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Conserved domains on  [gi|2444587056|ref|WP_273604620|]
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MULTISPECIES: retention module-containing protein [unclassified Pseudoalteromonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4254 super family cl27114
Uncharacterized peptidoglycan binding protein, contains LysM and FecR domains [General ...
 8-85 4.65e-05

Uncharacterized peptidoglycan binding protein, contains LysM and FecR domains [General function prediction only];


The actual alignment was detected with superfamily member COG4254:

Pssm-ID: 443396 [Multi-domain]  Cd Length: 207  Bit Score: 43.13  E-value: 4.65e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2444587056   8 VIDLKGSAGVVLEDGTIKPLEVGDTITVGDSVVTADNSSLTIDV-QGETLSIPANQNVKItpDLLAQETRDSSETTVFD 85
Cdd:COG4254    34 VVAVSGEVTAVRADGKWRPLKVGDPLFEGDRIRTGANSRAQLRFaDGSRLRLGPNSELRI--DELRYDPGTGSGDTVLE 110
Big_13 super family cl40590
Bacterial Ig-like domain; Presumed domain found as tandem repeats of high sequence identity in ...
 188-262 1.29e-03

Bacterial Ig-like domain; Presumed domain found as tandem repeats of high sequence identity in bacterial cell surface proteins.


The actual alignment was detected with superfamily member pfam19077:

Pssm-ID: 465968 [Multi-domain]  Cd Length: 102  Bit Score: 37.25  E-value: 1.29e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2444587056 188 DDGTASISLNEVGLTNSSQPTISGTSENlvGETVNITVTDeNGNSQVVSAVIGPDGTFEITLPNPIADGPVSVVV 262
Cdd:pfam19077  10 AAGSDTGVSDSDNITNDTTPTFTGTNED--GDVVTVTVSI-DGNGVTGTATAGADGNWSFTPPAALADGTYTLTV 81
retention_LapA super family cl44453
retention module-containing protein; The retention module, as described for the giant adhesin ...
 11-167 2.63e-03

retention module-containing protein; The retention module, as described for the giant adhesin LapA of Pseudomonas fluorescens and for an ice-binding giant adhesin of an Antarctic bacterium, appears at the N-terminus of a number of very large repetitive proteins, many of which have C-terminal regions that make them substrates for type I secretion systems.


The actual alignment was detected with superfamily member NF033682:

Pssm-ID: 468140  Cd Length: 145  Bit Score: 37.23  E-value: 2.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2444587056  11 LKGSAGVVLEDGTIKPLEVGDTITVGDSVVTADNSSLTIDVQ-GETLSIPANQNVKITPDL-LAQETRDSSETTVFDESL 88
Cdd:NF033682    9 VSGTVFAVNADGSVRVLKVGDTLQAGEIVITGNGAAVELQLAdGSTLTLGENCVACVTEDNgLIEFDAEEAAAASFDDPD 88

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2444587056  89 DAAIasleqtdnndgqtaansdvtdfLDALEGDGDILDNLEATAAgGAGGAGSGGGSSFVQLTRIAEGANPnSVAFDSS 167
Cdd:NF033682   89 IAAI----------------------QAAILAGADPTELLEATAA-GLAGGAGGAGGGFVTIDRNGDEVLP-STGFPTA 143
 
Name Accession Description Interval E-value
COG4254 COG4254
Uncharacterized peptidoglycan binding protein, contains LysM and FecR domains [General ...
 8-85 4.65e-05

Uncharacterized peptidoglycan binding protein, contains LysM and FecR domains [General function prediction only];


Pssm-ID: 443396 [Multi-domain]  Cd Length: 207  Bit Score: 43.13  E-value: 4.65e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2444587056   8 VIDLKGSAGVVLEDGTIKPLEVGDTITVGDSVVTADNSSLTIDV-QGETLSIPANQNVKItpDLLAQETRDSSETTVFD 85
Cdd:COG4254    34 VVAVSGEVTAVRADGKWRPLKVGDPLFEGDRIRTGANSRAQLRFaDGSRLRLGPNSELRI--DELRYDPGTGSGDTVLE 110
Big_13 pfam19077
Bacterial Ig-like domain; Presumed domain found as tandem repeats of high sequence identity in ...
 188-262 1.29e-03

Bacterial Ig-like domain; Presumed domain found as tandem repeats of high sequence identity in bacterial cell surface proteins.


