|
Name |
Accession |
Description |
Interval |
E-value |
| KISc_CENP_E |
cd01374 |
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ... |
6-329 |
8.99e-165 |
|
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276825 [Multi-domain] Cd Length: 321 Bit Score: 509.57 E-value: 8.99e-165
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 6 AVAVCVRVRPLNSREEELGEasHIYWKTDKNAIYQSD-GGKSFQFDRVFHSNETTKNVYEEIAVPIISSAIQGYNGTIFA 84
Cdd:cd01374 1 KITVTVRVRPLNSREIGINE--QVAWEIDNDTIYLVEpPSTSFTFDHVFGGDSTNREVYELIAKPVVKSALEGYNGTIFA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 85 YGQTASGKTHTMMGSEDCLGVIPRAIHDIFQRIKKFPEREFLLRVSYMEIYNETITDLLCNTQkvKPLIIREDINRNVYV 164
Cdd:cd01374 79 YGQTSSGKTFTMSGDEDEPGIIPLAIRDIFSKIQDTPDREFLLRVSYLEIYNEKINDLLSPTS--QNLKIRDDVEKGVYV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 165 ADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREKAESsnCDGSIKVSHLNLVDLAGSERAAQ 244
Cdd:cd01374 157 AGLTEEIVSSPEHALSLIARGEKNRHVGETDMNERSSRSHTIFRITIESSERGEL--EEGTVRVSTLNLIDLAGSERAAQ 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 245 TGAEGMRLKEGCYINRNLLILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPAS--LDETLTTLQF 322
Cdd:cd01374 235 TGAAGVRRKEGSHINKSLLTLGTVISKLSEGKVGGHIPYRDSKLTRILQPSLGGNSRTAIICTITPAEshVEETLNTLKF 314
|
....*..
gi 1958755384 323 ASTAKYM 329
Cdd:cd01374 315 ASRAKKI 321
|
|
| KISc |
smart00129 |
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ... |
6-336 |
2.16e-140 |
|
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Pssm-ID: 214526 [Multi-domain] Cd Length: 335 Bit Score: 441.63 E-value: 2.16e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 6 AVAVCVRVRPLNSREEELGEASHIYW------KTDKNAIYQSDGGKSFQFDRVFHSNETTKNVYEEIAVPIISSAIQGYN 79
Cdd:smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFpdkvgkTLTVRSPKNRQGEKKFTFDKVFDATASQEDVFEETAAPLVDSVLEGYN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 80 GTIFAYGQTASGKTHTMMGSEDCLGVIPRAIHDIFQRIKKF-PEREFLLRVSYMEIYNETITDLLCNTQKvkPLIIREDI 158
Cdd:smart00129 81 ATIFAYGQTGSGKTYTMIGTPDSPGIIPRALKDLFEKIDKReEGWQFSVKVSYLEIYNEKIRDLLNPSSK--KLEIREDE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 159 NRNVYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREKAESSncdGSIKVSHLNLVDLAG 238
Cdd:smart00129 159 KGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNSSS---GSGKASKLNLVDLAG 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 239 SERAAQTGAEGMRLKEGCYINRNLLILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPA--SLDET 316
Cdd:smart00129 236 SERAKKTGAEGDRLKEAGNINKSLSALGNVINALAQHSKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANVSPSssNLEET 315
|
330 340
....*....|....*....|
gi 1958755384 317 LTTLQFASTAKYMKNTPYVN 336
Cdd:smart00129 316 LSTLRFASRAKEIKNKPIVN 335
|
|
| Kinesin |
pfam00225 |
Kinesin motor domain; |
12-327 |
2.57e-137 |
|
Kinesin motor domain;
Pssm-ID: 459720 [Multi-domain] Cd Length: 326 Bit Score: 432.38 E-value: 2.57e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 12 RVRPLNSREEELGEA------SHIYWKTDKNAIYQSDGGKSFQFDRVFHSNETTKNVYEEIAVPIISSAIQGYNGTIFAY 85
Cdd:pfam00225 1 RVRPLNEREKERGSSvivsveSVDSETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVTIFAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 86 GQTASGKTHTMMGSEDCLGVIPRAIHDIFQRIKKFPER-EFLLRVSYMEIYNETITDLLC-NTQKVKPLIIREDINRNVY 163
Cdd:pfam00225 81 GQTGSGKTYTMEGSDEQPGIIPRALEDLFDRIQKTKERsEFSVKVSYLEIYNEKIRDLLSpSNKNKRKLRIREDPKKGVY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 164 VADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREKAESSNcdGSIKVSHLNLVDLAGSERAA 243
Cdd:pfam00225 161 VKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRSTGGE--ESVKTGKLNLVDLAGSERAS 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 244 QTG-AEGMRLKEGCYINRNLLILGQVIKKLSDGQvGGFINYRDSKLTRILQNSLGGNAKTRIICTITPAS--LDETLTTL 320
Cdd:pfam00225 239 KTGaAGGQRLKEAANINKSLSALGNVISALADKK-SKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSsnYEETLSTL 317
|
....*..
gi 1958755384 321 QFASTAK 327
Cdd:pfam00225 318 RFASRAK 324
|
|
| KISc |
cd00106 |
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ... |
6-327 |
1.09e-134 |
|
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276812 [Multi-domain] Cd Length: 326 Bit Score: 424.75 E-value: 1.09e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 6 AVAVCVRVRPLNSREeelGEASHIYWKTDKNAIY-------QSDGGKSFQFDRVFHSNETTKNVYEEIAVPIISSAIQGY 78
Cdd:cd00106 1 NVRVAVRVRPLNGRE---ARSAKSVISVDGGKSVvldppknRVAPPKTFAFDAVFDSTSTQEEVYEGTAKPLVDSALEGY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 79 NGTIFAYGQTASGKTHTMMGSEDC-LGVIPRAIHDIFQRIKKFPE--REFLLRVSYMEIYNETITDLLCNTQKvKPLIIR 155
Cdd:cd00106 78 NGTIFAYGQTGSGKTYTMLGPDPEqRGIIPRALEDIFERIDKRKEtkSSFSVSASYLEIYNEKIYDLLSPVPK-KPLSLR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 156 EDINRNVYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREKaesSNCDGSIKVSHLNLVD 235
Cdd:cd00106 157 EDPKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHVKQRNR---EKSGESVTSSKLNLVD 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 236 LAGSERAAQTGAEGMRLKEGCYINRNLLILGQVIKKLSDGQvGGFINYRDSKLTRILQNSLGGNAKTRIICTITPAS--L 313
Cdd:cd00106 234 LAGSERAKKTGAEGDRLKEGGNINKSLSALGKVISALADGQ-NKHIPYRDSKLTRLLQDSLGGNSKTIMIACISPSSenF 312
|
330
....*....|....
gi 1958755384 314 DETLTTLQFASTAK 327
Cdd:cd00106 313 EETLSTLRFASRAK 326
|
|
| KISc_KIF3 |
cd01371 |
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ... |
6-327 |
3.11e-100 |
|
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276822 [Multi-domain] Cd Length: 334 Bit Score: 326.34 E-value: 3.11e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 6 AVAVCVRVRPLNSREEELGEASHIYWKTDKNAIYQSDGG-------KSFQFDRVFHSNETTKNVYEEIAVPIISSAIQGY 78
Cdd:cd01371 2 NVKVVVRCRPLNGKEKAAGALQIVDVDEKRGQVSVRNPKataneppKTFTFDAVFDPNSKQLDVYDETARPLVDSVLEGY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 79 NGTIFAYGQTASGKTHTMMG---SEDCLGVIPRAIHDIFQRIKKFPE-REFLLRVSYMEIYNETITDLLCNTQKvKPLII 154
Cdd:cd01371 82 NGTIFAYGQTGTGKTYTMEGkreDPELRGIIPNSFAHIFGHIARSQNnQQFLVRVSYLEIYNEEIRDLLGKDQT-KRLEL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 155 REDINRNVYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREKAEssncDGS--IKVSHLN 232
Cdd:cd01371 161 KERPDTGVYVKDLSMFVVKNADEMEHVMNLGNKNRSVGATNMNEDSSRSHAIFTITIECSEKGE----DGEnhIRVGKLN 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 233 LVDLAGSERAAQTGAEGMRLKEGCYINRNLLILGQVIKKLSDGQvGGFINYRDSKLTRILQNSLGGNAKTRIICTITPAS 312
Cdd:cd01371 237 LVDLAGSERQSKTGATGERLKEATKINLSLSALGNVISALVDGK-STHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPAD 315
|
330
....*....|....*..
gi 1958755384 313 --LDETLTTLQFASTAK 327
Cdd:cd01371 316 ynYDETLSTLRYANRAK 332
|
|
| KISc_KIF4 |
cd01372 |
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ... |
6-330 |
1.90e-99 |
|
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276823 [Multi-domain] Cd Length: 341 Bit Score: 324.28 E-value: 1.90e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 6 AVAVCVRVRPLNSREEELGeashiywktDKNAIYQSDGG--------KSFQFDRVFHSNETTKNVYEEIAVPIISSAIQG 77
Cdd:cd01372 2 SVRVAVRVRPLLPKEIIEG---------CRICVSFVPGEpqvtvgtdKSFTFDYVFDPSTEQEEVYNTCVAPLVDGLFEG 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 78 YNGTIFAYGQTASGKTHTMMGS------EDCLGVIPRAIHDIFQRI-KKFPEREFLLRVSYMEIYNETITDLLC-NTQKV 149
Cdd:cd01372 73 YNATVLAYGQTGSGKTYTMGTAytaeedEEQVGIIPRAIQHIFKKIeKKKDTFEFQLKVSFLEIYNEEIRDLLDpETDKK 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 150 KPLIIREDINRNVYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREK-----AESSNCDG 224
Cdd:cd01372 153 PTISIREDSKGGITIVGLTEVTVLSAEDMMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTKKngpiaPMSADDKN 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 225 SIKVSHLNLVDLAGSERAAQTGAEGMRLKEGCYINRNLLILGQVIKKLSDGQ-VGGFINYRDSKLTRILQNSLGGNAKTR 303
Cdd:cd01372 233 STFTSKFHFVDLAGSERLKRTGATGDRLKEGISINSGLLALGNVISALGDESkKGAHVPYRDSKLTRLLQDSLGGNSHTL 312
|
330 340
....*....|....*....|....*....
gi 1958755384 304 IICTITPAS--LDETLTTLQFASTAKYMK 330
Cdd:cd01372 313 MIACVSPADsnFEETLNTLKYANRARNIK 341
|
|
| KISc_KHC_KIF5 |
cd01369 |
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ... |
4-327 |
1.55e-98 |
|
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276820 [Multi-domain] Cd Length: 325 Bit Score: 321.20 E-value: 1.55e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 4 EAAVAVCVRVRPLNSREEELGEASHIYWKTDKN-AIYQSDGGKSFQFDRVFHSNETTKNVYEEIAVPIISSAIQGYNGTI 82
Cdd:cd01369 1 ECNIKVVCRFRPLNELEVLQGSKSIVKFDPEDTvVIATSETGKTFSFDRVFDPNTTQEDVYNFAAKPIVDDVLNGYNGTI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 83 FAYGQTASGKTHTMMGSEDC---LGVIPRAIHDIFQRIKKFPER-EFLLRVSYMEIYNETITDLLcNTQKvKPLIIREDI 158
Cdd:cd01369 81 FAYGQTSSGKTYTMEGKLGDpesMGIIPRIVQDIFETIYSMDENlEFHVKVSYFEIYMEKIRDLL-DVSK-TNLSVHEDK 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 159 NRNVYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESRekaesSNCDGSIKVSHLNLVDLAG 238
Cdd:cd01369 159 NRGPYVKGATERFVSSPEEVLDVIDEGKSNRHVAVTNMNEESSRSHSIFLINVKQE-----NVETEKKKSGKLYLVDLAG 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 239 SERAAQTGAEGMRLKEGCYINRNLLILGQVIKKLSDGQvGGFINYRDSKLTRILQNSLGGNAKTRIICTITPASLD--ET 316
Cdd:cd01369 234 SEKVSKTGAEGAVLDEAKKINKSLSALGNVINALTDGK-KTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNesET 312
|
330
....*....|.
gi 1958755384 317 LTTLQFASTAK 327
Cdd:cd01369 313 LSTLRFGQRAK 323
|
|
| KISc_KIF1A_KIF1B |
cd01365 |
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ... |
5-336 |
1.74e-98 |
|
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Pssm-ID: 276816 [Multi-domain] Cd Length: 361 Bit Score: 322.38 E-value: 1.74e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 5 AAVAVCVRVRPLNSREEELGEASHIYWK-----------TDKNAIYQSDGGKSFQFDRVFHSNE-------TTKNVYEEI 66
Cdd:cd01365 1 ANVKVAVRVRPFNSREKERNSKCIVQMSgkettlknpkqADKNNKATREVPKSFSFDYSYWSHDsedpnyaSQEQVYEDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 67 AVPIISSAIQGYNGTIFAYGQTASGKTHTMMGSEDCLGVIPRAIHDIFQRI--KKFPEREFLLRVSYMEIYNETITDLLC 144
Cdd:cd01365 81 GEELLQHAFEGYNVCLFAYGQTGSGKSYTMMGTQEQPGIIPRLCEDLFSRIadTTNQNMSYSVEVSYMEIYNEKVRDLLN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 145 NTQKVKP--LIIREDINRNVYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFrMILESREKAESSNC 222
Cdd:cd01365 161 PKPKKNKgnLKVREHPVLGPYVEDLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVF-TIVLTQKRHDAETN 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 223 DGSIKVSHLNLVDLAGSERAAQTGAEGMRLKEGCYINRNLLILGQVIKKLSDGQVGG------FINYRDSKLTRILQNSL 296
Cdd:cd01365 240 LTTEKVSKISLVDLAGSERASSTGATGDRLKEGANINKSLTTLGKVISALADMSSGKskkkssFIPYRDSVLTWLLKENL 319
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1958755384 297 GGNAKTRIICTITPASL--DETLTTLQFASTAKYMKNTPYVN 336
Cdd:cd01365 320 GGNSKTAMIAAISPADInyEETLSTLRYADRAKKIVNRAVVN 361
|
|
| KISc_KLP2_like |
cd01373 |
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ... |
6-339 |
8.10e-95 |
|
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276824 [Multi-domain] Cd Length: 347 Bit Score: 311.36 E-value: 8.10e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 6 AVAVCVRVRPLNSREEELGEASHIYWKTDKNAIYQSDGGKSFQFDRVFHSNETTKNVYEEIAVPIISSAIQGYNGTIFAY 85
Cdd:cd01373 2 AVKVFVRIRPPAEREGDGEYGQCLKKLSSDTLVLHSKPPKTFTFDHVADSNTNQESVFQSVGKPIVESCLSGYNGTIFAY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 86 GQTASGKTHTMMG---------SEDClGVIPRAIHDIFQRIKKFPER-----EFLLRVSYMEIYNETITDLLCNTQkvKP 151
Cdd:cd01373 82 GQTGSGKTYTMWGpsesdnespHGLR-GVIPRIFEYLFSLIQREKEKagegkSFLCKCSFLEIYNEQIYDLLDPAS--RN 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 152 LIIREDINRNVYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREKaesSNCDGSIKVSHL 231
Cdd:cd01373 159 LKLREDIKKGVYVENLVEEYVTSAEDVYQVLSKGWSNRKVAATSMNRESSRSHAVFTCTIESWEK---KACFVNIRTSRL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 232 NLVDLAGSERAAQTGAEGMRLKEGCYINRNLLILGQVIKKLSDGQVGGF--INYRDSKLTRILQNSLGGNAKTRIICTIT 309
Cdd:cd01373 236 NLVDLAGSERQKDTHAEGVRLKEAGNINKSLSCLGHVINALVDVAHGKQrhVCYRDSKLTFLLRDSLGGNAKTAIIANVH 315
|
330 340 350
....*....|....*....|....*....|..
gi 1958755384 310 PASLD--ETLTTLQFASTAKYMKNTPYVNEVS 339
Cdd:cd01373 316 PSSKCfgETLSTLRFAQRAKLIKNKAVVNEDT 347
|
|
| KISc_C_terminal |
cd01366 |
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ... |
12-324 |
2.65e-94 |
|
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276817 [Multi-domain] Cd Length: 329 Bit Score: 309.14 E-value: 2.65e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 12 RVRPLNSrEEELGEASHI-YWKTDKNAIYQSDGG---KSFQFDRVFHSNETTKNVYEEIAvPIISSAIQGYNGTIFAYGQ 87
Cdd:cd01366 9 RVRPLLP-SEENEDTSHItFPDEDGQTIELTSIGakqKEFSFDKVFDPEASQEDVFEEVS-PLVQSALDGYNVCIFAYGQ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 88 TASGKTHTMMGSEDCLGVIPRAIHDIFQRIKKFPER--EFLLRVSYMEIYNETITDLLC-NTQKVKPLIIRED-INRNVY 163
Cdd:cd01366 87 TGSGKTYTMEGPPESPGIIPRALQELFNTIKELKEKgwSYTIKASMLEIYNETIRDLLApGNAPQKKLEIRHDsEKGDTT 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 164 VADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREKAESSNCDGSikvshLNLVDLAGSERAA 243
Cdd:cd01366 167 VTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISGRNLQTGEISVGK-----LNLVDLAGSERLN 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 244 QTGAEGMRLKEGCYINRNLLILGQVIKKLSDGQvgGFINYRDSKLTRILQNSLGGNAKTRIICTITPA--SLDETLTTLQ 321
Cdd:cd01366 242 KSGATGDRLKETQAINKSLSALGDVISALRQKQ--SHIPYRNSKLTYLLQDSLGGNSKTLMFVNISPAesNLNETLNSLR 319
|
...
gi 1958755384 322 FAS 324
Cdd:cd01366 320 FAS 322
|
|
| KISc_KIP3_like |
cd01370 |
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ... |
9-327 |
3.58e-92 |
|
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276821 [Multi-domain] Cd Length: 345 Bit Score: 303.50 E-value: 3.58e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 9 VCVRVRPLNSREEELG---------------------EASHIYWKTDKNAIYQSDGGKSFQFDRVFHSNETTKNVYEEIA 67
Cdd:cd01370 4 VAVRVRPFSEKEKNEGfrrivkvmdnhmlvfdpkdeeDGFFHGGSNNRDRRKRRNKELKYVFDRVFDETSTQEEVYEETT 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 68 VPIISSAIQGYNGTIFAYGQTASGKTHTMMGSEDCLGVIPRAIHDIFQRIKKF-PEREFLLRVSYMEIYNETITDLLCNT 146
Cdd:cd01370 84 KPLVDGVLNGYNATVFAYGATGAGKTHTMLGTPQEPGLMVLTMKELFKRIESLkDEKEFEVSMSYLEIYNETIRDLLNPS 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 147 QkvKPLIIREDINRNVYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREKAESSNCDgsI 226
Cdd:cd01370 164 S--GPLELREDAQNGIVVAGLTEHSPKSAEEILELLMKGNRNRTQEPTDANATSSRSHAVLQITVRQQDKTASINQQ--V 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 227 KVSHLNLVDLAGSERAAQTGAEGMRLKEGCYINRNLLILGQVIKKLSD-GQVGGFINYRDSKLTRILQNSLGGNAKTRII 305
Cdd:cd01370 240 RQGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALADpGKKNKHIPYRDSKLTRLLKDSLGGNCRTVMI 319
|
330 340
....*....|....*....|....
gi 1958755384 306 CTITPASL--DETLTTLQFASTAK 327
Cdd:cd01370 320 ANISPSSSsyEETHNTLKYANRAK 343
|
|
| KISc_BimC_Eg5 |
cd01364 |
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ... |
7-337 |
6.46e-88 |
|
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276815 [Multi-domain] Cd Length: 353 Bit Score: 291.54 E-value: 6.46e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 7 VAVCVRVRPLNSREEELGEASHIYWKTDKNAIYQSDGG-------KSFQFDRVFHSNETTKNVYEEIAVPIISSAIQGYN 79
Cdd:cd01364 4 IQVVVRCRPFNLRERKASSHSVVEVDPVRKEVSVRTGGladksstKTYTFDMVFGPEAKQIDVYRSVVCPILDEVLMGYN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 80 GTIFAYGQTASGKTHTMMGSE-----------DCLGVIPRAIHDIFQRIKKfPEREFLLRVSYMEIYNETITDLL-CNTQ 147
Cdd:cd01364 84 CTIFAYGQTGTGKTYTMEGDRspneeytweldPLAGIIPRTLHQLFEKLED-NGTEYSVKVSYLEIYNEELFDLLsPSSD 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 148 KVKPLIIREDINR--NVYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREKaeSSNCDGS 225
Cdd:cd01364 163 VSERLRMFDDPRNkrGVIIKGLEEITVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSVFSITIHIKET--TIDGEEL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 226 IKVSHLNLVDLAGSERAAQTGAEGMRLKEGCYINRNLLILGQVIKKLSDGqvGGFINYRDSKLTRILQNSLGGNAKTRII 305
Cdd:cd01364 241 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER--APHVPYRESKLTRLLQDSLGGRTKTSII 318
|
330 340 350
....*....|....*....|....*....|....
gi 1958755384 306 CTITPAS--LDETLTTLQFASTAKYMKNTPYVNE 337
Cdd:cd01364 319 ATISPASvnLEETLSTLEYAHRAKNIKNKPEVNQ 352
|
|
| KISc_KIF9_like |
cd01375 |
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ... |
6-327 |
7.65e-76 |
|
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276826 [Multi-domain] Cd Length: 334 Bit Score: 255.97 E-value: 7.65e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 6 AVAVCVRVRPLNSREEE---LGE-----ASHIYWKTDKNAIYQSDGGKSFQFDRVFHsNETTKNVYEEIAVPIISSAIQG 77
Cdd:cd01375 1 KVQAFVRVRPTDDFAHEmikYGEdgksiSIHLKKDLRRGVVNNQQEDWSFKFDGVLH-NASQELVYETVAKDVVSSALAG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 78 YNGTIFAYGQTASGKTHTMMGSEDCL---GVIPRAIHDIFQRIKKFPEREFLLRVSYMEIYNETITDLLCNT----QKVK 150
Cdd:cd01375 80 YNGTIFAYGQTGAGKTFTMTGGTENYkhrGIIPRALQQVFRMIEERPTKAYTVHVSYLEIYNEQLYDLLSTLpyvgPSVT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 151 PLIIREDINRNVYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREKAESSNcdgSIKVSH 230
Cdd:cd01375 160 PMTILEDSPQNIFIKGLSLHLTSQEEEALSLLFLGETNRIIASHTMNKNSSRSHCIFTIHLEAHSRTLSSE---KYITSK 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 231 LNLVDLAGSERAAQTGAEGMRLKEGCYINRNLLILGQVIKKLSDgQVGGFINYRDSKLTRILQNSLGGNAKTRIICTIT- 309
Cdd:cd01375 237 LNLVDLAGSERLSKTGVEGQVLKEATYINKSLSFLEQAIIALSD-KDRTHVPFRQSKLTHVLRDSLGGNCNTVMVANIYg 315
|
330
....*....|....*....
gi 1958755384 310 -PASLDETLTTLQFASTAK 327
Cdd:cd01375 316 eAAQLEETLSTLRFASRVK 334
|
|
| KISc_KIF23_like |
cd01368 |
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ... |
7-327 |
4.91e-75 |
|
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276819 [Multi-domain] Cd Length: 345 Bit Score: 254.24 E-value: 4.91e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 7 VAVCVRVRPLNSREEELGEASHI-----------------YWKTDKNAIYQSdggKSFQFDRVFHSNETTKNVYEEIAVP 69
Cdd:cd01368 3 VKVYLRVRPLSKDELESEDEGCIevinsttvvlhppkgsaANKSERNGGQKE---TKFSFSKVFGPNTTQKEFFQGTALP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 70 IISSAIQGYNGTIFAYGQTASGKTHTMMGSEDCLGVIPRAIHDIFQRIKkfperEFLLRVSYMEIYNETITDLL-----C 144
Cdd:cd01368 80 LVQDLLHGKNGLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIG-----GYSVFVSYIEIYNEYIYDLLepspsS 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 145 NTQKVKPLIIREDINRNVYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMIL---ESREKAESSN 221
Cdd:cd01368 155 PTKKRQSLRLREDHNGNMYVAGLTEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFTIKLvqaPGDSDGDVDQ 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 222 CDGSIKVSHLNLVDLAGSERAAQTGAEGMRLKEGCYINRNLLILGQVIKKLSDGQVGGFIN---YRDSKLTRILQNSLGG 298
Cdd:cd01368 235 DKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGTCIEVLRENQLQGTNKmvpFRDSKLTHLFQNYFDG 314
|
330 340 350
....*....|....*....|....*....|.
gi 1958755384 299 NAKTRIICTITPASL--DETLTTLQFASTAK 327
Cdd:cd01368 315 EGKASMIVNVNPCASdyDETLHVMKFSAIAQ 345
|
|
| KIP1 |
COG5059 |
Kinesin-like protein [Cytoskeleton]; |
21-425 |
1.27e-67 |
|
Kinesin-like protein [Cytoskeleton];
Pssm-ID: 227392 [Multi-domain] Cd Length: 568 Bit Score: 240.41 E-value: 1.27e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 21 EELGEASHIYWKTDKNAI--YQSDGGKSFQFDRVFHSNETTKNVYEEIAVPIISSAIQGYNGTIFAYGQTASGKTHTMMG 98
Cdd:COG5059 30 IIPGELGERLINTSKKSHvsLEKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSG 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 99 SEDCLGVIPRAIHDIFQRIKKFP-EREFLLRVSYMEIYNETITDLL-CNTQKvkpLIIREDINRNVYVADLTEEVVYTAE 176
Cdd:COG5059 110 TEEEPGIIPLSLKELFSKLEDLSmTKDFAVSISYLEIYNEKIYDLLsPNEES---LNIREDSLLGVKVAGLTEKHVSSKE 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 177 MALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREKAESSNCDGSikvshLNLVDLAGSERAAQTGAEGMRLKEGC 256
Cdd:COG5059 187 EILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSK-----LSLVDLAGSERAARTGNRGTRLKEGA 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 257 YINRNLLILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPAS--LDETLTTLQFASTAKYMKNTPY 334
Cdd:COG5059 262 SINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSnsFEETINTLKFASRAKSIKNKIQ 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 335 VNEVSNDEALLKRYRREIVDLKKQleevNTKTRAQEIEKDQLAQLLDEKDLLQKVQDEKIQNLKRMLVTSSSIALQQELE 414
Cdd:COG5059 342 VNSSSDSSREIEEIKFDLSEDRSE----IEILVFREQSQLSQSSLSGIFAYMQSLKKETETLKSRIDLIMKSIISGTFER 417
|
410
....*....|.
gi 1958755384 415 IKKKRRVTWCF 425
Cdd:COG5059 418 KKLLKEEGWKY 428
|
|
| KISc_KID_like |
cd01376 |
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ... |
7-327 |
9.35e-66 |
|
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276827 [Multi-domain] Cd Length: 319 Bit Score: 226.62 E-value: 9.35e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 7 VAVCVRVRPLNSREEELGEASHIYWkTDKNAIYQSDG-----GKSFQFDRVFHSNETTKNVYEEIAVPIISSAIQGYNGT 81
Cdd:cd01376 2 VRVAVRVRPFVDGTAGASDPSCVSG-IDSCSVELADPrnhgeTLKYQFDAFYGEESTQEDIYAREVQPIVPHLLEGQNAT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 82 IFAYGQTASGKTHTMMGSEDCLGVIPRAIHDIFQRIKKFPEREFLLrVSYMEIYNETITDLLcnTQKVKPLIIREDINRN 161
Cdd:cd01376 81 VFAYGSTGAGKTFTMLGSPEQPGLMPLTVMDLLQMTRKEAWALSFT-MSYLEIYQEKILDLL--EPASKELVIREDKDGN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 162 VYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREkaesSNCDGSIKVSHLNLVDLAGSER 241
Cdd:cd01376 158 ILIPGLSSKPIKSMAEFEEAFLPASKNRTVAATRLNDNSSRSHAVLLIKVDQRE----RLAPFRQRTGKLNLIDLAGSED 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 242 AAQTGAEGMRLKEGCYINRNLLILGQVIKKLSDGQvgGFINYRDSKLTRILQNSLGGNAKTRIICTITP--ASLDETLTT 319
Cdd:cd01376 234 NRRTGNEGIRLKESGAINSSLFVLSKVVNALNKNL--PRIPYRDSKLTRLLQDSLGGGSRCIMVANIAPerTFYQDTLST 311
|
....*...
gi 1958755384 320 LQFASTAK 327
Cdd:cd01376 312 LNFAARSR 319
|
|
| KISc_KIF2_like |
cd01367 |
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ... |
9-327 |
1.36e-62 |
|
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276818 [Multi-domain] Cd Length: 328 Bit Score: 217.55 E-value: 1.36e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 9 VCVRVRPLNSREEELGEaSHIYWKTDKNAIY------QSDGGK-----SFQFDRVFHSNETTKNVYEEIAVPIISSAIQG 77
Cdd:cd01367 4 VCVRKRPLNKKEVAKKE-IDVVSVPSKLTLIvhepklKVDLTKyienhTFRFDYVFDESSSNETVYRSTVKPLVPHIFEG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 78 YNGTIFAYGQTASGKTHTMMGS----EDCLGVIPRAIHDIFQRIKKFPEREFL-LRVSYMEIYNETITDLLCNTQKVKpl 152
Cdd:cd01367 83 GKATCFAYGQTGSGKTYTMGGDfsgqEESKGIYALAARDVFRLLNKLPYKDNLgVTVSFFEIYGGKVFDLLNRKKRVR-- 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 153 iIREDINRNVYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREKAESSncdGSikvshLN 232
Cdd:cd01367 161 -LREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGTNKLH---GK-----LS 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 233 LVDLAGSERAAQTGAEG-MRLKEGCYINRNLLILGQVIKKLSDGQVggFINYRDSKLTRILQNSL-GGNAKTRIICTITP 310
Cdd:cd01367 232 FVDLAGSERGADTSSADrQTRMEGAEINKSLLALKECIRALGQNKA--HIPFRGSKLTQVLKDSFiGENSKTCMIATISP 309
|
330
....*....|....*....
gi 1958755384 311 A--SLDETLTTLQFASTAK 327
Cdd:cd01367 310 GasSCEHTLNTLRYADRVK 328
|
|
| PLN03188 |
PLN03188 |
kinesin-12 family protein; Provisional |
4-362 |
4.58e-62 |
|
kinesin-12 family protein; Provisional
Pssm-ID: 215621 [Multi-domain] Cd Length: 1320 Bit Score: 235.21 E-value: 4.58e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 4 EAAVAVCVRVRPLNSREEElgeaSHIYWKTDKNAIyqSDGGKSFQFDRVFHSNETTKNVYEEIAVPIISSAIQGYNGTIF 83
Cdd:PLN03188 97 DSGVKVIVRMKPLNKGEEG----EMIVQKMSNDSL--TINGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVF 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 84 AYGQTASGKTHTMMG----------SEDCLGVIPRAIHDIFQRIK----KFPERE--FLLRVSYMEIYNETITDLLCNTQ 147
Cdd:PLN03188 171 AYGQTGSGKTYTMWGpanglleehlSGDQQGLTPRVFERLFARINeeqiKHADRQlkYQCRCSFLEIYNEQITDLLDPSQ 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 148 KvkPLIIREDINRNVYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREKaesSNCDG--S 225
Cdd:PLN03188 251 K--NLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCK---SVADGlsS 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 226 IKVSHLNLVDLAGSERAAQTGAEGMRLKEGCYINRNLLILGQVIKKLSD-GQVGG--FINYRDSKLTRILQNSLGGNAKT 302
Cdd:PLN03188 326 FKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEiSQTGKqrHIPYRDSRLTFLLQESLGGNAKL 405
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958755384 303 RIICTITPAS--LDETLTTLQFASTAKYMKNTPYVNEVSNDEalLKRYRREIVDLKKQLEEV 362
Cdd:PLN03188 406 AMVCAISPSQscKSETFSTLRFAQRAKAIKNKAVVNEVMQDD--VNFLREVIRQLRDELQRV 465
|
|
| Motor_domain |
cd01363 |
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ... |
9-269 |
1.37e-24 |
|
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.
