRARELLAKVG-------LDESPDTLVTdig 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 161 -GMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLcRETGTALIWITHDLAVVAGLADRIAVMYAGRIVET 239
Cdd:NF040905 142 vGKQQLVEIAKALSKDVKLLILDEPTAALNEEDSAALLDLLLEL-KAQGITSIIISHKLNEIRRVADSITVLRDGRTIET 220
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
8-236 |
4.89e-18 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 82.03 E-value: 4.89e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFFTRAgvvkAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPGrivEGAILFDGEDLRQADakrw 87
Cdd:PRK11247 13 LLLNAVSKRYGERT----VLNQLDLHIPAGQFVAVVGRSGCGKS-TLLRLLAGLETPS---AGELLAGTAPLAEAR---- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 88 ralrgEEMAMIFQDPmmTLNPVLRVdtqmVETV---LahhdvsRSQAMARALEVLTMVGIPsprERLRAYPHELSGGMRQ 164
Cdd:PRK11247 81 -----EDTRLMFQDA--RLLPWKKV----IDNVglgL------KGQWRDAALQALAAVGLA---DRANEWPAALSGGQKQ 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1806544180 165 RVAIAIALLNSPRVIIADEPTTALD--VTIQAQILYEvrRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRI 236
Cdd:PRK11247 141 RVALARALIHRPGLLLLDEPLGALDalTRIEMQDLIE--SLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
25-240 |
1.14e-17 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 79.28 E-value: 1.14e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 25 KAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQADAkrwrALRgEEMAMIFQDPMM 104
Cdd:cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKS----TLLQLLTGDLKPQQGEITLDGVPVSDLEK----ALS-SLISVLNQRPYL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 105 tlnpvlrVDTQMVETVlahhdvsrsqamaralevltmvGIPsprerlraypheLSGGMRQRVAIAIALLNSPRVIIADEP 184
Cdd:cd03247 87 -------FDTTLRNNL----------------------GRR------------FSGGERQRLALARILLQDAPIVLLDEP 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1806544180 185 TTALDVTIQAQIL---YEVRRlcretGTALIWITHDLAVVAGlADRIAVMYAGRIVETG 240
Cdd:cd03247 126 TVGLDPITERQLLsliFEVLK-----DKTLIWITHHLTGIEH-MDKILFLENGKIIMQG 178
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
1-217 |
1.44e-17 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 80.14 E-value: 1.44e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 1 MTDKAPVLDVRNLktHFftRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPGRiveGAILFDGEDLR 80
Cdd:PRK10247 1 MQENSPLLQLQNV--GY--LAGDAKILNNISFSLRAGEFKLITGPSGCGKS-TLLKIVASLISPTS---GTLLFEGEDIS 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 81 QADAKRWRalrgEEMAMIFQDPMM---TLNPVLRVDTQMvetvlaHHDVSRSQAMARALEVLTMvgipsPRERLRAYPHE 157
Cdd:PRK10247 73 TLKPEIYR----QQVSYCAQTPTLfgdTVYDNLIFPWQI------RNQQPDPAIFLDDLERFAL-----PDTILTKNIAE 137
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 158 LSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHD 217
Cdd:PRK10247 138 LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
1-245 |
1.70e-17 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 80.85 E-value: 1.70e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 1 MTDKAPVLDVRNLKTHFFTRagvvKAVDGVDLYLRQGEILGLVGESGSGKS--ITGFSLMGLLDEPGRiVEGAILFDGED 78
Cdd:PRK14258 1 MSKLIPAIKVNNLSFYYDTQ----KILEGVSMEIYQSKVTAIIGPSGCGKStfLKCLNRMNELESEVR-VEGRVEFFNQN 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 79 L--RQADAKRWRalrgEEMAMIFQDPmmTLNPVLRVDTQM--VETVLAHHDVSRSQAMARALEVLTMvgIPSPRERLRAY 154
Cdd:PRK14258 76 IyeRRVNLNRLR----RQVSMVHPKP--NLFPMSVYDNVAygVKIVGWRPKLEIDDIVESALKDADL--WDEIKHKIHKS 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 155 PHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYA- 233
Cdd:PRK14258 148 ALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGn 227
|
250
....*....|....*.
gi 1806544180 234 ----GRIVETGTSKDV 245
Cdd:PRK14258 228 enriGQLVEFGLTKKI 243
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
8-241 |
2.25e-17 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 78.99 E-value: 2.25e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFftRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDepgrIVEGAILFDGEDLRQADAKRW 87
Cdd:cd03369 7 IEVENLSVRY--APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE----AEEGKIEIDGIDISTIPLEDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 88 RalrgEEMAMIFQDPmmtlnpvlrvdTQMVETVLAHHDVSRSQAMARALEVLtmvgipspreRLRAYPHELSGGMRQRVA 167
Cdd:cd03369 81 R----SSLTIIPQDP-----------TLFSGTIRSNLDPFDEYSDEEIYGAL----------RVSEGGLNLSQGQRQLLC 135
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1806544180 168 IAIALLNSPRVIIADEPTTALDVTIQAQIlyevRRLCRE--TGTALIWITHDLAVVAGLaDRIAVMYAGRIVETGT 241
Cdd:cd03369 136 LARALLKRPRVLVLDEATASIDYATDALI----QKTIREefTNSTILTIAHRLRTIIDY-DKILVMDAGEVKEYDH 206
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
8-240 |
2.34e-17 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 81.71 E-value: 2.34e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSitgfslMGLLdePGRIVegailfdGEDlrqADAKRW 87
Cdd:NF000106 14 VEVRGLVKHF----GEVKAVDGVDLDVREGTVLGVLGP*GAA**------RGAL--PAHV*-------GPD---AGRRPW 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 88 RALRGEEMAMIFQDPMMTLNPVL---------RVDTQMVETVLahhDVSRSQAMARALEVLTMVGIPSPRERLRAyphEL 158
Cdd:NF000106 72 RF*TWCANRRALRRTIG*HRPVR*grresfsgRENLYMIGR*L---DLSRKDARARADELLERFSLTEAAGRAAA---KY 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 159 SGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIwITHDLAVVAGLADRIAVMYAGRIVE 238
Cdd:NF000106 146 SGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRDGATVLL-TTQYMEEAEQLAHELTVIDRGRVIA 224
|
..
gi 1806544180 239 TG 240
Cdd:NF000106 225 DG 226
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
7-237 |
2.39e-17 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 78.75 E-value: 2.39e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 7 VLDVRNLKthFFTRAGVVKA----VDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEPGriVEGAILFDGEDLrqa 82
Cdd:cd03213 3 TLSFRNLT--VTVKSSPSKSgkqlLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG--VSGEVLINGRPL--- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 83 DAKRWRALrgeeMAMIFQDPMmtLNPVLRVDtqmvetvlahhdvsrsQAMARALEvltmvgipsprerLRAypheLSGGM 162
Cdd:cd03213 76 DKRSFRKI----IGYVPQDDI--LHPTLTVR----------------ETLMFAAK-------------LRG----LSGGE 116
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1806544180 163 RQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCrETGTALIWITHDL-AVVAGLADRIAVMYAGRIV 237
Cdd:cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLA-DTGRTIICSIHQPsSEIFELFDKLLLLSQGRVI 191
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
36-289 |
2.54e-17 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 80.22 E-value: 2.54e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 36 QGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQADAKRWralrGEEMAMIFQD-PM---MTLNPVLR 111
Cdd:PRK10575 36 AGKVTGLIGHNGSGKS----TLLKMLGRHQPPSEGEILLDAQPLESWSSKAF----ARKVAYLPQQlPAaegMTVRELVA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 112 VDTQMVETVLAHHDVSRSQamaRALEVLTMVGIPSPRERLrayPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVT 191
Cdd:PRK10575 108 IGRYPWHGALGRFGAADRE---KVEEAISLVGLKPLAHRL---VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIA 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 192 IQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTskdvighalhpytlglmasiPSARGRGQPL 271
Cdd:PRK10575 182 HQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGT--------------------PAELMRGETL 241
|
250
....*....|....*...
gi 1806544180 272 AQIPGMTPSLLNLPQGCA 289
Cdd:PRK10575 242 EQIYGIPMGILPHPAGAA 259
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
29-236 |
2.61e-17 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 79.44 E-value: 2.61e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 29 GVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQADAKRWRalrgEEMAMIFQDPM----- 103
Cdd:cd03248 32 DVSFTLHPGEVTALVGPSGSGKS----TVVALLENFYQPQGGQVLLDGKPISQYEHKYLH----SKVSLVGQEPVlfars 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 104 --------MTLNPVLRVdTQMVETVLAHHDVSRsqamaRALEVLTMVGipsprERlrayPHELSGGMRQRVAIAIALLNS 175
Cdd:cd03248 104 lqdniaygLQSCSFECV-KEAAQKAHAHSFISE-----LASGYDTEVG-----EK----GSQLSGGQKQRVAIARALIRN 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1806544180 176 PRVIIADEPTTALDVTIQAQI---LYEvrrlCRETGTALIwITHDLAVVAGlADRIAVMYAGRI 236
Cdd:cd03248 169 PQVLILDEATSALDAESEQQVqqaLYD----WPERRTVLV-IAHRLSTVER-ADQILVLDGGRI 226
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
8-237 |
4.96e-17 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 79.36 E-value: 4.96e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFFtrAGVV---KAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLdePGRIV--EGAILFDGEDL-RQ 81
Cdd:COG1101 2 LELKNLSKTFN--PGTVnekRALDGLNLTIEEGDFVTVIGSNGAGKS----TLLNAI--AGSLPpdSGSILIDGKDVtKL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 82 ADAKRWRALrgeemAMIFQDPMMTLNPVLRVDTQMVetvLAHHD---------VSRSQ-AMARA-LEVLTMvGIPsprER 150
Cdd:COG1101 74 PEYKRAKYI-----GRVFQDPMMGTAPSMTIEENLA---LAYRRgkrrglrrgLTKKRrELFRElLATLGL-GLE---NR 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 151 LRAYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETG-TALIwITHDLAVVAGLADRIA 229
Cdd:COG1101 142 LDTKVGLLSGGQRQALSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNlTTLM-VTHNMEQALDYGNRLI 220
|
....*...
gi 1806544180 230 VMYAGRIV 237
Cdd:COG1101 221 MMHEGRII 228
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
5-248 |
5.16e-17 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 79.85 E-value: 5.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 5 APVLDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEPGriveGAILFDGEDLRQAdA 84
Cdd:PRK13537 5 VAPIDFRNVEKRY----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDA----GSISLCGEPVPSR-A 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 85 KRWRALRGEEMAMIFQDPMMTLNPVLRVDTQmvetvlaHHDVSRSQAMARALEVLTMVGIPSpreRLRAYPHELSGGMRQ 164
Cdd:PRK13537 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGR-------YFGLSAAAARALVPPLLEFAKLEN---KADAKVGELSGGMKR 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 165 RVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIwITHDLAVVAGLADRIAVMYAGRIVETGTSKD 244
Cdd:PRK13537 146 RLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILL-TTHFMEEAERLCDRLCVIEEGRKIAEGAPHA 224
|
....
gi 1806544180 245 VIGH 248
Cdd:PRK13537 225 LIES 228
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
5-236 |
6.00e-17 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 81.25 E-value: 6.00e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 5 APVLDVRNLKTHFFTRagvvkavdgVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEPGriveGAILFDGEDLRQADA 84
Cdd:PRK15439 266 APVLTVEDLTGEGFRN---------ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARG----GRIMLNGKEINALST 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 85 KRwRALRG-------EEMAMIFQDPMMTLNPVlrvdtqmvetVLAHHDVSRSQAMARALEVLtmvgipsprERLRA---- 153
Cdd:PRK15439 333 AQ-RLARGlvylpedRQSSGLYLDAPLAWNVC----------ALTHNRRGFWIKPARENAVL---------ERYRRalni 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 154 -YPHE------LSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQIlYEVRRLCRETGTALIWITHDLAVVAGLAD 226
Cdd:PRK15439 393 kFNHAeqaartLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDI-YQLIRSIAAQNVAVLFISSDLEEIEQMAD 471
|
250
....*....|
gi 1806544180 227 RIAVMYAGRI 236
Cdd:PRK15439 472 RVLVMHQGEI 481
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
23-241 |
6.54e-17 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 81.04 E-value: 6.54e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 23 VVKAVDG------VDLYLRQGEILGLVGESGSGKSitgfSLMGLLdePGRI-VEGAILFDGEDLRQADAKRWRalrgEEM 95
Cdd:PRK11174 356 EILSPDGktlagpLNFTLPAGQRIALVGPSGAGKT----SLLNAL--LGFLpYQGSLKINGIELRELDPESWR----KHL 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 96 AMIFQDPMMtLNPVLRvdtqmvETV-LAHHDVSRSQAMArALEvltmvgipsprerlRAYPHE----------------- 157
Cdd:PRK11174 426 SWVGQNPQL-PHGTLR------DNVlLGNPDASDEQLQQ-ALE--------------NAWVSEflpllpqgldtpigdqa 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 158 --LSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALiwITHDLAVVAGLaDRIAVMYAGR 235
Cdd:PRK11174 484 agLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLM--VTHQLEDLAQW-DQIWVMQDGQ 560
|
....*.
