NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2747345626|gb|XCA46278|]
View 

cytochrome b, partial (mitochondrion) [Rousettus aegyptiacus]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-94 3.51e-55

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 174.83  E-value: 3.51e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747345626   1 DKATLTRFFAFHFLLPFIIAALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYHTIKDALGTLIMLLVLLTLVLFSPDLL 80
Cdd:MTH00100  171 DKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLL 250

                          90
                  ....*....|....
gi 2747345626  81 GDPDNYIPANPLNT 94
Cdd:MTH00100  251 GDPDNYTPANPLNT 264
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-94 3.51e-55

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 174.83  E-value: 3.51e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747345626   1 DKATLTRFFAFHFLLPFIIAALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYHTIKDALGTLIMLLVLLTLVLFSPDLL 80
Cdd:MTH00100  171 DKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLL 250

                          90
                  ....*....|....
gi 2747345626  81 GDPDNYIPANPLNT 94
Cdd:MTH00100  251 GDPDNYTPANPLNT 264
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
3-94 5.35e-22

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 87.54  E-value: 5.35e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747345626   3 ATLTRFFAFH-FLLPFIIAALVMVHLLFLHETGSNNPTGI----PSDMDMIPFHPYHTIKDALGTLIMLLVLLTLVLFSP 77
Cdd:COG1290   184 ATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP 263

                          90
                  ....*....|....*..
gi 2747345626  78 DllGDPDNYIPANPLNT 94
Cdd:COG1290   264 I--NPPPNYGPANPLAT 278
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-83 2.24e-13

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 61.49  E-value: 2.24e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747345626   1 DKATLTRFFAFHF-LLPFIIAALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYHTIKDALGTLIMLLVLLTLVLFSPDL 79
Cdd:pfam13631  86 GTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQINPIW 165


                  ....
gi 2747345626  80 LGDP 83
Cdd:pfam13631 166 LGGP 169
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-36 2.70e-13

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 62.00  E-value: 2.70e-13
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2747345626   1 DKATLTRFFAFHFLLPFIIAALVMVHLLFLHETGSN 36
Cdd:cd00284   165 DNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-94 3.51e-55

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 174.83  E-value: 3.51e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747345626   1 DKATLTRFFAFHFLLPFIIAALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYHTIKDALGTLIMLLVLLTLVLFSPDLL 80
Cdd:MTH00100  171 DKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLL 250

                          90
                  ....*....|....
gi 2747345626  81 GDPDNYIPANPLNT 94
Cdd:MTH00100  251 GDPDNYTPANPLNT 264
CYTB MTH00131
cytochrome b; Provisional
 1-94 7.53e-46

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 150.57  E-value: 7.53e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747345626   1 DKATLTRFFAFHFLLPFIIAALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYHTIKDALGTLIMLLVLLTLVLFSPDLL 80
Cdd:MTH00131  171 DNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLL 250

                          90
                  ....*....|....
gi 2747345626  81 GDPDNYIPANPLNT 94
Cdd:MTH00131  251 GDPDNFTPANPLVT 264
CYTB MTH00119
cytochrome b; Provisional
 1-94 9.51e-46

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 150.44  E-value: 9.51e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747345626   1 DKATLTRFFAFHFLLPFIIAALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYHTIKDALGTLIMLLVLLTLVLFSPDLL 80
Cdd:MTH00119  172 DNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLL 251

                          90
                  ....*....|....
gi 2747345626  81 GDPDNYIPANPLNT 94
Cdd:MTH00119  252 GDPENFTPANPLVT 265
CYTB MTH00156
cytochrome b; Provisional
 1-94 7.43e-44

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 144.92  E-value: 7.43e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747345626   1 DKATLTRFFAFHFLLPFIIAALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYHTIKDALGTLIMLLVLLTLVLFSPDLL 80
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                          90
                  ....*....|....
gi 2747345626  81 GDPDNYIPANPLNT 94
Cdd:MTH00156  241 GDPENFIPANPLVT 254
CYTB MTH00191
cytochrome b; Provisional
 1-94 3.50e-43

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 143.52  E-value: 3.50e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747345626   1 DKATLTRFFAFHFLLPFIIAALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYHTIKDALGTLIMLLVLLTLVLFSPDLL 80
Cdd:MTH00191  168 DNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLL 247

                          90
                  ....*....|....
gi 2747345626  81 GDPDNYIPANPLNT 94
Cdd:MTH00191  248 GDPENFIPANPLVT 261
CYTB MTH00074
cytochrome b; Provisional
 1-94 4.79e-43

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 143.28  E-value: 4.79e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747345626   1 DKATLTRFFAFHFLLPFIIAALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYHTIKDALGTLIMLLVLLTLVLFSPDLL 80
Cdd:MTH00074  172 DKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLL 251

                          90
                  ....*....|....
gi 2747345626  81 GDPDNYIPANPLNT 94
Cdd:MTH00074  252 GDPDNFTPANPLVT 265
CYTB MTH00145
cytochrome b; Provisional
 1-94 1.96e-41

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 139.27  E-value: 1.96e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747345626   1 DKATLTRFFAFHFLLPFIIAALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYHTIKDALGTLIMLLVLLTLVLFSPDLL 80
Cdd:MTH00145  172 GNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLL 251

                          90
                  ....*....|....
gi 2747345626  81 GDPDNYIPANPLNT 94
Cdd:MTH00145  252 GDPENFIPANPMVT 265
CYTB MTH00016
cytochrome b; Validated
 1-94 7.72e-41

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 137.50  E-value: 7.72e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747345626   1 DKATLTRFFAFHFLLPFIIAALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYHTIKDALGTLIMLLVLLTLVLFSPDLL 80
Cdd:MTH00016  172 DNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNIL 251