Pssm-ID: 465968 [Multi-domain]  Cd Length: 102  Bit Score: 37.25  E-value: 1.29e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2444587056 188 DDGTASISLNEVGLTNSSQPTISGTSENlvGETVNITVTDeNGNSQVVSAVIGPDGTFEITLPNPIADGPVSVVV 262
Cdd:pfam19077  10 AAGSDTGVSDSDNITNDTTPTFTGTNED--GDVVTVTVSI-DGNGVTGTATAGADGNWSFTPPAALADGTYTLTV 81
retention_LapA NF033682
retention module-containing protein; The retention module, as described for the giant adhesin ...
 11-167 2.63e-03

retention module-containing protein; The retention module, as described for the giant adhesin LapA of Pseudomonas fluorescens and for an ice-binding giant adhesin of an Antarctic bacterium, appears at the N-terminus of a number of very large repetitive proteins, many of which have C-terminal regions that make them substrates for type I secretion systems.


Pssm-ID: 468140  Cd Length: 145  Bit Score: 37.23  E-value: 2.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2444587056  11 LKGSAGVVLEDGTIKPLEVGDTITVGDSVVTADNSSLTIDVQ-GETLSIPANQNVKITPDL-LAQETRDSSETTVFDESL 88
Cdd:NF033682    9 VSGTVFAVNADGSVRVLKVGDTLQAGEIVITGNGAAVELQLAdGSTLTLGENCVACVTEDNgLIEFDAEEAAAASFDDPD 88

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2444587056  89 DAAIasleqtdnndgqtaansdvtdfLDALEGDGDILDNLEATAAgGAGGAGSGGGSSFVQLTRIAEGANPnSVAFDSS 167
Cdd:NF033682   89 IAAI----------------------QAAILAGADPTELLEATAA-GLAGGAGGAGGGFVTIDRNGDEVLP-STGFPTA 143
 
Name Accession Description Interval E-value
COG4254 COG4254
Uncharacterized peptidoglycan binding protein, contains LysM and FecR domains [General ...
 8-85 4.65e-05

Uncharacterized peptidoglycan binding protein, contains LysM and FecR domains [General function prediction only];


Pssm-ID: 443396 [Multi-domain]  Cd Length: 207  Bit Score: 43.13  E-value: 4.65e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2444587056   8 VIDLKGSAGVVLEDGTIKPLEVGDTITVGDSVVTADNSSLTIDV-QGETLSIPANQNVKItpDLLAQETRDSSETTVFD 85
Cdd:COG4254    34 VVAVSGEVTAVRADGKWRPLKVGDPLFEGDRIRTGANSRAQLRFaDGSRLRLGPNSELRI--DELRYDPGTGSGDTVLE 110
Big_13 pfam19077
Bacterial Ig-like domain; Presumed domain found as tandem repeats of high sequence identity in ...
 188-262 1.29e-03

Bacterial Ig-like domain; Presumed domain found as tandem repeats of high sequence identity in bacterial cell surface proteins.


Pssm-ID: 465968 [Multi-domain]  Cd Length: 102  Bit Score: 37.25  E-value: 1.29e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2444587056 188 DDGTASISLNEVGLTNSSQPTISGTSENlvGETVNITVTDeNGNSQVVSAVIGPDGTFEITLPNPIADGPVSVVV 262
Cdd:pfam19077  10 AAGSDTGVSDSDNITNDTTPTFTGTNED--GDVVTVTVSI-DGNGVTGTATAGADGNWSFTPPAALADGTYTLTV 81
retention_LapA NF033682
retention module-containing protein; The retention module, as described for the giant adhesin ...
 11-167 2.63e-03

retention module-containing protein; The retention module, as described for the giant adhesin LapA of Pseudomonas fluorescens and for an ice-binding giant adhesin of an Antarctic bacterium, appears at the N-terminus of a number of very large repetitive proteins, many of which have C-terminal regions that make them substrates for type I secretion systems.


Pssm-ID: 468140  Cd Length: 145  Bit Score: 37.23  E-value: 2.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2444587056  11 LKGSAGVVLEDGTIKPLEVGDTITVGDSVVTADNSSLTIDVQ-GETLSIPANQNVKITPDL-LAQETRDSSETTVFDESL 88
Cdd:NF033682    9 VSGTVFAVNADGSVRVLKVGDTLQAGEIVITGNGAAVELQLAdGSTLTLGENCVACVTEDNgLIEFDAEEAAAASFDDPD 88

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2444587056  89 DAAIasleqtdnndgqtaansdvtdfLDALEGDGDILDNLEATAAgGAGGAGSGGGSSFVQLTRIAEGANPnSVAFDSS 167
Cdd:NF033682   89 IAAI----------------------QAAILAGADPTELLEATAA-GLAGGAGGAGGGFVTIDRNGDEVLP-STGFPTA 143
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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