gi 1806544180 236 IVETGT 241
Cdd:PRK11174 561 IVQQGD 566
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
16-275 |
6.96e-17 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 79.10 E-value: 6.96e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 16 HFFTRAGVVkaVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEPGR----IVEGAILFDGEDLRQADAKRWRALR 91
Cdd:PRK13547 8 HVARRHRAI--LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAprgaRVTGDVTLNGEPLAAIDAPRLARLR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 92 G-----EEMAMIFQ-DPMMTLNpvlRVDTQMVETVLAHHDVS-RSQAMARAlEVLTMVGipspRERLrayphELSGGMRQ 164
Cdd:PRK13547 86 AvlpqaAQPAFAFSaREIVLLG---RYPHARRAGALTHRDGEiAWQALALA-GATALVG----RDVT-----TLSGGELA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 165 RVAIAIAL---------LNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGR 235
Cdd:PRK13547 153 RVQFARVLaqlwpphdaAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGA 232
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1806544180 236 IVETGTSKDVIGHALHPYTLGLMASIPSArGRGQPLAQIP 275
Cdd:PRK13547 233 IVAHGAPADVLTPAHIARCYGFAVRLVDA-GDGVPPVIVP 271
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
28-238 |
7.80e-17 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 78.08 E-value: 7.80e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 28 DGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdePGRIVEGAILFDGEDLrqadakrwralrGEEMAMIfqdpmmtln 107
Cdd:COG2401 47 RDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGAL--KGTPVAGCVDVPDNQF------------GREASLI--------- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 108 pvlrvdtqmvetvlahHDVSRSQAMARALEVLTMVGIPSPrERLRAYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTA 187
Cdd:COG2401 104 ----------------DAIGRKGDFKDAVELLNAVGLSDA-VLWLRRFKELSTGQKFRFRLALLLAERPKLLVIDEFCSH 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1806544180 188 LDVTiQAQIL-YEVRRLCRETGTALIWITHDLAVVAGLADR--IAVMYAGRIVE 238
Cdd:COG2401 167 LDRQ-TAKRVaRNLQKLARRAGITLVVATHHYDVIDDLQPDllIFVGYGGVPEE 219
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
3-218 |
1.34e-16 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 80.10 E-value: 1.34e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 3 DKAPVLDVRNLKthfFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEPGriveGAILFDGEDLRQA 82
Cdd:TIGR02868 330 LGKPTLELRDLS---AGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQ----GEVTLDGVPVSSL 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 83 DAKRWRALRG--EEMAMIFqdpmmtlnpvlrvDTQMVETV-LAHHDVSrSQAMARALEvltMVGIPSPrerLRAYPH--- 156
Cdd:TIGR02868 403 DQDEVRRRVSvcAQDAHLF-------------DTTVRENLrLARPDAT-DEELWAALE---RVGLADW---LRALPDgld 462
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 157 --------ELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVrrLCRETGTALIWITHDL 218
Cdd:TIGR02868 463 tvlgeggaRLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDL--LAALSGRTVVLITHHL 530
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
5-245 |
1.67e-16 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 77.72 E-value: 1.67e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 5 APVLDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKS-----ITGFSlmglldepgRIVEGAILFDGEDL 79
Cdd:PRK11300 3 QPLLSVSGLMMRF----GGLLAVNNVNLEVREQEIVSLIGPNGAGKTtvfncLTGFY---------KPTGGTILLRGQHI 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 80 RqadakrwrALRGEEMAMI-----FQD-----PMMTLNPVLRVDTQMVETVLAH-------HDVSRSQAMARALEVLTMV 142
Cdd:PRK11300 70 E--------GLPGHQIARMgvvrtFQHvrlfrEMTVIENLLVAQHQQLKTGLFSgllktpaFRRAESEALDRAATWLERV 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 143 GIPSPRERLRAyphELSGGMRQRVAIAIALLNSPRVIIADEPTTALDV--TIQAQILyeVRRLCRETGTALIWITHDLAV 220
Cdd:PRK11300 142 GLLEHANRQAG---NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPkeTKELDEL--IAELRNEHNVTVLLIEHDMKL 216
|
250 260
....*....|....*....|....*
gi 1806544180 221 VAGLADRIAVMYAGRIVETGTSKDV 245
Cdd:PRK11300 217 VMGISDRIYVVNQGTPLANGTPEEI 241
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
3-244 |
2.30e-16 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 79.44 E-value: 2.30e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 3 DKAPVLDVRNLKTHFFtragvvKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQA 82
Cdd:PRK09700 261 AHETVFEVRNVTSRDR------KKVRDISFSVCRGEILGFAGLVGSGRT----ELMNCLFGVDKRAGGEIRLNGKDISPR 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 83 DAkrWRALRgEEMAMIFQDpmmtlnpvlRVDTQMvetvLAHHDVSRSQAMARALEVLTM---VGIPSPRERLRAYPH--- 156
Cdd:PRK09700 331 SP--LDAVK-KGMAYITES---------RRDNGF----FPNFSIAQNMAISRSLKDGGYkgaMGLFHEVDEQRTAENqre 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 157 --------------ELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQIlYEVRRLCRETGTALIWITHDLAVVA 222
Cdd:PRK09700 395 llalkchsvnqnitELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEI-YKVMRQLADDGKVILMVSSELPEII 473
|
250 260
....*....|....*....|..
gi 1806544180 223 GLADRIAVMYAGRIVETGTSKD 244
Cdd:PRK09700 474 TVCDRIAVFCEGRLTQILTNRD 495
|
|
| anch_rpt_ABC |
TIGR03771 |
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ... |
32-268 |
2.41e-16 |
|
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 163483 [Multi-domain] Cd Length: 223 Bit Score: 76.81 E-value: 2.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 32 LYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRQADAKRWRALRGEEMAMIFqdPMMTLNPVLR 111
Cdd:TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLI----PPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDF--PISVAHTVMS 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 112 VDTQMVeTVLAHHDVSRSQAMARALEVLTMvgipsprERLRAYP-HELSGGMRQRVAIAIALLNSPRVIIADEPTTALDV 190
Cdd:TIGR03771 75 GRTGHI-GWLRRPCVADFAAVRDALRRVGL-------TELADRPvGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDM 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1806544180 191 TIQAQILYEVRRLCREtGTALIWITHDLAVVAGLADRIaVMYAGRIVETGTSKDVIGHALHPYTLGLMASIPSARGRG 268
Cdd:TIGR03771 147 PTQELLTELFIELAGA-GTAILMTTHDLAQAMATCDRV-VLLNGRVIADGTPQQLQDPAPWMTTFGVSDSSPLLRIVG 222
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
35-245 |
3.58e-16 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 76.80 E-value: 3.58e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 35 RQGEILGLVGESGSGKSiTGFSLM-GLLdePGrivEGAILFDGEDLRQADAKRWRALRgeemAMIFQD----PMMTLNPV 109
Cdd:COG4138 20 NAGELIHLIGPNGAGKS-TLLARMaGLL--PG---QGEILLNGRPLSDWSAAELARHR----AYLSQQqsppFAMPVFQY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 110 LRvdtqmvetvLAHHDVSRSQAMARALEVLTmvgipsprERLRAYP------HELSGGMRQRVAIAIALLN-------SP 176
Cdd:COG4138 90 LA---------LHQPAGASSEAVEQLLAQLA--------EALGLEDklsrplTQLSGGEWQRVRLAAVLLQvwptinpEG 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1806544180 177 RVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWItHDLAVVAGLADRIAVMYAGRIVETGTSKDV 245
Cdd:COG4138 153 QLLLLDEPMNSLDVAQQAALDRLLRELCQQGITVVMSS-HDLNHTLRHADRVWLLKQGKLVASGETAEV 220
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
27-250 |
3.63e-16 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 76.59 E-value: 3.63e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 27 VDGVDLYLRQGEILGLVGESGSGKSItgfslmgLLDEPGRI---VEGAILFDGEDLRQADAKRWralrGEEMAMIFQDPM 103
Cdd:PRK11231 18 LNDLSLSLPTGKITALIGPNGCGKST-------LLKCFARLltpQSGTVFLGDKPISMLSSRQL----ARRLALLPQHHL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 104 MTLNPVLRvdtQMVE----------TVLAHHDVSR-SQAMARaLEVLTMVgipsprERLRAyphELSGGMRQRVAIAIAL 172
Cdd:PRK11231 87 TPEGITVR---ELVAygrspwlslwGRLSAEDNARvNQAMEQ-TRINHLA------DRRLT---DLSGGQRQRAFLAMVL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1806544180 173 LNSPRVIIADEPTTALDVTIQAQILYEVRRLcRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDVIGHAL 250
Cdd:PRK11231 154 AQDTPVVLLDEPTTYLDINHQVELMRLMREL-NTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGL 230
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
4-241 |
6.63e-16 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 78.33 E-value: 6.63e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 4 KAPVLDVRNLktHFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQAD 83
Cdd:PRK11160 335 DQVSLTLNNV--SFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKS----TLLQLLTRAWDPQQGEILLNGQPIADYS 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 84 AKrwrALRgEEMAMIFQDPMMtLNPVLRVDTQmvetvLAHHDVSRSQamarALEVLTMVGIPS---PRERLRAYPHE--- 157
Cdd:PRK11160 409 EA---ALR-QAISVVSQRVHL-FSATLRDNLL-----LAAPNASDEA----LIEVLQQVGLEKlleDDKGLNAWLGEggr 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 158 -LSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRetGTALIWITHDLavvAGLA--DRIAVMYAG 234
Cdd:PRK11160 475 qLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ--NKTVLMITHRL---TGLEqfDRICVMDNG 549
|
....*..
gi 1806544180 235 RIVETGT 241
Cdd:PRK11160 550 QIIEQGT 556
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
25-246 |
7.00e-16 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 75.70 E-value: 7.00e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 25 KAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEPgrivEGAILFDGEDLRQADAKRwRALRG----EEMAMIFQ 100
Cdd:PRK10895 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD----AGNIIIDDEDISLLPLHA-RARRGigylPQEASIFR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 101 DpmmtlnpvLRVDTQMVETVLAHHDVSRSQAMARALEVLTMVGIPSPRERLrayPHELSGGMRQRVAIAIALLNSPRVII 180
Cdd:PRK10895 92 R--------LSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM---GQSLSGGERRRVEIARALAANPKFIL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1806544180 181 ADEPTTALDVTIQAQILYEVRRLcRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDVI 246
Cdd:PRK10895 161 LDEPFAGVDPISVIDIKRIIEHL-RDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
6-246 |
9.29e-16 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 75.51 E-value: 9.29e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 6 PVLDVRNLKthfFTRAGVvKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLL--DEP---GRIVEgaiLFdGEDLR 80
Cdd:COG1119 2 PLLELRNVT---VRRGGK-TILDDISWTVKPGEHWAILGPNGAGKS----TLLSLItgDLPptyGNDVR---LF-GERRG 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 81 QADakrWRALRGE------EMAMIFQDPMMTLNPVL--RVDTQMVetvlaHHDVSRSQaMARALEVLTMVGIPSPRERLr 152
Cdd:COG1119 70 GED---VWELRKRiglvspALQLRFPRDETVLDVVLsgFFDSIGL-----YREPTDEQ-RERARELLELLGLAHLADRP- 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 153 ayPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMY 232
Cdd:COG1119 140 --FGTLSQGEQRRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIPPGITHVLLLK 217
|
250
....*....|....
