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Conserved domains on  [gi|1938279660|ref|XP_037831474|]
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ral GTPase-activating protein subunit beta isoform X4 [Kryptolebias marmoratus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RALGAPB_N pfam20412
RALGAPB N-terminal domain; This putative domain is found at the N-terminus of the Ral ...
 130-241 3.95e-29

RALGAPB N-terminal domain; This putative domain is found at the N-terminus of the Ral GTPase-activating protein beta subunit. The function of this region is not known.


:

Pssm-ID: 466561  Cd Length: 125  Bit Score: 113.18  E-value: 3.95e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938279660  130 TLCQQVLSAVRSLVRKSSM-MSRETWETLLHFLLRINHAMLAPPTA-----AGVLSDLSMAVFLEVWLQSCSQCFPSRLL 203
Cdd:pfam20412    7 DLCKRVLNIYRSIARESSLeLEPETWEVLLKVLLGITDTLLRSPPIgpddlADELCEPLLQTLFEIWLRACLRCFPSPEL 86

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1938279660  204 WQTCRQMLHSWKHQPAVVEQWSRGTAALTSRLLPLVFG 241
Cdd:pfam20412   87 WKTLKKLLSRWRHRPELIEQWNKVMLALTRRLLRLLYG 124
 
Name Accession Description Interval E-value
RALGAPB_N pfam20412
RALGAPB N-terminal domain; This putative domain is found at the N-terminus of the Ral ...
 130-241 3.95e-29

RALGAPB N-terminal domain; This putative domain is found at the N-terminus of the Ral GTPase-activating protein beta subunit. The function of this region is not known.


Pssm-ID: 466561  Cd Length: 125  Bit Score: 113.18  E-value: 3.95e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938279660  130 TLCQQVLSAVRSLVRKSSM-MSRETWETLLHFLLRINHAMLAPPTA-----AGVLSDLSMAVFLEVWLQSCSQCFPSRLL 203
Cdd:pfam20412    7 DLCKRVLNIYRSIARESSLeLEPETWEVLLKVLLGITDTLLRSPPIgpddlADELCEPLLQTLFEIWLRACLRCFPSPEL 86

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1938279660  204 WQTCRQMLHSWKHQPAVVEQWSRGTAALTSRLLPLVFG 241
Cdd:pfam20412   87 WKTLKKLLSRWRHRPELIEQWNKVMLALTRRLLRLLYG 124
 
Name Accession Description Interval E-value
RALGAPB_N pfam20412
RALGAPB N-terminal domain; This putative domain is found at the N-terminus of the Ral ...
 130-241 3.95e-29

RALGAPB N-terminal domain; This putative domain is found at the N-terminus of the Ral GTPase-activating protein beta subunit. The function of this region is not known.


Pssm-ID: 466561  Cd Length: 125  Bit Score: 113.18  E-value: 3.95e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938279660  130 TLCQQVLSAVRSLVRKSSM-MSRETWETLLHFLLRINHAMLAPPTA-----AGVLSDLSMAVFLEVWLQSCSQCFPSRLL 203
Cdd:pfam20412    7 DLCKRVLNIYRSIARESSLeLEPETWEVLLKVLLGITDTLLRSPPIgpddlADELCEPLLQTLFEIWLRACLRCFPSPEL 86

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1938279660  204 WQTCRQMLHSWKHQPAVVEQWSRGTAALTSRLLPLVFG 241
Cdd:pfam20412   87 WKTLKKLLSRWRHRPELIEQWNKVMLALTRRLLRLLYG 124
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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