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Conserved domains on  [gi|1958803810|ref|XP_038940073|]
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vesicle-associated membrane protein-associated protein A isoform X3 [Rattus norvegicus]

Protein Classification

motile sperm domain-containing protein( domain architecture ID 10457611)

motile sperm domain-containing protein may form filaments, similar to major motile sperm protein (MSP) and vesicle-associated membrane protein-associated proteins

CATH:  2.60.40.10
SCOP:  4007566

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Motile_Sperm pfam00635
MSP (Major sperm protein) domain; Major sperm proteins are involved in sperm motility. These ...
 7-100 6.17e-34

MSP (Major sperm protein) domain; Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins.


:

Pssm-ID: 459882  Cd Length: 109  Bit Score: 119.01  E-value: 6.17e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803810   7 YNRPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPP 86
Cdd:pfam00635  12 FAAPGNKQGTSTLTLKNTSDKRVAFKVKTTNPKKYRVRPNYGIIKPGESVTITITRQPFDEEPGDAKKDKFVIQYAVAPG 91

                          90
                  ....*....|....*...
gi 1958803810  87 NISD----MEAVWKEAKP 100
Cdd:pfam00635  92 DEKDakeaFKRAWKTGAP 109
 
Name Accession Description Interval E-value
Motile_Sperm pfam00635
MSP (Major sperm protein) domain; Major sperm proteins are involved in sperm motility. These ...
 7-100 6.17e-34

MSP (Major sperm protein) domain; Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins.


Pssm-ID: 459882  Cd Length: 109  Bit Score: 119.01  E-value: 6.17e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803810   7 YNRPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPP 86
Cdd:pfam00635  12 FAAPGNKQGTSTLTLKNTSDKRVAFKVKTTNPKKYRVRPNYGIIKPGESVTITITRQPFDEEPGDAKKDKFVIQYAVAPG 91

                          90
                  ....*....|....*...
gi 1958803810  87 NISD----MEAVWKEAKP 100
Cdd:pfam00635  92 DEKDakeaFKRAWKTGAP 109
SCS2 COG5066
VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and ...
 4-113 6.17e-29

VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion];


Pssm-ID: 227398 [Multi-domain]  Cd Length: 242  Bit Score: 110.05  E-value: 6.17e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803810   4 DSLYNRPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDYD--PNEKSKHKFMVQT 81
Cdd:COG5066     8 QTTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEpaPDFKCRDKFLIQS 87

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1958803810  82 IFAPP--NISDMEAVWKEAKPDELMDSKLRCVFE 113
Cdd:COG5066    88 YRFDWrlSGSDFADHWTSSSKKPIWTRKIRCVYS 121
 
Name Accession Description Interval E-value
Motile_Sperm pfam00635
MSP (Major sperm protein) domain; Major sperm proteins are involved in sperm motility. These ...
 7-100 6.17e-34

MSP (Major sperm protein) domain; Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins.


Pssm-ID: 459882  Cd Length: 109  Bit Score: 119.01  E-value: 6.17e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803810   7 YNRPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPP 86
Cdd:pfam00635  12 FAAPGNKQGTSTLTLKNTSDKRVAFKVKTTNPKKYRVRPNYGIIKPGESVTITITRQPFDEEPGDAKKDKFVIQYAVAPG 91

                          90
                  ....*....|....*...
gi 1958803810  87 NISD----MEAVWKEAKP 100
Cdd:pfam00635  92 DEKDakeaFKRAWKTGAP 109
SCS2 COG5066
VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and ...
 4-113 6.17e-29

VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion];


Pssm-ID: 227398 [Multi-domain]  Cd Length: 242  Bit Score: 110.05  E-value: 6.17e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803810   4 DSLYNRPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDYD--PNEKSKHKFMVQT 81
Cdd:COG5066     8 QTTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEpaPDFKCRDKFLIQS 87

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1958803810  82 IFAPP--NISDMEAVWKEAKPDELMDSKLRCVFE 113
Cdd:COG5066    88 YRFDWrlSGSDFADHWTSSSKKPIWTRKIRCVYS 121
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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