gi 1806544180 233 AGRIVETGTSKDVI 246
Cdd:COG1119 218 DGRVVAAGPKEEVL 231
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
25-243 |
1.27e-15 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 75.43 E-value: 1.27e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 25 KAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdEPGRIVEGAILFDGEDLRQA-----DAKRWRALRGeemaMIF 99
Cdd:PRK09984 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI-TGDKSAGSHIELLGRTVQREgrlarDIRKSRANTG----YIF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 100 Q-----DPMMTLNPVL---RVDTQMVETVLAHHDVSRSQamaRALEVLTMVGIPSprerlraYPHE----LSGGMRQRVA 167
Cdd:PRK09984 93 QqfnlvNRLSVLENVLigaLGSTPFWRTCFSWFTREQKQ---RALQALTRVGMVH-------FAHQrvstLSGGQQQRVA 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1806544180 168 IAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSK 243
Cdd:PRK09984 163 IARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ 238
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
30-253 |
5.21e-15 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 74.53 E-value: 5.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 30 VDLYLRQGEILGLVGESGSGKSitgfSLMGL---LDEP--GRIV-EGAILFDGE-DLRQADAKRwralrgeEMAMIFQD- 101
Cdd:PRK11144 17 VNLTLPAQGITAIFGRSGAGKT----SLINAisgLTRPqkGRIVlNGRVLFDAEkGICLPPEKR-------RIGYVFQDa 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 102 ---PMMTLNPVLRVDtqMVETVLAHHDvsrsqamaralEVLTMVGIPSpreRLRAYPHELSGGMRQRVAIAIALLNSPRV 178
Cdd:PRK11144 86 rlfPHYKVRGNLRYG--MAKSMVAQFD-----------KIVALLGIEP---LLDRYPGSLSGGEKQRVAIGRALLTAPEL 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1806544180 179 IIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDVIG-HALHPY 253
Cdd:PRK11144 150 LLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAsSAMRPW 225
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
8-252 |
1.09e-14 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 74.40 E-value: 1.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLkthFFTRAGVVKAV-DGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRQADakr 86
Cdd:COG4618 331 LSVENL---TVVPPGSKRPIlRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVW----PPTAGSVRLDGADLSQWD--- 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 87 wRALRGEEMAMIFQDpmmtlnpvlrvdtqmVE----TV------LAHHDVSRSQAMARALEV------L-----TMVGip 145
Cdd:COG4618 401 -REELGRHIGYLPQD---------------VElfdgTIaeniarFGDADPEKVVAAAKLAGVhemilrLpdgydTRIG-- 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 146 sprERLRAypheLSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLcRETGTALIWITHDLAVVAgLA 225
Cdd:COG4618 463 ---EGGAR----LSGGQRQRIGLARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRAL-KARGATVVVITHRPSLLA-AV 533
|
250 260
....*....|....*....|....*..
gi 1806544180 226 DRIAVMYAGRIVETGTSKDVIGHALHP 252
Cdd:COG4618 534 DKLLVLRDGRVQAFGPRDEVLARLARP 560
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
11-248 |
1.39e-14 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 72.04 E-value: 1.39e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 11 RNLKTHFF----TRAGVVKAVDGVDLYLRQGEILGLVGESGSGKS-----ITGfslmglLDEP--GRI-VEGAI--LFdg 76
Cdd:COG1134 22 RSLKELLLrrrrTRREEFWALKDVSFEVERGESVGIIGRNGAGKStllklIAG------ILEPtsGRVeVNGRVsaLL-- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 77 edlrqadakrwralrgeEMAMIFqDPMMTL--NpvlrvdtqmVETVLAHHDVSRSQAMARALEVLTMVGI------Pspr 148
Cdd:COG1134 94 -----------------ELGAGF-HPELTGreN---------IYLNGRLLGLSRKEIDEKFDEIVEFAELgdfidqP--- 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 149 erLRAYphelSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLcRETGTALIWITHDLAVVAGLADRI 228
Cdd:COG1134 144 --VKTY----SSGMRARLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIREL-RESGRTVIFVSHSMGAVRRLCDRA 216
|
250 260
....*....|....*....|
gi 1806544180 229 AVMYAGRIVETGTSKDVIGH 248
Cdd:COG1134 217 IWLEKGRLVMDGDPEEVIAA 236
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
4-245 |
1.58e-14 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 72.49 E-value: 1.58e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 4 KAPVLDVRNLKthfFTRaGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPGRiveGAILFDGEDLRQAD 83
Cdd:PRK11831 4 VANLVDMRGVS---FTR-GNRCIFDNISLTVPRGKITAIMGPSGIGKT-TLLRLIGGQIAPDH---GEILFDGENIPAMS 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 84 AKRWRALRgEEMAMIFQD-PMMTLNPV-------LRVDTQMVETVLahhdvsRSQAMARalevLTMVGIpspRERLRAYP 155
Cdd:PRK11831 76 RSRLYTVR-KRMSMLFQSgALFTDMNVfdnvaypLREHTQLPAPLL------HSTVMMK----LEAVGL---RGAAKLMP 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 156 HELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGR 235
Cdd:PRK11831 142 SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKK 221
|
250
....*....|
gi 1806544180 236 IVETGTSKDV 245
Cdd:PRK11831 222 IVAHGSAQAL 231
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
27-248 |
1.73e-14 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 73.92 E-value: 1.73e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 27 VDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEpgriVEGAILFDGEDLRQADakrwRALRGEEMAMIFQDpmmtl 106
Cdd:TIGR01842 334 LRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPP----TSGSVRLDGADLKQWD----RETFGKHIGYLPQD----- 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 107 npvlrvdTQMVETVLAHhDVSRSQAMARALEVLTMVGIPSPRERLRAYPH-----------ELSGGMRQRVAIAIALLNS 175
Cdd:TIGR01842 401 -------VELFPGTVAE-NIARFGENADPEKIIEAAKLAGVHELILRLPDgydtvigpggaTLSGGQRQRIALARALYGD 472
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1806544180 176 PRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIwITHDLAVVaGLADRIAVMYAGRIVETGTSKDVIGH 248
Cdd:TIGR01842 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVV-ITHRPSLL-GCVDKILVLQDGRIARFGERDEVLAK 543
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-242 |
2.76e-14 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 71.21 E-value: 2.76e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 1 MTDKAPVLDVRNLKthfftrAGV--VKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGlldEPG-RIVEGAILFDGE 77
Cdd:CHL00131 1 MNKNKPILEIKNLH------ASVneNEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG---HPAyKILEGDILFKGE 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 78 DLRQADAKRwRALRGEEMAmiFQDPmMTLNPVLRVDTQMvetvLAHHDVSRSQAMARA-----LEV----LTMVGIpSPR 148
Cdd:CHL00131 72 SILDLEPEE-RAHLGIFLA--FQYP-IEIPGVSNADFLR----LAYNSKRKFQGLPELdplefLEIinekLKLVGM-DPS 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 149 ERLRAYPHELSGGMRQRVAI-AIALLNsPRVIIADEPTTALDVTIQAQILYEVRRLcRETGTALIWITH-----DLAVva 222
Cdd:CHL00131 143 FLSRNVNEGFSGGEKKRNEIlQMALLD-SELAILDETDSGLDIDALKIIAEGINKL-MTSENSIILITHyqrllDYIK-- 218
|
250 260
....*....|....*....|
gi 1806544180 223 glADRIAVMYAGRIVETGTS 242
Cdd:CHL00131 219 --PDYVHVMQNGKIIKTGDA 236
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
26-304 |
2.87e-14 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 73.89 E-value: 2.87e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 26 AVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEpgriVEGAILFDGEDLRQA-DAKRwralrgEEMAMIFQdpmm 104
Cdd:TIGR01257 945 AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP----TSGTVLVGGKDIETNlDAVR------QSLGMCPQ---- 1010
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 105 tlNPVLRVDTQMVETVLAHHDVS-RSQAMARaLEVLTMVGIPSPRERLRAYPHELSGGMRQRVAIAIALLNSPRVIIADE 183
Cdd:TIGR01257 1011 --HNILFHHLTVAEHILFYAQLKgRSWEEAQ-LEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDE 1087
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 184 PTTALDVTIQAQI---LYEVRrlcreTGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTS---KDVIGHALHPYTLGL 257
Cdd:TIGR01257 1088 PTSGVDPYSRRSIwdlLLKYR-----SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPlflKNCFGTGFYLTLVRK 1162
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1806544180 258 MASIPSARGRGQPLAQIPGMtpsllnlpqgcAFRQRCPRATDACLRE 304
Cdd:TIGR01257 1163 MKNIQSQRGGCEGTCSCTSK-----------GFSTRCPARVDEITPE 1198
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
27-236 |
3.49e-14 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 72.73 E-value: 3.49e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 27 VDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQADAKRwrALRgEEMAMIFQDPM--- 103
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRT----ELMKVLYGALPRTSGYVTLDGHEVVTRSPQD--GLA-NGIVYISEDRKrdg 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 104 MTLNpvLRVDTQMVETVLAH--HDVSRSQAMARALEV-----LTMVGIPSPRERLRayphELSGGMRQRVAIAIALLNSP 176
Cdd:PRK10762 341 LVLG--MSVKENMSLTALRYfsRAGGSLKHADEQQAVsdfirLFNIKTPSMEQAIG----LLSGGNQQKVAIARGLMTRP 414
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 177 RVIIADEPTTALDVTIQAQIlYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRI 236
Cdd:PRK10762 415 KVLILDEPTRGVDVGAKKEI-YQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
42-241 |
3.92e-14 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 72.83 E-value: 3.92e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 42 LVGESGSGKSITGFSLMGLLDepgrIVEGAILFDGEDLRQADAkrwRALRgEEMAMIFQDPMMtlnpvlrvdtqMVETVL 121
Cdd:PRK10790 372 LVGHTGSGKSTLASLLMGYYP----LTEGEIRLDGRPLSSLSH---SVLR-QGVAMVQQDPVV-----------LADTFL 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 122 AHHDVSRSQAMARALEVLTMVGIPsprERLRAYP-----------HELSGGMRQRVAIAIALLNSPRVIIADEPTTALDV 190
Cdd:PRK10790 433 ANVTLGRDISEEQVWQALETVQLA---ELARSLPdglytplgeqgNNLSVGQKQLLALARVLVQTPQILILDEATANIDS 509
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1806544180 191 -TIQA--QILYEVRRlcretGTALIWITHDLAVVAGlADRIAVMYAGRIVETGT 241
Cdd:PRK10790 510 gTEQAiqQALAAVRE-----HTTLVVIAHRLSTIVE-ADTILVLHRGQAVEQGT 557
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
27-216 |
8.31e-14 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 71.76 E-value: 8.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 27 VDGVDLYLRQGEILGLVGESGSGKS-----ITGFSLMGlldepgrivEGAILFDgedlrqadakrwralRGEEMAMIFQD 101
Cdd:COG4178 379 LEDLSLSLKPGERLLITGPSGSGKStllraIAGLWPYG---------SGRIARP---------------AGARVLFLPQR 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 102 PMMtlnPV--LRvdtqmveTVLAHHDVSRSQAMARALEVLTMVGIPSPRERL---RAYPHELSGGMRQRVAIAIALLNSP 176
Cdd:COG4178 435 PYL---PLgtLR-------EALLYPATAEAFSDAELREALEAVGLGHLAERLdeeADWDQVLSLGEQQRLAFARLLLHKP 504
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1806544180 177 RVIIADEPTTALDVTIQAQILYEVRRLCRetGTALIWITH 216
Cdd:COG4178 505 DWLFLDEATSALDEENEAALYQLLREELP--GTTVISVGH 542
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
34-245 |
1.86e-13 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 68.81 E-value: 1.86e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 34 LRQGEILGLVGESGSGKSITGFSLMGLLdePGrivEGAILFDGEDLRQADAK---RWRALrgeemaMIFQDPMMTLNPVL 110
Cdd:PRK03695 19 VRAGEILHLVGPNGAGKSTLLARMAGLL--PG---SGSIQFAGQPLEAWSAAelaRHRAY------LSQQQTPPFAMPVF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 111 rvdtQMVEtvLAHHDVSRSQAMARALEVLT-MVGIPSPRERlraYPHELSGGMRQRVAIAIALL-----NSP--RVIIAD 182
Cdd:PRK03695 88 ----QYLT--LHQPDKTRTEAVASALNEVAeALGLDDKLGR---SVNQLSGGEWQRVRLAAVVLqvwpdINPagQLLLLD 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1806544180 183 EPTTALDVTiQAQILYE-VRRLCREtGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDV 245
Cdd:PRK03695 159 EPMNSLDVA-QQAALDRlLSELCQQ-GIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEV 220
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
37-243 |
5.26e-13 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 67.99 E-value: 5.26e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 37 GEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRQADAKRWRAL--RGEEMAMIFqdpmmtlnPVLRVDT 114
Cdd:PRK15056 33 GSIAALVGVNGSGKSTLFKALMGFV----RLASGKISILGQPTRQALQKNLVAYvpQSEEVDWSF--------PVLVEDV 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 115 QMVETVLAHHDVSRSQAMARAL--EVLTMVGIPSPRERLRAyphELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTI 192
Cdd:PRK15056 101 VMMGRYGHMGWLRRAKKRDRQIvtAALARVDMVEFRHRQIG---ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKT 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1806544180 193 QAQILYEVRRLcRETGTALIWITHDLAVVAGLADrIAVMYAGRIVETGTSK 243
Cdd:PRK15056 178 EARIISLLREL-RDEGKTMLVSTHNLGSVTEFCD-YTVMVKGTVLASGPTE 226
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
2-240 |
5.35e-13 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 67.17 E-value: 5.35e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 2 TDKAPVLDVRNLKTHFF-TRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEP--GRI-VEG---AIL- 73
Cdd:cd03220 12 TYKGGSSSLKKLGILGRkGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKS-TLLRLLAGIYPPdsGTVtVRGrvsSLLg 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 74 ----FDGEdlrqadakrwraLRGEEMAMIfqdpMMTLnpvlrvdtqmvetvlahHDVSRSQAMARALEVLTMVGIP---- 145
Cdd:cd03220 91 lgggFNPE------------LTGRENIYL----NGRL-----------------LGLSRKEIDEKIDEIIEFSELGdfid 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 146 SPrerLRAYphelSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLcRETGTALIWITHDLAVVAGLA 225
Cdd:cd03220 138 LP---VKTY----SSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLREL-LKQGKTVILVSHDPSSIKRLC 209
|
250
....*....|....*
gi 1806544180 226 DRIAVMYAGRIVETG 240
Cdd:cd03220 210 DRALVLEKGKIRFDG 224
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
21-246 |
6.98e-13 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 68.32 E-value: 6.98e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 21 AGVVKA------VDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdEPGRiveGAILFDGEDL-RQADAKRWR----- 88
Cdd:PRK13536 45 AGVSKSygdkavVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMT-SPDA---GKITVLGVPVpARARLARARigvvp 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 89 ALRGEEMAMIFQDPMMTLNPVLRVDTQMVETVlahhdvsrsqamaralevltmvgIPSPRERLR------AYPHELSGGM 162
Cdd:PRK13536 121 QFDNLDLEFTVRENLLVFGRYFGMSTREIEAV-----------------------IPSLLEFARleskadARVSDLSGGM 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 163 RQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCREtGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTS 242
Cdd:PRK13536 178 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRP 256
|
....
gi 1806544180 243 KDVI 246
Cdd:PRK13536 257 HALI 260
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
28-217 |
9.72e-13 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 68.55 E-value: 9.72e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 28 DGVDLYLRQGEILGLVGESGSGKSitgfSLMGLL---DEP--GRIV--EGA---------ILFDGEDLR----QADAKRW 87
Cdd:COG0488 15 DDVSLSINPGDRIGLVGRNGAGKS----TLLKILageLEPdsGEVSipKGLrigylpqepPLDDDLTVLdtvlDGDAELR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 88 RALRgeEMAMIFQDPMMTLNPVLRVDTqmVETVLAHHDVSrsQAMARALEVLTMVGIPspRERLRAYPHELSGGMRQRVA 167
Cdd:COG0488 91 ALEA--ELEELEAKLAEPDEDLERLAE--LQEEFEALGGW--EAEARAEEILSGLGFP--EEDLDRPVSELSGGWRRRVA 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1806544180 168 IAIALLNSPRVIIADEPTTALDvtIQAqILYEVRRLCRETGTALIwITHD 217
Cdd:COG0488 163 LARALLSEPDLLLLDEPTNHLD--LES-IEWLEEFLKNYPGTVLV-VSHD 208
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
26-241 |
1.81e-12 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 67.82 E-value: 1.81e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 26 AVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQADAKRWRAlrgeEMAMIFQdpmmt 105
Cdd:PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKS----TLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS----RLAVVSQ----- 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 106 lNPVLRVDTQMVETVLAHHDVSRSQ--AMARALEV-----------LTMVGipsprERLRAypheLSGGMRQRVAIAIAL 172
Cdd:PRK10789 397 -TPFLFSDTVANNIALGRPDATQQEieHVARLASVhddilrlpqgyDTEVG-----ERGVM----LSGGQKQRISIARAL 466
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1806544180 173 LNSPRVIIADEPTTALDVTIQAQILYEVRRLCRetGTALIWITHDLAVVAGlADRIAVMYAGRIVETGT 241
Cdd:PRK10789 467 LLNAEILILDDALSAVDGRTEHQILHNLRQWGE--GRTVIISAHRLSALTE-ASEILVMQHGHIAQRGN 532
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
24-237 |
3.08e-12 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 66.86 E-value: 3.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 24 VKAVDG------VDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQADAKRwrALRGEemam 97
Cdd:PRK11288 260 LDGLKGpglrepISFSVRAGEIVGLFGLVGAGRS----ELMKLLYGATRRTAGQVYLDGKPIDIRSPRD--AIRAG---- 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 98 ifqdpmMTLNPVLR-----VDTQMVETVLA-----HH-------DVSRSQAMA----RALEVLTmvgiPSPRERLRAyph 156
Cdd:PRK11288 330 ------IMLCPEDRkaegiIPVHSVADNINisarrHHlragcliNNRWEAENAdrfiRSLNIKT----PSREQLIMN--- 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 157 eLSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQIlYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRI 236
Cdd:PRK11288 397 -LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEI-YNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRI 474
|
.
gi 1806544180 237 V 237
Cdd:PRK11288 475 A 475
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
158-271 |
5.77e-12 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 65.01 E-value: 5.77e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 158 LSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIV 237
Cdd:PRK10253 144 LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIV 223
|
90 100 110
....*....|....*....|....*....|....
gi 1806544180 238 ETGTSKDVIGHALHPYTLGLMASIPSARGRGQPL 271
Cdd:PRK10253 224 AQGAPKEIVTAELIERIYGLRCMIIDDPVAGTPL 257
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
16-237 |
7.05e-12 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 63.44 E-value: 7.05e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 16 HFFTRAGVVKA--VDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEPGRiVEGAILFDGEDLRQAdAKRWRAlrge 93
Cdd:cd03233 10 SFTTGKGRSKIpiLKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVS-VEGDIHYNGIPYKEF-AEKYPG---- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 94 EMAMIFQDPMMtlNPVLRVDtQMVETVLA--HHDVSRsqamaralevltmvGIpsprerlrayphelSGGMRQRVAIAIA 171
Cdd:cd03233 84 EIIYVSEEDVH--FPTLTVR-ETLDFALRckGNEFVR--------------GI--------------SGGERKRVSIAEA 132
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1806544180 172 LLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVA-GLADRIAVMYAGRIV 237
Cdd:cd03233 133 LVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIyDLFDKVLVLYEGRQI 199
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
148-216 |
7.67e-12 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 62.56 E-value: 7.67e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1806544180 148 RERLrAYP--HELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILyevrRLCRETGTALIWITH 216
Cdd:cd03223 81 REQL-IYPwdDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLY----QLLKELGITVISVGH 146
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
26-244 |
1.06e-11 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 65.38 E-value: 1.06e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 26 AVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRQADAKRWRALrgeeMAMIFQDPMM- 104
Cdd:PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY----QPQSGEILLDGKPVTAEQPEDYRKL----FSAVFTDFHLf 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 105 --TLNPV-LRVDTQMVETVLAHHDvsrsqaMARALEVltmvgipsprERLRAYPHELSGGMRQRVAIAIALLNSPRVIIA 181
Cdd:PRK10522 410 dqLLGPEgKPANPALVEKWLERLK------MAHKLEL----------EDGRISNLKLSKGQKKRLALLLALAEERDILLL 473
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1806544180 182 DEPTTALDVTIQaQILY-EVRRLCRETGTALIWITHDLAVVAGlADRIAVMYAGRIVE-TGTSKD 244
Cdd:PRK10522 474 DEWAADQDPHFR-REFYqVLLPLLQEMGKTIFAISHDDHYFIH-ADRLLEMRNGQLSElTGEERD 536
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
7-241 |
3.26e-11 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 62.49 E-value: 3.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 7 VLDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKS--ITGFSLMGLLDEPGRiVEGAILFDGEDLRQADA 84
Cdd:PRK14243 10 VLRTENLNVYY----GSFLAVKNVWLDIPKNQITAFIGPSGCGKStiLRCFNRLNDLIPGFR-VEGKVTFHGKNLYAPDV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 85 KRWRALRgeEMAMIFQDPmmtlNP--------------VLRVDTQMVETVlahhDVSRSQAmarAL--EVltmvgipspR 148
Cdd:PRK14243 85 DPVEVRR--RIGMVFQKP----NPfpksiydniaygarINGYKGDMDELV----ERSLRQA---ALwdEV---------K 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 149 ERLRAYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDvTIQAQILYEVRRLCRETGTALIwITHDLAVVAGLADRI 228
Cdd:PRK14243 143 DKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD-PISTLRIEELMHELKEQYTIII-VTHNMQQAARVSDMT 220
|
250
....*....|...
gi 1806544180 229 AvMYAGRIVETGT 241
Cdd:PRK14243 221 A-FFNVELTEGGG 232
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
26-231 |
4.06e-11 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 61.10 E-value: 4.06e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 26 AVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLdepgrivegailfdgEDLRQADAKRWRALRGEEMAMIFQDpmmt 105
Cdd:NF040873 7 VLHGVDLTIPAGSLTAVVGPNGSGKS----TLLKVL---------------AGVLRPTSGTVRRAGGARVAYVPQR---- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 106 lnpvLRVDTQMVETV--------------LAHHDVSRSQAMARALEvltMVGIpsprERLRAYP-HELSGGMRQRVAIAI 170
Cdd:NF040873 64 ----SEVPDSLPLTVrdlvamgrwarrglWRRLTRDDRAAVDDALE---RVGL----ADLAGRQlGELSGGQRQRALLAQ 132
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1806544180 171 ALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCREtGTALIWITHDLAVVAgLADRIAVM 231
Cdd:NF040873 133 GLAQEADLLLLDEPTTGLDAESRERIIALLAEEHAR-GATVVVVTHDLELVR-RADPCVLL 191
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
6-252 |
4.29e-11 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 63.53 E-value: 4.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 6 PVLDVRNLKTHFftrAGVVkAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMglldepgRIVEGAILFDGEDLRQADAK 85
Cdd:PRK15439 10 PLLCARSISKQY---SGVE-VLKGIDFTLHAGEVHALLGGNGAGKS----TLM-------KIIAGIVPPDSGTLEIGGNP 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 86 RWRALRGEEMAM----IFQDPMMTLN-----------PVLRVDTQMVETVLAHHDVSRSQAM-ARALEVLTmvgipspre 149
Cdd:PRK15439 75 CARLTPAKAHQLgiylVPQEPLLFPNlsvkenilfglPKRQASMQKMKQLLAALGCQLDLDSsAGSLEVAD--------- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 150 rlrayphelsggmRQRVAIAIALLNSPRVIIADEPTTALdVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIA 229
Cdd:PRK15439 146 -------------RQIVEILRGLMRDSRILILDEPTASL-TPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRIS 211
|
250 260
....*....|....*....|....*..