Pssm-ID: 276814 [Multi-domain] Cd Length: 170 Bit Score: 102.42 E-value: 1.37e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 9 VCVRVRPLNSREeelgeashiywktdknaIYQSDggKSFQFDRVFHSNETTKNVYEeIAVPIISSAIQGYNG-TIFAYGQ 87
Cdd:cd01363 1 VLVRVNPFKELP-----------------IYRDS--KIIVFYRGFRRSESQPHVFA-IADPAYQSMLDGYNNqSIFAYGE 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 88 TASGKTHTMMgsedclGVIPRAIHDIFQRIKKfperefllrvsymeiynetitdllcntqkvkpliirediNRNVYVADL 167
Cdd:cd01363 61 SGAGKTETMK------GVIPYLASVAFNGINK---------------------------------------GETEGWVYL 95
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 168 TEEVVYTAEMALKWLATGEKNRHyGITKMNQRSSRSHTIFRMilesrekaessncdgsikvshlnLVDLAGSERaaqtga 247
Cdd:cd01363 96 TEITVTLEDQILQANPILEAFGN-AKTTRNENSSRFGKFIEI-----------------------LLDIAGFEI------ 145
|
250 260
....*....|....*....|..
gi 1958755384 248 egmrlkegcyINRNLLILGQVI 269
Cdd:cd01363 146 ----------INESLNTLMNVL 157
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1038-1815 |
1.68e-24 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 112.84 E-value: 1.68e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1038 ELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAkvtDLENLQN 1117
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQ---QKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1118 EFRNQALALERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLK 1197
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1198 EYQEIIKELRGSISEKEAQASSTQDTgktnpasqgetpVPREQELLPDAEEARASAEKGSELEPVEEHSRTAHSLTTEGI 1277
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEDR------------RERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1278 EMEilaltKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARR-----------------------TLANHLETE 1334
Cdd:TIGR02168 458 RLE-----EALEELREELEEAEQALDAAERELAQLQARLDSLERLQENlegfsegvkallknqsglsgilgVLSELISVD 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1335 EELSLA---------RCCLKEQENKIDSLIVSLSQKEA------ELSSVRVQLEVTTGELERKVQELCEKQEQLNIKETS 1399
Cdd:TIGR02168 533 EGYEAAieaalggrlQAVVVENLNAAKKAIAFLKQNELgrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDP 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1400 EVQGKMSE-LDHI------------------RALLLTKD------------------SALQSVESDRLRLNKQLEESQEE 1442
Cdd:TIGR02168 613 KLRKALSYlLGGVlvvddldnalelakklrpGYRIVTLDgdlvrpggvitggsaktnSSILERRREIEELEEKIEELEEK 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1443 IKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQdKEYEYLvmkslnETQGNKCEDLNQQLEAQKSSLEKVEMQ 1522
Cdd:TIGR02168 693 IAELEKALAELRKELEELEEELEQLRKELEELSRQISALR-KDLARL------EAEVEQLEERIAQLSKELTELEAEIEE 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1523 nvnLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQLSQVKADLRETMD----QMEQ 1598
Cdd:TIGR02168 766 ---LEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAaterRLED 842
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1599 LKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRiahl 1678
Cdd:TIGR02168 843 LEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELE---- 918
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1679 dlkehqetierlmgsvaKRTEEVSDMNMELERANTR---LQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEM 1755
Cdd:TIGR02168 919 -----------------ELREKLAQLELRLEGLEVRidnLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958755384 1756 ENL---NLAQqihqnLEEMKSISKERDDLKRMEEILRMEKDQLKDSLREAKFKAHQNYEETVQ 1815
Cdd:TIGR02168 982 KELgpvNLAA-----IEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFD 1039
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
837-1700 |
7.64e-24 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 110.53 E-value: 7.64e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 837 QEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTlEEVRALtqeKNDLKQLQESLQTERdqlrsdiqdtvnmnidt 916
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSLERQAEKA-ERYKEL---KAELRELELALLVLR----------------- 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 917 qeqllnaLESLKQHQETINMLKMKATEEMSDHlpikgrEGSSDEVEQKLDGIDEENLLAESAhtvvgsgedhgETEEQRK 996
Cdd:TIGR02168 234 -------LEELREELEELQEELKEAEEELEEL------TAELQELEEKLEELRLEVSELEEE-----------IEELQKE 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 997 IDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAE 1076
Cdd:TIGR02168 290 LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1077 IEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLENLQN--EFRNQALALERVETERLELAQKLHENYEKMESITKER 1154
Cdd:TIGR02168 370 LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLErlEDRRERLQQEIEELLKKLEEAELKELQAELEELEEEL 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1155 NDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRG-SISEKEAQASSTQDTGKTNPASQG- 1232
Cdd:TIGR02168 450 EELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGfSEGVKALLKNQSGLSGILGVLSELi 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1233 ------ETPV-----PREQELLPDAEEARASAEkgSELEPVEEHSRTAHSLTTEG---IEMEILALTKKLEESQKEISCL 1298
Cdd:TIGR02168 530 svdegyEAAIeaalgGRLQAVVVENLNAAKKAI--AFLKQNELGRVTFLPLDSIKgteIQGNDREILKNIEGFLGVAKDL 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1299 TKERSDLRRTQEAL--QVECAQLKDDARRtLANHLETEE-------ELSLARCCLKEQENKIDSLIVSLSQKEAELSSVR 1369
Cdd:TIGR02168 608 VKFDPKLRKALSYLlgGVLVVDDLDNALE-LAKKLRPGYrivtldgDLVRPGGVITGGSAKTNSSILERRREIEELEEKI 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1370 VQLEVTTGELERKVQELCEKQEQLNIKET---SEVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEIKIL 1446
Cdd:TIGR02168 687 EELEEKIAELEKALAELRKELEELEEELEqlrKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEL 766
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1447 IKEREELRRAQEALHVEREQQQESIKEISTRLQ----ELQDKEYEYlvmKSLNETQGNKCEDLnQQLEAQKSSLEKvemQ 1522
Cdd:TIGR02168 767 EERLEEAEEELAEAEAEIEELEAQIEQLKEELKalreALDELRAEL---TLLNEEAANLRERL-ESLERRIAATER---R 839
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1523 NVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETI----TKNQELQEKGHQLSQVKADLRETMDQMEQ 1598
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEealaLLRSELEELSEELRELESKRSELRRELEE 919
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1599 LKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKIMDEA-LREERDQLRESLRQTEASDLE-----KQEK 1672
Cdd:TIGR02168 920 LREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEeARRRLKRLENKIKELGPVNLAaieeyEELK 999
|
890 900 910
....*....|....*....|....*....|...
gi 1958755384 1673 LRIAHL-----DLKEHQETIERLMGSVAKRTEE 1700
Cdd:TIGR02168 1000 ERYDFLtaqkeDLTEAKETLEEAIEEIDREARE 1032
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
807-1631 |
1.69e-23 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 109.38 E-value: 1.69e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 807 RQEEVLEESERVKQEL---SQKTQELAQKTAEGQEM-----LNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEV 878
Cdd:TIGR02168 190 RLEDILNELERQLKSLerqAEKAERYKELKAELRELelallVLRLEELREELEELQEELKEAEEELEELTAELQELEEKL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 879 RALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKMKATEEMSDHLPIKGREGS- 957
Cdd:TIGR02168 270 EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEl 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 958 SDEVEQKLDGIDEENLLAESAHTVVGSGEDHGETEeQRKIDSLLQENSRLQQTLESIIAEKEQLKmdlkENIEMSVENQE 1037
Cdd:TIGR02168 350 KEELESLEAELEELEAELEELESRLEELEEQLETL-RSKVAQLELQIASLNNEIERLEARLERLE----DRRERLQQEIE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1038 ELRILRDELKRQqEIAAQekdhVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLENLQN 1117
Cdd:TIGR02168 425 ELLKKLEEAELK-ELQAE----LEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1118 EFRNQALALERVETERLELAQklhenyekmesitkernDLKELQESFEIEKKqlkeYAREMESA---GLQtkeqlNIAHA 1194
Cdd:TIGR02168 500 NLEGFSEGVKALLKNQSGLSG-----------------ILGVLSELISVDEG----YEAAIEAAlggRLQ-----AVVVE 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1195 NLKEYQEIIKELRGSISEKEAQASSTQDTGKTNPASQGETP--VPREQELLPDAEEARASAEKGseLEPVEEHSRTAHSL 1272
Cdd:TIGR02168 554 NLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILknIEGFLGVAKDLVKFDPKLRKA--LSYLLGGVLVVDDL 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1273 TT--------------------------------EGIEMEILALTKKLEESQKEI-------SCLTKERSDLRRTQEALQ 1313
Cdd:TIGR02168 632 DNalelakklrpgyrivtldgdlvrpggvitggsAKTNSSILERRREIEELEEKIeeleekiAELEKALAELRKELEELE 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1314 VECAQLKDDARRTLANHLETEEELSLARC---CLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCEKQ 1390
Cdd:TIGR02168 712 EELEQLRKELEELSRQISALRKDLARLEAeveQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1391 EQLNI---KETSEVQGKMSELDHIRALLLTKDSALQSVESDRL-------RLNKQLEESQEEIKILIKEREELRRAQEAL 1460
Cdd:TIGR02168 792 EQLKEelkALREALDELRAELTLLNEEAANLRERLESLERRIAaterrleDLEEQIEELSEDIESLAAEIEELEELIEEL 871
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1461 HVEREQQQESIKEISTRLQELQDKEYEylVMKSLNETQGN------KCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNE-- 1532
Cdd:TIGR02168 872 ESELEALLNERASLEEALALLRSELEE--LSEELRELESKrselrrELEELREKLAQLELRLEGLEVRIDNLQERLSEey 949
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1533 --TLEEMKSVAKERD-ELRSVEERLtadrDQLKKSLEE-------TITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQ 1602
Cdd:TIGR02168 950 slTLEEAEALENKIEdDEEEARRRL----KRLENKIKElgpvnlaAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEE 1025
|
890 900 910
....*....|....*....|....*....|
gi 1958755384 1603 LEAqnstlesIEIEKLKLT-QQLNENLKEM 1631
Cdd:TIGR02168 1026 IDR-------EARERFKDTfDQVNENFQRV 1048
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
553-1354 |
6.50e-23 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 107.45 E-value: 6.50e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 553 NELSSKVELLKEkedQIKELQRYIDaQKSETTKTDLSYSseaTEDLKQAMRTLSDLDTVALDAKRESAFLRSENLELKER 632
Cdd:TIGR02168 196 NELERQLKSLER---QAEKAERYKE-LKAELRELELALL---VLRLEELREELEELQEELKEAEEELEELTAELQELEEK 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 633 INELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSALVDGKGlLSNLELEKRITDLQKELNKEVEEKE 712
Cdd:TIGR02168 269 LEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE-AQLEELESKLDELAEELAELEEKLE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 713 TLQKEVHLLSELKslpSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQlsQRSSDE 792
Cdd:TIGR02168 348 ELKEELESLEAEL---EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR--ERLQQE 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 793 ECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQ 872
Cdd:TIGR02168 423 IEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 873 QTLEEVRALTQEKNDLK----QLQESLQTERD-------QLRSDIQDTVnmnIDTQEQLLNALESLKQHqetinmLKMKA 941
Cdd:TIGR02168 503 GFSEGVKALLKNQSGLSgilgVLSELISVDEGyeaaieaALGGRLQAVV---VENLNAAKKAIAFLKQN------ELGRV 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 942 TEEMSDHLPIKGREGSSDEVEQKLDGideenllaesahtVVGSGEDHGETEEqrKIDSLLqeNSRLQQTLesiIAEkeql 1021
Cdd:TIGR02168 574 TFLPLDSIKGTEIQGNDREILKNIEG-------------FLGVAKDLVKFDP--KLRKAL--SYLLGGVL---VVD---- 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1022 kmDLKENIEMSVENQEELRILRDE---------------------LKRQQEIA------AQEKDHVTEKSEELSRAHERL 1074
Cdd:TIGR02168 630 --DLDNALELAKKLRPGYRIVTLDgdlvrpggvitggsaktnssiLERRREIEeleekiEELEEKIAELEKALAELRKEL 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1075 AEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVtdlENLQNEFRNQALALERVETERLELAQKLHENYEKMESITKER 1154
Cdd:TIGR02168 708 EELEEELEQLRKELEELSRQISALRKDLARLEAEV---EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1155 NDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKTNPASQGEt 1234
Cdd:TIGR02168 785 EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE- 863
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1235 pvprEQELLPDAEEARASAEKgsELEPVEEHSRTAHSLTTEGIEmEILALTKKLEESQKEISCLTKERSDLRRTQEALQV 1314
Cdd:TIGR02168 864 ----LEELIEELESELEALLN--ERASLEEALALLRSELEELSE-ELRELESKRSELRRELEELREKLAQLELRLEGLEV 936
|
810 820 830 840
....*....|....*....|....*....|....*....|....*...
gi 1958755384 1315 ECAQLKD----DARRTL----ANHLETEEELSLARCCLKEQENKIDSL 1354
Cdd:TIGR02168 937 RIDNLQErlseEYSLTLeeaeALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
695-1571 |
5.91e-22 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 104.37 E-value: 5.91e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 695 KRITDLQKELNKEVEekeTLQKEVHLLSELKSLPSEVETLRR-----ELHEKSEELCVITTEREKLFSEMAHKDSRIQGL 769
Cdd:TIGR02168 189 DRLEDILNELERQLK---SLERQAEKAERYKELKAELRELELallvlRLEELREELEELQEELKEAEEELEELTAELQEL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 770 LEEIgntkddlAASQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREK 849
Cdd:TIGR02168 266 EEKL-------EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 850 LERRdsslqsaEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNmnidTQEQLLNALESLKQ 929
Cdd:TIGR02168 339 LAEL-------EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL----QIASLNNEIERLEA 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 930 HQETINMLKMKATEEMSDHLPiKGREGSSDEVEQKLDGIDEEnllaesahtvvgsgedhgeteeqrkIDSLLQENSRLQQ 1009
Cdd:TIGR02168 408 RLERLEDRRERLQQEIEELLK-KLEEAELKELQAELEELEEE-------------------------LEELQEELERLEE 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1010 TLESI---IAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERL-------AEIEE 1079
Cdd:TIGR02168 462 ALEELreeLEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELIsvdegyeAAIEA 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1080 KLKEKNQKL-QETQQQLVSIQEAMSE----------------MQAKVTDLENLQNEFRNQALALERVET-ERLELA-QKL 1140
Cdd:TIGR02168 542 ALGGRLQAVvVENLNAAKKAIAFLKQnelgrvtflpldsikgTEIQGNDREILKNIEGFLGVAKDLVKFdPKLRKAlSYL 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1141 HENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAH--ANLKEYQEIIKELRGSISEKEAQAS 1218
Cdd:TIGR02168 622 LGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILErrREIEELEEKIEELEEKIAELEKALA 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1219 STQDTgKTNPASQGETPVPREQELLPDAEEARASAEKGSELEPVEEHSRTAHSLTTEGIEMEILALTKKLEESQKEISCL 1298
Cdd:TIGR02168 702 ELRKE-LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA 780
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1299 TKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGE 1378
Cdd:TIGR02168 781 EAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE 860
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1379 LERKVQELCEKQEQLNIKeTSEVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEIkilikerEELRRAQE 1458
Cdd:TIGR02168 861 IEELEELIEELESELEAL-LNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKL-------AQLELRLE 932
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1459 ALHVEREQQQESIKEISTRLQELQDKEYEYLVMKSlnetqgnkcEDLNQQLEAQKSSLEkvEMQNVNLTqrlneTLEEMK 1538
Cdd:TIGR02168 933 GLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDE---------EEARRRLKRLENKIK--ELGPVNLA-----AIEEYE 996
|
890 900 910
....*....|....*....|....*....|...
gi 1958755384 1539 SVAKERDELRSVEErltaDRDQLKKSLEETITK 1571
Cdd:TIGR02168 997 ELKERYDFLTAQKE----DLTEAKETLEEAIEE 1025
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
959-1577 |
7.52e-22 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 103.86 E-value: 7.52e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 959 DEVEQKLDGIDEENLLAESAHTVVGSGEDHGETEEQRKIDSLLQENSRL---QQTLESIIAEKEQLKMDLKENIEMSVEN 1035
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELeeaQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1036 QEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLENL 1115
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1116 QNEFRNQALALERVETERLELAQKLHENyekMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHAN 1195
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEE---LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1196 LKEYQEIIKELRGSISEKEAQASSTQDTGKtnpASQGETPVPREQELLPDaeeARASAEKGSELEPVEEHSRTAhsLTTE 1275
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEA---DYEGFLEGVKAALLLAG---LRGLAGAVAVLIGVEAAYEAA--LEAA 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1276 GIEMEILALTKKLEESQKEISCLtKERSDLRRTQEALQVECA-QLKDDARRTLANHLETEEELSLARCCLKEQENKIDSL 1354
Cdd:COG1196 544 LAAALQNIVVEDDEVAAAAIEYL-KAAKAGRATFLPLDKIRArAALAAALARGAIGAAVDLVASDLREADARYYVLGDTL 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1355 IVSLSQKEAELSSVRvqLEVTTGELERKVQELCEKQEQLNIKETSEVQGKMSELDHIRALLLTKDSALQSVESDRLRLNK 1434
Cdd:COG1196 623 LGRTLVAARLEAALR--RAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALL 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1435 QLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEYLVMKSLNEtqgnkcEDLNQQLEAQKS 1514
Cdd:COG1196 701 AEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL------EELERELERLER 774
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958755384 1515 SLEkvEMQNVNLT---------QRLNETLEEMKSVAKERDELRSVEERLTAD-RDQLKKSLEETitkNQELQE 1577
Cdd:COG1196 775 EIE--ALGPVNLLaieeyeeleERYDFLSEQREDLEEARETLEEAIEEIDREtRERFLETFDAV---NENFQE 842
|
|
| Microtub_bd |
pfam16796 |
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ... |
9-143 |
2.23e-20 |
|
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.
Pssm-ID: 465274 [Multi-domain] Cd Length: 144 Bit Score: 89.59 E-value: 2.23e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 9 VCVRVRPLNSREEEL---GEASHIYWKTDKNaiyqsdggKSFQFDRVFHSNETTKNVYEEIAVpIISSAIQGYNGTIFAY 85
Cdd:pfam16796 24 VFARVRPELLSEAQIdypDETSSDGKIGSKN--------KSFSFDRVFPPESEQEDVFQEISQ-LVQSCLDGYNVCIFAY 94
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958755384 86 GQTASGKTHTMmgsedclgvIPRAIHDIFQRIKKF-PEREFLLRVSYMEIYNETITDLL 143
Cdd:pfam16796 95 GQTGSGSNDGM---------IPRAREQIFRFISSLkKGWKYTIELQFVEIYNESSQDLL 144
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
632-1162 |
1.55e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 93.08 E-value: 1.55e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 632 RINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEIsklsalvdgkgllsnLELEKRITDLQKELNKEVEEK 711
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLEL---------------EELELELEEAQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 712 ETLQKEVHLLSElkslpsevetLRRELHEKSEELcviTTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSD 791
Cdd:COG1196 298 ARLEQDIARLEE----------RRRELEERLEEL---EEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 792 EECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKL 871
Cdd:COG1196 365 EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 872 QQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKMKATEEMSDHLPI 951
Cdd:COG1196 445 EEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAG 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 952 KGREGSSDEVEqkLDGIDEENLLAESAHTVVGSGEDHGETEEQRK----------------------------------- 996
Cdd:COG1196 525 AVAVLIGVEAA--YEAALEAALAAALQNIVVEDDEVAAAAIEYLKaakagratflpldkiraraalaaalargaigaavd 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 997 -IDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLA 1075
Cdd:COG1196 603 lVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELE 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1076 EIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLENLQNEFRNQALALERVETERL-----ELAQKLHENYEKMESI 1150
Cdd:COG1196 683 ELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELleeeeLLEEEALEELPEPPDL 762
|
570
....*....|..
gi 1958755384 1151 TKERNDLKELQE 1162
Cdd:COG1196 763 EELERELERLER 774
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1068-1812 |
2.75e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 92.43 E-value: 2.75e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1068 SRAHERLAEIEEK---LKEKNQKlQETQQQLVSIQEAMSEMQAKVTDLENLQNEFRNQALALERV--------ETERLEL 1136
Cdd:TIGR02168 152 AKPEERRAIFEEAagiSKYKERR-KETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYkelkaelrELELALL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1137 AQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQ 1216
Cdd:TIGR02168 231 VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRER 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1217 ASSTQDTGKTNPASQGETpvprEQELLPDAEEARASAEKGSELEpvEEHSRTAHSLTTEgiEMEILALTKKLEESQKEIS 1296
Cdd:TIGR02168 311 LANLERQLEELEAQLEEL----ESKLDELAEELAELEEKLEELK--EELESLEAELEEL--EAELEELESRLEELEEQLE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1297 CLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARccLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTT 1376
Cdd:TIGR02168 383 TLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELL--KKLEEAELKELQAELEELEEELEELQEELERLE 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1377 GELERKVQELCEKQEQLNIKEtSEVQGKMSELDHIRALLLTKDSALQSVesdrlrlnKQLEESQEEIKI-------LIKE 1449
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAE-RELAQLQARLDSLERLQENLEGFSEGV--------KALLKNQSGLSGilgvlseLISV 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1450 REELRRAQEAL------HVEREQQQESIKEISTRLQELQDKEYEY-LVMKSLNETQGNKCEDLNQQLEAQKSSLEKVE-- 1520
Cdd:TIGR02168 532 DEGYEAAIEAAlggrlqAVVVENLNAAKKAIAFLKQNELGRVTFLpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKfd 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1521 ----------MQNVNLTQRLNETLEEMKS-------VAKERDELRSV------EERLTADRDQLKKSLEETITKNQELQE 1577
Cdd:TIGR02168 612 pklrkalsylLGGVLVVDDLDNALELAKKlrpgyriVTLDGDLVRPGgvitggSAKTNSSILERRREIEELEEKIEELEE 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1578 KGHQLSQVKADLRETMDQMEQLKEQLEAQnstLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRE 1657
Cdd:TIGR02168 692 KIAELEKALAELRKELEELEEELEQLRKE---LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEE 768
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1658 SLRQTEASDLEKQEKLriahldlKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAG 1737
Cdd:TIGR02168 769 RLEEAEEELAEAEAEI-------EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958755384 1738 ETKKQLKEQGLALSKIEMENLNLAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQLKDSLREAKFKAHQNYEE 1812
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRE 916
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1015-1803 |
9.46e-18 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 90.51 E-value: 9.46e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1015 IAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHvTEKSEELSRaheRLAEIEEKLKEKNQKLQETQqq 1094
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREK-AERYQALLK---EKREYEGYELLKEKEALERQ-- 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1095 lvsIQEAMSEMQAKVTDLENLQNEFRNQALALERVETERLELAQKLHENYEkmESITKERNDLKELQESFEIEKKQLKEY 1174
Cdd:TIGR02169 239 ---KEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE--EEQLRVKEKIGELEAEIASLERSIAEK 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1175 AREMESAglqtKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKTnpasqgetpvpREQELlpdaeearasAE 1254
Cdd:TIGR02169 314 ERELEDA----EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAE-----------LKEEL----------ED 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1255 KGSELEPVEEHSRTAHSlttegiemEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETE 1334
Cdd:TIGR02169 369 LRAELEEVDKEFAETRD--------ELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELE 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1335 EELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCEKQEQLNIKETSE-------------- 1400
Cdd:TIGR02169 441 EEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVrggraveevlkasi 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1401 --VQGKMSELDHIRALLLTkdsALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQeALHVEREQQQESIKEISTRL 1478
Cdd:TIGR02169 521 qgVHGTVAQLGSVGERYAT---AIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRAT-FLPLNKMRDERRDLSILSED 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1479 QELQ--------DKEYEYLVMKSLNETQgnkcedLNQQLEAQKSSLEKVEMqnVNLTQRLNETLEEMKS----------- 1539
Cdd:TIGR02169 597 GVIGfavdlvefDPKYEPAFKYVFGDTL------VVEDIEAARRLMGKYRM--VTLEGELFEKSGAMTGgsraprggilf 668
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1540 VAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLK 1619
Cdd:TIGR02169 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS 748
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1620 LTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQ-EKLRIAHLDLKEHQETIERLMGSVAKRT 1698
Cdd:TIGR02169 749 LEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAElSKLEEEVSRIEARLREIEQKLNRLTLEK 828
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1699 EEVSDMNMELERANTRLQEKVQELKAsELQLLKSKVEagETKKQLKEQGLALSKIEMENLNLAQQIHQNLEEMKSISKER 1778
Cdd:TIGR02169 829 EYLEKEIQELQEQRIDLKEQIKSIEK-EIENLNGKKE--ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKI 905
|
810 820
....*....|....*....|....*
gi 1958755384 1779 DDLKRMEEILRMEKDQLKDSLREAK 1803
Cdd:TIGR02169 906 EELEAQIEKKRKRLSELKAKLEALE 930
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
516-1289 |
1.33e-17 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 90.13 E-value: 1.33e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 516 DYEQLRRENEDLKLKLKEKNELEEFEFLeQREEKDQENELSSKV------ELLKEKEDQIKELQRyIDAQKSETTKTDLS 589
Cdd:TIGR02169 178 ELEEVEENIERLDLIIDEKRQQLERLRR-EREKAERYQALLKEKreyegyELLKEKEALERQKEA-IERQLASLEEELEK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 590 YSSEATEDLKQAMRTLSDLDTVALDAKRESAflrSENLELKERINELSDSCKQMEngiqmyqRQLEAKKQVQADLEKELQ 669
Cdd:TIGR02169 256 LTEEISELEKRLEEIEQLLEELNKKIKDLGE---EEQLRVKEKIGELEAEIASLE-------RSIAEKERELEDAEERLA 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 670 LAFQEISKLSALVDgkgllsnlELEKRITDLQKELNKEVEEKETLQKEVHLL-SELKSLPSEVETLRRELHEKSEELCVI 748
Cdd:TIGR02169 326 KLEAEIDKLLAEIE--------ELEREIEEERKRRDKLTEEYAELKEELEDLrAELEEVDKEFAETRDELKDYREKLEKL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 749 TTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAAsqlsqrssdeecqalkslhveLKHRQEEVLEESERVKQELSQKTQE 828
Cdd:TIGR02169 398 KREINELKRELDRLQEELQRLSEELADLNAAIAG---------------------IEAKINELEEEKEDKALEIKKQEWK 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 829 LAQKTAegqemlnQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQD 908
Cdd:TIGR02169 457 LEQLAA-------DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQ 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 909 TV-------------------NMNIDTQEQLLNALESLKQHQET----INMLKMKATEEMSDHLPIKGREG--------- 956
Cdd:TIGR02169 530 LGsvgeryataievaagnrlnNVVVEDDAVAKEAIELLKRRKAGratfLPLNKMRDERRDLSILSEDGVIGfavdlvefd 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 957 -----------------SSDEVEQKLDGID-----EENLLAESAHTVVGSGEDHG-----------ETEEQRKIDSLLQE 1003
Cdd:TIGR02169 610 pkyepafkyvfgdtlvvEDIEAARRLMGKYrmvtlEGELFEKSGAMTGGSRAPRGgilfsrsepaeLQRLRERLEGLKRE 689
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1004 NSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKE 1083
Cdd:TIGR02169 690 LSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEE 769
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1084 KNQKLQETQQQLVSIQ--EAMSEMQAKVTDLENLQNEFRNQALALERVETERLELAQKLHENYEKMESITKERNDLKELQ 1161
Cdd:TIGR02169 770 LEEDLHKLEEALNDLEarLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQI 849
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1162 ESFEIEKKQLKEYAREMEsaglqtkEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTgktnpASQGETPVPREQE 1241
Cdd:TIGR02169 850 KSIEKEIENLNGKKEELE-------EELEELEAALRDLESRLGDLKKERDELEAQLRELERK-----IEELEAQIEKKRK 917
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|.
