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Conserved domains on  [gi|1907153304|ref|XP_036019392|]
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28S ribosomal protein L42, mitochondrial-like [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MRP-S32 super family cl10899
Mitochondrial 28S ribosomal protein S32; This entry is of a family of short, approximately 100 ...
 58-151 1.47e-29

Mitochondrial 28S ribosomal protein S32; This entry is of a family of short, approximately 100 amino acid residues, proteins which are mitochondrial 28S ribosomal proteins named as MRP-S32. Their exact function could not be confirmed.


The actual alignment was detected with superfamily member pfam10210:

Pssm-ID: 462999  Cd Length: 91  Bit Score: 103.13  E-value: 1.47e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907153304  58 LTLTSDDRTVVCYHTSVDISYKHTKPISqpdhlHNKEKTHKQVLKTI---LEGKFNGLDQGPIKEQLSKVFFTTNHRWFl 134
Cdd:pfam10210   3 LAVTSDGRTIVCWHPSKDFPYEHTKPLP-----ENEEETHESVLKETlkeLKEVFKHKKPEPVREELSKLTYTTKHRWY- 76

                          90
                  ....*....|....*..
gi 1907153304 135 hGQFHRHSKKLNpPKDR 151
Cdd:pfam10210  77 -PRARDRRAKKT-PKDR 91
 
Name Accession Description Interval E-value
MRP-S32 pfam10210
Mitochondrial 28S ribosomal protein S32; This entry is of a family of short, approximately 100 ...
 58-151 1.47e-29

Mitochondrial 28S ribosomal protein S32; This entry is of a family of short, approximately 100 amino acid residues, proteins which are mitochondrial 28S ribosomal proteins named as MRP-S32. Their exact function could not be confirmed.


Pssm-ID: 462999  Cd Length: 91  Bit Score: 103.13  E-value: 1.47e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907153304  58 LTLTSDDRTVVCYHTSVDISYKHTKPISqpdhlHNKEKTHKQVLKTI---LEGKFNGLDQGPIKEQLSKVFFTTNHRWFl 134
Cdd:pfam10210   3 LAVTSDGRTIVCWHPSKDFPYEHTKPLP-----ENEEETHESVLKETlkeLKEVFKHKKPEPVREELSKLTYTTKHRWY- 76

                          90
                  ....*....|....*..
gi 1907153304 135 hGQFHRHSKKLNpPKDR 151
Cdd:pfam10210  77 -PRARDRRAKKT-PKDR 91
 
Name Accession Description Interval E-value
MRP-S32 pfam10210
Mitochondrial 28S ribosomal protein S32; This entry is of a family of short, approximately 100 ...
 58-151 1.47e-29

Mitochondrial 28S ribosomal protein S32; This entry is of a family of short, approximately 100 amino acid residues, proteins which are mitochondrial 28S ribosomal proteins named as MRP-S32. Their exact function could not be confirmed.


Pssm-ID: 462999  Cd Length: 91  Bit Score: 103.13  E-value: 1.47e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907153304  58 LTLTSDDRTVVCYHTSVDISYKHTKPISqpdhlHNKEKTHKQVLKTI---LEGKFNGLDQGPIKEQLSKVFFTTNHRWFl 134
Cdd:pfam10210   3 LAVTSDGRTIVCWHPSKDFPYEHTKPLP-----ENEEETHESVLKETlkeLKEVFKHKKPEPVREELSKLTYTTKHRWY- 76

                          90
                  ....*....|....*..
gi 1907153304 135 hGQFHRHSKKLNpPKDR 151
Cdd:pfam10210  77 -PRARDRRAKKT-PKDR 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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