gi 1806544180 230 VMYAGRIVETGT----SKDVIGHALHP 252
Cdd:PRK15439 212 VMRDGTIALSGKtadlSTDDIIQAITP 238
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
28-228 |
5.94e-11 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 63.43 E-value: 5.94e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 28 DGVDLYLRQGEILGLVGESGSGKSitgfSLMG------LLDE-----------------PGRIVEGAIlFD--GEDLR-Q 81
Cdd:PRK11147 20 DNAELHIEDNERVCLVGRNGAGKS----TLMKilngevLLDDgriiyeqdlivarlqqdPPRNVEGTV-YDfvAEGIEeQ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 82 ADA-KRWRALrgeeMAMIFQDPM-MTLNPVLRVdtqmvETVLAHHDVSrsQAMARALEVLTMVGIpSPRERLRayphELS 159
Cdd:PRK11147 95 AEYlKRYHDI----SHLVETDPSeKNLNELAKL-----QEQLDHHNLW--QLENRINEVLAQLGL-DPDAALS----SLS 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1806544180 160 GGMRQRVAIAIALLNSPRVIIADEPTTALDV-TIQ--AQILYEVRrlcretgTALIWITHDLAVVAGLADRI 228
Cdd:PRK11147 159 GGWLRKAALGRALVSNPDVLLLDEPTNHLDIeTIEwlEGFLKTFQ-------GSIIFISHDRSFIRNMATRI 223
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
29-221 |
7.95e-11 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 60.45 E-value: 7.95e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 29 GVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRQAdakrwRALRGEEMAMIFQDPmmTLNP 108
Cdd:TIGR01189 18 GLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL----RPDSGEVRWNGTPLAEQ-----RDEPHENILYLGHLP--GLKP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 109 VLRVdtqmVETVLAHHDVSRSQAMArALEVLTMVGIpSPRERLRAypHELSGGMRQRVAIAIALLNSPRVIIADEPTTAL 188
Cdd:TIGR01189 87 ELSA----LENLHFWAAIHGGAQRT-IEDALAAVGL-TGFEDLPA--AQLSAGQQRRLALARLWLSRRPLWILDEPTTAL 158
|
170 180 190
....*....|....*....|....*....|...
gi 1806544180 189 DVTIQAQILYEVRRLCRETGTALIWITHDLAVV 221
Cdd:TIGR01189 159 DKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV 191
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
24-234 |
9.91e-11 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 62.33 E-value: 9.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 24 VKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEdlrQADAKRWRALRGEEMAMIFQDpm 103
Cdd:PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKS----TMMKVLTGIYTRDAGSILYLGK---EVTFNGPKSSQEAGIGIIHQE-- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 104 MTLNPVLRVdtqmVETV-LAHHDVSR------SQAMARALEVLTMVGIP-SPRERLraypHELSGGMRQRVAIAIALLNS 175
Cdd:PRK10762 88 LNLIPQLTI----AENIfLGREFVNRfgridwKKMYAEADKLLARLNLRfSSDKLV----GELSIGEQQMVEIAKVLSFE 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1806544180 176 PRVIIADEPTTALDVTiQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAG 234
Cdd:PRK10762 160 SKVIIMDEPTDALTDT-ETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDG 217
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
157-255 |
1.06e-10 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 62.49 E-value: 1.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 157 ELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIavmyagrI 236
Cdd:COG1245 455 DLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRFAENRGKTAMVVDHDIYLIDYISDRL-------M 527
|
90
....*....|....*....
gi 1806544180 237 VETGTSkDVIGHALHPYTL 255
Cdd:COG1245 528 VFEGEP-GVHGHASGPMDM 545
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
29-228 |
1.53e-10 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 59.81 E-value: 1.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 29 GVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQAdakrwRALRGEEMAMIFQDPMM--TL 106
Cdd:cd03231 18 GLSFTLAAGEALQVTGPNGSGKT----TLLRILAGLSPPLAGRVLLNGGPLDFQ-----RDSIARGLLYLGHAPGIktTL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 107 NPV--LRvdtqmvetvLAHHDVSRSQAmaraLEVLTMVGipsprerLRAYPH----ELSGGMRQRVAIAIALLNSPRVII 180
Cdd:cd03231 89 SVLenLR---------FWHADHSDEQV----EEALARVG-------LNGFEDrpvaQLSAGQQRRVALARLLLSGRPLWI 148
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1806544180 181 ADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRI 228
Cdd:cd03231 149 LDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGAREL 196
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
16-246 |
1.56e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 62.30 E-value: 1.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 16 HFFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSitgfslmGLLDEPGRIVE---GAILFDGEDLRQ---ADAKRwra 89
Cdd:PLN03232 1241 HLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKS-------SMLNALFRIVElekGRIMIDDCDVAKfglTDLRR--- 1310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 90 lrgeEMAMIFQDPMMtLNPVLRVDtqmVETVLAHHDVSRSQAMARAlevltmvgipSPRERLRAYPHEL----------- 158
Cdd:PLN03232 1311 ----VLSIIPQSPVL-FSGTVRFN---IDPFSEHNDADLWEALERA----------HIKDVIDRNPFGLdaevseggenf 1372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 159 SGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETgTALIwITHDLAVVAGlADRIAVMYAGRIVE 238
Cdd:PLN03232 1373 SVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSC-TMLV-IAHRLNTIID-CDKILVLSSGQVLE 1449
|
....*...
gi 1806544180 239 TGTSKDVI 246
Cdd:PLN03232 1450 YDSPQELL 1457
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
22-228 |
2.65e-10 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 59.74 E-value: 2.65e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 22 GVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdEPGrivEGAIlfdgedlrqadaKRWRALR-GEEMAMIFQ 100
Cdd:PRK09544 15 GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV-APD---EGVI------------KRNGKLRiGYVPQKLYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 101 DPMMTLNpvlrvdtqmVETVLAHHDVSRSQAMARALEVLTMvgipsprERLRAYP-HELSGGMRQRVAIAIALLNSPRVI 179
Cdd:PRK09544 79 DTTLPLT---------VNRFLRLRPGTKKEDILPALKRVQA-------GHLIDAPmQKLSGGETQRVLLARALLNRPQLL 142
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1806544180 180 IADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRI 228
Cdd:PRK09544 143 VLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEV 191
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
35-232 |
2.76e-10 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 59.69 E-value: 2.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 35 RQGEILGLVGESGSGKSiTGFSLMGlldepGRIVEGAILFDGEDlrqadakRW----RALRGEEMAMIFQDPMM-TLNPV 109
Cdd:cd03236 24 REGQVLGLVGPNGIGKS-TALKILA-----GKLKPNLGKFDDPP-------DWdeilDEFRGSELQNYFTKLLEgDVKVI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 110 LRVdtQMVETVLAHHDVSRSQAMARALE------VLTMVGIPSPRERlraYPHELSGGMRQRVAIAIALLNSPRVIIADE 183
Cdd:cd03236 91 VKP--QYVDLIPKAVKGKVGELLKKKDErgkldeLVDQLELRHVLDR---NIDQLSGGELQRVAIAAALARDADFYFFDE 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1806544180 184 PTTALDVT--IQAQILyeVRRLCREtGTALIWITHDLAVVAGLADRIAVMY 232
Cdd:cd03236 166 PSSYLDIKqrLNAARL--IRELAED-DNYVLVVEHDLAVLDYLSDYIHCLY 213
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
153-231 |
3.09e-10 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 57.46 E-value: 3.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 153 AYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDV-TIQAqiLYEVrrLCRETGTALIwITHDLAVVAGLADRIAVM 231
Cdd:cd03221 66 GYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLeSIEA--LEEA--LKEYPGTVIL-VSHDRYFLDQVATKIIEL 140
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
33-255 |
3.49e-10 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 60.98 E-value: 3.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 33 YLRQGEILGLVGESGSGKSITGFSLMGLLdEPgriVEGAILFDgedLR-----QadakrwralrgeemaMIFQDPMMTLN 107
Cdd:PRK13409 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVL-KP---DEGEVDPE---LKisykpQ---------------YIKPDYDGTVE 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 108 PVLRVDTQMVETVLAHHDVSRSQAMARALEvltmvgipsprERLRayphELSGGMRQRVAIAIALLNSPRVIIADEPTTA 187
Cdd:PRK13409 419 DLLRSITDDLGSSYYKSEIIKPLQLERLLD-----------KNVK----DLSGGELQRVAIAACLSRDADLYLLDEPSAH 483
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1806544180 188 LDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIavmyagrIVETGTSkDVIGHALHPYTL 255
Cdd:PRK13409 484 LDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRL-------MVFEGEP-GKHGHASGPMDM 543
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
2-241 |
6.21e-10 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 60.14 E-value: 6.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 2 TDKAPVLDVRNLKTHF--FTragvvkAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDepgrIVEG-AILF---- 74
Cdd:NF033858 261 DDDEPAIEARGLTMRFgdFT------AVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLP----ASEGeAWLFgqpv 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 75 DGEDLrqadAKRWR--------ALRGEemamifqdpmmtLnpvlrvdtqmveTV---LAHH----DVSRSQAMARALEVL 139
Cdd:NF033858 331 DAGDI----ATRRRvgymsqafSLYGE------------L------------TVrqnLELHarlfHLPAAEIAARVAEML 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 140 TMVGIpspRERLRAYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVtiQA-----QILYEvrrLCRETG-TalIW 213
Cdd:NF033858 383 ERFDL---ADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDP--VArdmfwRLLIE---LSREDGvT--IF 452
|
250 260
....*....|....*....|....*....
gi 1806544180 214 I-THDLAvVAGLADRIAVMYAGRIVETGT 241
Cdd:NF033858 453 IsTHFMN-EAERCDRISLMHAGRVLASDT 480
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
24-246 |
6.62e-10 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 59.74 E-value: 6.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 24 VKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEPgrivEGAILFDGEDLRQADAKRwrALRgEEMAMIFQDpm 103
Cdd:PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQGKEIDFKSSKE--ALE-NGISMVHQE-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 104 mtLNPVLRVdTQMVETVLAHHD-----VSRSQAMARALEVLTMVGIP-SPRERLRayphELSGGMRQRVAIAIALLNSPR 177
Cdd:PRK10982 82 --LNLVLQR-SVMDNMWLGRYPtkgmfVDQDKMYRDTKAIFDELDIDiDPRAKVA----TLSVSQMQMIEIAKAFSYNAK 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1806544180 178 VIIADEPTTALDVTiQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVET----GTSKDVI 246
Cdd:PRK10982 155 IVIMDEPTSSLTEK-EVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATqplaGLTMDKI 226
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
2-246 |
7.25e-10 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 59.74 E-value: 7.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 2 TDKAPVLDVRNLKthfftrAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEpgriVEGAILFDGEDLRQ 81
Cdd:PRK10982 245 KPGEVILEVRNLT------SLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREK----SAGTITLHGKKINN 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 82 ADA----KRWRALRGEE--MAMIFQDPMMTLNPVL-RVDTQMVET-VLAHHDV-SRSQAMARALEVLTmvgiPSPRERLR 152
Cdd:PRK10982 315 HNAneaiNHGFALVTEErrSTGIYAYLDIGFNSLIsNIRNYKNKVgLLDNSRMkSDTQWVIDSMRVKT----PGHRTQIG 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 153 AypheLSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCREtGTALIWITHDLAVVAGLADRIAVMY 232
Cdd:PRK10982 391 S----LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILVMS 465
|
250
....*....|....*...