gi 1958755384 1242 LLPDAEEARASA-EKGSELEP--VEEHSRTAHSLTTEGIEMEILALTKKLE 1289
Cdd:TIGR02169 918 RLSELKAKLEALeEELSEIEDpkGEDEEIPEEELSLEDVQAELQRVEEEIR 968
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
991-1595 |
1.38e-17 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 89.71 E-value: 1.38e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 991 TEEQRKIDSLLQ-----------ENSRLqqTLESIIAEKEQLKMDLKENIEMSVEN---------QEELRILRDELKR-- 1048
Cdd:PRK02224 149 SDRQDMIDDLLQlgkleeyreraSDARL--GVERVLSDQRGSLDQLKAQIEEKEEKdlherlnglESELAELDEEIERye 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1049 -QQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLENLQNEFRNQA---- 1123
Cdd:PRK02224 227 eQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAgldd 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1124 LALERVETERLELAQKLHENYEKME----SITKERNDLKELQES---FEIEKKQLKEYAREMESAGLQTKEQLNIAHANL 1196
Cdd:PRK02224 307 ADAEAVEARREELEDRDEELRDRLEecrvAAQAHNEEAESLREDaddLEERAEELREEAAELESELEEAREAVEDRREEI 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1197 KEYQEIIKELRGSISEKEAQASSTQDTGKTNPASQGETpVPREQELLPDAEEARASAEKGSELepveehsRTAHSLTTEG 1276
Cdd:PRK02224 387 EELEEEIEELRERFGDAPVDLGNAEDFLEELREERDEL-REREAELEATLRTARERVEEAEAL-------LEAGKCPECG 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1277 IEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDArrtlanhlETEEELSLarccLKEQENKIDSLIv 1356
Cdd:PRK02224 459 QPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLV--------EAEDRIER----LEERREDLEELI- 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1357 slSQKEAELSSVRVQLEvttgELERKVQELCEKQEQlnikETSEVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKqL 1436
Cdd:PRK02224 526 --AERRETIEEKRERAE----ELRERAAELEAEAEE----KREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-I 594
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1437 EESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDkeyeylvmkslnETQGNKCEDLNQQLEAQKSSL 1516
Cdd:PRK02224 595 RTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEA------------EFDEARIEEAREDKERAEEYL 662
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958755384 1517 EKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTAdrdqlkksLEETITKNQELQEKGHQLSQVKADLRETMDQ 1595
Cdd:PRK02224 663 EQVEEKLDELREERDDLQAEIGAVENELEELEELRERREA--------LENRVEALEALYDEAEELESMYGDLRAELRQ 733
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
803-1663 |
1.53e-17 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 90.13 E-value: 1.53e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 803 ELKHRQEEVLEESERVKQELsqktQELAQKTAEGQEMLNQMEELREKLER-RDSSLQSAEKEKNLLTEKLQQTLEEVRAL 881
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENI----ERLDLIIDEKRQQLERLRREREKAERyQALLKEKREYEGYELLKEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 882 TQEKNDLKQLQESLQTERDQLRSDIqdtvnmnidtqeqllnalESLKQHQETINMLKMKATEEMSDHLPIKGREGSSdEV 961
Cdd:TIGR02169 243 ERQLASLEEELEKLTEEISELEKRL------------------EEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEA-EI 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 962 EQKLDGIDEENL-LAESAHTVVGSGEDHGETEEQ-RKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEmsvENQEEL 1039
Cdd:TIGR02169 304 ASLERSIAEKEReLEDAEERLAKLEAEIDKLLAEiEELEREIEEERKRRDKLTEEYAELKEELEDLRAELE---EVDKEF 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1040 RILRDELKRQQEiaaqEKDHVTEKSEELSRAHERLaeiEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLenlqnef 1119
Cdd:TIGR02169 381 AETRDELKDYRE----KLEKLKREINELKRELDRL---QEELQRLSEELADLNAAIAGIEAKINELEEEKEDK------- 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1120 rnqALALERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEY 1199
Cdd:TIGR02169 447 ---ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGV 523
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1200 QEIIKELrGSISEKEAQASSTQDTGKTNPASQGETPVPREQ-ELLPDAEEARASAEKGSELEPVEEHSRTAHSLTTEGIE 1278
Cdd:TIGR02169 524 HGTVAQL-GSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAiELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFA 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1279 MEILALTKKLEESQKEI--SCLTKERSDLRR---------------------------TQEALQVECAQLKDDARRTLAN 1329
Cdd:TIGR02169 603 VDLVEFDPKYEPAFKYVfgDTLVVEDIEAARrlmgkyrmvtlegelfeksgamtggsrAPRGGILFSRSEPAELQRLRER 682
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1330 HLETEEELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCEKQEQLNIKEtSEVQGKMSELD 1409
Cdd:TIGR02169 683 LEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE-QEIENVKSELK 761
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1410 HIRALLLTKDSALQSVES------DRLR------LNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTR 1477
Cdd:TIGR02169 762 ELEARIEELEEDLHKLEEalndleARLShsripeIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQ 841
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1478 LQELQDKEYEylvmkslnetQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTAD 1557
Cdd:TIGR02169 842 RIDLKEQIKS----------IEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQ 911
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1558 RDQLKKSLEETITK----NQELQEKGHQLSQVKADLRETMDqMEQLKEQLEAQNSTLESIEIEKLKLTQQLNEnlkemtl 1633
Cdd:TIGR02169 912 IEKKRKRLSELKAKlealEEELSEIEDPKGEDEEIPEEELS-LEDVQAELQRVEEEIRALEPVNMLAIQEYEE------- 983
|
890 900 910
....*....|....*....|....*....|
gi 1958755384 1634 VAKENDDLKIMDEALREERDQLRESLRQTE 1663
Cdd:TIGR02169 984 VLKRLDELKEKRAKLEEERKAILERIEEYE 1013
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
480-1206 |
5.03e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.19 E-value: 5.03e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 480 EPLAEAEWSSATALLSEENLESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKEKNELEEFEFLEQREEKDQENELSSKV 559
Cdd:TIGR02168 309 ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 560 ELLKEKEDQIKELQRYIDAQKSETTKTDLSYSSEATE--------DLKQAMRTLSDLDTVALDAKRESAFLRSENLELKE 631
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEllkkleeaELKELQAELEELEEELEELQEELERLEEALEELRE 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 632 RINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSALVDGKGLLSNL-----ELEKRI-TDLQKELN 705
Cdd:TIGR02168 469 ELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELisvdeGYEAAIeAALGGRLQ 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 706 KEVEEKETLQKE------------VHLLSELKSLPSEVETLRRELHEKSEELCVITTEREKLfsemahkDSRIQGLLEEI 773
Cdd:TIGR02168 549 AVVVENLNAAKKaiaflkqnelgrVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKF-------DPKLRKALSYL 621
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 774 -GNTK--DDLaASQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKL 850
Cdd:TIGR02168 622 lGGVLvvDDL-DNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKAL 700
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 851 ERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQH 930
Cdd:TIGR02168 701 AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA 780
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 931 QETINMLKmkateemsdhLPIKGREGSSDEVEQKLDGI-DEENLLAESAHTVvgsgedhgeteeQRKIDSLLQENSRLQQ 1009
Cdd:TIGR02168 781 EAEIEELE----------AQIEQLKEELKALREALDELrAELTLLNEEAANL------------RERLESLERRIAATER 838
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1010 TLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQ 1089
Cdd:TIGR02168 839 RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELE 918
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1090 ETQQQLVSIQEAMSEMQAKvtdLENLQNEFRNQA-LALERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEK 1168
Cdd:TIGR02168 919 ELREKLAQLELRLEGLEVR---IDNLQERLSEEYsLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEY 995
|
730 740 750
....*....|....*....|....*....|....*...
gi 1958755384 1169 KQLKEYAREMEsaglQTKEQLNIAHANLkeyQEIIKEL 1206
Cdd:TIGR02168 996 EELKERYDFLT----AQKEDLTEAKETL---EEAIEEI 1026
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
561-1293 |
1.57e-16 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 86.71 E-value: 1.57e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 561 LLKEKEDQIKELQRYIDaQKSETTKTDLSYSSEATEDLKQAMRTLSDLDTVALDAKRESaflrsenlelkerinelSDSC 640
Cdd:pfam15921 79 VLEEYSHQVKDLQRRLN-ESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRE-----------------SQSQ 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 641 KQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLsaLVDGKGLLSnlELEKRITDLQKELNKEVEEKETLQKeVHL 720
Cdd:pfam15921 141 EDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKM--MLSHEGVLQ--EIRSILVDFEEASGKKIYEHDSMST-MHF 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 721 LSE-------LKSLPSEVETLRRELHEKSEELCVITTERE-KLFSEMAHKDSRIQGLLEEigntkDDLAASQLSQRSSDE 792
Cdd:pfam15921 216 RSLgsaiskiLRELDTEISYLKGRIFPVEDQLEALKSESQnKIELLLQQHQDRIEQLISE-----HEVEITGLTEKASSA 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 793 ECQAlKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEML----NQMEELREKLERRDSSLQSAEKEKNL-- 866
Cdd:pfam15921 291 RSQA-NSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKrmyeDKIEELEKQLVLANSELTEARTERDQfs 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 867 -----LTEKLQQTLEEV----RALTQEKNDLKQLQESLQTER---DQLRSDIQDTvNMNIDTQEQLLNALESLKQHQETI 934
Cdd:pfam15921 370 qesgnLDDQLQKLLADLhkreKELSLEKEQNKRLWDRDTGNSitiDHLRRELDDR-NMEVQRLEALLKAMKSECQGQMER 448
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 935 NMLKMKATEEMSDHLP--IKGREGSSDEVEQKLDGIDEENLLAESAHTVVgSGEDHGETEEQRKIDSLLQENSRLQQTLE 1012
Cdd:pfam15921 449 QMAAIQGKNESLEKVSslTAQLESTKEMLRKVVEELTAKKMTLESSERTV-SDLTASLQEKERAIEATNAEITKLRSRVD 527
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1013 SIIAEKEQLKMDlKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERL----AEIEEKLKEKNQKL 1088
Cdd:pfam15921 528 LKLQELQHLKNE-GDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMqvekAQLEKEINDRRLEL 606
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1089 QETQQQLVSIQEAMSEMQAKVTDLENlqnefrnQALALERVETERLELAQKLHENYEKM-ESITKERNDLKELQESFEIE 1167
Cdd:pfam15921 607 QEFKILKDKKDAKIRELEARVSDLEL-------EKVKLVNAGSERLRAVKDIKQERDQLlNEVKTSRNELNSLSEDYEVL 679
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1168 KKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQdtgKTNPASQGEtpVPREQELLPDAE 1247
Cdd:pfam15921 680 KRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQ---KQITAKRGQ--IDALQSKIQFLE 754
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 1958755384 1248 EARASAEKGSELEPvEEHSRTAHSLTTEGIEMEILALTKKLEESQK 1293
Cdd:pfam15921 755 EAMTNANKEKHFLK-EEKNKLSQELSTVATEKNKMAGELEVLRSQE 799
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
751-1602 |
2.10e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 86.28 E-value: 2.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 751 EREKLFSEMA---HKDSRIQGLLEEIGNTKDDLAASQLSQrssDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQ 827
Cdd:TIGR02169 154 ERRKIIDEIAgvaEFDRKKEKALEELEEVEENIERLDLII---DEKRQQLERLRREREKAERYQALLKEKREYEGYELLK 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 828 ELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQ-EKNDLKQLQESLQTERDQLRSDI 906
Cdd:TIGR02169 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKIGELEAEIASLERSI 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 907 QDTVNMNIDTQEQLLNALESLKQHQETINMLKMKATEEMSDHLPIKGREGSSDEVEqkldgideENLLAESAhtvvgsge 986
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL--------EDLRAELE-------- 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 987 dhgetEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQqeiaaqeKDHVTEKSEE 1066
Cdd:TIGR02169 375 -----EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGI-------EAKINELEEE 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1067 LSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLENLQNEFRNQALALERVETERLELAQKLHENYEK 1146
Cdd:TIGR02169 443 KEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQG 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1147 MESITKERNDLKElqesfeiekkqlkEYAREMESAGLQTKEQLNIA-HANLKEYQEIIKELRGSIS-----EKEAQASST 1220
Cdd:TIGR02169 523 VHGTVAQLGSVGE-------------RYATAIEVAAGNRLNNVVVEdDAVAKEAIELLKRRKAGRAtflplNKMRDERRD 589
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1221 QDTGKTNPA-----------SQGETPVP---REQELLPDAEEARASAEK-------GSELEPveEHSRTAHSLTTEGIEM 1279
Cdd:TIGR02169 590 LSILSEDGVigfavdlvefdPKYEPAFKyvfGDTLVVEDIEAARRLMGKyrmvtleGELFEK--SGAMTGGSRAPRGGIL 667
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1280 EILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLIVSLS 1359
Cdd:TIGR02169 668 FSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLS 747
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1360 QKEAELSSVRVQLEVTTGELERKVQELCEKQEQLNIKETS-------EVQGKMSELD----HIRALLLTKDSALQSVESD 1428
Cdd:TIGR02169 748 SLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARlshsripEIQAELSKLEeevsRIEARLREIEQKLNRLTLE 827
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1429 RLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDK-----------EYEYLVMKSLNET 1497
Cdd:TIGR02169 828 KEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRlgdlkkerdelEAQLRELERKIEE 907
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1498 QGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERD---ELRSVEERLTADRDQLKKSL---EETITK 1571
Cdd:TIGR02169 908 LEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDvqaELQRVEEEIRALEPVNMLAIqeyEEVLKR 987
|
890 900 910
....*....|....*....|....*....|.
gi 1958755384 1572 NQELQEKGHQLSQVKADLRETMDQMEQLKEQ 1602
Cdd:TIGR02169 988 LDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
513-1212 |
2.48e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.88 E-value: 2.48e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 513 LVLDYEQLRRENEDLKLKLKEKNELeefefleQREEKDQENELSSKVELLK----EKEDQIKELQRYIDAQKSETtktdl 588
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEE-------LEELTAELQELEEKLEELRlevsELEEEIEELQKELYALANEI----- 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 589 sysSEATEDLKQAMRTLSDLDTVALDAKRESAFLRSENLELKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKEL 668
Cdd:TIGR02168 298 ---SRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 669 QLAFQEI----SKLSALVDGKGLLSN--LELEKRITDLQKELNKEVEEKETLQKEVHLlSELKSLPSEVETLRRELHEKS 742
Cdd:TIGR02168 375 EELEEQLetlrSKVAQLELQIASLNNeiERLEARLERLEDRRERLQQEIEELLKKLEE-AELKELQAELEELEEELEELQ 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 743 EELCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQALK------------------SLHVEL 804
Cdd:TIGR02168 454 EELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKallknqsglsgilgvlseLISVDE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 805 KHRQ--EEVLEES----------------ERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNL 866
Cdd:TIGR02168 534 GYEAaiEAALGGRlqavvvenlnaakkaiAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPK 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 867 LTEKLQQTLEEVRALTQEKNDLKQLQESLQTER------DQLRSD------IQDTVNMNIDTQEQLLNALESLKQHQETI 934
Cdd:TIGR02168 614 LRKALSYLLGGVLVVDDLDNALELAKKLRPGYRivtldgDLVRPGgvitggSAKTNSSILERRREIEELEEKIEELEEKI 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 935 NMLKMKATEEMSDHLPIKgregssDEVEQKLDGIDEENLLAESAHTVVGSGEDHGETEEQRkIDSLLQENSRLQQTLESI 1014
Cdd:TIGR02168 694 AELEKALAELRKELEELE------EELEQLRKELEELSRQISALRKDLARLEAEVEQLEER-IAQLSKELTELEAEIEEL 766
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1015 IAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQ 1094
Cdd:TIGR02168 767 EERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQ 846
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1095 LVSIQEAMSEMQAKVTDLENLQNEFRNQA------------------LALERVETERLELAQKLHENYEKMESITKERND 1156
Cdd:TIGR02168 847 IEELSEDIESLAAEIEELEELIEELESELeallnerasleealallrSELEELSEELRELESKRSELRRELEELREKLAQ 926
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958755384 1157 LKELQESFEIEKKQLKEYAREMESAGLQTKEQL-NIAHANLKEYQEIIKELRGSISE 1212
Cdd:TIGR02168 927 LELRLEGLEVRIDNLQERLSEEYSLTLEEAEALeNKIEDDEEEARRRLKRLENKIKE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1494-1802 |
7.48e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.22 E-value: 7.48e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1494 LNETQGN--KCEDLNQQLEAQKSSLEK---------------VEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTA 1556
Cdd:COG1196 181 LEATEENleRLEDILGELERQLEPLERqaekaeryrelkeelKELEAELLLLKLRELEAELEELEAELEELEAELEELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1557 DRDQLKKSLEEtitKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAK 1636
Cdd:COG1196 261 ELAELEAELEE---LRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1637 ENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQ 1716
Cdd:COG1196 338 ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1717 EKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLNLAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQLK 1796
Cdd:COG1196 418 RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLL 497
|
....*.
gi 1958755384 1797 DSLREA 1802
Cdd:COG1196 498 EAEADY 503
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
956-1701 |
1.19e-15 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 84.04 E-value: 1.19e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 956 GSSDEVEQKLDGIDE--ENLLAESAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSV 1033
Cdd:PTZ00121 1036 GNNDDVLKEKDIIDEdiDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEAR 1115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1034 ENQEELRILRD-----ELKRQQEIAAQEKDHVTE--KSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQ 1106
Cdd:PTZ00121 1116 KAEEAKKKAEDarkaeEARKAEDARKAEEARKAEdaKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRK 1195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1107 AkvtdlenlqnEFRNQALALERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTK 1186
Cdd:PTZ00121 1196 A----------EDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHF 1265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1187 EQLNIAHA--------NLKEYQEIIK--ELRGSISEK---EAQASSTQDTGKTNPASQGETPVPREQELLPDAEEARASA 1253
Cdd:PTZ00121 1266 ARRQAAIKaeearkadELKKAEEKKKadEAKKAEEKKkadEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAA 1345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1254 E--------KGSELEPVEEHSRtAHSLTTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARR 1325
Cdd:PTZ00121 1346 EaakaeaeaAADEAEAAEEKAE-AAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAK 1424
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1326 TLANHLETEEELSLArcclKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCEKQEQLNiKETSEVQGKM 1405
Cdd:PTZ00121 1425 KKAEEKKKADEAKKK----AEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAK-KKAEEAKKKA 1499
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1406 SELDHIRALLLTKDSALQSVESDRLRLNKQLEESQ--------EEIKIL--IKEREELRRAQEALHVEREQQQESIKEIS 1475
Cdd:PTZ00121 1500 DEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKkadeakkaEEKKKAdeLKKAEELKKAEEKKKAEEAKKAEEDKNMA 1579
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1476 TRLQELQDKEYE---YLVMKSLNETQGNKCEDLNQQLEAQKSSlekvemqnvnltqrlnETLEEMKSVAKERDELRSVEE 1552
Cdd:PTZ00121 1580 LRKAEEAKKAEEariEEVMKLYEEEKKMKAEEAKKAEEAKIKA----------------EELKKAEEEKKKVEQLKKKEA 1643
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1553 RLTADRDQLKKSLEETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEieklKLTQQLNENLKEMT 1632
Cdd:PTZ00121 1644 EEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE----ELKKKEAEEKKKAE 1719
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958755384 1633 LVAKENDDLKIMDEALREERDqlrESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEV 1701
Cdd:PTZ00121 1720 ELKKAEEENKIKAEEAKKEAE---EDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL 1785
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1044-1638 |
2.89e-15 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 82.42 E-value: 2.89e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1044 DELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQ-------LVSIQEAMSEMQAKVTDLENLQ 1116
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREineisseLPELREELEKLEKEVKELEELK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1117 NEFRNQALALERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYaREMESAGLQTKEQLNIAHANL 1196
Cdd:PRK03918 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEY-IKLSEFYEEYLDELREIEKRL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1197 KEYQEIIKELRGSISEKEAQASSTQDTGKtnpasqgetpvpREQELLPDAEEARASAEKGSELEPV----EEHSRTAHSL 1272
Cdd:PRK03918 317 SRLEEEINGIEERIKELEEKEERLEELKK------------KLKELEKRLEELEERHELYEEAKAKkeelERLKKRLTGL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1273 TTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARR--TLANHLETEEELSLARCCLKEQENk 1350
Cdd:PRK03918 385 TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpVCGRELTEEHRKELLEEYTAELKR- 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1351 IDSLIVSLSQKEAELSSVRVQLEVTTGE------LERKVQELCEKQEQLNIKETSEVQGKMSELDHIRALLLTKDSALQS 1424
Cdd:PRK03918 464 IEKELKEIEEKERKLRKELRELEKVLKKeselikLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKS 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1425 VESDRLRLnKQLEESQEEIKILIKEREElrRAQEALHVEREQQQESIKEISTRLQELQDKEYEYLVMKslnetqgnkceD 1504
Cdd:PRK03918 544 LKKELEKL-EELKKKLAELEKKLDELEE--ELAELLKELEELGFESVEELEERLKELEPFYNEYLELK-----------D 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1505 LNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSveerlTADRDQLKKSLEETITKNQELQEKGHQLSQ 1584
Cdd:PRK03918 610 AEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK-----KYSEEEYEELREEYLELSRELAGLRAELEE 684
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958755384 1585 VKADLRETMDQMEQLKEQLEAQNSTLESIE-IEK-LKLTQQLNENLKEMTLVAKEN 1638
Cdd:PRK03918 685 LEKRREEIKKTLEKLKEELEEREKAKKELEkLEKaLERVEELREKVKKYKALLKER 740
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
805-1622 |
1.52e-14 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 80.57 E-value: 1.52e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 805 KHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSS----LQSAEKEKNLLTEKLQQTLEEVRA 880
Cdd:PTZ00121 1086 DNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEdarkAEEARKAEDAKRVEIARKAEDARK 1165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 881 L--TQEKNDLKQLQESLQTERDQLRSDIQDTvnmnidtqEQLLNALESLKQHQETINMLKMKATEEMSDHLPIKGREGSS 958
Cdd:PTZ00121 1166 AeeARKAEDAKKAEAARKAEEVRKAEELRKA--------EDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKK 1237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 959 DEVE----QKLDGIDEENLLAESAHTVVGSGEDHGETEEQRKIDSLlqensrlqQTLESIIAEKEQLKMDLKENIEMSVE 1034
Cdd:PTZ00121 1238 DAEEakkaEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADEL--------KKAEEKKKADEAKKAEEKKKADEAKK 1309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1035 NQEELRiLRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQqlvSIQEAMSEMQAKVTDLEN 1114
Cdd:PTZ00121 1310 KAEEAK-KADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE---AAEKKKEEAKKKADAAKK 1385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1115 LQNEFRNQALALERVETERlelaqKLHENYEKMESITKERNDLKELQEsfeiEKKQLKEYAREMESAglQTKEQLNIAHA 1194
Cdd:PTZ00121 1386 KAEEKKKADEAKKKAEEDK-----KKADELKKAAAAKKKADEAKKKAE----EKKKADEAKKKAEEA--KKADEAKKKAE 1454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1195 NLKEYQEIIKELRGSISEKEAQAsstqdtgKTNPASQGETPVPREQELLPDAEEARASAE---KGSELEPVEEHSRTAHS 1271
Cdd:PTZ00121 1455 EAKKAEEAKKKAEEAKKADEAKK-------KAEEAKKADEAKKKAEEAKKKADEAKKAAEakkKADEAKKAEEAKKADEA 1527
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1272 LTTEgiEMEILALTKKLEESQKEISclTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKI 1351
Cdd:PTZ00121 1528 KKAE--EAKKADEAKKAEEKKKADE--LKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEE 1603
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1352 DSLIVSLSQKEAELSSVRVQlEVTTGELERKVQELCEKQEQLNIKETSEVQgKMSELDHIRALLLTKDSALQSVESDRLR 1431
Cdd:PTZ00121 1604 EKKMKAEEAKKAEEAKIKAE-ELKKAEEEKKKVEQLKKKEAEEKKKAEELK-KAEEENKIKAAEEAKKAEEDKKKAEEAK 1681
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1432 lnKQLEESQEEIKILIKEREELRRAQEAlhveREQQQESIKEISTRLQELQDKEYEYLVMKSLNETQGNKCEDLNQQLEA 1511
Cdd:PTZ00121 1682 --KAEEDEKKAAEALKKEAEEAKKAEEL----KKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEE 1755
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1512 QKssleKVEMQNVNLTQRLNETLEEMKSVAKErdelrSVEERLTADRDQLKKSLEETITKNQELQEKGHQLSQVKADLRE 1591
Cdd:PTZ00121 1756 KK----KIAHLKKEEEKKAEEIRKEKEAVIEE-----ELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKE 1826
|
810 820 830
....*....|....*....|....*....|..