                          90
                  ....*....|....
gi 2747345626  81 GDPDNYIPANPLNT 94
Cdd:MTH00016  252 GDPENFIPANPLVT 265
CYTB MTH00034
cytochrome b; Validated
 1-94 8.66e-39

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 132.14  E-value: 8.66e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747345626   1 DKATLTRFFAFHFLLPFIIAALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYHTIKDALGTLIMLLVLLTLVLFSPDLL 80
Cdd:MTH00034  171 DNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTAL 250

                          90
                  ....*....|....
gi 2747345626  81 GDPDNYIPANPLNT 94
Cdd:MTH00034  251 NDPENFIPANPLVT 264
CYTB MTH00224
cytochrome b; Provisional
 1-94 1.14e-33

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 118.87  E-value: 1.14e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747345626   1 DKATLTRFFAFHFLLPFIIAALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYHTIKDALGTLIMLLVLLTLVLFSPDLL 80
Cdd:MTH00224  172 DNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLF 251

                          90
                  ....*....|....
gi 2747345626  81 GDPDNYIPANPLNT 94
Cdd:MTH00224  252 TDPENFLMANPLVT 265
CYTB MTH00022
cytochrome b; Validated
 3-94 1.40e-29

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 107.86  E-value: 1.40e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747345626   3 ATLTRFFAFHFLLPFIIAALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYHTIKDALGTLIMLLVLLTLVLFSPDLLGD 82
Cdd:MTH00022  172 ATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGD 251

                          90
                  ....*....|..
gi 2747345626  83 PDNYIPANPLNT 94
Cdd:MTH00022  252 PENFIQANSLVT 263
CYTB MTH00053
cytochrome b; Provisional
 3-94 1.64e-29

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 107.87  E-value: 1.64e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747345626   3 ATLTRFFAFHFLLPFIIAALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYHTIKDALGTLIMLLVLLTLVLFSPDLLGD 82
Cdd:MTH00053  174 ATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGD 253

                          90
                  ....*....|..
gi 2747345626  83 PDNYIPANPLNT 94
Cdd:MTH00053  254 AENFKQANPLVT 265
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
3-94 5.35e-22

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 87.54  E-value: 5.35e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747345626   3 ATLTRFFAFH-FLLPFIIAALVMVHLLFLHETGSNNPTGI----PSDMDMIPFHPYHTIKDALGTLIMLLVLLTLVLFSP 77
Cdd:COG1290   184 ATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP 263

                          90
                  ....*....|....*..
gi 2747345626  78 DllGDPDNYIPANPLNT 94
Cdd:COG1290   264 I--NPPPNYGPANPLAT 278
CYTB MTH00033
cytochrome b; Provisional
 4-94 5.68e-19

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 79.21  E-value: 5.68e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747345626   4 TLTRFFAFHFLLPFIIAALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYHTIKDALGTLIMLLVLLTLVLFS--PDLLG 81
Cdd:MTH00033  171 TLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQ 250

                          90
                  ....*....|...
gi 2747345626  82 DPDNYIPANPLNT 94
Cdd:MTH00033  251 DPENFIQANPLVT 263
CYTB MTH00046
cytochrome b; Validated
 4-94 7.14e-19

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 78.87  E-value: 7.14e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747345626   4 TLTRFFAFHFLLPFIIAALVMVHLLFLHETGSNNPTGIPSDM-DMIPFHPYHTIKDALGTLIMLLVLLTLVLFSPDLLGD 82
Cdd:MTH00046  165 TLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLD 244

                          90
                  ....*....|..
gi 2747345626  83 PDNYIPANPLNT 94
Cdd:MTH00046  245 IEAYLEADPLVT 256
CYTB MTH00086
cytochrome b; Provisional
 3-92 3.18e-18

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 76.90  E-value: 3.18e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747345626   3 ATLTRFFAFHFLLPFIIAALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYHTIKDALGtLIMLLVLLTLVLFSPDLLGD 82
Cdd:MTH00086  162 ATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLGD 240

                          90
                  ....*....|
gi 2747345626  83 PDNYIPANPL 92
Cdd:MTH00086  241 PEMFIEADPM 250
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-83 2.24e-13

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 61.49  E-value: 2.24e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747345626   1 DKATLTRFFAFHF-LLPFIIAALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYHTIKDALGTLIMLLVLLTLVLFSPDL 79
Cdd:pfam13631  86 GTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQINPIW 165


                  ....
gi 2747345626  80 LGDP 83
Cdd:pfam13631 166 LGGP 169
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-36 2.70e-13

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 62.00  E-value: 2.70e-13
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2747345626   1 DKATLTRFFAFHFLLPFIIAALVMVHLLFLHETGSN 36
Cdd:cd00284   165 DNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 37-94 4.29e-12

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 58.04  E-value: 4.29e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2747345626  37 NPTGIPSDMDMIPFHPYHTIKDALGTLIMLLVLLTLVLFSPDLLGDPDNYIPANPLNT 94
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLAT 58
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-34 5.68e-12

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 58.16  E-value: 5.68e-12
                          10        20        30
                  ....*....|....*....|....*....|....
gi 2747345626   1 DKATLTRFFAFHFLLPFIIAALVMVHLLFLHETG 34
Cdd:pfam00033 156 DQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
PRK03735 PRK03735
cytochrome b6; Provisional
 3-38 3.50e-04

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 37.38  E-value: 3.50e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2747345626   3 ATLTRFFAFH-FLLPFIIAALVMVHLLFLHETGSNNP 38
Cdd:PRK03735  186 QTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 2-38 1.44e-03

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 35.85  E-value: 1.44e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2747345626   2 KATLTRFFAFH-FLLPFIIAALVMVHLLFLHETGSNNP 38
Cdd:CHL00070  177 QSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGP 214
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH