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Conserved domains on  [gi|568926495|ref|XP_006537887|]
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atos homolog protein B isoform X1 [Mus musculus]

Protein Classification

FAM214 family protein( domain architecture ID 10341728)

FAM214 family protein such as proteins FAM214A and FAM214B

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Chromosome_seg pfam13889
Chromosome segregation during meiosis; The proteins come from eukaryotes, plants and animals, ...
 480-537 1.37e-19

Chromosome segregation during meiosis; The proteins come from eukaryotes, plants and animals, and are necessary for chromosome segregation during meiosis.


:

Pssm-ID: 464021  Cd Length: 55  Bit Score: 82.25  E-value: 1.37e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 568926495  480 LLCYLLHLRFRSSRSGRLSLHGDIRLLFSRRSLELDTGlpyELQAVTEAPHNPRYSPL 537
Cdd:pfam13889   1 VLRYAIHLRFCCPKSGRFYLYKDIRVVFANRVPDGDEG---KLRVETETPSNPKYSPY 55
DUF4210 super family cl16474
Domain of unknown function (DUF4210); This short domain is found in fungi, plants and animals, ...
 348-405 1.80e-10

Domain of unknown function (DUF4210); This short domain is found in fungi, plants and animals, and the proteins appear to be necessary for chromosome segregation during meiosis.


The actual alignment was detected with superfamily member pfam13915:

Pssm-ID: 404751  Cd Length: 66  Bit Score: 56.91  E-value: 1.80e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568926495  348 LLGNFEESLLRGRFA--PSGHIEgFTAEIGASGSY-------CPQHVTLPVTVTFFDVSEQNAPAPF 405
Cdd:pfam13915   1 LVGSYEESLLNGRMSttPSKPLD-FVAEIGVLGKGkcksslrCPPHLTLPFPAVFYSYGDIDKGSPY 66
 
Name Accession Description Interval E-value
Chromosome_seg pfam13889
Chromosome segregation during meiosis; The proteins come from eukaryotes, plants and animals, ...
 480-537 1.37e-19

Chromosome segregation during meiosis; The proteins come from eukaryotes, plants and animals, and are necessary for chromosome segregation during meiosis.


Pssm-ID: 464021  Cd Length: 55  Bit Score: 82.25  E-value: 1.37e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 568926495  480 LLCYLLHLRFRSSRSGRLSLHGDIRLLFSRRSLELDTGlpyELQAVTEAPHNPRYSPL 537
Cdd:pfam13889   1 VLRYAIHLRFCCPKSGRFYLYKDIRVVFANRVPDGDEG---KLRVETETPSNPKYSPY 55
DUF4210 pfam13915
Domain of unknown function (DUF4210); This short domain is found in fungi, plants and animals, ...
 348-405 1.80e-10

Domain of unknown function (DUF4210); This short domain is found in fungi, plants and animals, and the proteins appear to be necessary for chromosome segregation during meiosis.


Pssm-ID: 404751  Cd Length: 66  Bit Score: 56.91  E-value: 1.80e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568926495  348 LLGNFEESLLRGRFA--PSGHIEgFTAEIGASGSY-------CPQHVTLPVTVTFFDVSEQNAPAPF 405
Cdd:pfam13915   1 LVGSYEESLLNGRMSttPSKPLD-FVAEIGVLGKGkcksslrCPPHLTLPFPAVFYSYGDIDKGSPY 66
 
Name Accession Description Interval E-value
Chromosome_seg pfam13889
Chromosome segregation during meiosis; The proteins come from eukaryotes, plants and animals, ...
 480-537 1.37e-19

Chromosome segregation during meiosis; The proteins come from eukaryotes, plants and animals, and are necessary for chromosome segregation during meiosis.


Pssm-ID: 464021  Cd Length: 55  Bit Score: 82.25  E-value: 1.37e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 568926495  480 LLCYLLHLRFRSSRSGRLSLHGDIRLLFSRRSLELDTGlpyELQAVTEAPHNPRYSPL 537
Cdd:pfam13889   1 VLRYAIHLRFCCPKSGRFYLYKDIRVVFANRVPDGDEG---KLRVETETPSNPKYSPY 55
DUF4210 pfam13915
Domain of unknown function (DUF4210); This short domain is found in fungi, plants and animals, ...
 348-405 1.80e-10

Domain of unknown function (DUF4210); This short domain is found in fungi, plants and animals, and the proteins appear to be necessary for chromosome segregation during meiosis.


Pssm-ID: 404751  Cd Length: 66  Bit Score: 56.91  E-value: 1.80e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568926495  348 LLGNFEESLLRGRFA--PSGHIEgFTAEIGASGSY-------CPQHVTLPVTVTFFDVSEQNAPAPF 405
Cdd:pfam13915   1 LVGSYEESLLNGRMSttPSKPLD-FVAEIGVLGKGkcksslrCPPHLTLPFPAVFYSYGDIDKGSPY 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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