gi 1958755384 1592 TMDQmeQLKEQLEAQNSTL-ESIEIEKLKLTQ 1622
Cdd:PTZ00121 1827 MEDS--AIKEVADSKNMQLeEADAFEKHKFNK 1856
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
694-1476 |
2.44e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 79.34 E-value: 2.44e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 694 EKRITDLQKELNKEVEEKETLQKEVHLLS-ELKSLPSEVETLRRELHEKSEELCVITTEREKLFS-EMAHKDSRIQGLLE 771
Cdd:TIGR02169 222 EYEGYELLKEKEALERQKEAIERQLASLEeELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKIGELEA 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 772 EIGNTKDDLAASQLSQRSSDEECQ-------ALKSLHVELKHRQEE-------VLEESERVKQELSQKTQELAQKTAEGQ 837
Cdd:TIGR02169 302 EIASLERSIAEKERELEDAEERLAkleaeidKLLAEIEELEREIEEerkrrdkLTEEYAELKEELEDLRAELEEVDKEFA 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 838 EMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQ 917
Cdd:TIGR02169 382 ETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLA 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 918 EQLLNALESLKQHQETINMLKMKATEEMSDHLPIKGREGSSdeVEQKLDGIDEENLLAESAHTVVGSGEDHGETEEQRKI 997
Cdd:TIGR02169 462 ADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARAS--EERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYAT 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 998 DSLLQENSRLQQ-TLESIIAEKEQLKMDLKENI---------EMSVENQEELRILRD----------ELKRQQEIAAQE- 1056
Cdd:TIGR02169 540 AIEVAAGNRLNNvVVEDDAVAKEAIELLKRRKAgratflplnKMRDERRDLSILSEDgvigfavdlvEFDPKYEPAFKYv 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1057 -KDHVTEKSEELSRAHE---RLAEIEEKLKEKN-------QKLQETQQQLVSIQEAMSEMQAKVTDLENLQNEFRNQala 1125
Cdd:TIGR02169 620 fGDTLVVEDIEAARRLMgkyRMVTLEGELFEKSgamtggsRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSE--- 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1126 LERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAglqtkeqlniahanLKEYQEIIKE 1205
Cdd:TIGR02169 697 LRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE--------------IENVKSELKE 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1206 LRGSISEKEAQASSTQDTGKTNPASQGETPVPREQELLPDAEEARASAEKGSELEPVEEHSRTahslttegieMEILALT 1285
Cdd:TIGR02169 763 LEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLT----------LEKEYLE 832
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1286 KKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAEL 1365
Cdd:TIGR02169 833 KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI 912
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1366 SSVRVQLEVTTGELERKVQELCEKQEqlNIKETSEVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQeeiki 1445
Cdd:TIGR02169 913 EKKRKRLSELKAKLEALEEELSEIED--PKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVL----- 985
|
810 820 830
....*....|....*....|....*....|.
gi 1958755384 1446 liKEREELRRAQEALHVEREQQQESIKEIST 1476
Cdd:TIGR02169 986 --KRLDELKEKRAKLEEERKAILERIEEYEK 1014
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
830-1772 |
3.85e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 78.96 E-value: 3.85e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 830 AQKTAEGQEMLNQMEELREKLERrdssLQSAEKEKNLLTEKLQ---QTLEEVRALTQEKNDLKQ--LQESLQTERDQLrs 904
Cdd:TIGR02169 166 AEFDRKKEKALEELEEVEENIER----LDLIIDEKRQQLERLRrerEKAERYQALLKEKREYEGyeLLKEKEALERQK-- 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 905 diqdtvnmnidtqEQLLNALESLKQHQEtinmlkmKATEEMSDhlpikgREGSSDEVEQKLDGIDEENllaesahtvvgs 984
Cdd:TIGR02169 240 -------------EAIERQLASLEEELE-------KLTEEISE------LEKRLEEIEQLLEELNKKI------------ 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 985 gEDHGEtEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEks 1064
Cdd:TIGR02169 282 -KDLGE-EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTE-- 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1065 eELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKvtdLENLQNEFRNQALALERVETERLELAQKLHEny 1144
Cdd:TIGR02169 358 -EYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKRE---INELKRELDRLQEELQRLSEELADLNAAIAG-- 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1145 eKMESITKERNDLKELQESFEIEKKQLKEYAREMESAglqtKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTG 1224
Cdd:TIGR02169 432 -IEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY----EQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERV 506
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1225 KTNPASQGETPVPREQELLPDAEEARASAEKGSELEPVEEHSRTAHSLTTEGIEMEILALTKKLEESQKEISCLTK---E 1301
Cdd:TIGR02169 507 RGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKmrdE 586
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1302 RSDLRRTQEALQVECA--------QLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRVQLE 1373
Cdd:TIGR02169 587 RRDLSILSEDGVIGFAvdlvefdpKYEPAFKYVFGDTLVVEDIEAARRLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGI 666
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1374 VTTGELERKVQELCEKQEQLNIketsEVQGKMSELDHIRallltkdsalqsvesdrlrlnKQLEESQEEIKILIKEREEL 1453
Cdd:TIGR02169 667 LFSRSEPAELQRLRERLEGLKR----ELSSLQSELRRIE---------------------NRLDELSQELSDASRKIGEI 721
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1454 RRAQEALHVEREQQQESIKEISTRLQELQDKEYEYLVMKslnetqgnkcEDLNQQLEAQKSSLEKVEMQNVNLTQRLNEt 1533
Cdd:TIGR02169 722 EKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSEL----------KELEARIEELEEDLHKLEEALNDLEARLSH- 790
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1534 lEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQLsqvKADLRETMDQMEQLKEQLEAQNSTLESI 1613
Cdd:TIGR02169 791 -SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQEL---QEQRIDLKEQIKSIEKEIENLNGKKEEL 866
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1614 EIEKLKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLmgs 1693
Cdd:TIGR02169 867 EEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED--- 943
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958755384 1694 vakrtEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLNLAQQIhQNLEEMK 1772
Cdd:TIGR02169 944 -----EEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERI-EEYEKKK 1016
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1034-1717 |
8.01e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.67 E-value: 8.01e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1034 ENQEELRILRDELKRQQEIAAQEKDhVTEKSEELsRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLE 1113
Cdd:COG1196 186 ENLERLEDILGELERQLEPLERQAE-KAERYREL-KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELA 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1114 NLQNEFRNQALALERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAH 1193
Cdd:COG1196 264 ELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1194 ANLKEYQEIIKELRGSISEKEAQASstqdtgktnpasqgetpvpreqellpDAEEARASAEKgselepveehsrtahslt 1273
Cdd:COG1196 344 EELEEAEEELEEAEAELAEAEEALL--------------------------EAEAELAEAEE------------------ 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1274 tegiemEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARcclkEQENKIDS 1353
Cdd:COG1196 380 ------ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE----EALEEAAE 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1354 LIVSLSQKEAELSSVRVQLEVTTGELERKVQELcekqeqlnikeTSEVQGKMSELDHIRALLLTKDSALQSVEsdRLRLN 1433
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAEL-----------LEELAEAAARLLLLLEAEADYEGFLEGVK--AALLL 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1434 KQLEESQEEIKILIKEREELRRAQEALHVEREQQQesIKEISTRLQELQdkeyeylvmkslnetqgnkcEDLNQQLEAQK 1513
Cdd:COG1196 517 AGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNI--VVEDDEVAAAAI--------------------EYLKAAKAGRA 574
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1514 SSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLkksLEETITKNQELQEKGH--QLSQVKADLRE 1591
Cdd:COG1196 575 TFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTL---LGRTLVAARLEAALRRavTLAGRLREVTL 651
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1592 TMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKIM-DEALREERDQLRESLRQTEASDLEKQ 1670
Cdd:COG1196 652 EGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEeERELAEAEEERLEEELEEEALEEQLE 731
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 1958755384 1671 EKLRIAHLDLKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQE 1717
Cdd:COG1196 732 AEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
783-1618 |
1.38e-13 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 76.93 E-value: 1.38e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 783 SQLSQRSSDEECQalksLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEE---LREKLERRDSSLQS 859
Cdd:TIGR00618 96 CTRSHRKTEQPEQ----LYLEQKKGRGRILAAKKSETEEVIHDLLKLDYKTFTRVVLLPQGEFaqfLKAKSKEKKELLMN 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 860 AEKeknllTEKLQQTLEEVRALTQE-KNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINML- 937
Cdd:TIGR00618 172 LFP-----LDQYTQLALMEFAKKKSlHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLt 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 938 -KMKATEEMSdhlpiKGREGSSDEVEQKLDGIDEENLLAESAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQTLESIIA 1016
Cdd:TIGR00618 247 qKREAQEEQL-----KKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMR 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1017 EKEQLKMDLKENIEMSVENQEELRILRdELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIeEKLKEKNQKLQETQQQLV 1096
Cdd:TIGR00618 322 SRAKLLMKRAAHVKQQSSIEEQRRLLQ-TLHSQEIHIRDAHEVATSIREISCQQHTLTQHI-HTLQQQKTTLTQKLQSLC 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1097 SIQEAMSEMQAKVTDLENLQNEFRNQALALERVETERLELAQKLHENYEKMESITKERN-DLKELQESFEIEKKQLKeya 1175
Cdd:TIGR00618 400 KELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKiHLQESAQSLKEREQQLQ--- 476
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1176 rEMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTG-KTNPASQGETPVPREQEllpdaEEARASAE 1254
Cdd:TIGR00618 477 -TKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGpLTRRMQRGEQTYAQLET-----SEEDVYHQ 550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1255 KGSELEPVEEHSRTAHSlttegIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLanhLETE 1334
Cdd:TIGR00618 551 LTSERKQRASLKEQMQE-----IQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALL---RKLQ 622
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1335 EELSLARCCLKEQEnkidsliVSLSQKEAELSSVRVQLEVTTGELE---RKVQELCEKQEQLNIKETSEVQGKMSELDHI 1411
Cdd:TIGR00618 623 PEQDLQDVRLHLQQ-------CSQELALKLTALHALQLTLTQERVRehaLSIRVLPKELLASRQLALQKMQSEKEQLTYW 695
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1412 RALLLTKDSALQSVESDRLRLNKQLEESQEEIKILIKEREelrrAQEALHveREQQQESIKEISTRLQELQDKEYEYLVM 1491
Cdd:TIGR00618 696 KEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLA----AREDAL--NQSLKELMHQARTVLKARTEAHFNNNEE 769
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1492 KSLNETQGNKCEDLNQQLEAQKSSLEKvemqnvnLTQRLNETLEEMKSVAKERDELRSVE-ERLTADRDQLKKSLEETIT 1570
Cdd:TIGR00618 770 VTAALQTGAELSHLAAEIQFFNRLREE-------DTHLLKTLEAEIGQEIPSDEDILNLQcETLVQEEEQFLSRLEEKSA 842
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|.
gi 1958755384 1571 KNQEL---QEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKL 1618
Cdd:TIGR00618 843 TLGEIthqLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKIQFDGDAL 893
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
959-1827 |
2.49e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 76.26 E-value: 2.49e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 959 DEVEQKLDGIDEENLLAESAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEE 1038
Cdd:TIGR02169 194 DEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQL 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1039 LRILRDELKRQQEiaaQEKDHVTEKSEELsraHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLEN---- 1114
Cdd:TIGR02169 274 LEELNKKIKDLGE---EEQLRVKEKIGEL---EAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEReiee 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1115 -------LQNEFRNQALALERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKE 1187
Cdd:TIGR02169 348 erkrrdkLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNA 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1188 QLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKTNPAS--QGETPVPREQELLPDAEE--ARASAEKGSELEPVE 1263
Cdd:TIGR02169 428 AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQElyDLKEEYDRVEKELSKLQRelAEAEAQARASEERVR 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1264 EHSRTAHSLTT--EGIEMEILALTKKLEESQKEISCLTKERSD-LRRTQEALQVECAQLKDDARRTLANHLETEEELSLA 1340
Cdd:TIGR02169 508 GGRAVEEVLKAsiQGVHGTVAQLGSVGERYATAIEVAAGNRLNnVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDER 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1341 RCCLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGelerKVQELCEKQEQLNIKETSEVQGKMSEldhiRALLLTKDS 1420
Cdd:TIGR02169 588 RDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTL----VVEDIEAARRLMGKYRMVTLEGELFE----KSGAMTGGS 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1421 -ALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQdkeyeylvmkslnetqg 1499
Cdd:TIGR02169 660 rAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIE----------------- 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1500 NKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEEtitknQELQEKG 1579
Cdd:TIGR02169 723 KEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH-----SRIPEIQ 797
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1580 HQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESL 1659
Cdd:TIGR02169 798 AELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAAL 877
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1660 RQTEAS--DLEKQEKLRIAHLdlKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQEkVQELKASELQLLKSKVEAG 1737
Cdd:TIGR02169 878 RDLESRlgDLKKERDELEAQL--RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSE-IEDPKGEDEEIPEEELSLE 954
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1738 ETKKQLKEQGLALSKIEMENLNLAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQLKDSLREAKFKAHQNYEETVQYG 1817
Cdd:TIGR02169 955 DVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEAINENFNEI 1034
|
890
....*....|
gi 1958755384 1818 KGLLCGGEQH 1827
Cdd:TIGR02169 1035 FAELSGGTGE 1044
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
751-1631 |
3.41e-13 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 75.78 E-value: 3.41e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 751 EREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQelsqktqela 830
Cdd:pfam02463 174 ALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQ---------- 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 831 qktaegqemlnqmEELREKLERRDSSLQSAEKEKnlltEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTV 910
Cdd:pfam02463 244 -------------ELLRDEQEEIESSKQEIEKEE----EKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLE 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 911 NMNIDTQEQLLNALESLKQHQETINMLKMKATEEMSDHLPIKGREGSSDEVEQKLDGIDEENLLAESAHTVVGSGEDHGE 990
Cdd:pfam02463 307 RRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERL 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 991 TEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRA 1070
Cdd:pfam02463 387 SSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELE 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1071 HERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLEN-LQNEFRNQALALERVETERLELAQKLHENYEKMES 1149
Cdd:pfam02463 467 LKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKvLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAIS 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1150 ITKERNDLKELQESFEIEKKQLKEYAREMESAGLQT---KEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKT 1226
Cdd:pfam02463 547 TAVIVEVSATADEVEERQKLVRALTELPLGARKLRLlipKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVE 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1227 NPASQGETPVPREQELLPDAEEARASAEKGSELEPVEEHSRTAHSLTTEGIEMEILALTKKLEESQKEISC-LTKERSDL 1305
Cdd:pfam02463 627 GILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRqLEIKKKEQ 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1306 RRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQE 1385
Cdd:pfam02463 707 REKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKL 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1386 LCEKQEQLNIKETSEVQGKMSELDHIRALLLTKDSALQSVESdrlrlNKQLEESQEEIKILIKEREELRRAQEALHVERE 1465
Cdd:pfam02463 787 KVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEE-----KIKEEELEELALELKEEQKLEKLAEEELERLEE 861
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1466 QQQESIKEISTRLQELQDKEYEYLVMKSLNETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERD 1545
Cdd:pfam02463 862 EITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELL 941
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1546 ELRSVEErltadrDQLKKSLEETITKNQELQEKGHQLSQVKADLREtmdQMEQLKEQLEAQNSTLESIEIEKLKLTQQLN 1625
Cdd:pfam02463 942 LEEADEK------EKEENNKEEEEERNKRLLLAKEELGKVNLMAIE---EFEEKEERYNKDELEKERLEEEKKKLIRAII 1012
|
....*.
gi 1958755384 1626 ENLKEM 1631
Cdd:pfam02463 1013 EETCQR 1018
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1415-2009 |
4.28e-13 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 75.06 E-value: 4.28e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1415 LLTKDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEYLVMKSL 1494
Cdd:TIGR04523 147 IKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQ 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1495 NETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQ- 1573
Cdd:TIGR04523 227 NNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEq 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1574 --------ELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKIMD 1645
Cdd:TIGR04523 307 dwnkelksELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEI 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1646 EALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSDMN-------MELERANTRLQEK 1718
Cdd:TIGR04523 387 KNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTnqdsvkeLIIKNLDNTRESL 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1719 VQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLNLAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQLKDS 1798
Cdd:TIGR04523 467 ETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDE 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1799 LREAKFKAHQNYEETVqygkgllcggeqhctgrLREKCLRIEKLLKRYSEMANDYEclnRFSLDLEKETKTQKELSVTIK 1878
Cdd:TIGR04523 547 LNKDDFELKKENLEKE-----------------IDEKNKEIEELKQTQKSLKKKQE---EKQELIDQKEKEKKDLIKEIE 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1879 TKLSLPYTQTKEIEKLLTANQRCSMEFHRILKKLKYVLSYITRIKEEQHEFINKFEMAfiqeVEKQNELQIKIQSLSQTS 1958
Cdd:TIGR04523 607 EKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEI----IKKIKESKTKIDDIIELM 682
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 1958755384 1959 NipsrdsqsKLSQEMDLHIEE-ILKDFSENDFLTIKTEVKQVLSNRKEITEF 2009
Cdd:TIGR04523 683 K--------DWLKELSLHYKKyITRMIRIKDLPKLEEKYKEIEKELKKLDEF 726
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1040-1664 |
4.48e-13 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 75.08 E-value: 4.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1040 RILRDELKRQQEIAAQ-EKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLENLQNE 1118
Cdd:PRK02224 180 RVLSDQRGSLDQLKAQiEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1119 FRNQALALERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKE 1198
Cdd:PRK02224 260 IEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQA 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1199 YQEIIKELRGSISEKEAQASSTQDtgktnpasqgetpvpREQELLPDAEEARASAEKGSElepveehsrtahslTTEGIE 1278
Cdd:PRK02224 340 HNEEAESLREDADDLEERAEELRE---------------EAAELESELEEAREAVEDRRE--------------EIEELE 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1279 MEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDaRRTLANHLETEEELSLARCCLKEQENKIDSLIVSL 1358
Cdd:PRK02224 391 EEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEAT-LRTARERVEEAEALLEAGKCPECGQPVEGSPHVET 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1359 ----SQKEAELSSVRVQLEVTTGELERKVQELCEKQEQlnikeTSEVQGKMSELDHIRALLLTKDSalqSVESDRLRLnk 1434
Cdd:PRK02224 470 ieedRERVEELEAELEDLEEEVEEVEERLERAEDLVEA-----EDRIERLEERREDLEELIAERRE---TIEEKRERA-- 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1435 qlEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEyeylvmkslnetqgnkcedlnQQLEAQKS 1514
Cdd:PRK02224 540 --EELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERI---------------------ESLERIRT 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1515 SLEKVEmqnvNLTQRLNETLEEMKSVAKERDELRsveERLTADRDQlKKSLEETITKN--QELQEKGHQLSQVKADLRET 1592
Cdd:PRK02224 597 LLAAIA----DAEDEIERLREKREALAELNDERR---ERLAEKRER-KRELEAEFDEAriEEAREDKERAEEYLEQVEEK 668
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958755384 1593 MDQMEQLKEQLEAQNSTLESiEIEKLkltqqlnenlkemtlvakenddlkimdEALREERDQLRESLRQTEA 1664
Cdd:PRK02224 669 LDELREERDDLQAEIGAVEN-ELEEL---------------------------EELRERREALENRVEALEA 712
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1447-1754 |
4.77e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.97 E-value: 4.77e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1447 IKEREELRRAQEALHvEREQQQESIKEISTRLQELQDKEyeylvmkslnetqgnkcEDLNQQLEAQKSSLEKVEMQNVNL 1526
Cdd:COG1196 218 LKEELKELEAELLLL-KLRELEAELEELEAELEELEAEL-----------------EELEAELAELEAELEELRLELEEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1527 TQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQLSQvkadlretmdQMEQLKEQLEAQ 1606
Cdd:COG1196 280 ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEE----------ELEELEEELEEA 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1607 NSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLR---ESLRQTEASDLEKQEKLRIAHLDLKEH 1683
Cdd:COG1196 350 EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAaqlEELEEAEEALLERLERLEEELEELEEA 429
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958755384 1684 QETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIE 1754
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
692-1149 |
8.12e-13 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 74.31 E-value: 8.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 692 ELEKRITDLQKELNKEVEEKE----TLQKEVHLLSELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQ 767
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREqareTRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 768 GLLEEIGNTKDDLAASQLSQrssdeecQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELR 847
Cdd:PRK02224 290 ELEEERDDLLAEAGLDDADA-------EAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELR 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 848 EKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKND-------LKQLQESLQTERDQLRSDIQD------TVNMNI 914
Cdd:PRK02224 363 EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDapvdlgnAEDFLEELREERDELREREAEleatlrTARERV 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 915 DTQEQLLNA--------------------------------LESLKQHQETIN-----MLKMKATEEMSDHLPIKgREGS 957
Cdd:PRK02224 443 EEAEALLEAgkcpecgqpvegsphvetieedrerveeleaeLEDLEEEVEEVEerlerAEDLVEAEDRIERLEER-REDL 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 958 SDEVEQKLDGIDEENLLAESAHTVVGSGEDHGETEEQR------KIDSLLQENSRLQQTLESIIAEKEQLKmDLKENIEM 1031
Cdd:PRK02224 522 EELIAERRETIEEKRERAEELRERAAELEAEAEEKREAaaeaeeEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAA 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1032 SVENQEELRILRDELKRQQEIAAQEKDHVTEKSE---ELSRAH--ERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQ 1106
Cdd:PRK02224 601 IADAEDEIERLREKREALAELNDERRERLAEKRErkrELEAEFdeARIEEAREDKERAEEYLEQVEEKLDELREERDDLQ 680
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 1958755384 1107 AKVTDLENLQNEFRNQALALERVEtERLELAQKLHENYEKMES 1149
Cdd:PRK02224 681 AEIGAVENELEELEELRERREALE-NRVEALEALYDEAEELES 722
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
594-1423 |
8.61e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 74.33 E-value: 8.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 594 ATEDLKQAMRTLSDLDTVALDAKRESAFLRSENLElKERINELSDSCKQMEnGIQMYQRQLEAKKQVQAdLEKELQLAFQ 673
Cdd:TIGR02169 175 ALEELEEVEENIERLDLIIDEKRQQLERLRREREK-AERYQALLKEKREYE-GYELLKEKEALERQKEA-IERQLASLEE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 674 EISKLSALVDGKGLLSNlELEKRITDLQKELNKEVEEKE-TLQKEVH-LLSELKSLPSEVETLRRELHEKSEELCVITTE 751
Cdd:TIGR02169 252 ELEKLTEEISELEKRLE-EIEQLLEELNKKIKDLGEEEQlRVKEKIGeLEAEIASLERSIAEKERELEDAEERLAKLEAE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 752 REKLFSEMAHKDSRIQ-------GLLEEIGNTKDDLAASQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQ 824
Cdd:TIGR02169 331 IDKLLAEIEELEREIEeerkrrdKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDR 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 825 KTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLrs 904
Cdd:TIGR02169 411 LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKL-- 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 905 diqdtvnmnidtQEQLLNALESLKQHQETINmlKMKATEEMSDhlpiKGREGSSDEVEQkLDGIDEENLLA-ESA----- 978
Cdd:TIGR02169 489 ------------QRELAEAEAQARASEERVR--GGRAVEEVLK----ASIQGVHGTVAQ-LGSVGERYATAiEVAagnrl 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 979 -HTVVGSGEDHGETEE---QRKID--SLLQENS-RLQQTLESIIAEKEQLK--MDLKENIE-------------MSVENQ 1036
Cdd:TIGR02169 550 nNVVVEDDAVAKEAIEllkRRKAGraTFLPLNKmRDERRDLSILSEDGVIGfaVDLVEFDPkyepafkyvfgdtLVVEDI 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1037 EELRILRDE-----------------------LKRQQEIAAQEKdhvteksEELSRAHERLAEIEEKLKEKNQKLQETQQ 1093
Cdd:TIGR02169 630 EAARRLMGKyrmvtlegelfeksgamtggsraPRGGILFSRSEP-------AELQRLRERLEGLKRELSSLQSELRRIEN 702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1094 QLVSIQEAMSEMQAKVTDLEN----LQNEFRNQALALERVETERLELAQKLHENYEKMESITKErndLKELQESFEIEKK 1169
Cdd:TIGR02169 703 RLDELSQELSDASRKIGEIEKeieqLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEAR---IEELEEDLHKLEE 779
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1170 QLKEYAREMESAGLQTKEQLniahanLKEYQEIIKELRGSISEKEAQASStqdtgKTNPASQGETPVPREQELLPDAEEA 1249
Cdd:TIGR02169 780 ALNDLEARLSHSRIPEIQAE------LSKLEEEVSRIEARLREIEQKLNR-----LTLEKEYLEKEIQELQEQRIDLKEQ 848
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1250 RASAEKgselepveehsrtahslTTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKdDARRTLAN 1329
Cdd:TIGR02169 849 IKSIEK-----------------EIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELE-RKIEELEA 910
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1330 HLETEE----ELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRvQLEVTTGELERKVQELcEKQEQLNIKETSEVQGKM 1405
Cdd:TIGR02169 911 QIEKKRkrlsELKAKLEALEEELSEIEDPKGEDEEIPEEELSLE-DVQAELQRVEEEIRAL-EPVNMLAIQEYEEVLKRL 988
|
890
....*....|....*...
gi 1958755384 1406 SELDHIRALLLTKDSALQ 1423
Cdd:TIGR02169 989 DELKEKRAKLEEERKAIL 1006
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1435-1750 |
1.03e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 1.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1435 QLEESQEEIKiliKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEYlvmkslnetqgnkcEDLNQQLEAQKS 1514
Cdd:COG1196 233 KLRELEAELE---ELEAELEELEAELEELEAELAELEAELEELRLELEELELEL--------------EEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1515 SLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEkghQLSQVKADLRETMD 1594
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEA---ELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1595 QMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLR 1674
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958755384 1675 IAHLDLKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLAL 1750
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV 528
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
997-1707 |
1.54e-12 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 73.41 E-value: 1.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 997 IDSLLQENSRLQQTLESIIAEKEQLKM-----DLKENIEMSVENQEELRILRDELK--RQQEIAAQEKDHVTEKSEELSR 1069
Cdd:COG4913 227 ADALVEHFDDLERAHEALEDAREQIELlepirELAERYAAARERLAELEYLRAALRlwFAQRRLELLEAELEELRAELAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1070 AHERLAEIEEKLKEKNQKLQETQQQLvsiqeamseMQAKVTDLENLQNEFRNQALALERVETERLELAQKLH----ENYE 1145
Cdd:COG4913 307 LEAELERLEARLDALREELDELEAQI---------RGNGGDRLEQLEREIERLERELEERERRRARLEALLAalglPLPA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1146 KMESITKERNDLKELQESFEIEKKQLKEYAREMESAglqtKEQLNIAHANLKEYQEIIKELRGSISEKEAQASS--TQDT 1223
Cdd:COG4913 378 SAEEFAALRAEAAALLEALEEELEALEEALAEAEAA----LRDLRRELRELEAEIASLERRKSNIPARLLALRDalAEAL 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1224 GKTnpasqgETPVPREQELL---PDAEEARASAEK--GSE--------------LEPVEEHsRTAHSLTTEGIEMEILA- 1283
Cdd:COG4913 454 GLD------EAELPFVGELIevrPEEERWRGAIERvlGGFaltllvppehyaaaLRWVNRL-HLRGRLVYERVRTGLPDp 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1284 ---------LTKKLE--------------ESQKEISCLTKERsDLRRTQEALQVEC-------AQLKDDARRTLANHL-- 1331
Cdd:COG4913 527 erprldpdsLAGKLDfkphpfrawleaelGRRFDYVCVDSPE-ELRRHPRAITRAGqvkgngtRHEKDDRRRIRSRYVlg 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1332 -ETEEELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRVQLEvttgeLERKVQELCEkqEQLNIKET-SEVQGKMSELD 1409
Cdd:COG4913 606 fDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERRE-----ALQRLAEYSW--DEIDVASAeREIAELEAELE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1410 HIRAllltkdsalqsvESDRLR-LNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEY 1488
Cdd:COG4913 679 RLDA------------SSDDLAaLEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLE 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1489 LVMK--------SLNETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNE-----------TLEEMKSVAKERDELRs 1549
Cdd:COG4913 747 LRALleerfaaaLGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNRewpaetadldaDLESLPEYLALLDRLE- 825
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1550 vEERLTADRDQLKKSLEEtitknQELQEKGHQLSQVKADLRETMDQMEQLkeqleaqNSTLESIEieklkltqqLNENlK 1629
Cdd:COG4913 826 -EDGLPEYEERFKELLNE-----NSIEFVADLLSKLRRAIREIKERIDPL-------NDSLKRIP---------FGPG-R 882
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755384 1630 EMTLVAKENddlkiMDEALREERDQLRESLRQTEASDLEKQEKlriahldlkeHQETIERLMGSVAKRTEEVSDMNME 1707
Cdd:COG4913 883 YLRLEARPR-----PDPEVREFRQELRAVTSGASLFDEELSEA----------RFAALKRLIERLRSEEEESDRRWRA 945
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
513-1171 |
3.12e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.28 E-value: 3.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 513 LVLDYEQLRRENEDLKLKLKEKNELEEFEFLEQREEKDQENELSSKVEllkEKEDQIKELQryidaqksettktdlsyss 592
Cdd:COG1196 230 LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELE---ELELELEEAQ------------------- 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 593 eatEDLKQAMRTLSDLDtvaldakRESAFLRSENLELKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAF 672
Cdd:COG1196 288 ---AEEYELLAELARLE-------QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 673 QEISKlsalvdgkgllsnlELEKRITDLQKELNKEVEEKETLQKEVHLLSELKSLPSEVETLRRELHEKSEelcvittER 752
Cdd:COG1196 358 AELAE--------------AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE-------RL 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 753 EKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQK 832
Cdd:COG1196 417 ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 833 TAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNm 912
Cdd:COG1196 497 LEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAT- 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 913 nidtqEQLLNALESLKQHQETINMLKMKATEEMSDHLPIKGREGSSDEVEQKLDGIDEENLLAESAHTVVGSGEDHGETE 992
Cdd:COG1196 576 -----FLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVT 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 993 EQRKIDSLLQENSRLQ--QTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRA 1070
Cdd:COG1196 651 LEGEGGSAGGSLTGGSrrELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQL 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1071 HERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLENlqnefRNQAL------ALErvetERLELAQKLHENY 1144
Cdd:COG1196 731 EAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLER-----EIEALgpvnllAIE----EYEELEERYDFLS 801
|
650 660
....*....|....*....|....*..