gi 1806544180 233 AGR---IVETG-TSKDVI 246
Cdd:PRK10982 466 NGLvagIVDTKtTTQNEI 483
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
29-216 |
1.39e-09 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 57.19 E-value: 1.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 29 GVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRQADAkrwralrGEEMAMI-FQDPMmtlN 107
Cdd:PRK13539 20 GLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL----PPAAGTIKLDGGDIDDPDV-------AEACHYLgHRNAM---K 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 108 PVLRVdtqmVETVLAHHDVsRSQAMARALEVLTMVGIpSPRERLRAypHELSGGMRQRVAIAiALLNSPRVI-IADEPTT 186
Cdd:PRK13539 86 PALTV----AENLEFWAAF-LGGEELDIAAALEAVGL-APLAHLPF--GYLSAGQKRRVALA-RLLVSNRPIwILDEPTA 156
|
170 180 190
....*....|....*....|....*....|
gi 1806544180 187 ALDVTIQAQILYEVRRLCRETGTALIwITH 216
Cdd:PRK13539 157 ALDAAAVALFAELIRAHLAQGGIVIA-ATH 185
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
29-246 |
1.49e-09 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 59.37 E-value: 1.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 29 GVDLYLRQGEILGLVGESGSGKSitgfslmGLLDEPGRIVE---GAILFDGEDLRQADAKRWRALRGeemaMIFQDPMM- 104
Cdd:PLN03130 1257 GLSFEISPSEKVGIVGRTGAGKS-------SMLNALFRIVElerGRILIDGCDISKFGLMDLRKVLG----IIPQAPVLf 1325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 105 ------TLNPV-LRVDTQMVETVLAHH--DVSRSQAMARALEVlTMVGipsprerlraypHELSGGMRQRVAIAIALLNS 175
Cdd:PLN03130 1326 sgtvrfNLDPFnEHNDADLWESLERAHlkDVIRRNSLGLDAEV-SEAG------------ENFSVGQRQLLSLARALLRR 1392
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1806544180 176 PRVIIADEPTTALDVTIQAQILYEVR---RLCretgTALIwITHDLAVVAGlADRIAVMYAGRIVETGTSKDVI 246
Cdd:PLN03130 1393 SKILVLDEATAAVDVRTDALIQKTIReefKSC----TMLI-IAHRLNTIID-CDRILVLDAGRVVEFDTPENLL 1460
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
34-230 |
2.23e-09 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 57.03 E-value: 2.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 34 LRQGEILGLVGESGSGKSITGFSLMGLLdEPGrivEGAILFDGEDLrqadakrwrALRGEEmamIFQDPMMTLNPVLRVD 113
Cdd:cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVL-KPD---EGDIEIELDTV---------SYKPQY---IKADYEGTVRDLLSSI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 114 TQMVETvlahHDVSRSqamaralEVLTMVGIPSPRERLRAyphELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQ 193
Cdd:cd03237 86 TKDFYT----HPYFKT-------EIAKPLQIEQILDREVP---ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQR 151
|
170 180 190
....*....|....*....|....*....|....*...
gi 1806544180 194 AQILYEVRRLCRET-GTALIwITHDLAVVAGLADRIAV 230
Cdd:cd03237 152 LMASKVIRRFAENNeKTAFV-VEHDIIMIDYLADRLIV 188
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
157-232 |
2.31e-09 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 56.04 E-value: 2.31e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1806544180 157 ELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMY 232
Cdd:cd03222 71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFE 146
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
8-221 |
2.40e-09 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 58.50 E-value: 2.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 8 LDVRNLKTHFFTRAGVVKAVDgVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEPgriVEGAILF-DGEDLRQADAKR 86
Cdd:PTZ00265 383 IQFKNVRFHYDTRKDVEIYKD-LNFTLTEGKTYAFVGESGCGKS-TILKLIERLYDP---TEGDIIInDSHNLKDINLKW 457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 87 WRAlrgeEMAMIFQDPMM--------------TLNPVLRVDTQMVETVLAHHDVSRSQAMARAL---------------E 137
Cdd:PTZ00265 458 WRS----KIGVVSQDPLLfsnsiknnikyslySLKDLEALSNYYNEDGNDSQENKNKRNSCRAKcagdlndmsnttdsnE 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 138 VLTM-------------------------VGIPSPRERL-RAYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVT 191
Cdd:PTZ00265 534 LIEMrknyqtikdsevvdvskkvlihdfvSALPDKYETLvGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNK 613
|
250 260 270
....*....|....*....|....*....|
gi 1806544180 192 IQAQILYEVRRLCRETGTALIWITHDLAVV 221
Cdd:PTZ00265 614 SEYLVQKTINNLKGNENRITIIIAHRLSTI 643
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
45-230 |
3.75e-09 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 58.12 E-value: 3.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 45 ESGSGKSITGFSlmglldepgriVEGAILFDGEDLRQADAKRWRALrgeeMAMIFQDPMMtLNPVLRVDTQMVETVLAHH 124
Cdd:PTZ00265 1263 EGGSGEDSTVFK-----------NSGKILLDGVDICDYNLKDLRNL----FSIVSQEPML-FNMSIYENIKFGKEDATRE 1326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 125 DVSRSQAMARALEVLTmvGIPSPRE-RLRAYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRL 203
Cdd:PTZ00265 1327 DVKRACKFAAIDEFIE--SLPNKYDtNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDI 1404
|
170 180
....*....|....*....|....*..
gi 1806544180 204 CRETGTALIWITHDLAVVAgLADRIAV 230
Cdd:PTZ00265 1405 KDKADKTIITIAHRIASIK-RSDKIVV 1430
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
27-246 |
4.04e-09 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 57.58 E-value: 4.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 27 VDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDepGRIVEGAILFDGEDLRQADAKRwralrgeeMAMIFQDPMmtL 106
Cdd:PLN03211 84 LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ--GNNFTGTILANNRKPTKQILKR--------TGFVTQDDI--L 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 107 NPVLRVDTQMVETVLAH--HDVSRSQAMARALEVLTMVGIPSPRERL--RAYPHELSGGMRQRVAIAIALLNSPRVIIAD 182
Cdd:PLN03211 152 YPHLTVRETLVFCSLLRlpKSLTKQEKILVAESVISELGLTKCENTIigNSFIRGISGGERKRVSIAHEMLINPSLLILD 231
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1806544180 183 EPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDVI 246
Cdd:PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
157-232 |
4.08e-09 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 57.49 E-value: 4.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 157 ELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVtiqaqilYE---VRRLCRE---TGTALIWITHDLAVVAGLADRIAV 230
Cdd:COG1245 212 ELSGGELQRVAIAAALLRDADFYFFDEPSSYLDI-------YQrlnVARLIRElaeEGKYVLVVEHDLAILDYLADYVHI 284
|
..
gi 1806544180 231 MY 232
Cdd:COG1245 285 LY 286
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
157-232 |
4.15e-09 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 57.51 E-value: 4.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 157 ELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVtiqaqilYE---VRRLCRE--TGTALIWITHDLAVVAGLADRIAVM 231
Cdd:PRK13409 212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLDI-------RQrlnVARLIRElaEGKYVLVVEHDLAVLDYLADNVHIA 284
|
.
gi 1806544180 232 Y 232
Cdd:PRK13409 285 Y 285
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
29-240 |
4.48e-09 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 56.34 E-value: 4.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 29 GVDLYLRQGEILGLVGESGSGKSITGFSLMGllDEPGRIVEGAILFDGEDLRQADAKRwRAlrGEEMAMIFQDPMmtlnP 108
Cdd:PRK09580 19 GLNLEVRPGEVHAIMGPNGSGKSTLSATLAG--REDYEVTGGTVEFKGKDLLELSPED-RA--GEGIFMAFQYPV----E 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 109 VLRVDTQM-VETVLAHHDVSRSQA----------MARALEVLTMvgipsPRERL-RAYPHELSGGMRQRVAIAIALLNSP 176
Cdd:PRK09580 90 IPGVSNQFfLQTALNAVRSYRGQEpldrfdfqdlMEEKIALLKM-----PEDLLtRSVNVGFSGGEKKRNDILQMAVLEP 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1806544180 177 RVIIADEPTTALDVTIQAQILYEVRRLcRETGTALIWITHDLAVVAGLA-DRIAVMYAGRIVETG 240
Cdd:PRK09580 165 ELCILDESDSGLDIDALKIVADGVNSL-RDGKRSFIIVTHYQRILDYIKpDYVHVLYQGRIVKSG 228
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
28-246 |
5.41e-09 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 57.65 E-value: 5.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 28 DGVDLYLRQ-------GEILGLVGESGSGKSITGFSLMGLLDEpgriVEGAILFDGEDLRQADAKRWRAlrgeEMAMIFQ 100
Cdd:TIGR00957 1296 EDLDLVLRHinvtihgGEKVGIVGRTGAGKSSLTLGLFRINES----AEGEIIIDGLNIAKIGLHDLRF----KITIIPQ 1367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 101 DPM-------MTLNPVLRVDTQMVETVL--AH-HDVSRSQamaralevltmvgiPSPRERLRAYPHE-LSGGMRQRVAIA 169
Cdd:TIGR00957 1368 DPVlfsgslrMNLDPFSQYSDEEVWWALelAHlKTFVSAL--------------PDKLDHECAEGGEnLSVGQRQLVCLA 1433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 170 IALLNSPRVIIADEPTTALDVT----IQAQIlyevrRLCRETGTALIwITHDLAVVAGLAdRIAVMYAGRIVETGTSKDV 245
Cdd:TIGR00957 1434 RALLRKTKILVLDEATAAVDLEtdnlIQSTI-----RTQFEDCTVLT-IAHRLNTIMDYT-RVIVLDKGEVAEFGAPSNL 1506
|
.
gi 1806544180 246 I 246
Cdd:TIGR00957 1507 L 1507
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
25-237 |
8.50e-09 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 56.34 E-value: 8.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 25 KAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGllDEPGRIVEGAILFDGedlRQADAKRWRALRGEEMAMIFQDpMM 104
Cdd:NF040905 274 KVVDDVSLNVRRGEIVGIAGLMGAGRTELAMSVFG--RSYGRNISGTVFKDG---KEVDVSTVSDAIDAGLAYVTED-RK 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 105 TLNPVLrVDTQMVETVLAHHD-VSRSQAMARALEVLTMVGIpspRERLRAYPH-------ELSGGMRQRVAIAIALLNSP 176
Cdd:NF040905 348 GYGLNL-IDDIKRNITLANLGkVSRRGVIDENEEIKVAEEY---RKKMNIKTPsvfqkvgNLSGGNQQKVVLSKWLFTDP 423
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1806544180 177 RVIIADEPTTALDVTIQAQILYEVRRLCREtGTALIWITHDLAVVAGLADRIAVMYAGRIV 237
Cdd:NF040905 424 DVLILDEPTRGIDVGAKYEIYTIINELAAE-GKGVIVISSELPELLGMCDRIYVMNEGRIT 483
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
6-238 |
1.02e-08 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 56.23 E-value: 1.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 6 PVLDVRNLKTHFftraGVVKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLL---DEP--GRIVEGAIL----FDg 76
Cdd:COG0488 314 KVLELEGLSKSY----GDKTLLDDLSLRIDRGDRIGLIGPNGAGKS----TLLKLLageLEPdsGTVKLGETVkigyFD- 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 77 edlrqadakrwralrgeemamifQDpmmtlNPVLRVDtqmvETVLAHhdVSRSQAMARALEVLTMVGipS---PRERLRA 153
Cdd:COG0488 385 -----------------------QH-----QEELDPD----KTVLDE--LRDGAPGGTEQEVRGYLG--RflfSGDDAFK 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 154 YPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDV-TIQA--QIL--YEvrrlcretGTALIwITHDLAVVAGLADRI 228
Cdd:COG0488 429 PVGVLSGGEKARLALAKLLLSPPNVLLLDEPTNHLDIeTLEAleEALddFP--------GTVLL-VSHDRYFLDRVATRI 499
|
250
....*....|
gi 1806544180 229 AVMYAGRIVE 238
Cdd:COG0488 500 LEFEDGGVRE 509
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
28-223 |
1.20e-08 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 54.42 E-value: 1.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 28 DGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRqadakrwrALRGEemamiFQDPMMTLN 107
Cdd:PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKT----SLLRILAGLARPDAGEVLWQGEPIR--------RQRDE-----YHQDLLYLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 108 PVLRVDTQM--VETV---LAHHDVSRSQAMARALEVLTMVGipspRERLRAypHELSGGMRQRVAIAIALLNSPRVIIAD 182
Cdd:PRK13538 81 HQPGIKTELtaLENLrfyQRLHGPGDDEALWEALAQVGLAG----FEDVPV--RQLSAGQQRRVALARLWLTRAPLWILD 154
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1806544180 183 EPTTALDVTIQAQILYEVRRLCRETGTALIWITHDLAVVAG 223
Cdd:PRK13538 155 EPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASD 195
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
29-235 |
2.42e-08 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 53.24 E-value: 2.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 29 GVDLYLRQGEILGLVGESGSGKSitgfSL-MGLLDE----------PGRI-------------VEGAILFdGEDLrqaDA 84
Cdd:cd03250 23 DINLEVPKGELVAIVGPVGSGKS----SLlSALLGEleklsgsvsvPGSIayvsqepwiqngtIRENILF-GKPF---DE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 85 KRWRAlrgeemamifqdpmmtlnpVLRV-----DTQMvetvLAHHDvsrsqamaralevLTMVGipsprERLRAypheLS 159
Cdd:cd03250 95 ERYEK-------------------VIKAcalepDLEI----LPDGD-------------LTEIG-----EKGIN----LS 129
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1806544180 160 GGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEV-RRLCRETGTaLIWITHDLAVVAgLADRIAVMYAGR 235
Cdd:cd03250 130 GGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCiLGLLLNNKT-RILVTHQLQLLP-HADQIVVLDNGR 204
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
17-234 |
2.95e-08 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 53.49 E-value: 2.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 17 FFTRAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgRIVEGAILFDGEDLRQADAKRWRALRGEEMA 96
Cdd:cd03290 7 YFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM----QTLEGKVHWSNKNESEPSFEATRSRNRYSVA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 97 MIFQDPMMtLNPVLRVDTqmveTVLAHHDVSRSQAMARALEVLTMVGI-P-SPRERLRAYPHELSGGMRQRVAIAIALLN 174
Cdd:cd03290 83 YAAQKPWL-LNATVEENI----TFGSPFNKQRYKAVTDACSLQPDIDLlPfGDQTEIGERGINLSGGQRQRICVARALYQ 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1806544180 175 SPRVIIADEPTTALDVTIQAQILYE-VRRLCRETGTALIWITHDLAVVAGlADRIAVMYAG 234
Cdd:cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEgILKFLQDDKRTLVLVTHKLQYLPH-ADWIIAMKDG 217
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
158-240 |
8.05e-08 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 51.55 E-value: 8.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 158 LSGGMRQRVAIAIALLNSPR--VIIADEPTTALDVTIQAQILYEVRRLcRETGTALIWITHDLAVVAgLADRIAVM---- 231
Cdd:cd03238 88 LSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQDINQLLEVIKGL-IDLGNTVILIEHNLDVLS-SADWIIDFgpgs 165
|
90
....*....|.
gi 1806544180 232 --YAGRIVETG 240
Cdd:cd03238 166 gkSGGKVVFSG 176
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
20-246 |
8.96e-08 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 53.63 E-value: 8.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 20 RAGVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMglldepgRIVE---GAILFDGedlRQADAKRWRALRgEEMA 96
Cdd:PTZ00243 1319 REGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFM-------RMVEvcgGEIRVNG---REIGAYGLRELR-RQFS 1387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 97 MIFQDPMMTLNPVlrvdTQMVETVLAhhdvSRSQAMARALEvltMVGIpspRERLRAYPHEL-----------SGGMRQR 165
Cdd:PTZ00243 1388 MIPQDPVLFDGTV----RQNVDPFLE----ASSAEVWAALE---LVGL---RERVASESEGIdsrvleggsnySVGQRQL 1453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 166 VAIAIALLN-SPRVIIADEPTT----ALDVTIQAQIL-----YEVrrlcretgtalIWITHDLAVVAGLaDRIAVMYAGR 235
Cdd:PTZ00243 1454 MCMARALLKkGSGFILMDEATAnidpALDRQIQATVMsafsaYTV-----------ITIAHRLHTVAQY-DKIIVMDHGA 1521
|
250
....*....|.
gi 1806544180 236 IVETGTSKDVI 246
Cdd:PTZ00243 1522 VAEMGSPRELV 1532
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
36-230 |
1.36e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 50.06 E-value: 1.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 36 QGEILGLVGESGSGKSITGFSLMGLLDEPGRIVegaILFDGEDLRQADAKRWRALRGEEmamifqdpmmtlnpvlrvdtq 115
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGV---IYIDGEDILEEVLDQLLLIIVGG--------------------- 56
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 116 mvetvlahhdvsrsqamaralevltmvgipsprerlraYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQ 195
Cdd:smart00382 57 --------------------------------------KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEAL 98
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1806544180 196 ILYEVR-----RLCRETGTALIWITHDLAVVAGLADRIAV 230
Cdd:smart00382 99 LLLLEElrlllLLKSEKNLTVILTTNDEKDLGPALLRRRF 138
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
30-259 |
1.57e-07 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 51.83 E-value: 1.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 30 VDLYLRQGEILGLVGESGSGKSITGFSLMGLLDepgrIVEGAILFDGEDLRQADAKRWRAlrgeEMAMIFQDPMM----- 104
Cdd:cd03288 40 VKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD----IFDGKIVIDGIDISKLPLHTLRS----RLSIILQDPILfsgsi 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 105 --TLNPVLR-VDTQMVETVlahhDVSRSQAMARAL-----EVLTMVGipsprerlraypHELSGGMRQRVAIAIALLNSP 176
Cdd:cd03288 112 rfNLDPECKcTDDRLWEAL----EIAQLKNMVKSLpggldAVVTEGG------------ENFSVGQRQLFCLARAFVRKS 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 177 RVIIADEPTTALDVTIQaQILYEVRRLCRETGTaLIWITHDLAVVAGlADRIAVMYAGRIVETGTSKDVIGHALHPYTLG 256
Cdd:cd03288 176 SILIMDEATASIDMATE-NILQKVVMTAFADRT-VVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLLAQEDGVFASL 252
|
...
gi 1806544180 257 LMA 259
Cdd:cd03288 253 VRT 255
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
20-245 |
4.10e-07 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 51.66 E-value: 4.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 20 RAGVVKAVDGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLDEPGRIVEGAILFDGEDLRQAdakRWRALRGEEMAMIF 99
Cdd:NF033858 10 RYGKTVALDDVSLDIPAGCMVGLIGPDGVGKS----SLLSLIAGARKIQQGRVEVLGGDMADA---RHRRAVCPRIAYMP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 100 QDPMMTLNPVLRVdtqmVETV-----LAHHDvsRSQAMARALEVLTMVGIPSPRERLRAyphELSGGMRQRVAIAIALLN 174
Cdd:NF033858 83 QGLGKNLYPTLSV----FENLdffgrLFGQD--AAERRRRIDELLRATGLAPFADRPAG---KLSGGMKQKLGLCCALIH 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1806544180 175 SPRVIIADEPTTALDVTIQAQILYEVRRLCRETGtaliwithDLAVVAGLA--------DRIAVMYAGRIVETGTSKDV 245
Cdd:NF033858 154 DPDLLILDEPTTGVDPLSRRQFWELIDRIRAERP--------GMSVLVATAymeeaerfDWLVAMDAGRVLATGTPAEL 224
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
159-241 |
9.19e-07 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 50.78 E-value: 9.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 159 SGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCREtGTALIWITHDLAVVAGLADRIAVMYAGRIVE 238
Cdd:TIGR01257 2072 SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKGAFQC 2150
|
...
gi 1806544180 239 TGT 241
Cdd:TIGR01257 2151 LGT 2153
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
23-245 |
3.08e-06 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 48.95 E-value: 3.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 23 VVKAVDGVdlyLRQGEILGLVGESGSGKSITGFSLMGLLDEPGRIVEGAILFDGedLRQADAKRwrALRGEEMAMIFQD- 101
Cdd:TIGR00956 76 ILKPMDGL---IKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDG--ITPEEIKK--HYRGDVVYNAETDv 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 102 --PMMTLNPVLRVDTQMVETVLAHHDVSRSQAMARALEV-LTMVGIPSPR------ERLRAypheLSGGMRQRVAIAIAL 172
Cdd:TIGR00956 149 hfPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVyMATYGLSHTRntkvgnDFVRG----VSGGERKRVSIAEAS 224
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1806544180 173 LNSPRVIIADEPTTALDVTIQAQILYEVRRLCRET-GTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDV 245
Cdd:TIGR00956 225 LGGAKIQCWDNATRGLDSATALEFIRALKTSANILdTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA 298
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
30-238 |
4.40e-06 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 48.26 E-value: 4.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 30 VDLYLRQGEILGLVGESGSGKS-----ITGfslmglLDEPgriVEGAILFDGEDLRQADAKRWRALrgeeMAMIFQDPMM 104
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKStlaklLTG------LYRP---ESGEILLDGQPVTADNREAYRQL----FSAVFSDFHL 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 105 ---TLNPVLRVDTQMVETVLA----HHDVSRSQamaralEVLTMVgipsprerlrayphELSGGMRQRVAIAIALL-NSP 176
Cdd:COG4615 418 fdrLLGLDGEADPARARELLErlelDHKVSVED------GRFSTT--------------DLSQGQRKRLALLVALLeDRP 477
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1806544180 177 rVIIADEptTALDvtiQ---------AQILYEVRRLcretGTALIWITHDLAvVAGLADRIAVMYAGRIVE 238
Cdd:COG4615 478 -ILVFDE--WAAD---QdpefrrvfyTELLPELKAR----GKTVIAISHDDR-YFDLADRVLKMDYGKLVE 537
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
28-216 |
7.28e-06 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 46.08 E-value: 7.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 28 DGVDLYLRQGEILGLVGESGSGKSitgfSLMGLLdePGR----IVEGAILFDGEDLRQADAKRwralrgeemamifqdpm 103
Cdd:cd03232 24 NNISGYVKPGTLTALMGESGAGKT----TLLDVL--AGRktagVITGEILINGRPLDKNFQRS----------------- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 104 mtlnpvlrvdTQMVETVLAHhdvsrsqamaraLEVLTMvgipspRERLR--AYPHELSGGMRQRVAIAIALLNSPRVIIA 181
Cdd:cd03232 81 ----------TGYVEQQDVH------------SPNLTV------REALRfsALLRGLSVEQRKRLTIGVELAAKPSILFL 132
|
170 180 190
....*....|....*....|....*....|....*...
gi 1806544180 182 DEPTTALDvtiqAQILYEVRRLCR---ETGTALIWITH 216
Cdd:cd03232 133 DEPTSGLD----SQAAYNIVRFLKklaDSGQAILCTIH 166
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
31-250 |
7.53e-06 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 47.32 E-value: 7.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 31 DLYLRQGEILGLVGESGSGKSITGFSLMGLLdepgrivegaILFDGEdlRQADAKRWRALRGEEMAMIFQDPMMTLNPVL 110
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGEL----------PLLSGE--RQSQFSHITRLSFEQLQKLVSDEWQRNNTDM 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 111 ---------RVDTQMVEtvLAHHDVSRSQAMARALevltmvGIPSPRERLRAYpheLSGGMRQRVAIAIALLNSPRVIIA 181
Cdd:PRK10938 91 lspgeddtgRTTAEIIQ--DEVKDPARCEQLAQQF------GITALLDRRFKY---LSTGETRKTLLCQALMSEPDLLIL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1806544180 182 DEPTTALDVTIQAQILYEVRRLCREtGTALIWITHDLAVVAGLADRIAVMYAGRIVETGTSKDVIGHAL 250
Cdd:PRK10938 160 DEPFDGLDVASRQQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQAL 227
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
19-216 |
7.77e-06 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 47.53 E-value: 7.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 19 TRAGVVKAVDGVdlyLRQGEILGLVGESGSGKSitgfSLMGLL--DEPGRIVEGAILFDGEDLRQADAKRwraLRGEEMA 96
Cdd:PLN03140 891 DRLQLLREVTGA---FRPGVLTALMGVSGAGKT----TLMDVLagRKTGGYIEGDIRISGFPKKQETFAR---ISGYCEQ 960
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 97 MIFQDPMMTL------NPVLRVDTQmvetvlahhdVSRSQAMARALEVLTMVGIPSPRERLRAYP--HELSGGMRQRVAI 168
Cdd:PLN03140 961 NDIHSPQVTVresliySAFLRLPKE----------VSKEEKMMFVDEVMELVELDNLKDAIVGLPgvTGLSTEQRKRLTI 1030
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1806544180 169 AIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLCrETGTALIWITH 216
Cdd:PLN03140 1031 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIH 1077
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
142-243 |
1.10e-05 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 45.04 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 142 VGIPSPRERLRAYP--HELSGGMRQRVAIAIAL-----LNSPRVIIaDEPTTALDVTIQAQILYEVRRLcRETGTALIWI 214
Cdd:cd03227 60 AGCIVAAVSAELIFtrLQLSGGEKELSALALILalaslKPRPLYIL-DEIDRGLDPRDGQALAEAILEH-LVKGAQVIVI 137
|
90 100
....*....|....*....|....*....
gi 1806544180 215 THDLAVVAgLADRIAVMYAgriVETGTSK 243
Cdd:cd03227 138 THLPELAE-LADKLIHIKK---VITGVYK 162
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
158-244 |
1.43e-05 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 46.70 E-value: 1.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 158 LSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVrRLCRETGTALIWITHDLAVVAgLADRIAVMYAGRIV 237
Cdd:PTZ00243 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEEC-FLGALAGKTRVLATHQVHVVP-RADYVVALGDGRVE 860
|
....*..
gi 1806544180 238 ETGTSKD 244
Cdd:PTZ00243 861 FSGSSAD 867
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
157-216 |
2.08e-05 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 45.90 E-value: 2.08e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 157 ELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILyevrRLCRETGTALIWITH 216
Cdd:TIGR00954 582 VLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMY----RLCREFGITLFSVSH 637
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
18-217 |
2.09e-05 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 46.08 E-value: 2.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 18 FTRAGVVKAVDG-----VDLYLR--QGEILGLVGESGSGKSiTGFSLMGLLDEPgrivegailFDGEDLRQADAKRW--- 87
Cdd:TIGR03719 5 YTMNRVSKVVPPkkeilKDISLSffPGAKIGVLGLNGAGKS-TLLRIMAGVDKD---------FNGEARPQPGIKVGylp 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 88 -----------------------RAL-RGEEMAMIFQDPMMTLNPVLRVDTQMVETVLAH--HDVSR--SQAMaralevl 139
Cdd:TIGR03719 75 qepqldptktvrenveegvaeikDALdRFNEISAKYAEPDADFDKLAAEQAELQEIIDAAdaWDLDSqlEIAM------- 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 140 tmvgipsprERLRAYPHE-----LSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTiqaQILYEVRRLCRETGTALIwI 214
Cdd:TIGR03719 148 ---------DALRCPPWDadvtkLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAE---SVAWLERHLQEYPGTVVA-V 214
|
...
gi 1806544180 215 THD 217
Cdd:TIGR03719 215 THD 217
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
131-246 |
3.06e-05 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 45.77 E-value: 3.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 131 AMARALEVLTMVGIPSPRERLRAYphELSGGMRQRVAIAIALL---NSPRVIIADEPTTAL---DVtiqAQILYEVRRLc 204
Cdd:TIGR00630 805 SISRKLQTLCDVGLGYIRLGQPAT--TLSGGEAQRIKLAKELSkrsTGRTLYILDEPTTGLhfdDI---KKLLEVLQRL- 878
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1806544180 205 RETGTALIWITHDLAVVAgLADRIAVM------YAGRIVETGTSKDVI 246
Cdd:TIGR00630 879 VDKGNTVVVIEHNLDVIK-TADYIIDLgpeggdGGGTVVASGTPEEVA 925
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
18-246 |
4.53e-05 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 45.32 E-value: 4.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 18 FTRA-GVVKAVDGVDLYLRQGEILGLVGESGSGKSITGFSLMGLLDEpgriVEGAILFDGEdlrqadakrwralrgeeMA 96
Cdd:TIGR00957 644 FTWArDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK----VEGHVHMKGS-----------------VA 702
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 97 MIFQDPMMTlNPVLRvdtqmvETVLAHHDVS--RSQAMARALEVLTMVGI-PS-PRERLRAYPHELSGGMRQRVAIAIAL 172
Cdd:TIGR00957 703 YVPQQAWIQ-NDSLR------ENILFGKALNekYYQQVLEACALLPDLEIlPSgDRTEIGEKGVNLSGGQKQRVSLARAV 775
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1806544180 173 LNSPRVIIADEPTTALDVTIQAQILYEV---RRLCRetGTALIWITHDLAVVAGLaDRIAVMYAGRIVETGTSKDVI 246
Cdd:TIGR00957 776 YSNADIYLFDDPLSAVDAHVGKHIFEHVigpEGVLK--NKTRILVTHGISYLPQV-DVIIVMSGGKISEMGSYQELL 849
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
7-229 |
1.64e-04 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 43.00 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 7 VLDVRNLKTHFFTRAgvvkAVDGVDLYLRQGEILGLVGESGSGKSiTGFSLMGLLDEP--GRIVEGailfdgedlrqada 84
Cdd:TIGR03719 322 VIEAENLTKAFGDKL----LIDDLSFKLPPGGIVGVIGPNGAGKS-TLFRMITGQEQPdsGTIEIG-------------- 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 85 krwralrgeemamifqdpmmtlnpvlrvdtqmvETV-LAHHDVSRS---------QAMARALEVLTM--VGIPSprerlR 152
Cdd:TIGR03719 383 ---------------------------------ETVkLAYVDQSRDaldpnktvwEEISGGLDIIKLgkREIPS-----R 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 153 AY--------------PHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDV-TIQAqiLYEVrrLCRETGTALIwITHD 217
Cdd:TIGR03719 425 AYvgrfnfkgsdqqkkVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVeTLRA--LEEA--LLNFAGCAVV-ISHD 499
|
250
....*....|....*
gi 1806544180 218 ---LavvaglaDRIA 229
Cdd:TIGR03719 500 rwfL-------DRIA 507
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
147-244 |
1.68e-04 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 43.31 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 147 PRERLRAY--------------PHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDVT-----IQAQILYEvrrlcret 207
Cdd:PLN03073 603 PEQKLRAHlgsfgvtgnlalqpMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDavealIQGLVLFQ-------- 674
|
90 100 110
....*....|....*....|....*....|....*...
gi 1806544180 208 GTALIwITHDLAVVAGLADRIAVMYAGRIVE-TGTSKD 244
Cdd:PLN03073 675 GGVLM-VSHDEHLISGSVDELWVVSEGKVTPfHGTFHD 711
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
41-217 |
2.02e-04 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 42.96 E-value: 2.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 41 GLVGESGSGKSitgfSLMGLLD------------EPG-RIvegAIL----FDGEDLR------QADAKRWRALrgEEMAM 97
Cdd:PRK15064 31 GLIGANGCGKS----TFMKILGgdlepsagnvslDPNeRL---GKLrqdqFAFEEFTvldtviMGHTELWEVK--QERDR 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 98 IFQDPMMTLNPVLRVDTqmVETVLAHHDvsRSQAMARALEVLTMVGIPSPRerlraypH-----ELSGGMRQRVAIAIAL 172
Cdd:PRK15064 102 IYALPEMSEEDGMKVAD--LEVKFAEMD--GYTAEARAGELLLGVGIPEEQ-------HyglmsEVAPGWKLRVLLAQAL 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1806544180 173 LNSPRVIIADEPTTALDV-TIQ--AQILYEvrRLCretgTALIwITHD 217
Cdd:PRK15064 171 FSNPDILLLDEPTNNLDInTIRwlEDVLNE--RNS----TMII-ISHD 211
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
158-241 |
3.71e-04 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 42.27 E-value: 3.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 158 LSGGMRQRVAIAIALLNSPRVIIADEPTTALDvtiqAQILYEVRRLCRE---TGTALIWITHDLAVVAgLADRIAVMYAG 234
Cdd:PLN03232 741 ISGGQKQRVSMARAVYSNSDIYIFDDPLSALD----AHVAHQVFDSCMKdelKGKTRVLVTNQLHFLP-LMDRIILVSEG 815
|
....*..
gi 1806544180 235 RIVETGT 241
Cdd:PLN03232 816 MIKEEGT 822
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
158-246 |
4.38e-04 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 42.03 E-value: 4.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 158 LSGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQ-----ILYEVRRLCRETGTALIwitHDLAVVaglaDRIAVMY 232
Cdd:PLN03130 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQvfdkcIKDELRGKTRVLVTNQL---HFLSQV----DRIILVH 813
|
90
....*....|....
gi 1806544180 233 AGRIVETGTSKDVI 246
Cdd:PLN03130 814 EGMIKEEGTYEELS 827
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
82-244 |
7.52e-04 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 41.35 E-value: 7.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 82 ADAKRWRalrGEEMAMiFQDpmMTLNPVLRVDTQMVETVLAHHDVSrsQAMARALEVLTMVGIP--SPRERLRAypheLS 159
Cdd:PRK00635 411 ANAATWH---GKTFAE-FQQ--MSLQELFIFLSQLPSKSLSIEEVL--QGLKSRLSILIDLGLPylTPERALAT----LS 478
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 160 GGMRQRVAIAIALLNSPRVI--IADEPTTALDVTIQAQILYEVRRLcRETGTALIWITHDLAVVAgLADRI------AVM 231
Cdd:PRK00635 479 GGEQERTALAKHLGAELIGItyILDEPSIGLHPQDTHKLINVIKKL-RDQGNTVLLVEHDEQMIS-LADRIidigpgAGI 556
|
170
....*....|...
gi 1806544180 232 YAGRIVETGTSKD 244
Cdd:PRK00635 557 FGGEVLFNGSPRE 569
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
158-223 |
9.49e-04 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 40.87 E-value: 9.49e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 158 LSGGMRQRVAIAIALLNSPRVIIADEPTTALDvtiqAQ-ILYEVRRLCRETGTALIwITHD---LAVVAG 223
Cdd:PRK11819 164 LSGGERRRVALCRLLLEKPDMLLLDEPTNHLD----AEsVAWLEQFLHDYPGTVVA-VTHDryfLDNVAG 228
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
144-217 |
1.93e-03 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 38.74 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 144 IPSPRERLrayphelSGGmrQRVAIAIAL---------LNSPrVIIADEPTTALDV-TIQAQILYEVRRLCRETGTALIW 213
Cdd:cd03240 109 LLDMRGRC-------SGG--EKVLASLIIrlalaetfgSNCG-ILALDEPTTNLDEeNIEESLAEIIEERKSQKNFQLIV 178
|
....
gi 1806544180 214 ITHD 217
Cdd:cd03240 179 ITHD 182
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
158-244 |
2.04e-03 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 39.88 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 158 LSGGMRQRVAIAIALLNSPRVIIADEPTTALDV-TIQ----AQILYEvrrlcretGTaLIWITHDLAVVAGLADRIAVMY 232
Cdd:PRK15064 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMeSIEslnmALEKYE--------GT-LIFVSHDREFVSSLATRIIEIT 509
|
90
....*....|...
gi 1806544180 233 AGRIVE-TGTSKD 244
Cdd:PRK15064 510 PDGVVDfSGTYEE 522
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
131-190 |
2.64e-03 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 39.46 E-value: 2.64e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 131 AMARALEVLTMVGIpSPRERLRAyPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDV 190
Cdd:PLN03073 320 AEARAASILAGLSF-TPEMQVKA-TKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDL 377
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
159-248 |
2.81e-03 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 38.64 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 159 SGGMRQRVAIAIALLNSPRVIIADEPTTALDVTIQAQILYEVRRLcRETGTALIWITHDLAVVAGLADRIAVMYAGRIVE 238
Cdd:PRK13546 145 SSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEF-KEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD 223
|
90
....*....|
gi 1806544180 239 TGTSKDVIGH 248
Cdd:PRK13546 224 YGELDDVLPK 233
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
133-228 |
3.61e-03 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 39.00 E-value: 3.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 133 ARALEVLTMVGIPspRERLRAYPHELSGGMRQRVAIAIALLNSPRVIIADEPTTALDvtIQAQILYEvRRLCRETGTaLI 212
Cdd:PRK10636 127 SRAASLLHGLGFS--NEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD--LDAVIWLE-KWLKSYQGT-LI 200
|
90
....*....|....*.
gi 1806544180 213 WITHDLAVVAGLADRI 228
Cdd:PRK10636 201 LISHDRDFLDPIVDKI 216
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
143-241 |
3.82e-03 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 38.36 E-value: 3.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806544180 143 GIPSPrerlrayphELSGGMRQRVAIAIALLNSPR---VIIADEPTTAL---DVtiqaQILYEVRRLCRETGTALIWITH 216
Cdd:cd03271 164 GQPAT---------TLSGGEAQRIKLAKELSKRSTgktLYILDEPTTGLhfhDV----KKLLEVLQRLVDKGNTVVVIEH 230
|
90 100 110
....*....|....*....|....*....|.
gi 1806544180 217 DLAVVAgLADRIAVM------YAGRIVETGT 241
Cdd:cd03271 231 NLDVIK-CADWIIDLgpeggdGGGQVVASGT 260
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
158-221 |
7.04e-03 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 38.01 E-value: 7.04e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1806544180 158 LSGGMRQRVAIAIALLNSPRVIIADEPTTALDV-TIqaQILYEVrrLCRETGTALIwITHDLAVV 221
Cdd:PRK11147 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVeTL--ELLEEL--LDSYQGTVLL-VSHDRQFV 500
|
|
| |