gi 1958755384 1145 EKMESITKERNDLKELQESFEIEKKQL 1171
Cdd:COG1196 802 EQREDLEEARETLEEAIEEIDRETRER 828
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
518-1180 |
4.06e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 72.48 E-value: 4.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 518 EQLRRENEDLKLKLKEKNELEEFEFLEQREEKDQENELSSKVELLKEKEDQIK--ELQRYIDAQKSETTKTDLSYSSEAT 595
Cdd:PTZ00121 1131 EEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKaeEVRKAEELRKAEDARKAEAARKAEE 1210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 596 EDLKQAMRTLSDLDTVALDAKRESAFLRSENLELKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAfQEI 675
Cdd:PTZ00121 1211 ERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKA-EEK 1289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 676 SKLSALVDGKGLLSNLELEKRITDLQK--ELNKEVEEKETLQKEVHLLSELKSLPSEVETLRRELHEKSEELCVITTERE 753
Cdd:PTZ00121 1290 KKADEAKKAEEKKKADEAKKKAEEAKKadEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAA 1369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 754 KLFSEMAHKDS-RIQGLLEEIGNTKDDLAASQLSQRSSDE--ECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELA 830
Cdd:PTZ00121 1370 EKKKEEAKKKAdAAKKKAEEKKKADEAKKKAEEDKKKADElkKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEA 1449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 831 QKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNllTEKLQQTLEEVRaltqEKNDLKQLQESLQTERDQLRSDIQDTV 910
Cdd:PTZ00121 1450 KKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKK--ADEAKKKAEEAK----KKADEAKKAAEAKKKADEAKKAEEAKK 1523
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 911 NMNIDTQEQLLNAlESLKQHQETINMLKMKATEEMSDHLPIKGREGSSDEVEQKLDGIDEENLLAESAHTVVGSGEDHGE 990
Cdd:PTZ00121 1524 ADEAKKAEEAKKA-DEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYE 1602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 991 TEEQRKIDSLLQENSrlqqtlESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRA 1070
Cdd:PTZ00121 1603 EEKKMKAEEAKKAEE------AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKK 1676
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1071 HERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLENLQNEFRNQALALErveterlELAQKLHENYEKMESI 1150
Cdd:PTZ00121 1677 AEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAE-------EAKKEAEEDKKKAEEA 1749
|
650 660 670
....*....|....*....|....*....|
gi 1958755384 1151 TKERNDLKELQESFEIEKKQLKEYAREMES 1180
Cdd:PTZ00121 1750 KKDEEEKKKIAHLKKEEEKKAEEIRKEKEA 1779
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1143-1987 |
5.18e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 72.10 E-value: 5.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1143 NYEKMESITKERNDLKELQESFEI-EKKQLKEYAREMESAGLQTKEQLNIAHANLkEYQEIIKELRGSISEKE---AQAS 1218
Cdd:PTZ00121 1025 NIEKIEELTEYGNNDDVLKEKDIIdEDIDGNHEGKAEAKAHVGQDEGLKPSYKDF-DFDAKEDNRADEATEEAfgkAEEA 1103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1219 STQDTGKTNPASQGETPVPREQELlPDAEEARASAE--KGSELEPVEEHSRTAHSLTTEGIEMEILAL----TKKLEESQ 1292
Cdd:PTZ00121 1104 KKTETGKAEEARKAEEAKKKAEDA-RKAEEARKAEDarKAEEARKAEDAKRVEIARKAEDARKAEEARkaedAKKAEAAR 1182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1293 KEISclTKERSDLRRTQEALQVECAQLKDDARRtlANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRVQL 1372
Cdd:PTZ00121 1183 KAEE--VRKAEELRKAEDARKAEAARKAEEERK--AEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFE 1258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1373 EVTTGELERKVQ----ELCEKQEQLNIKETSEVQGKMSELDHIRALLLTKDSALQSVESDRLRlnKQLEESQEEIKILIK 1448
Cdd:PTZ00121 1259 EARMAHFARRQAaikaEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAK--KKAEEAKKKADAAKK 1336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1449 EREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEylvMKSLNETQGNKCEDLNQQLEAQKSSLE-KVEMQNVNLT 1527
Cdd:PTZ00121 1337 KAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE---AKKKADAAKKKAEEKKKADEAKKKAEEdKKKADELKKA 1413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1528 QRLNETLEEMKSVAKERDELRSVEERLTADR--DQLKKSLEETiTKNQELQEKGHQLSQV-----KADLRETMDQMEQLK 1600
Cdd:PTZ00121 1414 AAAKKKADEAKKKAEEKKKADEAKKKAEEAKkaDEAKKKAEEA-KKAEEAKKKAEEAKKAdeakkKAEEAKKADEAKKKA 1492
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1601 EQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEasDLEKQEKLRIAHLDL 1680
Cdd:PTZ00121 1493 EEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAE--ELKKAEEKKKAEEAK 1570
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1681 KEHQETIERLmgsvaKRTEEVSDMNMELERANTRLQEKVQELKASELQLL-KSKVEAGETKK--QLKEQGLALSKIEMEN 1757
Cdd:PTZ00121 1571 KAEEDKNMAL-----RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAeEAKIKAEELKKaeEEKKKVEQLKKKEAEE 1645
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1758 LNLAQQIHQNLEEMK-----SISKERDDLKRMEEILRMEKDQLKDSLREAKFKAHQNYEETVQYGKGLLCGGEQHCTGRL 1832
Cdd:PTZ00121 1646 KKKAEELKKAEEENKikaaeEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAE 1725
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1833 REKCLRIEKLLKRYSEMANDYECLNRfslDLEKETKTQKELSVTIKTKLSLPYTQTKEI-EKLLTANQRCSMEFHRILKK 1911
Cdd:PTZ00121 1726 EENKIKAEEAKKEAEEDKKKAEEAKK---DEEEKKKIAHLKKEEEKKAEEIRKEKEAVIeEELDEEDEKRRMEVDKKIKD 1802
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1912 LKYVLSYITRIKEEQHEFINKFEMAFIQEVEK--------QNELQIKIQSLSQTSNIPSRD--SQSKLSQEMDLhieeiL 1981
Cdd:PTZ00121 1803 IFDNFANIIEGGKEGNLVINDSKEMEDSAIKEvadsknmqLEEADAFEKHKFNKNNENGEDgnKEADFNKEKDL-----K 1877
|
....*.
gi 1958755384 1982 KDFSEN 1987
Cdd:PTZ00121 1878 EDDEEE 1883
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
986-1796 |
9.16e-12 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 71.16 E-value: 9.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 986 EDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSE 1065
Cdd:pfam02463 200 LKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1066 ELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVtdlENLQNEFRNQALALERVETERLELAQKLHENYE 1145
Cdd:pfam02463 280 EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEK---KKAEKELKKEKEEIEELEKELKELEIKREAEEE 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1146 KMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNI-------AHANLKEYQEIIKELRGSISEKEAQAS 1218
Cdd:pfam02463 357 EEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEeekeaqlLLELARQLEDLLKEEKKEELEILEEEE 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1219 STQDTGKTNPASQGETPVPREQELLPDAEEARASAEKGSELEPVEEHsRTAHSLTTEGIEMEILALTKKLEESQKEISCL 1298
Cdd:pfam02463 437 ESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQ-EQLELLLSRQKLEERSQKESKARSGLKVLLAL 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1299 TKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQEN-KIDSLIVSLSQKEAELSSVRVQLEVTTG 1377
Cdd:pfam02463 516 IKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLvRALTELPLGARKLRLLIPKLKLPLKSIA 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1378 ELERKVQELCEKQEQLNIKETSEVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRaq 1457
Cdd:pfam02463 596 VLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTK-- 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1458 eALHVEREQQQESIKEISTRLQELQDKEYEYLVMKSLNETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEM 1537
Cdd:pfam02463 674 -ELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEE 752
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1538 KSVAKERDELRSVEERLTADRDQLKKSLEETITKNQElQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEK 1617
Cdd:pfam02463 753 EKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVE-EEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIK 831
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1618 LKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQeKLRIAHLDLKEHQETIERLMGSVAKR 1697
Cdd:pfam02463 832 EEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKL-KDELESKEEKEKEEKKELEEESQKLN 910
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1698 TEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKqLKEQGLALSKIEMENLNLAQQIHQNLEEMKSISKE 1777
Cdd:pfam02463 911 LLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENN-KEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEER 989
|
810
....*....|....*....
gi 1958755384 1778 RDDLKRMEEILRMEKDQLK 1796
Cdd:pfam02463 990 YNKDELEKERLEEEKKKLI 1008
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
694-1214 |
9.48e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.86 E-value: 9.48e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 694 EKRITDLQKELNKEVEEKET-LQKEVHLLSELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEmahkdsriqglLEE 772
Cdd:PRK03918 164 YKNLGEVIKEIKRRIERLEKfIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKE-----------VKE 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 773 IGNTKDDLAASQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQ----------------ELSQKTQELAQKTAEG 836
Cdd:PRK03918 233 LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEkvkelkelkekaeeyiKLSEFYEEYLDELREI 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 837 QEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRAL---TQEKNDLKQLQESLQTERDQLRSDIQDTVNMN 913
Cdd:PRK03918 313 EKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELeerHELYEEAKAKKEELERLKKRLTGLTPEKLEKE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 914 IDTQEQLLNALE-SLKQHQETINMLKMKATEEMSDHLPIKGREGSSDEVEQKLDGIDEENLLAESAHTVVGSGEDHGETE 992
Cdd:PRK03918 393 LEELEKAKEEIEeEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 993 EQ--------RKIDSLLQENSRL---QQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEkdhvT 1061
Cdd:PRK03918 473 EKerklrkelRELEKVLKKESELiklKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKE----L 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1062 EKSEELSRaheRLAEIEEKLKEKNQKLQETQQQLVSIQ-EAMSEMQAKVTDLENLQNEF---RNQALALERVETERLELA 1137
Cdd:PRK03918 549 EKLEELKK---KLAELEKKLDELEEELAELLKELEELGfESVEELEERLKELEPFYNEYlelKDAEKELEREEKELKKLE 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1138 QKLHENYEKMESITKE----RNDLKELQESFEIEK-KQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISE 1212
Cdd:PRK03918 626 EELDKAFEELAETEKRleelRKELEELEKKYSEEEyEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE 705
|
..
gi 1958755384 1213 KE 1214
Cdd:PRK03918 706 RE 707
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
517-1373 |
2.48e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 69.62 E-value: 2.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 517 YEQLRRENEDLKLKLKEKNELEEFEFLEQREEKDQENELSSKVELLKEKEDQIKELQRYIDAQKSETTKTDLSYSSEATE 596
Cdd:pfam02463 175 LKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 597 DLKQAMrtlsdldtvaLDAKRESAFLRSENLELKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEIS 676
Cdd:pfam02463 255 SSKQEI----------EKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 677 KLS-ALVDGKGLLSNLELEKRITDLQKELNKEVEEKETLQKEvhllsELKSLPSEVETLRRELHEKSEELCVITTEREKL 755
Cdd:pfam02463 325 KAEkELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQE-----KLEQLEEELLAKKKLESERLSSAAKLKEEELEL 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 756 FSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQALKSLHVELKhRQEEVLEESERVKQELSQKTQELAQKTAE 835
Cdd:pfam02463 400 KSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEE-KEELEKQELKLLKDELELKKSEDLLKETQ 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 836 GQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNID 915
Cdd:pfam02463 479 LVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATAD 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 916 TQEQLLNALESLKQHQETINMLKMKATEEMSDHLPIKGREGSSDEVEQKLDGIDEENLLAESAHTVVGSGEDHGETEEQR 995
Cdd:pfam02463 559 EVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLK 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 996 KIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLA 1075
Cdd:pfam02463 639 ESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLE 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1076 EIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLENLQNEFRNQALALERVETERLELAQKLHENYEKMESITKERN 1155
Cdd:pfam02463 719 AEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKA 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1156 DLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKTNPASQGETP 1235
Cdd:pfam02463 799 QEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEE 878
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1236 VPREQELLPDAEEARASAEKGSELEPVEEHSRTAHSLTTEgIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVE 1315
Cdd:pfam02463 879 LEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENE-IEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEE 957
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755384 1316 CAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRVQLE 1373
Cdd:pfam02463 958 EEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEET 1015
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1300-1816 |
7.06e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 67.76 E-value: 7.06e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1300 KERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSlIVSLSQKEAELSSVRVQLEVTTGEL 1379
Cdd:PRK02224 199 KEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREE-LETLEAEIEDLRETIAETEREREEL 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1380 ERKVQELCEKQEQLNiketsevqgkmSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEIkilikerEELRRAQEA 1459
Cdd:PRK02224 278 AEEVRDLRERLEELE-----------EERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRL-------EECRVAAQA 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1460 LHVEREQQQESIKEISTRLQELQDKEYEylvMKSLNETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKS 1539
Cdd:PRK02224 340 HNEEAESLREDADDLEERAEELREEAAE---LESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEE 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1540 VAKERDELRSVEERLTADRdqlkKSLEETITKNQELQE-----------KGHQLSQVKADLRETMDQMEQLKEQLEAQNS 1608
Cdd:PRK02224 417 LREERDELREREAELEATL----RTARERVEEAEALLEagkcpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEEVE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1609 TLES--IEIEKLKLTQQLNENLKE-MTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQE 1685
Cdd:PRK02224 493 EVEErlERAEDLVEAEDRIERLEErREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEARE 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1686 TIERLMGSVAKRTEEVSDMNM---------ELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKE--QGLALSKIE 1754
Cdd:PRK02224 573 EVAELNSKLAELKERIESLERirtllaaiaDAEDEIERLREKREALAELNDERRERLAEKRERKRELEAefDEARIEEAR 652
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958755384 1755 MENLNLAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQLkDSLREakfkAHQNYEETVQY 1816
Cdd:PRK02224 653 EDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEEL-EELRE----RREALENRVEA 709
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1344-1943 |
7.82e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.78 E-value: 7.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1344 LKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERkVQELCEKQEQLNiKETSEVQGKMSELD----HIRALLLTKD 1419
Cdd:PRK03918 195 IKEKEKELEEVLREINEISSELPELREELEKLEKEVKE-LEELKEEIEELE-KELESLEGSKRKLEekirELEERIEELK 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1420 SALQSVESDRLRLnKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEyeylvmkslnetqg 1499
Cdd:PRK03918 273 KEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKE-------------- 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1500 NKCEDLNQQLEAQKSSLEKVEmQNVNLTQRLNETLEEMKSVAKERDELRSveERLTADRDQLKKSLEETITKNQELQEKG 1579
Cdd:PRK03918 338 ERLEELKKKLKELEKRLEELE-ERHELYEEAKAKKEELERLKKRLTGLTP--EKLEKELEELEKAKEEIEEEISKITARI 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1580 HQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLkltqqLNENLKEMTLVAKEnddLKIMDEALREerdqLRESL 1659
Cdd:PRK03918 415 GELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKEL-----LEEYTAELKRIEKE---LKEIEEKERK----LRKEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1660 RQTEaSDLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELK--ASELQLLKSKVEAG 1737
Cdd:PRK03918 483 RELE-KVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKkeLEKLEELKKKLAEL 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1738 ETKKQLKEQGLA--LSKIEMENLNLAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQLKDSLREAKfKAHQNYEETvq 1815
Cdd:PRK03918 562 EKKLDELEEELAelLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELD-KAFEELAET-- 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1816 ygkgllcggeqhcTGRLREKCLRIEKLLKRYSE-----MANDYECLNRFSLDLEKETKTQKELSVTIKTKLSLPYTQTKE 1890
Cdd:PRK03918 639 -------------EKRLEELRKELEELEKKYSEeeyeeLREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE 705
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 1958755384 1891 IEKlltanqrcsmeFHRILKKLKYVLSYITRIKEEQHEFINKFEMAFIQEVEK 1943
Cdd:PRK03918 706 REK-----------AKKELEKLEKALERVEELREKVKKYKALLKERALSKVGE 747
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1026-1799 |
1.49e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 67.07 E-value: 1.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1026 KENIEMSVEN-QEELRILRDELKRQQEIAAQEKDHVTE-------KSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVS 1097
Cdd:pfam15921 73 KEHIERVLEEySHQVKDLQRRLNESNELHEKQKFYLRQsvidlqtKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1098 IQEAMSEMQAKVTDLENLQ-NEFRNQALALERVETERLEL--------AQKLHEnYEKMESI------TKERNDLKELQE 1162
Cdd:pfam15921 153 ELEAAKCLKEDMLEDSNTQiEQLRKMMLSHEGVLQEIRSIlvdfeeasGKKIYE-HDSMSTMhfrslgSAISKILRELDT 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1163 SFEIEKKQLKEYAREMESAGLQTKEQLNIAhanLKEYQEIIKELrgsISEKEAQAsstqdTGKTNPASQGETPVPREQEL 1242
Cdd:pfam15921 232 EISYLKGRIFPVEDQLEALKSESQNKIELL---LQQHQDRIEQL---ISEHEVEI-----TGLTEKASSARSQANSIQSQ 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1243 LPDAEEaRASAEKGSELEPVEEHSRTAHSLTTEGIEMEILaLTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDD 1322
Cdd:pfam15921 301 LEIIQE-QARNQNSMYMRQLSDLESTVSQLRSELREAKRM-YEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQ 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1323 ARRTLANHLETEEELSLArcclKEQENKI------DSLIVSLSQKEAELSSVRVQ-LEVTTGELERKVQELCEKQeqlni 1395
Cdd:pfam15921 379 LQKLLADLHKREKELSLE----KEQNKRLwdrdtgNSITIDHLRRELDDRNMEVQrLEALLKAMKSECQGQMERQ----- 449
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1396 keTSEVQGKMSELDHIRAL---LLTKDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQEsik 1472
Cdd:pfam15921 450 --MAAIQGKNESLEKVSSLtaqLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRS--- 524
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1473 EISTRLQELQDKEYEYLVMKSLNetqgNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRsvee 1552
Cdd:pfam15921 525 RVDLKLQELQHLKNEGDHLRNVQ----TECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLE---- 596
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1553 rltadrdqlkkslEETITKNQELQEkghqlsqvkadLRETMDQMEQLKEQLEAQNSTLesiEIEKLKLTQQLNENLKEMT 1632
Cdd:pfam15921 597 -------------KEINDRRLELQE-----------FKILKDKKDAKIRELEARVSDL---ELEKVKLVNAGSERLRAVK 649
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1633 LVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHqetierlMGSVAKRTEEVSDMNMELERAN 1712
Cdd:pfam15921 650 DIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQ-------LKSAQSELEQTRNTLKSMEGSD 722
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1713 TRLQeKVQELKASELQLLKSKVEAGETKKQLKEQglALSKIEMENLNLAQQIHQNLEEMKSISKERDDLKRMEEILRMEK 1792
Cdd:pfam15921 723 GHAM-KVAMGMQKQITAKRGQIDALQSKIQFLEE--AMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQE 799
|
....*..
gi 1958755384 1793 DQLKDSL 1799
Cdd:pfam15921 800 RRLKEKV 806
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
691-1029 |
1.82e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.63 E-value: 1.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 691 LELEKRITDLQKELNKEVEEKETLQKEVHLLS---------------ELKSLPSEVETLRRELHEKSEELCVITTEREKL 755
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSqelsdasrkigeiekEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 756 FSEMAHKDSRIQGLLEEIGNTKDDLAAsqLSQRSSDEECQALKSLHVELKH---RQEEVLEESErvkQELSQKTQELAQK 832
Cdd:TIGR02169 757 KSELKELEARIEELEEDLHKLEEALND--LEARLSHSRIPEIQAELSKLEEevsRIEARLREIE---QKLNRLTLEKEYL 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 833 TAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQD---T 909
Cdd:TIGR02169 832 EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEleaQ 911
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 910 VNMNIDTQEQLLNALESLKQHQETINMLKMKATEEMSDHLPIKGREGSSDEVEQKLDGIDEENLLAESAHTVVgsGEDHG 989
Cdd:TIGR02169 912 IEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEV--LKRLD 989
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1958755384 990 ETEEQRkiDSLLQENSRLQQTLESIIAEKEQLKMDLKENI 1029
Cdd:TIGR02169 990 ELKEKR--AKLEEERKAILERIEEYEKKKREVFMEAFEAI 1027
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
628-1189 |
2.45e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 66.24 E-value: 2.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 628 ELKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSALVDG----KGLLSNLE----------- 692
Cdd:PRK03918 176 RRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEleelKEEIEELEkeleslegskr 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 693 -LEKRITDLQKELNKEVEEKETLQKEVHLLSELKSLPSEVETLRRELHEKSEELCVITTEREKL----------FSEMAH 761
Cdd:PRK03918 256 kLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLeeeingieerIKELEE 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 762 KDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLN 841
Cdd:PRK03918 336 KEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIG 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 842 QMEELREKLERRDSSLQSA-------------EKEKNLL---TEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSd 905
Cdd:PRK03918 416 ELKKEIKELKKAIEELKKAkgkcpvcgrelteEHRKELLeeyTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESE- 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 906 iqdtvnmnIDTQEQLLNALESLKQHQETINMLKMKATEEMSDHLPIKGREGSSdEVEQKLDGIDEENLLAESAHTVvgsg 985
Cdd:PRK03918 495 --------LIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKG-EIKSLKKELEKLEELKKKLAEL---- 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 986 edhgeteeQRKIDSLLQENSRLQQTLESIIAEK-EQLKMDLKEnIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKS 1064
Cdd:PRK03918 562 --------EKKLDELEEELAELLKELEELGFESvEELEERLKE-LEPFYNEYLELKDAEKELEREEKELKKLEEELDKAF 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1065 EELSRAHERLAEIEEKLKEKNQKLQEtqqqlvsiqEAMSEMQAKVTDLENLQNEFRNQALALERVETERLELAQKLHENY 1144
Cdd:PRK03918 633 EELAETEKRLEELRKELEELEKKYSE---------EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEEL 703
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 1958755384 1145 EKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQL 1189
Cdd:PRK03918 704 EEREKAKKELEKLEKALERVEELREKVKKYKALLKERALSKVGEI 748
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
515-1323 |
5.00e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 65.38 E-value: 5.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 515 LDYEQLRRENEDLKLKLKEKNELEEFEFLEQREEKDQENELSSKVELLKEKEDQIKELQR---YIDAQKSETTKTDLSYS 591
Cdd:pfam02463 188 LIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRdeqEEIESSKQEIEKEEEKL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 592 SEATEDLKQAMRTLSDLDTVALDAKRESAFLRSENLELKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLA 671
Cdd:pfam02463 268 AQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKEL 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 672 FQEISKLSALVDGKGLLSNLELEKRITDLQKELNKEVEEKETLQKEVHLLSELKSLPSEVETLRRELHEKSEELCVITTE 751
Cdd:pfam02463 348 EIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKE 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 752 REKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQ 831
Cdd:pfam02463 428 ELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARS 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 832 KTAEGQEMLNQMEELREKLERRDSSLQSAEKEK-------------NLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTE 898
Cdd:pfam02463 508 GLKVLLALIKDGVGGRIISAHGRLGDLGVAVENykvaistavivevSATADEVEERQKLVRALTELPLGARKLRLLIPKL 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 899 RDQLRSDIQDTVNMNIDTQEQLLNALES-LKQHQETINMLKMKATEEMSDHLPIKGREGSSDEVEQKLDGIDEENLLAES 977
Cdd:pfam02463 588 KLPLKSIAVLEIDPILNLAQLDKATLEAdEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKAS 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 978 ahTVVGSGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEK 1057
Cdd:pfam02463 668 --LSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKI 745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1058 DhvtEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLENLQNEFRNQALALERVETERLELA 1137
Cdd:pfam02463 746 D---EEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQL 822
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1138 QKLHENYEKMESITKERNDLKELQESfEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQA 1217
Cdd:pfam02463 823 LIEQEEKIKEEELEELALELKEEQKL-EKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKE 901
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1218 SSTQDTGKTNPASQGETPVPREQELLPDAEEARASAEKgSELEPVEEHSRTAHSLTTEGIEMEILALTKKLEESQKEISC 1297
Cdd:pfam02463 902 LEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEE-LLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAI 980
|
810 820
....*....|....*....|....*.
gi 1958755384 1298 LTKERSDLRRTQEALQVECAQLKDDA 1323
Cdd:pfam02463 981 EEFEEKEERYNKDELEKERLEEEKKK 1006
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
789-1466 |
5.63e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 65.09 E-value: 5.63e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 789 SSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLT 868
Cdd:PRK03918 162 NAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 869 EKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRsdiqdtvnmNIDTQEQLLNALESLKQHQETINMLKMKATEEMSDh 948
Cdd:PRK03918 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIE---------ELEEKVKELKELKEKAEEYIKLSEFYEEYLDELRE- 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 949 lpIKGREGSsdeVEQKLDGIdeenllaesahtvvgsgedhgeteeQRKIDSLLQENSRLQQTLEsiiaEKEQLKMDLKEn 1028
Cdd:PRK03918 312 --IEKRLSR---LEEEINGI-------------------------EERIKELEEKEERLEELKK----KLKELEKRLEE- 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1029 IEMSVENQEELRILRDELKR-QQEIAAQEKDHVTEKSEELSRAHErlaEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQA 1107
Cdd:PRK03918 357 LEERHELYEEAKAKKEELERlKKRLTGLTPEKLEKELEELEKAKE---EIEEEISKITARIGELKKEIKELKKAIEELKK 433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1108 kvtdlenlqnefrnqalALERVETERLELAQklHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKE 1187
Cdd:PRK03918 434 -----------------AKGKCPVCGRELTE--EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESE 494
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1188 QLniahaNLKEYQEIIKELRGSISEKEAqasstqdtgktnpasqgetpvpreQELLPDAEEARASAEKGSELEpvEEHSR 1267
Cdd:PRK03918 495 LI-----KLKELAEQLKELEEKLKKYNL------------------------EELEKKAEEYEKLKEKLIKLK--GEIKS 543
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1268 TAHSLTtegiemEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQ 1347
Cdd:PRK03918 544 LKKELE------KLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELERE 617
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1348 ENKIDSLivslsqkEAELSSVRVQLEVTTGELERKVQELCEKQEQLNIKETSEVQGKMSELDHIRALLLTKDSALQSVES 1427
Cdd:PRK03918 618 EKELKKL-------EEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRRE 690
|
650 660 670
....*....|....*....|....*....|....*....
gi 1958755384 1428 DRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQ 1466
Cdd:PRK03918 691 EIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREK 729
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
518-1171 |
6.85e-10 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 65.10 E-value: 6.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 518 EQLRRENEDLKLKLkEKNELEEFEFLEQREEKDQENELSSKVELLKEKEDQIKELQRYIDAQKSETTKTDLSYSSEATED 597
Cdd:COG5022 782 RLRRLVDYELKWRL-FIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKR 860
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 598 LKqamrtLSDLDTVALDAKRESAFLRSENLELKE---RINELSDSCKQMENGIqmyqrqLEAKKQVQADLEKELQLAFQE 674
Cdd:COG5022 861 FS-----LLKKETIYLQSAQRVELAERQLQELKIdvkSISSLKLVNLELESEI------IELKKSLSSDLIENLEFKTEL 929
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 675 ISKLSALVDGK----GLLSNLELEKRITDLQ---KELNKEVEEKE-TLQKEVHLLSELKSLPSEVETLRRELHEKSEELC 746
Cdd:COG5022 930 IARLKKLLNNIdleeGPSIEYVKLPELNKLHeveSKLKETSEEYEdLLKKSTILVREGNKANSELKNFKKELAELSKQYG 1009
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 747 VItTEREKLFSEMAHKDSRIQGL---LEEIGNTKDDLAASQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELS 823
Cdd:COG5022 1010 AL-QESTKQLKELPVEVAELQSAskiISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLES 1088
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 824 QKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSA--EKEKNLLTEKLQQTLEevraltQEKNDLKQLQESLQTERDQ 901
Cdd:COG5022 1089 TENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLnlLQEISKFLSQLVNTLE------PVFQKLSVLQLELDGLFWE 1162
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 902 --LRSDIQDTVNMNIDTQEQLLNALESLKQH--QETINMLKMKATEEMSDHlpikgREGSSDEVEQKlDGIDEENLLAE- 976
Cdd:COG5022 1163 anLEALPSPPPFAALSEKRLYQSALYDEKSKlsSSEVNDLKNELIALFSKI-----FSGWPRGDKLK-KLISEGWVPTEy 1236
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 977 -SAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLK-ENIEMSVENQEELRILRDELKRQQeiAA 1054
Cdd:COG5022 1237 sTSLKGFNNLNKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINsLLQYINVGLFNALRTKASSLRWKS--AT 1314
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1055 QEKDHVTEKSE-----ELSRAHERLAEIEE--KLKEKNQKLQETQQQLVSIQEAMSEMQA-------KVTDLE-NLQNEF 1119
Cdd:COG5022 1315 EVNYNSEELDDwcrefEISDVDEELEELIQavKVLQLLKDDLNKLDELLDACYSLNPAEIqnlksryDPADKEnNLPKEI 1394
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 1958755384 1120 RNQALALERVETERLELAQKLhENYEKMESITKERNDLKELQESFEIEKKQL 1171
Cdd:COG5022 1395 LKKIEALLIKQELQLSLEGKD-ETEVHLSEIFSEEKSLISLDRNSIYKEEVL 1445
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1413-1630 |
8.43e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 63.24 E-value: 8.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1413 ALLLTKDSALQSVESDRLRlnKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEylVMK 1492
Cdd:COG4942 8 ALLLALAAAAQADAAAEAE--AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAA--LEA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1493 SLNETQGNKcEDLNQQLEAQKSSLEKV--EMQNVNLTQRLNETL--EEMKSVAKERDELRSVEERLTADRDQLKKSLEET 1568
Cdd:COG4942 84 ELAELEKEI-AELRAELEAQKEELAELlrALYRLGRQPPLALLLspEDFLDAVRRLQYLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958755384 1569 ITKNQELQEKGHQLSQVKADLREtmdQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKE 1630
Cdd:COG4942 163 AALRAELEAERAELEALLAELEE---ERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
992-1759 |
8.56e-10 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 64.59 E-value: 8.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 992 EEQRKIDSLLQENSRLQQTLESIIAEKEQLkmdlkenIEMSVENQE----------ELRILRDELKR-QQEIAAQEKdhV 1060
Cdd:COG3096 279 ERRELSERALELRRELFGARRQLAEEQYRL-------VEMARELEElsaresdleqDYQAASDHLNLvQTALRQQEK--I 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1061 TEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLENLQNEFRNQALALERVeTERLELAQKL 1140
Cdd:COG3096 350 ERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQA-VQALEKARAL 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1141 HEnyekMESITKErnDLKELQESFEIEKKQLKEYAREMEsaglqtkEQLNIAHANLKEYQEIIKELRGSISEKEAQASSt 1220
Cdd:COG3096 429 CG----LPDLTPE--NAEDYLAAFRAKEQQATEEVLELE-------QKLSVADAARRQFEKAYELVCKIAGEVERSQAW- 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1221 qdtgktnpasqgetpvPREQELLPDAEEARASAEKG-------SELEPVEEHSRTAHSLTTE-------------GIEME 1280
Cdd:COG3096 495 ----------------QTARELLRRYRSQQALAQRLqqlraqlAELEQRLRQQQNAERLLEEfcqrigqqldaaeELEEL 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1281 ILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLA-----NHLETEEELSLarcclkEQENKIDSLI 1355
Cdd:COG3096 559 LAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAaqdalERLREQSGEAL------ADSQEVTAAM 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1356 VSLSQKEAELSSVRVQLEVTTGELERKVQELC-----EKQEQLNIKET------SEVQGKMSELD--HIRALLLTKDSAL 1422
Cdd:COG3096 633 QQLLEREREATVERDELAARKQALESQIERLSqpggaEDPRLLALAERlggvllSEIYDDVTLEDapYFSALYGPARHAI 712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1423 qsVESDRLRLNKQL---EESQEEIKIL----------IKEREEL-------------------------RRAQE----AL 1460
Cdd:COG3096 713 --VVPDLSAVKEQLaglEDCPEDLYLIegdpdsfddsVFDAEELedavvvklsdrqwrysrfpevplfgRAAREkrleEL 790
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1461 HVEREQQQESIKEISTRLQELQ--DKEYEYLVMKSLNETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEmk 1538
Cdd:COG3096 791 RAERDELAEQYAKASFDVQKLQrlHQAFSQFVGGHLAVAFAPDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQ-- 868
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1539 svAKER-DELRSV--------EERLTADRDQLKKSLEETITKNQELQEKGHQLSQVK---ADLRETMDQMEQLKEQLEAQ 1606
Cdd:COG3096 869 --LKEQlQLLNKLlpqanllaDETLADRLEELREELDAAQEAQAFIQQHGKALAQLEplvAVLQSDPEQFEQLQADYLQA 946
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1607 NSTLESIEIEKLKLTQqlnenlkemtLVAKEN----DDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKE 1682
Cdd:COG3096 947 KEQQRRLKQQIFALSE----------VVQRRPhfsyEDAVGLLGENSDLNEKLRARLEQAEEARREAREQLRQAQAQYSQ 1016
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958755384 1683 HQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLN 1759
Cdd:COG3096 1017 YNQVLASLKSSRDAKQQTLQELEQELEELGVQADAEAEERARIRRDELHEELSQNRSRRSQLEKQLTRCEAEMDSLQ 1093
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
547-1210 |
8.60e-10 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 64.60 E-value: 8.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 547 EEKDQENELSSKVELLKEKEDQIKELQRYIDAQKSETTKTDLSYSSEATEDLKQAMRTLSDLdtvaldakresaflrSEN 626
Cdd:TIGR00618 184 MEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYL---------------TQK 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 627 LELKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLA-FQEISKLSALVDGKGLLSNLELEKRITDLQKELN 705
Cdd:TIGR00618 249 REAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAApLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLM 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 706 KEVEEKETLQKEVHLLSELKSLPSEVETLRRELHEKS---EELCVITTEREKLFSEMAHKDSRIQgLLEEIGNTKDDLAA 782
Cdd:TIGR00618 329 KRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATsirEISCQQHTLTQHIHTLQQQKTTLTQ-KLQSLCKELDILQR 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 783 SQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEK 862
Cdd:TIGR00618 408 EQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETR 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 863 EKNLLTEKLQQTLEEVRALTQEKNDLKQ-LQESLQTERDQLRsdIQDTVNMNIDTQEQLLNALESLKQHQETINMLKMKA 941
Cdd:TIGR00618 488 KKAVVLARLLELQEEPCPLCGSCIHPNPaRQDIDNPGPLTRR--MQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQM 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 942 TEEMSDHLPIKGREGSSDEVEQKLDGIDEE---NLLAESAHTVVGSGEDHGETEE-------QRKIDSLLQENSRLQQTL 1011
Cdd:TIGR00618 566 QEIQQSFSILTQCDNRSKEDIPNLQNITVRlqdLTEKLSEAEDMLACEQHALLRKlqpeqdlQDVRLHLQQCSQELALKL 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1012 ESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEiaAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQET 1091
Cdd:TIGR00618 646 TALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKM--QSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEI 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1092 QQQLVSIQeamSEMQAKVTDLENLQNEFRNQ--------ALALERVETERLELAQKLHENYEKMESITKERNDLKELQES 1163
Cdd:TIGR00618 724 ENASSSLG---SDLAAREDALNQSLKELMHQartvlkarTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHL 800
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 1958755384 1164 FEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSI 1210
Cdd:TIGR00618 801 LKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEI 847
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1018-1815 |
9.21e-10 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 64.43 E-value: 9.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1018 KEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAqekdhvtEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVS 1097
Cdd:pfam01576 21 QQKAESELKELEKKHQQLCEEKNALQEQLQAETELCA-------EAEEMRARLAARKQELEEILHELESRLEEEEERSQQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1098 IQEAMSEMQAKVTDLENL--QNEFRNQALALERVETErlelaqklhenyEKMESITKERNDLKELQESFEIEKKQLKEYA 1175
Cdd:pfam01576 94 LQNEKKKMQQHIQDLEEQldEEEAARQKLQLEKVTTE------------AKIKKLEEDILLLEDQNSKLSKERKLLEERI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1176 REMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEaqaSSTQDTGKTNPASQGETPVPREQ--ELLPDAEEARAS- 1252
Cdd:pfam01576 162 SEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEE---KGRQELEKAKRKLEGESTDLQEQiaELQAQIAELRAQl 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1253 AEKGSELEPV------EEHSRTAHSLTTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRT 1326
Cdd:pfam01576 239 AKKEEELQAAlarleeETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQ 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1327 LANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAE-LSSVRVQLEVTtgeleRKVQELCEKQEQLNIKETSEVQGKM 1405
Cdd:pfam01576 319 QELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQaLEELTEQLEQA-----KRNKANLEKAKQALESENAELQAEL 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1406 SELDHIRALLLTK----DSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQEL 1481
Cdd:pfam01576 394 RTLQQAKQDSEHKrkklEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDT 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1482 QDKEYEYLVMKSLNETQGNKCED----LNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTAD 1557
Cdd:pfam01576 474 QELLQEETRQKLNLSTRLRQLEDernsLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRE 553
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1558 RDQLKKSLEETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKE 1637
Cdd:pfam01576 554 LEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEARE 633
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1638 NDDLKI-MDEALREERDQLRESLRQTEASDLEKQEKL-------RIAHlDLKEHQETIERLMGSVAKRTEEVSDMNMELE 1709
Cdd:pfam01576 634 KETRALsLARALEEALEAKEELERTNKQLRAEMEDLVsskddvgKNVH-ELERSKRALEQQVEEMKTQLEELEDELQATE 712
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1710 RANTRLQEKVQELKASELQLLKSKVEAGETKKQL----------------KEQGLALS---KIEMENLNLAQQIH----- 1765
Cdd:pfam01576 713 DAKLRLEVNMQALKAQFERDLQARDEQGEEKRRQlvkqvreleaelederKQRAQAVAakkKLELDLKELEAQIDaankg 792
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|..
gi 1958755384 1766 --QNLEEMKSISKERDDLKRMEEILRMEKDQLKDSLREAKFKAHQNYEETVQ 1815
Cdd:pfam01576 793 reEAVKQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKKLKNLEAELLQ 844
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
600-1181 |
1.06e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 64.17 E-value: 1.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 600 QAMRTLSDLDtvaldakresAFLRSENLE---LKERINELSDsckQMENGIQMYQRQLEAKKQVQA-----DLEKELQLA 671
Cdd:COG4913 201 QSFKPIGDLD----------DFVREYMLEepdTFEAADALVE---HFDDLERAHEALEDAREQIELlepirELAERYAAA 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 672 FQEISKLSALVDG----KGLLSNLELEKRITDLQKELNKEVEEKETLQKEVhllselkslpSEVETLRRELHEKseelcv 747
Cdd:COG4913 268 RERLAELEYLRAAlrlwFAQRRLELLEAELEELRAELARLEAELERLEARL----------DALREELDELEAQ------ 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 748 ittereklfsEMAHKDSRIQGLLEEIGNTKDDLAasQLSQRSSDEEcQALKSLHVELKHRQEEVLEESERVKQELSQKTQ 827
Cdd:COG4913 332 ----------IRGNGGDRLEQLEREIERLERELE--ERERRRARLE-ALLAALGLPLPASAEEFAALRAEAAALLEALEE 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 828 ELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEV-RALTQEKNDLKQLQESLQTERDQlrSDI 906
Cdd:COG4913 399 ELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALaEALGLDEAELPFVGELIEVRPEE--ERW 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 907 QDTVNMNIDTQ-----------EQLLNALESLKQHQEtINMLKMKATEEmsDHLPIKGREGS------------SDEVEQ 963
Cdd:COG4913 477 RGAIERVLGGFaltllvppehyAAALRWVNRLHLRGR-LVYERVRTGLP--DPERPRLDPDSlagkldfkphpfRAWLEA 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 964 KLDGI-------DEENL-LAESAHTVVG---SGEDHGETEEQRKIDSLL---QENSRLQQTLESIIAEKEQLKMDLKENI 1029
Cdd:COG4913 554 ELGRRfdyvcvdSPEELrRHPRAITRAGqvkGNGTRHEKDDRRRIRSRYvlgFDNRAKLAALEAELAELEEELAEAEERL 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1030 EMSVENQEELRILRDELKRQQEIAAQEKDH---------VTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQE 1100
Cdd:COG4913 634 EALEAELDALQERREALQRLAEYSWDEIDVasaereiaeLEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKG 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1101 AMSEMQAKVTDLENLQNEFRNQALALErvETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMES 1180
Cdd:COG4913 714 EIGRLEKELEQAEEELDELQDRLEAAE--DLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELER 791
|
.
gi 1958755384 1181 A 1181
Cdd:COG4913 792 A 792
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
482-1083 |
1.16e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 1.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 482 LAEAEWSSATALLSEENLESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKEKNELEEFEFLEQREEKDQENELSSKVEL 561
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 562 LKEKEDQIKELQRYIDAQKsettktdlsysSEATEDLKQAMRTLSDLDTVALDAKRESAFLRSENLELKERINELSDSCK 641
Cdd:COG1196 328 LEEELEELEEELEELEEEL-----------EEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAA 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 642 QMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSALVDgkgllsnLELEKRITDLQKELNKEVEEKETLQKEVHLL 721
Cdd:COG1196 397 ELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE-------EEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 722 SELKSLPSEVETLRRELHEKSEELcvitterEKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQALKSLH 801
Cdd:COG1196 470 EEAALLEAALAELLEELAEAAARL-------LLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEA 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 802 VELKHRQEEVLEESERVKQelsqktqelaqktaegqemlnQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRAL 881
Cdd:COG1196 543 ALAAALQNIVVEDDEVAAA---------------------AIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAV 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 882 tqekndlkQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINmlkmKATEEMSDHLPIKGREGSSDEV 961
Cdd:COG1196 602 --------DLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR----EVTLEGEGGSAGGSLTGGSRRE 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 962 EQKLDGIDEENLLAESAhtvvgsgedhgetEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRI 1041
Cdd:COG1196 670 LLAALLEAEAELEELAE-------------RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREE 736
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 1958755384 1042 LRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKE 1083
Cdd:COG1196 737 LLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
792-1546 |
1.85e-09 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 63.45 E-value: 1.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 792 EECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKeknlLTEKL 871
Cdd:TIGR00618 187 AKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLK----KQQLL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 872 QQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNAleslkqhqeTINMLKMKATEEMSDHLPI 951
Cdd:TIGR00618 263 KQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHT---------ELQSKMRSRAKLLMKRAAH 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 952 KGREGSSDEVEQKLDGIDEENLLAESAHTVVGSGEDHG--ETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMD----L 1025
Cdd:TIGR00618 334 VKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREIScqQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREqatiD 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1026 KENIEMSVENQEELRiLRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEM 1105
Cdd:TIGR00618 414 TRTSAFRDLQGQLAH-AKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVV 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1106 QAKVTDLENLQNEFRNQALALERVETERLE-------LAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREM 1178
Cdd:TIGR00618 493 LARLLELQEEPCPLCGSCIHPNPARQDIDNpgpltrrMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSF 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1179 ESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKTNPASQGETPVPREQELLPDAEEARASAEKGSE 1258
Cdd:TIGR00618 573 SILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQ 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1259 LEPVEEHSRTAHSLTTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARR-------TLANHL 1331
Cdd:TIGR00618 653 LTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREfneienaSSSLGS 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1332 ETEEELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCEKQEQLnikETSEVQGKMSELDHI 1411
Cdd:TIGR00618 733 DLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLR---EEDTHLLKTLEAEIG 809
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1412 RALlltkDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYeylvm 1491
Cdd:TIGR00618 810 QEI----PSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNG----- 880
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*
gi 1958755384 1492 ksLNETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDE 1546
Cdd:TIGR00618 881 --INQIKIQFDGDALIKFLHEITLYANVRLANQSEGRFHGRYADSHVNARKYQGL 933
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
803-1684 |
2.26e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 63.21 E-value: 2.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 803 ELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELRekleRRDSslQSAEKEKNllteKLQQTLEEVRALT 882
Cdd:pfam15921 89 DLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIR----RRES--QSQEDLRN----QLQNTVHELEAAK 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 883 QEKNDLkqlQESLQTERDQLRSDIQdtvnmnidTQEQLLNALESLKQHQETINMLKMKATEEMSDhLPIKGREGSSDEVE 962
Cdd:pfam15921 159 CLKEDM---LEDSNTQIEQLRKMML--------SHEGVLQEIRSILVDFEEASGKKIYEHDSMST-MHFRSLGSAISKIL 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 963 QKLDgiDEENLLAESAHTVvgsgEDHGET---EEQRKIDSLLQENsrlQQTLESIIAEKEQLKMDLKENIEMSVEN---- 1035
Cdd:pfam15921 227 RELD--TEISYLKGRIFPV----EDQLEAlksESQNKIELLLQQH---QDRIEQLISEHEVEITGLTEKASSARSQansi 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1036 QEELRILRDELKRQQEIaaqekdHVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSiqeAMSEMQAKVTDLENL 1115
Cdd:pfam15921 298 QSQLEIIQEQARNQNSM------YMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVL---ANSELTEARTERDQF 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1116 QNEFRNQALALERveterleLAQKLHENyEKMESITKERNdlKELQESFEIEKKQLKEYAREMESAGLqtkeqlniahan 1195
Cdd:pfam15921 369 SQESGNLDDQLQK-------LLADLHKR-EKELSLEKEQN--KRLWDRDTGNSITIDHLRRELDDRNM------------ 426
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1196 lkEYQEIIKELRGSISEKEAQASstqdtgKTNPASQGEtpvpreQELLPDAEEARASAEKGSELEPVEEHSRTAHSLTTE 1275
Cdd:pfam15921 427 --EVQRLEALLKAMKSECQGQME------RQMAAIQGK------NESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLE 492
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1276 GIEMEILALTKKLEESQKEISCLTKERSDLRRtqealqvecaqlKDDARRTLANHLETEEELslarccLKEQENKIDSLI 1355
Cdd:pfam15921 493 SSERTVSDLTASLQEKERAIEATNAEITKLRS------------RVDLKLQELQHLKNEGDH------LRNVQTECEALK 554
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1356 VSLSQKEAELSSVRVQLEVTT---GELERKVQELCEKQEQLNiketSEVQGKMSELDHIRALLLTKDSALQSVESdrlrl 1432
Cdd:pfam15921 555 LQMAEKDKVIEILRQQIENMTqlvGQHGRTAGAMQVEKAQLE----KEINDRRLELQEFKILKDKKDAKIRELEA----- 625
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1433 nKQLEESQEEIKILIKEREELRRAQEAlhveREQQQESIKEISTRLQELQDKEYEYLVMKslnetqgnkcEDLNQQLEAQ 1512
Cdd:pfam15921 626 -RVSDLELEKVKLVNAGSERLRAVKDI----KQERDQLLNEVKTSRNELNSLSEDYEVLK----------RNFRNKSEEM 690
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1513 KSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSV----EERLTADRDQLkksleetitknQELQEKghqlsqvkad 1588
Cdd:pfam15921 691 ETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVamgmQKQITAKRGQI-----------DALQSK---------- 749
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1589 lretmdqMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQL-----RESLRQTE 1663
Cdd:pfam15921 750 -------IQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMevaldKASLQFAE 822
|
890 900
....*....|....*....|....*..
gi 1958755384 1664 ASD-LEKQE----KLRIAH-LDLKEHQ 1684
Cdd:pfam15921 823 CQDiIQRQEqesvRLKLQHtLDVKELQ 849
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
795-1177 |
6.58e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 61.32 E-value: 6.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 795 QALKSLHVELKHRQEEVlEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNL-------- 866
Cdd:COG4717 71 KELKELEEELKEAEEKE-EEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELaelperle 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 867 -LTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKMKATEEM 945
Cdd:COG4717 150 eLEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEEL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 946 SDHLPIKGREGSSDEVEQKL-----------------DGIDEENLLAESAHTVVG---------SGEDHGETEEQRKIDS 999
Cdd:COG4717 230 EQLENELEAAALEERLKEARlllliaaallallglggSLLSLILTIAGVLFLVLGllallflllAREKASLGKEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1000 LLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEiAAQEKDHVTEKSEELSRAH-------E 1072
Cdd:COG4717 310 LPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEE-ELQLEELEQEIAALLAEAGvedeeelR 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1073 RLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEmQAKVTDLENLQNEFRNQALALERVETERLELAQKLHENYEKMESItK 1152
Cdd:COG4717 389 AALEQAEEYQELKEELEELEEQLEELLGELEE-LLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQL-E 466
|
410 420
....*....|....*....|....*
gi 1958755384 1153 ERNDLKELQESFEIEKKQLKEYARE 1177
Cdd:COG4717 467 EDGELAELLQELEELKAELRELAEE 491
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1057-1801 |
6.68e-09 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 61.28 E-value: 6.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1057 KDHVTEKSEELSRAHERLAEIEEKLKE-KNQKLQETQQQLVSIQEAMSEMQAKVTDLENLQneFRNQALAlerveterLE 1135
Cdd:pfam05483 66 KDSDFENSEGLSRLYSKLYKEAEKIKKwKVSIEAELKQKENKLQENRKIIEAQRKAIQELQ--FENEKVS--------LK 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1136 LAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEA 1215
Cdd:pfam05483 136 LEEEIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHF 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1216 QASSTQDTGKTNPASQGETPVPREQELLPDAEEARASAEKGSELEPVEEHSRTAHSLTTEGIEMEilalTKKLEESQKEI 1295
Cdd:pfam05483 216 KLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQ----DENLKELIEKK 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1296 SCLTKERSDLRRTQEalqvecaqlkddarRTLANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRVQLEVT 1375
Cdd:pfam05483 292 DHLTKELEDIKMSLQ--------------RSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEAT 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1376 TGELE---RKVQELCEKQEQLNIKETSEVQGKMSELDHIRALLLTKDSALQsvesdrlRLNKQLEESQEeikiLIKEREE 1452
Cdd:pfam05483 358 TCSLEellRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELE-------ELKKILAEDEK----LLDEKKQ 426
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1453 LRRAQEALhveREQQQESIKEISTRLQELQDKEYEYLVMKSLNETQGNKCEDLnqqleaqKSSLEKVEMQNVNLTQRLNE 1532
Cdd:pfam05483 427 FEKIAEEL---KGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDL-------KTELEKEKLKNIELTAHCDK 496
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1533 TLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQLSQVKADLRETMDQM-EQLKEQLEAQNSTLE 1611
Cdd:pfam05483 497 LLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKgDEVKCKLDKSEENAR 576
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1612 SIEIEKLKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLM 1691
Cdd:pfam05483 577 SIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEII 656
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1692 GSVAKRTE--EVSDMNM--ELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLNLAQQIHQN 1767
Cdd:pfam05483 657 DNYQKEIEdkKISEEKLleEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQE 736
|
730 740 750 760
....*....|....*....|....*....|....*....|..
gi 1958755384 1768 LE--------EMKSISKERDDLKRMEEILRMEKDQLKDSLRE 1801
Cdd:pfam05483 737 QSsakaaleiELSNIKAELLSLKKQLEIEKEEKEKLKMEAKE 778
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
511-1091 |
7.41e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 61.29 E-value: 7.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 511 NNLVLDYeqLRRENED-------LKLKLKEKNELEEFEFLEQREEKDQENELSSKVELLKEKEDQIKELQRYIDAQKSET 583
Cdd:pfam15921 410 NSITIDH--LRRELDDrnmevqrLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAK 487
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 584 TKTdlsysseatedLKQAMRTLSDLDTVALDAKRESAFLRSENLELKERIN---ELSDSCKQMENGIQMYQRQLEAKKQV 660
Cdd:pfam15921 488 KMT-----------LESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDlklQELQHLKNEGDHLRNVQTECEALKLQ 556
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 661 QADLEKELQLAFQEISKLSALVDGKG------LLSNLELEKRITDLQKELNkevEEKETLQKEVHLLSELKSLPSEVETL 734
Cdd:pfam15921 557 MAEKDKVIEILRQQIENMTQLVGQHGrtagamQVEKAQLEKEINDRRLELQ---EFKILKDKKDAKIRELEARVSDLELE 633
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 735 RREL----HEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLaasqlsQRSSDEECQALKSLHVELKHRQEE 810
Cdd:pfam15921 634 KVKLvnagSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNF------RNKSEEMETTTNKLKMQLKSAQSE 707
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 811 VleESERVKQELSQKTQELAQKTAEGQEML-----NQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEK 885
Cdd:pfam15921 708 L--EQTRNTLKSMEGSDGHAMKVAMGMQKQitakrGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEK 785
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 886 NDLKQLQESLQTERDQLRSDIqdtVNMNIDTQEQLLNALES----LKQHQETINmLKMKATeemsdhLPIKGREGSSDEV 961
Cdd:pfam15921 786 NKMAGELEVLRSQERRLKEKV---ANMEVALDKASLQFAECqdiiQRQEQESVR-LKLQHT------LDVKELQGPGYTS 855
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 962 EQKLdgidEENLLAESAHTvvgsgEDHGETEEQRKIDSLLQENSRLQQTLesiiaeKEQLKMDLK---ENIEMSVENQEE 1038
Cdd:pfam15921 856 NSSM----KPRLLQPASFT-----RTHSNVPSSQSTASFLSHHSRKTNAL------KEDPTRDLKqllQELRSVINEEPT 920
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 1958755384 1039 LRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQET 1091
Cdd:pfam15921 921 VQLSKAEDKGRAPSLGALDDRVRDCIIESSLRSDICHSSSNSLQTEGSKSSET 973
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
547-1226 |
9.90e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.80 E-value: 9.90e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 547 EEKDQENELSSKVELLKEKEDQIKELQRYIDAQksettKTDLSYSSEATEDLKQAMRTLSDLDTVAldakresaflrsen 626
Cdd:TIGR04523 34 EEKQLEKKLKTIKNELKNKEKELKNLDKNLNKD-----EEKINNSNNKIKILEQQIKDLNDKLKKN-------------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 627 lelKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSALVdgkgllsnLELEKRITDLQKELNK 706
Cdd:TIGR04523 95 ---KDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEI--------KKKEKELEKLNNKYND 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 707 EVEEKETLQKEVHLLS-ELKSLPSEVETLRRELHEKSEELCVITTEREK---LFSEMAHKDSRIQGLLEEIGNTKDDLAA 782
Cdd:TIGR04523 164 LKKQKEELENELNLLEkEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKnksLESQISELKKQNNQLKDNIEKKQQEINE 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 783 SQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEElrEKLERRDSSLQSAEK 862
Cdd:TIGR04523 244 KTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQ--DWNKELKSELKNQEK 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 863 EKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKMKat 942
Cdd:TIGR04523 322 KLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESK-- 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 943 eemsdhlpIKGREGSSDEVEQKLDGIDEENLLAEsahtvvgsgedhgeteeqRKIDSLLQENSRLQQTLESIIAEKEQLK 1022
Cdd:TIGR04523 400 --------IQNQEKLNQQKDEQIKKLQQEKELLE------------------KEIERLKETIIKNNSEIKDLTNQDSVKE 453
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1023 MDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAM 1102
Cdd:TIGR04523 454 LIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEK 533
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1103 SEMQAKVTDLENLQNEfRNQALALERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAG 1182
Cdd:TIGR04523 534 KEKESKISDLEDELNK-DDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKI 612
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 1958755384 1183 LQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKT 1226
Cdd:TIGR04523 613 SSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKE 656
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
955-1723 |
1.03e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 61.01 E-value: 1.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 955 EGSSDEVEQKLDGiDEENLLAESAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVE 1034
Cdd:pfam12128 209 DGVVPPKSRLNRQ-QVEHWIRDIQAIAGIMKIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAE 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1035 NQEELRILRDELKR-----QQEIAAQEKDhVTEKSEELSRAHERLAEIEeklKEKNQKLQETQQQLVSIQEAMSEMQAKV 1109
Cdd:pfam12128 288 LNQLLRTLDDQWKEkrdelNGELSAADAA-VAKDRSELEALEDQHGAFL---DADIETAAADQEQLPSWQSELENLEERL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1110 TDLENLQNEFRNqalalervETERLELAQKLhENYEKMESITKERNDLKELQEsfeiekKQLKEYAREMESAGLQTKEQL 1189
Cdd:pfam12128 364 KALTGKHQDVTA--------KYNRRRSKIKE-QNNRDIAGIKDKLAKIREARD------RQLAVAEDDLQALESELREQL 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1190 NIAHANLKEYQEIIKELRGSISEKEAQASSTQDTgKTNPASQgetpvpreQELLPDAEEARASAEKGSElepveehsrta 1269
Cdd:pfam12128 429 EAGKLEFNEEEYRLKSRLGELKLRLNQATATPEL-LLQLENF--------DERIERAREEQEAANAEVE----------- 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1270 hSLTTEgiemeiLALTKKLEESQKEiscltKERSDLRRTQEaLQVECAQLK---DDARRTLANHLETEEEL---SLARCC 1343
Cdd:pfam12128 489 -RLQSE------LRQARKRRDQASE-----ALRQASRRLEE-RQSALDELElqlFPQAGTLLHFLRKEAPDweqSIGKVI 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1344 LKEQENKID---SLIVSLSQKEAELSSVRV---------------QLEVTTGELERKVQELCEKQEQLNiKETSEVQGKM 1405
Cdd:pfam12128 556 SPELLHRTDldpEVWDGSVGGELNLYGVKLdlkridvpewaaseeELRERLDKAEEALQSAREKQAAAE-EQLVQANGEL 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1406 SELDhiRALLLTKdSALQSVESDRLRLNKQLEESQEEIKILIKEREelRRAQEALHVEREQQQESIKEISTRLQELQDKE 1485
Cdd:pfam12128 635 EKAS--REETFAR-TALKNARLDLRRLFDEKQSEKDKKNKALAERK--DSANERLNSLEAQLKQLDKKHQAWLEEQKEQK 709
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1486 YEYLVMKslNETQGNKCEDLNQQLEAQKSSLEKVEmqnVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSL 1565
Cdd:pfam12128 710 REARTEK--QAYWQVVEGALDAQLALLKAAIAARR---SGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKI 784
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1566 EetitknqELQEKGHQLSQVKADLRETMDQMEQ-LKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKI- 1643
Cdd:pfam12128 785 E-------RIAVRRQEVLRYFDWYQETWLQRRPrLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVr 857
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1644 MDEALREERDQLReslrqteasdlekqeklRIAhlDLKEHQeTIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELK 1723
Cdd:pfam12128 858 LSENLRGLRCEMS-----------------KLA--TLKEDA-NSEQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHFK 917
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
990-1759 |
1.11e-08 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 61.13 E-value: 1.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 990 ETEEQRKIDSLLQENSRLQQTLESIIAEKEQLkMDLKENIEMSVEN----QEELRILRDELKRQQE-IAAQEK------- 1057
Cdd:PRK04863 278 ANERRVHLEEALELRRELYTSRRQLAAEQYRL-VEMARELAELNEAesdlEQDYQAASDHLNLVQTaLRQQEKieryqad 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1058 -DHVTEKSEE----LSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAK------------------------ 1108
Cdd:PRK04863 357 lEELEERLEEqnevVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRaiqyqqavqalerakqlcglpdlt 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1109 VTDLENLQNEFRNQAlalERVETERLELAQKL------HENYEKMESITKERNDlkelqesfEIEKKQLKEYAREMesag 1182
Cdd:PRK04863 437 ADNAEDWLEEFQAKE---QEATEELLSLEQKLsvaqaaHSQFEQAYQLVRKIAG--------EVSRSEAWDVAREL---- 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1183 LQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKTNPASqgetpvpreqelLPDAEEARA-SAEKGSELEP 1261
Cdd:PRK04863 502 LRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKN------------LDDEDELEQlQEELEARLES 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1262 VEEHSRTAHSLTTEgiemeilaLTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKD---DARR---TLANHLETEE 1335
Cdd:PRK04863 570 LSESVSEARERRMA--------LRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEefeDSQDvteYMQQLLERER 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1336 ELSLARCCLKEQENKIDSLIVSLSQKE-AELSSVRVQLEVTTGELerkVQELCEKQEQLNIKETSEVQGK------MSEL 1408
Cdd:PRK04863 642 ELTVERDELAARKQALDEEIERLSQPGgSEDPRLNALAERFGGVL---LSEIYDDVSLEDAPYFSALYGParhaivVPDL 718
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1409 DHIRALLLTKDSALQSV---ESDRLRLNKQLEESQEEIK-ILIKERE-ELRRAQ----------------EALHVEREQQ 1467
Cdd:PRK04863 719 SDAAEQLAGLEDCPEDLyliEGDPDSFDDSVFSVEELEKaVVVKIADrQWRYSRfpevplfgraarekriEQLRAEREEL 798
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1468 QESIKEISTRLQELQ--------------------DKEYEylvMKSLNE---TQGNKCEDLNQQLEAQKSSLEKVEmqnv 1524
Cdd:PRK04863 799 AERYATLSFDVQKLQrlhqafsrfigshlavafeaDPEAE---LRQLNRrrvELERALADHESQEQQQRSQLEQAK---- 871
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1525 NLTQRLNETLEEMKSVAKErdelrSVEERLTADRDQLKKSLEEtitkNQELQEKGHQLSQVK---ADLRETMDQMEQLKE 1601
Cdd:PRK04863 872 EGLSALNRLLPRLNLLADE-----TLADRVEEIREQLDEAEEA----KRFVQQHGNALAQLEpivSVLQSDPEQFEQLKQ 942
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1602 QLEAQNSTLESIEIEKLKLTqQLNENL------KEMTLVAKE---NDDLKIMDEALREERDQLRESLRQteasdleKQEK 1672
Cdd:PRK04863 943 DYQQAQQTQRDAKQQAFALT-EVVQRRahfsyeDAAEMLAKNsdlNEKLRQRLEQAEQERTRAREQLRQ-------AQAQ 1014
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1673 LRIAHLDLKEHQETIERLMGSVAKRTEEVSDM------NMElERANTRLQEKVQELKASELQllkskveagetKKQLkEQ 1746
Cdd:PRK04863 1015 LAQYNQVLASLKSSYDAKRQMLQELKQELQDLgvpadsGAE-ERARARRDELHARLSANRSR-----------RNQL-EK 1081
|
890
....*....|...
gi 1958755384 1747 GLALSKIEMENLN 1759
Cdd:PRK04863 1082 QLTFCEAEMDNLT 1094
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1318-1801 |
3.53e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 59.36 E-value: 3.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1318 QLKDDARR-TLANHLETEEELSLARCC------LKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELErkvQELCEKQ 1390
Cdd:pfam15921 86 QVKDLQRRlNESNELHEKQKFYLRQSVidlqtkLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELE---AAKCLKE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1391 EQLNIKETsevqgkmsELDHIRALLLTKDSALQSVESdrlrlnkqleesqeeikILIK-EREELRRAQEALHVEREQQQE 1469
Cdd:pfam15921 163 DMLEDSNT--------QIEQLRKMMLSHEGVLQEIRS-----------------ILVDfEEASGKKIYEHDSMSTMHFRS 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1470 SIKEISTRLQELqDKEYEYLvmkslnetqGNKCEDLNQQLEAQKS-SLEKVEMqnvnLTQRLNETLEEMksVAKERDELR 1548
Cdd:pfam15921 218 LGSAISKILREL-DTEISYL---------KGRIFPVEDQLEALKSeSQNKIEL----LLQQHQDRIEQL--ISEHEVEIT 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1549 SVEERLTADRDQ---LKKSLE--ETITKNQ------ELQEKGHQLSQVKADLRETM----DQMEQLKEQLEAQNSTLESI 1613
Cdd:pfam15921 282 GLTEKASSARSQansIQSQLEiiQEQARNQnsmymrQLSDLESTVSQLRSELREAKrmyeDKIEELEKQLVLANSELTEA 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1614 EIEKLKLTQQ--------------LNENLKEMTLVAKENDDLKIMDEALREERDQLReslRQTEASDLEKQEKLRIAHLD 1679
Cdd:pfam15921 362 RTERDQFSQEsgnlddqlqklladLHKREKELSLEKEQNKRLWDRDTGNSITIDHLR---RELDDRNMEVQRLEALLKAM 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1680 LKEHQETIERLMGSVAKRTE---EVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEME 1756
Cdd:pfam15921 439 KSECQGQMERQMAAIQGKNEsleKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAE 518
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 1958755384 1757 NLNLAQQIHQNLEEMKSISKERDDLKRME---EILRM---EKDQLKDSLRE 1801
Cdd:pfam15921 519 ITKLRSRVDLKLQELQHLKNEGDHLRNVQtecEALKLqmaEKDKVIEILRQ 569
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
495-1160 |
4.11e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 58.83 E-value: 4.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 495 SEENLESELTSLNTQYNNLVLDYEQLRRENEdlklKLKEKNELEEFEFLEQREEKDQENELsSKVELLKEKEDQIKELQR 574
Cdd:TIGR00618 220 RKQVLEKELKHLREALQQTQQSHAYLTQKRE----AQEEQLKKQQLLKQLRARIEELRAQE-AVLEETQERINRARKAAP 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 575 Y---------IDAQKSETTKTDLSYSSEATEDLKQAMRTLSDLDTVALDAKRESAFLRSENL-----ELKERINELSDSC 640
Cdd:TIGR00618 295 LaahikavtqIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHirdahEVATSIREISCQQ 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 641 KQMENGIQMYQRQLEAkkqvqadLEKELQLAFQEISKLSALVDGKGLLSNLELEKRITDLQKELNKEVEEKETLQKEVHL 720
Cdd:TIGR00618 375 HTLTQHIHTLQQQKTT-------LTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAI 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 721 LSELKSLPSEVETLRRELHEKSEElcvitTEREKLFSEMAHKDSRIQGLLEeigntkddlaasQLSQRSSDEECQALKSL 800
Cdd:TIGR00618 448 TCTAQCEKLEKIHLQESAQSLKER-----EQQLQTKEQIHLQETRKKAVVL------------ARLLELQEEPCPLCGSC 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 801 HVELKHRQEEVLEES-----ERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTE---KLQ 872
Cdd:TIGR00618 511 IHPNPARQDIDNPGPltrrmQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEdipNLQ 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 873 QTLEEVRALTQEKNDLK-QLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKMKATEEMSDHLPI 951
Cdd:TIGR00618 591 NITVRLQDLTEKLSEAEdMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVL 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 952 KGREGSSDEVEQK------------LDGIDEENLLAESAHTVVGSGEDHGETEEQR---KIDSLLQENSRLQQTLESIia 1016
Cdd:TIGR00618 671 PKELLASRQLALQkmqsekeqltywKEMLAQCQTLLRELETHIEEYDREFNEIENAsssLGSDLAAREDALNQSLKEL-- 748
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1017 eKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLV 1096
Cdd:TIGR00618 749 -MHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLV 827
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958755384 1097 SiqeamsemqakvtDLENLQNEFRNQALALERVETERLELAQKLHENYEKMESITKERNDLKEL 1160
Cdd:TIGR00618 828 Q-------------EEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKL 878
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
497-911 |
6.34e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 58.24 E-value: 6.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 497 ENLESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKEKNELEEFEFLEQR--EEKDQENELSSKVELLKEKEDQIKELQR 574
Cdd:COG4717 91 AELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAElaELPERLEELEERLEELRELEEELEELEA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 575 YIDAQKSETTKTDLSYSSEATEDLKQAMRTLSDLDTVALDAKRESAFLRSENLELKERINELSDsckqmENGIQMYQRQL 654
Cdd:COG4717 171 ELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLEN-----ELEAAALEERL 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 655 EAKKQVQADL---------EKELQLAFQEISKLSALVDGKGLLSNLELEKRITDLQKELNK--EVEEKETLQKE--VHLL 721
Cdd:COG4717 246 KEARLLLLIAaallallglGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEElqALPALEELEEEelEELL 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 722 SELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDS--RIQGLLEEIGNTKDDLAASQLSQrssDEECQALKS 799
Cdd:COG4717 326 AALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELeqEIAALLAEAGVEDEEELRAALEQ---AEEYQELKE 402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 800 LHVELKHRQEEVLEESERVKQELSQKT--QELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNL--LTEKLQQTL 875
Cdd:COG4717 403 ELEELEEQLEELLGELEELLEALDEEEleEELEELEEELEELEEELEELREELAELEAELEQLEEDGELaeLLQELEELK 482
|
410 420 430
....*....|....*....|....*....|....*.
gi 1958755384 876 EEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVN 911
Cdd:COG4717 483 AELRELAEEWAALKLALELLEEAREEYREERLPPVL 518
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1017-1570 |
6.42e-08 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 58.37 E-value: 6.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1017 EKEQLKMDLKENIEMSVENQEE-LRILRDELKRQQE---IAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQ 1092
Cdd:PRK01156 190 EKLKSSNLELENIKKQIADDEKsHSITLKEIERLSIeynNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMEL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1093 QQLVSIQEAMSEM-----------QAKVTDLENLQNEFRNQALALERVETE---------RLELAQKLHENYEKMES--- 1149
Cdd:PRK01156 270 EKNNYYKELEERHmkiindpvyknRNYINDYFKYKNDIENKKQILSNIDAEinkyhaiikKLSVLQKDYNDYIKKKSryd 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1150 -ITKERNDLKE-------LQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQ 1221
Cdd:PRK01156 350 dLNNQILELEGyemdynsYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLN 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1222 dtGKTNPASQGETPVPREQELLpdaEEARASAEKGSEL-EPVEEHSRTAHSLTTEGIEMEIlaltkklEESQKEISCLTK 1300
Cdd:PRK01156 430 --QRIRALRENLDELSRNMEML---NGQSVCPVCGTTLgEEKSNHIINHYNEKKSRLEEKI-------REIEIEVKDIDE 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1301 ERSDLRRTQEALQvecaqlKDDARRTLANHleteEELSLARCCLKEQENKIDSLivslsqKEAELSSVRVQLEVTTGELE 1380
Cdd:PRK01156 498 KIVDLKKRKEYLE------SEEINKSINEY----NKIESARADLEDIKIKINEL------KDKHDKYEEIKNRYKSLKLE 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1381 RKVQELCEKQEQLNIKETSEVQGKMSELDHIRALLLTKDSALQSVES----DRLRLNKQLEESQEEIKIL---IKEREEL 1453
Cdd:PRK01156 562 DLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIgfpdDKSYIDKSIREIENEANNLnnkYNEIQEN 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1454 RRAQEALhverEQQQESIKEISTRLQELQDKEYEYLVMKSLNETQGNKCE----DLNQQLEAQKSSLEKVEMQNVNLTQR 1529
Cdd:PRK01156 642 KILIEKL----RGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRkaldDAKANRARLESTIEILRTRINELSDR 717
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1958755384 1530 LNE---TLEEMKSVAKERDELRSVEERLTADRDQ--LKKSLEETIT 1570
Cdd:PRK01156 718 INDineTLESMKKIKKAIGDLKRLREAFDKSGVPamIRKSASQAMT 763
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
692-911 |
7.50e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.08 E-value: 7.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 692 ELEKRITDLQKELNKEVEEKETLQKEVH-LLSELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLL 770
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKaLLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 771 EEIGNTkddLAASQLSQR--------SSDEECQALKSLHVelkhrQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQ 842
Cdd:COG4942 104 EELAEL---LRALYRLGRqpplalllSPEDFLDAVRRLQY-----LKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958755384 843 MEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRaltQEKNDLKQLQESLQTERDQLRSDIQDTVN 911
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELA---AELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
548-1084 |
8.08e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 57.81 E-value: 8.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 548 EKDQENELSSKVELlKEKEDQIKELQRYIDAQKSETTKTDLsysseatEDLKQAMRTLSDLdtvaldakRESAFLRSENL 627
Cdd:pfam05483 88 EKIKKWKVSIEAEL-KQKENKLQENRKIIEAQRKAIQELQF-------ENEKVSLKLEEEI--------QENKDLIKENN 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 628 ELKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSALVDGKGLLSNLELE---KRITDLQKEL 704
Cdd:pfam05483 152 ATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKedhEKIQHLEEEY 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 705 NKEVEEKEtlqKEVHLL----SELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIgntKDDL 780
Cdd:pfam05483 232 KKEINDKE---KQVSLLliqiTEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDI---KMSL 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 781 AASQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEML-----------NQMEELREK 849
Cdd:pfam05483 306 QRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLrteqqrlekneDQLKIITME 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 850 LERRDSSLQSAEKEKN---LLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALES 926
Cdd:pfam05483 386 LQKKSSELEEMTKFKNnkeVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTS 465
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 927 LKQHQETINMLKMKATEEMSDHLPIKGREGSSDEVEQKLDGIDEENLLAESAHTVVGSGEDHGETEEQRKIDSLLQENSR 1006
Cdd:pfam05483 466 EEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMN 545
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755384 1007 LQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEK 1084
Cdd:pfam05483 546 LRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKK 623
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
497-904 |
8.16e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 57.74 E-value: 8.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 497 ENLESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKEKNELEEFEFLEQREEKDQENELSSKVELLKEKEDQIKELQRYI 576
Cdd:PRK02224 289 EELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAEL 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 577 DAqKSETTKTDLSYSSEATEDLKQAMRTLS----DLDTVALDAKRESAFLRSENLELKERINELSDSCKQMENGIQMYQR 652
Cdd:PRK02224 369 ES-ELEEAREAVEDRREEIEELEEEIEELRerfgDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEA 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 653 QLEAKKQVQADlekelqlafQEIsKLSALVDGKGllsnlELEKRITDLQKELNKEVEEKETLQKEVHLLSELKSLPSEVE 732
Cdd:PRK02224 448 LLEAGKCPECG---------QPV-EGSPHVETIE-----EDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIE 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 733 TL--------------RRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQALK 798
Cdd:PRK02224 513 RLeerredleeliaerRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 799 SLHVELkhrqeEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERR--DSSLQSAEKEKNLLTEKLQQTLE 876
Cdd:PRK02224 593 RIRTLL-----AAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEfdEARIEEAREDKERAEEYLEQVEE 667
|
410 420
....*....|....*....|....*...
gi 1958755384 877 EVRALTQEKNDLKQLQESLQTERDQLRS 904
Cdd:PRK02224 668 KLDELREERDDLQAEIGAVENELEELEE 695
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
497-1111 |
8.17e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.77 E-value: 8.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 497 ENLESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKEKNELEEFEFLEQREEKDQENELSSKVELLKEKEDQIKELQRYI 576
Cdd:PRK03918 196 KEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEI 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 577 daqksettktdlsysseatEDLKQAMRTLSDLDTVALDAKRESAFLRsenlELKERINELSDSCKQMENGIQMYQRQLEA 656
Cdd:PRK03918 276 -------------------EELEEKVKELKELKEKAEEYIKLSEFYE----EYLDELREIEKRLSRLEEEINGIEERIKE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 657 KKQVQADLEkelqlafqeisklsalvdgkgllsnlELEKRITDLQKELNKEVEEKETLQKEVHLLSELKSL-----PSEV 731
Cdd:PRK03918 333 LEEKEERLE--------------------------ELKKKLKELEKRLEELEERHELYEEAKAKKEELERLkkrltGLTP 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 732 ETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQA--LKSLHVELKHRQE 809
Cdd:PRK03918 387 EKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKelLEEYTAELKRIEK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 810 EVLEESERVKQELSQKTQ-----ELAQKTAEGQEMLNQMEELREKLERRD-SSLQSAEKEKNLLTEKLQQTLEEVRALTQ 883
Cdd:PRK03918 467 ELKEIEEKERKLRKELRElekvlKKESELIKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEIKSLKK 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 884 E-------KNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKmKATEEMSDHLpiKGREG 956
Cdd:PRK03918 547 ElekleelKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELK-DAEKELEREE--KELKK 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 957 SSDEVEQKLDGIDEENLLAESAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEmsvenq 1036
Cdd:PRK03918 624 LEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLE------ 697
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958755384 1037 eelrilrdELKRQQEiaaqEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQEtqQQLVSIQEAMSEMQAKVTD 1111
Cdd:PRK03918 698 --------KLKEELE----EREKAKKELEKLEKALERVEELREKVKKYKALLKE--RALSKVGEIASEIFEELTE 758
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1245-1728 |
8.76e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.00 E-value: 8.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1245 DAEEARASAEKgseLEPVEEHSRTAHSLTTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDAR 1324
Cdd:COG4913 243 ALEDAREQIEL---LEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLD 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1325 RTLANHLETEEELslarccLKEQENKIDSLivslsqkEAELSSVRVQLEvttgELERKVQELCEKQEQLNIKETSEVQGK 1404
Cdd:COG4913 320 ALREELDELEAQI------RGNGGDRLEQL-------EREIERLERELE----ERERRRARLEALLAALGLPLPASAEEF 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1405 MSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKE----------- 1473
Cdd:COG4913 383 AALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEalgldeaelpf 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1474 ------------------------ISTRLqeLQDKEYEYLVMKSLNET------QGNKCEDLNQQLEAQKSS----LEKV 1519
Cdd:COG4913 463 vgelievrpeeerwrgaiervlggFALTL--LVPPEHYAAALRWVNRLhlrgrlVYERVRTGLPDPERPRLDpdslAGKL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1520 EMQNVNLTQRLNETLEEMKSVAK--ERDELRSVEERLTA--------------DRDQLKKSL---EETITKNQELQEKGH 1580
Cdd:COG4913 541 DFKPHPFRAWLEAELGRRFDYVCvdSPEELRRHPRAITRagqvkgngtrhekdDRRRIRSRYvlgFDNRAKLAALEAELA 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1581 QLSQVKADLRETMDQMEQLKEQLEAQNSTLESI------EIEKLKLTQQLNENLKEMTLVAKENDDLkimdEALREERDQ 1654
Cdd:COG4913 621 ELEEELAEAEERLEALEAELDALQERREALQRLaeyswdEIDVASAEREIAELEAELERLDASSDDL----AALEEQLEE 696
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958755384 1655 LRESLRQTEasdlEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSDMNMELERAntRLQEKVQELKASELQ 1728
Cdd:COG4913 697 LEAELEELE----EELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA--LLEERFAAALGDAVE 764
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
545-1728 |
1.10e-07 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 57.75 E-value: 1.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 545 QREEKDQENELSSKVE------LLKEKEDQIKElqRYIDAQKSETTKTDLSYS-SEATEDLKQAMRTLSDLDTVALDAKR 617
Cdd:TIGR01612 516 KPDEVPSKNIIGFDIDqnikakLYKEIEAGLKE--SYELAKNWKKLIHEIKKElEEENEDSIHLEKEIKDLFDKYLEIDD 593
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 618 ESAFLRSENLELKERINELSDSCKQMENGIQM-------------------YQ--RQLEAKKQVQADLEKELQLAFQE-- 674
Cdd:TIGR01612 594 EIIYINKLKLELKEKIKNISDKNEYIKKAIDLkkiiennnayidelakispYQvpEHLKNKDKIYSTIKSELSKIYEDdi 673
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 675 ---ISKLSALVDgKGLLSNLELEKRITDLQKELNKE---VEEKETLQKEVHL-------------LSELK-----SLPSE 730
Cdd:TIGR01612 674 dalYNELSSIVK-ENAIDNTEDKAKLDDLKSKIDKEydkIQNMETATVELHLsnienkknelldiIVEIKkhihgEINKD 752
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 731 VETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEE------IGNTKDDLAASQLSQRS------SDEECQALK 798
Cdd:TIGR01612 753 LNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHyndqinIDNIKDEDAKQNYDKSKeyiktiSIKEDEIFK 832
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 799 SLHvELKHRQEEVL-------------------------EESERVKQELSQKT---------------QELAQKTAEGQE 838
Cdd:TIGR01612 833 IIN-EMKFMKDDFLnkvdkfinfennckekidseheqfaELTNKIKAEISDDKlndyekkfndsksliNEINKSIEEEYQ 911
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 839 MLNQMEELREKLERRDSSLQSAEK---EKNLLTEKLQQTLEEVRALTQ-EKNDLKQLQESLQTERDQLRSDIQD-TVNMN 913
Cdd:TIGR01612 912 NINTLKKVDEYIKICENTKESIEKfhnKQNILKEILNKNIDTIKESNLiEKSYKDKFDNTLIDKINELDKAFKDaSLNDY 991
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 914 IDTQEQLLNALESLKQHQETI--NMLKMKATEemsdhlpikgREGSSDEVEQKLDGIDEENLLAESA-HTVVGSGEDHGE 990
Cdd:TIGR01612 992 EAKNNELIKYFNDLKANLGKNkeNMLYHQFDE----------KEKATNDIEQKIEDANKNIPNIEIAiHTSIYNIIDEIE 1061
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 991 TEEQRKIDSLlqeNSRLQQTLESIIAEKEQLKMDLKE------NIEMSVENQEELRILRDELKR--QQ---------EIA 1053
Cdd:TIGR01612 1062 KEIGKNIELL---NKEILEEAEINITNFNEIKEKLKHynfddfGKEENIKYADEINKIKDDIKNldQKidhhikaleEIK 1138
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1054 AQEKDHVTEKSEELSR---------AHERLAEIEEKLK------EKNQKLQETQQQLVSiqeAMSEMQAKVTDLENLQNE 1118
Cdd:TIGR01612 1139 KKSENYIDEIKAQINDledvadkaiSNDDPEEIEKKIEnivtkiDKKKNIYDEIKKLLN---EIAEIEKDKTSLEEVKGI 1215
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1119 FRNQALALERVETERLELAQKLHENYEK-MESITKERNDLKELQESFEIEKKQLKEYAREMESaglqtkeqLNIAHANLK 1197
Cdd:TIGR01612 1216 NLSYGKNLGKLFLEKIDEEKKKSEHMIKaMEAYIEDLDEIKEKSPEIENEMGIEMDIKAEMET--------FNISHDDDK 1287
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1198 EYQEIIKELRGSISE-KEAQASSTQDTGKTNPASQGETPVpreQELLPDAEeaRASAEKGSELEPVEEHSRTAHSLTTEG 1276
Cdd:TIGR01612 1288 DHHIISKKHDENISDiREKSLKIIEDFSEESDINDIKKEL---QKNLLDAQ--KHNSDINLYLNEIANIYNILKLNKIKK 1362
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1277 IEMEILALTKKLEESQKEI-SCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLI 1355
Cdd:TIGR01612 1363 IIDEVKEYTKEIEENNKNIkDELDKSEKLIKKIKDDINLEECKSKIESTLDDKDIDECIKKIKELKNHILSEESNIDTYF 1442
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1356 ---------VSLSQKEAELSS------VRVQLEVTTGELERKVQELCEKQEQLN-IKETSEVQGKMSELDHIRALLLTKD 1419
Cdd:TIGR01612 1443 knadennenVLLLFKNIEMADnksqhiLKIKKDNATNDHDFNINELKEHIDKSKgCKDEADKNAKAIEKNKELFEQYKKD 1522
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1420 SALQSVESDRLRLNKQLEESQEEIKILIKEREELRRaqeALHVEREQQQESIKEISTRLQELQDkeyeylvmKSLNETQG 1499
Cdd:TIGR01612 1523 VTELLNKYSALAIKNKFAKTKKDSEIIIKEIKDAHK---KFILEAEKSEQKIKEIKKEKFRIED--------DAAKNDKS 1591
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1500 NKCE-DLNQQLEAQKSSLEKVEmqnvNLTQRLNETLEEMKSVAKERDELrsveerltadrdqlkkSLEETITKNQELQEK 1578
Cdd:TIGR01612 1592 NKAAiDIQLSLENFENKFLKIS----DIKKKINDCLKETESIEKKISSF----------------SIDSQDTELKENGDN 1651
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1579 GHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIE----KLKLTQQLNENLKEMTLVAKEndDLKIMDEALREERDQ 1654
Cdd:TIGR01612 1652 LNSLQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDvdqhKKNYEIGIIEKIKEIAIANKE--EIESIKELIEPTIEN 1729
|
1290 1300 1310 1320 1330 1340 1350
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958755384 1655 LRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSDMNMEL-ERANTRLQEKVQELKASELQ 1728
Cdd:TIGR01612 1730 LISSFNTNDLEGIDPNEKLEEYNTEIGDIYEEFIELYNIIAGCLETVSKEPITYdEIKNTRINAQNEFLKIIEIE 1804
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1378-1798 |
1.10e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.08 E-value: 1.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1378 ELERKVQELCEKQEQLNIKETSEVQGKMSELDHIRAllltKDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQ 1457
Cdd:COG4717 50 RLEKEADELFKPQGRKPELNLKELKELEEELKEAEE----KEEEYAELQEELEELEEELEELEAELEELREELEKLEKLL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1458 EA--LHVEREQQQESIKEISTRLQELQDKEYEYlvmkslnETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLT-QRLNETL 1534
Cdd:COG4717 126 QLlpLYQELEALEAELAELPERLEELEERLEEL-------RELEEELEELEAELAELQEELEELLEQLSLATeEELQDLA 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1535 EEMKSVAKERDELRSVEERLTADRDQLKKSLEEtITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIE 1614
Cdd:COG4717 199 EELEELQQRLAELEEELEEAQEELEELEEELEQ-LENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAG 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1615 IekLKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHL-DLKEHQETIERLMGS 1693
Cdd:COG4717 278 V--LFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELlELLDRIEELQELLRE 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1694 VAKRTEEvsdmnMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQgLALSKIEMENLN-------------- 1759
Cdd:COG4717 356 AEELEEE-----LQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEE-LEELEEQLEELLgeleellealdeee 429
|
410 420 430
....*....|....*....|....*....|....*....
gi 1958755384 1760 LAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQLKDS 1798
Cdd:COG4717 430 LEEELEELEEELEELEEELEELREELAELEAELEQLEED 468
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1038-1258 |
1.19e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 56.38 E-value: 1.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1038 ELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLENLQN 1117
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1118 EFRNQALALERVET--------ERLELAQKLHE-NYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQ 1188
Cdd:COG3883 97 RSGGSVSYLDVLLGsesfsdflDRLSALSKIADaDADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQ 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1189 LNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKTNPASQGETPVPREQELLPDAEEARASAEKGSE 1258
Cdd:COG3883 177 QAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASA 246
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1245-1919 |
1.46e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 57.29 E-value: 1.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1245 DAEEARASAEKgsELEPVEEHSRTAHSLTTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDdAR 1324
Cdd:TIGR00618 197 ELLTLRSQLLT--LCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEE-LR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1325 RTLANHLETEEELSLARcclkeQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCE--KQEQLNIKETSEVQ 1402
Cdd:TIGR00618 274 AQEAVLEETQERINRAR-----KAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAhvKQQSSIEEQRRLLQ 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1403 GKMSELDHIR-----ALLLTKDSALQSVESDRLR-LNKQLEESQEEIKILIKEREELRRAQ---EALHVEREQQQESIKE 1473
Cdd:TIGR00618 349 TLHSQEIHIRdahevATSIREISCQQHTLTQHIHtLQQQKTTLTQKLQSLCKELDILQREQatiDTRTSAFRDLQGQLAH 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1474 ISTRlQELQDKEYEYLVMKSLNETQGNKCEDLNQQLEAQKSSLEKVEMQNV-NLTQRLNETLEEMKSVAKERDEL-RSVE 1551
Cdd:TIGR00618 429 AKKQ-QELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKeQIHLQETRKKAVVLARLLELQEEpCPLC 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1552 ERLT--ADRDQLKKSLEETITKNQELQEKGHQLSQVKADLREtmdQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLK 1629
Cdd:TIGR00618 508 GSCIhpNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYH---QLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKE 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1630 EMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSDMNMELE 1709
Cdd:TIGR00618 585 DIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHA 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1710 RANTRLQEKVQELKASELQLLKSKVEA----------------------GETKKQLKEQGLAL----SKIEMENLNLAQQ 1763
Cdd:TIGR00618 665 LSIRVLPKELLASRQLALQKMQSEKEQltywkemlaqcqtllrelethiEEYDREFNEIENASsslgSDLAAREDALNQS 744
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1764 IHQNLEEMKSISKER--DDLKRMEE--ILRMEKDQLKDSLREAKFKAHQnYEETVQYGKGLLCGGEQHCTGRLREKCLRI 1839
Cdd:TIGR00618 745 LKELMHQARTVLKARteAHFNNNEEvtAALQTGAELSHLAAEIQFFNRL-REEDTHLLKTLEAEIGQEIPSDEDILNLQC 823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1840 EKLLKRYSEMANDYECLNRFSLDLEKETKTQKELSVTIKTKLSLPYTQTKEIEKLLTANQRCSMEFHRILKKLKYVLSYI 1919
Cdd:TIGR00618 824 ETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKIQFDGDALIKFLHEITLY 903
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1299-1543 |
1.49e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.31 E-value: 1.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1299 TKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEElslarccLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGE 1378
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQ-------LAALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1379 LERKVQELCEKQEQLniKETSEVQGKMSELDHIrALLLTKDSALQSVESDRLrLNKQLEESQEEIKILIKEREELRRAQE 1458
Cdd:COG4942 92 IAELRAELEAQKEEL--AELLRALYRLGRQPPL-ALLLSPEDFLDAVRRLQY-LKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1459 ALHVEREQQQESIKEISTRLQELQdkeyeylvmkSLNETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMK 1538
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALE----------ALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
....*
gi 1958755384 1539 SVAKE 1543
Cdd:COG4942 238 AAAER 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1034-1223 |
1.49e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.31 E-value: 1.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1034 ENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAkvtDLE 1113
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA---ELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1114 NLQNEFRNQALALERVETE-----------------RLELAQKLHEN-YEKMESITKERNDLKELQESFEIEKKQLKEYA 1175
Cdd:COG4942 101 AQKEELAELLRALYRLGRQpplalllspedfldavrRLQYLKYLAPArREQAEELRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1958755384 1176 REMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDT 1223
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1509-1824 |
1.53e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.97 E-value: 1.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1509 LEAQKSSLEKVEMQ-----NVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQLS 1583
Cdd:PRK02224 182 LSDQRGSLDQLKAQieekeEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1584 QVKADLRETMDQMEQLKEQLEAQNSTLESIEIEklkltqqLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQte 1663
Cdd:PRK02224 262 DLRETIAETEREREELAEEVRDLRERLEELEEE-------RDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEE-- 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1664 asdlekqeklriAHLDLKEHQETIERLMGSVAkrteevsdmnmELERANTRLQEKVQELKAselqllkskvEAGETKKQL 1743
Cdd:PRK02224 333 ------------CRVAAQAHNEEAESLREDAD-----------DLEERAEELREEAAELES----------ELEEAREAV 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1744 KEQGLALSKIEmenlnlaQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQLKDSLREAKFKAhQNYEETVQYGKGLLCG 1823
Cdd:PRK02224 380 EDRREEIEELE-------EEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATL-RTARERVEEAEALLEA 451
|
.
gi 1958755384 1824 G 1824
Cdd:PRK02224 452 G 452
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1005-1487 |
1.56e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.70 E-value: 1.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1005 SRLQQTLESIIAEK--EQLKMDLKENIEMSVENQEELRILRDELKRqqeiAAQEKDHVTEKSEELSRAHERLAEIEEKLK 1082
Cdd:COG4717 37 STLLAFIRAMLLERleKEADELFKPQGRKPELNLKELKELEEELKE----AEEKEEEYAELQEELEELEEELEELEAELE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1083 EKNQKLQETQQQLvSIQEAMSEMQAKVTDLENLQNEFRnqalalerveterlELAQKLHENYEKMESITKERNDLKELQE 1162
Cdd:COG4717 113 ELREELEKLEKLL-QLLPLYQELEALEAELAELPERLE--------------ELEERLEELRELEEELEELEAELAELQE 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1163 SFEIEKKQLKEyarEMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKTNPASQgetpVPREQEL 1242
Cdd:COG4717 178 ELEELLEQLSL---ATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEE----RLKEARL 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1243 LPDAEEARASAE-KGSELEPVEEHSRTAHSLTTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKD 1321
Cdd:COG4717 251 LLLIAAALLALLgLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGL 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1322 DARRTLANHLETEEELSLarccLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCEKQEQLNIKEtsev 1401
Cdd:COG4717 331 PPDLSPEELLELLDRIEE----LQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKE---- 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1402 qgkmsELDHIRALLLTKDSALQSVES--DRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESiKEISTRLQ 1479
Cdd:COG4717 403 -----ELEELEEQLEELLGELEELLEalDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEED-GELAELLQ 476
|
....*...
gi 1958755384 1480 ELQDKEYE 1487
Cdd:COG4717 477 ELEELKAE 484
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1528-1820 |
1.62e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 1.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1528 QRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEetitKNQELQEKGHQLSqvKADLRETMDQMEQLKEQLEAQN 1607
Cdd:TIGR02168 179 RKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKE----LKAELRELELALL--VLRLEELREELEELQEELKEAE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1608 STLESIEIEKLKLTQQLNENLKEMTLVAKEND--------------DLKIMDEALREERDQLRESLRQTEASDLEKQEKL 1673
Cdd:TIGR02168 253 EELEELTAELQELEEKLEELRLEVSELEEEIEelqkelyalaneisRLEQQKQILRERLANLERQLEELEAQLEELESKL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1674 RIAHLDLKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQEL--KASELQLLKSKVEAgeTKKQLKEQGLALS 1751
Cdd:TIGR02168 333 DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLetLRSKVAQLELQIAS--LNNEIERLEARLE 410
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958755384 1752 KIEMENLNLAQQIHQNLE-----EMKSISKERDDLKRMEEILRMEKDQLKDSLREAKFKAHQNYEETVQYGKGL 1820
Cdd:TIGR02168 411 RLEDRRERLQQEIEELLKkleeaELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAEREL 484
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
496-1021 |
1.82e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 1.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 496 EENLESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKEKNELEEFEFLEQREEKDQENELSSKVELLKEKEDQIKELQRY 575
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 576 IdaqksettktdlsysSEATEDLKQAMRTLSDLDTVALDAKRESAFLRSENLELKERINELSDSCKQMENGIQMYQRQLE 655
Cdd:COG1196 395 A---------------AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 656 AKKQVQADLEKELQLAFQEISKLSALVDGKglLSNLELEKRITDLQKELNKEVEEKETLQKEVHLLSELKSLPSEVETLR 735
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEA--AARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYE 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 736 RELHEKSEELCV--ITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQALKSLHVELkhrqEEVLE 813
Cdd:COG1196 538 AALEAALAAALQniVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDL----READA 613
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 814 ESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQE 893
Cdd:COG1196 614 RYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 894 SLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKMKATEEMSDH----LPIKGREGSSDEVEQKLDGID 969
Cdd:COG1196 694 ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLeeeaLEELPEPPDLEELERELERLE 773
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958755384 970 EE-------NLLAESAHTVVgsGEDHGETEEQRkiDSLLQENSRLQQTLESIIAEKEQL 1021
Cdd:COG1196 774 REiealgpvNLLAIEEYEEL--EERYDFLSEQR--EDLEEARETLEEAIEEIDRETRER 828
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1065-1772 |
1.83e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.85 E-value: 1.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1065 EELSRAHERLAEIEEKLKeknqKLQETQQQLVSIQEAMSEMQAKVTDLENLQNEFRNQALALERVETERLElaqklheny 1144
Cdd:COG4913 235 DDLERAHEALEDAREQIE----LLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELR--------- 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1145 ekmESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLniahanlkeyQEIIKELRGSISEKEAQASSTQDTG 1224
Cdd:COG4913 302 ---AELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQL----------EREIERLERELEERERRRARLEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1225 KTnpasQGETPVPREQELLPDAEEARASAEKGSELEpvEEHSRTAHSLttegiEMEILALTKKLEESQKEISCLTKERSD 1304
Cdd:COG4913 369 AA----LGLPLPASAEEFAALRAEAAALLEALEEEL--EALEEALAEA-----EAALRDLRRELRELEAEIASLERRKSN 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1305 LRRTQEALQVE-CAQLKDDAR--RTLANHLE--TEEEL----------SLARcclkeqenkidSLIVSlSQKEAELSSV- 1368
Cdd:COG4913 438 IPARLLALRDAlAEALGLDEAelPFVGELIEvrPEEERwrgaiervlgGFAL-----------TLLVP-PEHYAAALRWv 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1369 -------RVQLEvttgelerKVQELCEKQEQLNIKETS---EVQGKMSEL-DHIRALLlTKDSALQSVES-DRLR----- 1431
Cdd:COG4913 506 nrlhlrgRLVYE--------RVRTGLPDPERPRLDPDSlagKLDFKPHPFrAWLEAEL-GRRFDYVCVDSpEELRrhpra 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1432 --LNKQLEESQE--EIKILIKEREEL------RRAQEALHVEREQQQESIKEISTRLQELQDKEyeylvmkslnetqgnk 1501
Cdd:COG4913 577 itRAGQVKGNGTrhEKDDRRRIRSRYvlgfdnRAKLAALEAELAELEEELAEAEERLEALEAEL---------------- 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1502 cedlnQQLEAQKSSLEKVemqnvnltQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKksleetitknqELQEkghQ 1581
Cdd:COG4913 641 -----DALQERREALQRL--------AEYSWDEIDVASAEREIAELEAELERLDASSDDLA-----------ALEE---Q 693
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1582 LSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQ 1661
Cdd:COG4913 694 LEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEE 773
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1662 TEASDLEKQEKLRiahldlkehqETIERLMGSVAKR-TEEVSDMNMELErANTRLQEKVQELKASELQllkskveagETK 1740
Cdd:COG4913 774 RIDALRARLNRAE----------EELERAMRAFNREwPAETADLDADLE-SLPEYLALLDRLEEDGLP---------EYE 833
|
730 740 750
....*....|....*....|....*....|..
gi 1958755384 1741 KQLKEQGLALSKIEMENLNlaQQIHQNLEEMK 1772
Cdd:COG4913 834 ERFKELLNENSIEFVADLL--SKLRRAIREIK 863
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1400-1788 |
2.04e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 56.45 E-value: 2.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1400 EVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQ----EALHVEREQQQESIKEIS 1475
Cdd:PRK01156 343 KKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQeidpDAIKKELNEINVKLQDIS 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1476 TRLQELQDK-----EYEYLVMKSLNETQG-NKCEDLNQQLEAQKSS--LEKVEMQNVNLTQRLNETLEEMKSVAKERDEL 1547
Cdd:PRK01156 423 SKVSSLNQRiralrENLDELSRNMEMLNGqSVCPVCGTTLGEEKSNhiINHYNEKKSRLEEKIREIEIEVKDIDEKIVDL 502
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1548 RSVEERLTadrdqlKKSLEETITKNQELQEKGHQLSQVK---ADLRETMDQMEQLKEQ--------LEAQN-------ST 1609
Cdd:PRK01156 503 KKRKEYLE------SEEINKSINEYNKIESARADLEDIKikiNELKDKHDKYEEIKNRykslkledLDSKRtswlnalAV 576
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1610 LESIEIEKLK-----LTQQLNENLKEMTLVAKENDDLKIMDEALREERDQlreslrqtEASDLEKQEKLRiahLDLKEHQ 1684
Cdd:PRK01156 577 ISLIDIETNRsrsneIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIEN--------EANNLNNKYNEI---QENKILI 645
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1685 ETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMEnlnlAQQI 1764
Cdd:PRK01156 646 EKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDR----INDI 721
|
410 420
....*....|....*....|....
gi 1958755384 1765 HQNLEEMKSISKERDDLKRMEEIL 1788
Cdd:PRK01156 722 NETLESMKKIKKAIGDLKRLREAF 745
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
692-1260 |
2.06e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.85 E-value: 2.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 692 ELEKRITDLQ---KELNKEVEEKETLQKEVHLLSELKSLPSEVETLRRELHEKSEELCVITTEREKLfsEMAHKDSRIQG 768
Cdd:COG4913 222 DTFEAADALVehfDDLERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQR--RLELLEAELEE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 769 LLEEIGNTKDDLAASQLSQRSSDEECQALKSLHVELKHRQEEVLEeservkQELSQKTQELAQKTAEGQEMLNQMEELRE 848
Cdd:COG4913 300 LRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLE------REIERLERELEERERRRARLEALLAALGL 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 849 KLERRDSSLQSAEKEknlLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQD--TVNMNIDtqEQLLNALES 926
Cdd:COG4913 374 PLPASAEEFAALRAE---AAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASleRRKSNIP--ARLLALRDA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 927 LKQHqetinmLKMKATEemsdhLPIKGregssDEVEQKLDgiDEE--------------NLLAESAH------------- 979
Cdd:COG4913 449 LAEA------LGLDEAE-----LPFVG-----ELIEVRPE--EERwrgaiervlggfalTLLVPPEHyaaalrwvnrlhl 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 980 --TVVGSGEDHGETEEQR---KIDSLLQE----NSRLQQTLESIIAEKEQLkmdlkenieMSVENQEELR-----ILRDE 1045
Cdd:COG4913 511 rgRLVYERVRTGLPDPERprlDPDSLAGKldfkPHPFRAWLEAELGRRFDY---------VCVDSPEELRrhpraITRAG 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1046 LKRQQEIAAQEKDHVTEKSEEL--SRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLENLQnEFRNQA 1123
Cdd:COG4913 582 QVKGNGTRHEKDDRRRIRSRYVlgFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLA-EYSWDE 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1124 LALERVETERLELAQKLhenyekmESITKERNDLKELQESFEIEKKQLKEYAREmesaglqtKEQLNIAHANLkeyQEII 1203
Cdd:COG4913 661 IDVASAEREIAELEAEL-------ERLDASSDDLAALEEQLEELEAELEELEEE--------LDELKGEIGRL---EKEL 722
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958755384 1204 KELRGSISEKEAQASSTQDTGKTNPASQGEtpvPREQELLPDAEEARASAEKGSELE 1260
Cdd:COG4913 723 EQAEEELDELQDRLEAAEDLARLELRALLE---ERFAAALGDAVERELRENLEERID 776
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
336-1617 |
3.05e-07 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 56.21 E-value: 3.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 336 NEVSNDEALLKRYRREIVDLKKQLEEVNTKTRAQEIEK----DQLAQLLDEKDLLQKVQ---DEKIQNlkrmlVTSSSIA 408
Cdd:TIGR01612 544 AGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEKEIkdlfDKYLEIDDEIIYINKLKlelKEKIKN-----ISDKNEY 618
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 409 LQQELEIKK--KRRVTWCFGKMKDSNY-VKEFKIPTNITTRTRKTSVTPLRENSLMKLGE--SALSWESEVfDNT----- 478
Cdd:TIGR01612 619 IKKAIDLKKiiENNNAYIDELAKISPYqVPEHLKNKDKIYSTIKSELSKIYEDDIDALYNelSSIVKENAI-DNTedkak 697
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 479 ---LEPLAEAEWSSATAlLSEENLESELTSLNTQYNNLVLD--------YEQLRRENEDLKLKLKEKNELEEFEFLEQRE 547
Cdd:TIGR01612 698 lddLKSKIDKEYDKIQN-METATVELHLSNIENKKNELLDIiveikkhiHGEINKDLNKILEDFKNKEKELSNKINDYAK 776
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 548 EKDQENELSSKV-ELLKEKEDQIKelqryIDAQKSETTKTDLSYSSEATEDLK----QAMRTLSDLDTVALD-AKRESAF 621
Cdd:TIGR01612 777 EKDELNKYKSKIsEIKNHYNDQIN-----IDNIKDEDAKQNYDKSKEYIKTISikedEIFKIINEMKFMKDDfLNKVDKF 851
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 622 LRSENlELKERINELSDSCKQMENGIQ---------MYQRQLEAKKQVQADLEKELQLAFQEISKLSAlVDGKgllsnLE 692
Cdd:TIGR01612 852 INFEN-NCKEKIDSEHEQFAELTNKIKaeisddklnDYEKKFNDSKSLINEINKSIEEEYQNINTLKK-VDEY-----IK 924
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 693 LEKRITD-LQKELNKEVEEKETLQKEVHLLSELKSL-PSEVETLRRELHEKSEELcvitterEKLFSEMAHKD--SRIQG 768
Cdd:TIGR01612 925 ICENTKEsIEKFHNKQNILKEILNKNIDTIKESNLIeKSYKDKFDNTLIDKINEL-------DKAFKDASLNDyeAKNNE 997
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 769 LLEEIGNTKDDLAASQ--LSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNqmeel 846
Cdd:TIGR01612 998 LIKYFNDLKANLGKNKenMLYHQFDEKEKATNDIEQKIEDANKNIPNIEIAIHTSIYNIIDEIEKEIGKNIELLN----- 1072
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 847 REKLERRDSSLQSAEKEKnlltEKL----------QQTLEEVRALTQEKNDLKQLQESLQTERDQLrSDIQDTVNMNIDT 916
Cdd:TIGR01612 1073 KEILEEAEINITNFNEIK----EKLkhynfddfgkEENIKYADEINKIKDDIKNLDQKIDHHIKAL-EEIKKKSENYIDE 1147
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 917 QEQLLNALESLKqhQETINMLKMKATEEMSDHL--PIKGREGSSDEVEQKLDGIDEENLLAESAHTVVGSGEDHGET--- 991
Cdd:TIGR01612 1148 IKAQINDLEDVA--DKAISNDDPEEIEKKIENIvtKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEVKGINLSYGKNlgk 1225
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 992 -------EEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVEnQEELRILRDELKRQQEIAAQEKDHVT--- 1061
Cdd:TIGR01612 1226 lflekidEEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEMGIEMDIKAE-METFNISHDDDKDHHIISKKHDENISdir 1304
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1062 EKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQ-----AKVTDLENLQNEFRNQAlalERVETERLEL 1136
Cdd:TIGR01612 1305 EKSLKIIEDFSEESDINDIKKELQKNLLDAQKHNSDINLYLNEIAniyniLKLNKIKKIIDEVKEYT---KEIEENNKNI 1381
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1137 AQKLhENYEKMESITKERNDLKELQESFE--IEKKQLKE---YAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSIS 1211
Cdd:TIGR01612 1382 KDEL-DKSEKLIKKIKDDINLEECKSKIEstLDDKDIDEcikKIKELKNHILSEESNIDTYFKNADENNENVLLLFKNIE 1460
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1212 EKEAQASSTQDTGKTNPASQGETPVPREQELLPDAEEARASAEKGSElepveehsrtahslttegiemEILALTKKLEES 1291
Cdd:TIGR01612 1461 MADNKSQHILKIKKDNATNDHDFNINELKEHIDKSKGCKDEADKNAK---------------------AIEKNKELFEQY 1519
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1292 QKEISCLTKERSDLrrtqeALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEA---ELSSV 1368
Cdd:TIGR01612 1520 KKDVTELLNKYSAL-----AIKNKFAKTKKDSEIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAkndKSNKA 1594
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1369 RVQLEVTTGELERKVQELCEKQEQLN--IKETSEVQGKMSELDhiralLLTKDSALQSVESDRLRLNKQLEESQEEIKIL 1446
Cdd:TIGR01612 1595 AIDIQLSLENFENKFLKISDIKKKINdcLKETESIEKKISSFS-----IDSQDTELKENGDNLNSLQEFLESLKDQKKNI 1669
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1447 IKEREELrraqealhverEQQQESIKEISTRLQElQDKEYEYLVMKSLNETQGNKCEDLNQQLEAQKSSLEKV------- 1519
Cdd:TIGR01612 1670 EDKKKEL-----------DELDSEIEKIEIDVDQ-HKKNYEIGIIEKIKEIAIANKEEIESIKELIEPTIENLissfntn 1737
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1520 EMQNVNLTQRLNETLEEMKSVAKERDELRSVEErltadrDQLKKSLEETITKNQelqekghqlsqvkadLRETmdqmeql 1599
Cdd:TIGR01612 1738 DLEGIDPNEKLEEYNTEIGDIYEEFIELYNIIA------GCLETVSKEPITYDE---------------IKNT------- 1789
|
1370
....*....|....*...
gi 1958755384 1600 keQLEAQNSTLESIEIEK 1617
Cdd:TIGR01612 1790 --RINAQNEFLKIIEIEK 1805
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1546-1803 |
3.13e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 3.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1546 ELRSVEE---RLTADRDQLKKSLE------ETITKNQELQEKGHQLsqvkaDLRETMDQMEQLKEQLEAQNSTLESIEIE 1616
Cdd:COG1196 180 KLEATEEnleRLEDILGELERQLEplerqaEKAERYRELKEELKEL-----EAELLLLKLRELEAELEELEAELEELEAE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1617 KLKLTQQLnenlkemtlvakenddlkimdEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAK 1696
Cdd:COG1196 255 LEELEAEL---------------------AELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1697 RTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLNLAQQIHQNLEE-MKSIS 1775
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEElLEALR 393
|
250 260
....*....|....*....|....*...
gi 1958755384 1776 KERDDLKRMEEILRMEKDQLKDSLREAK 1803
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEE 421
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1002-1237 |
4.10e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.77 E-value: 4.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1002 QENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKL 1081
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1082 KEKNQKLQEtqqQLVSIQEAMSEMQAKVTDLENLQNEFRNQALALERVETERLELAQKLHENYEKME----SITKERNDL 1157
Cdd:COG4942 100 EAQKEELAE---LLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAalraELEAERAEL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1158 KELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSIS--EKEAQASSTQDTGKTNPASQGETP 1235
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIArlEAEAAAAAERTPAAGFAALKGKLP 256
|
..
gi 1958755384 1236 VP 1237
Cdd:COG4942 257 WP 258
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1436-1695 |
4.47e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.69 E-value: 4.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1436 LEESQ--EEIKILIKEREELRRAQEALHVEREQQQ--ESIKEISTRLQELQDK--EYEYLVMKSLNETQGNKCEDLNQQL 1509
Cdd:COG4913 218 LEEPDtfEAADALVEHFDDLERAHEALEDAREQIEllEPIRELAERYAAARERlaELEYLRAALRLWFAQRRLELLEAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1510 EAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVE-ERLTADRDQLKKSLEETITKNQELQEK----GHQLSQ 1584
Cdd:COG4913 298 EELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRlEQLEREIERLERELEERERRRARLEALlaalGLPLPA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1585 VKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEmtlVAKENDDLK----IMDEALREERDQLRESLR 1660
Cdd:COG4913 378 SAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRE---LEAEIASLErrksNIPARLLALRDALAEALG 454
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1958755384 1661 QTEAsdlekqeKLRIA--HLDLKEHQET----IERLMGSVA 1695
Cdd:COG4913 455 LDEA-------ELPFVgeLIEVRPEEERwrgaIERVLGGFA 488
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1525-1741 |
7.56e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.00 E-value: 7.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1525 NLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEkghQLSQVKADLRETMDQMEQLKEQLE 1604
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQ---ELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1605 AQNSTLEsieiEKLKLTQQLNENLKEMTLVAKEN--------DDLKIMDEALREERDQLR---ESLRQTEASDLEKQEKL 1673
Cdd:COG4942 101 AQKEELA----ELLRALYRLGRQPPLALLLSPEDfldavrrlQYLKYLAPARREQAEELRadlAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755384 1674 RIAHLDLKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKK 1741
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1572-1786 |
9.99e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 9.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1572 NQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKIMDEALREE 1651
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1652 RDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLK 1731
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958755384 1732 SKVEAGETKKQL----KEQGLALSKIEMENLNLAQQIHQNLEEMKSISKERDDLKRMEE 1786
Cdd:COG4942 179 LLAELEEERAALealkAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1008-1781 |
1.00e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 54.67 E-value: 1.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1008 QQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLkeknQK 1087
Cdd:TIGR00606 188 LETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNL----SK 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1088 LQETQQQLVSIQEAMSEMQAKVTDLEnlqnefrnqaLALERVETERLELAQKLHENYEK-MESITKERNDLKELQESFEI 1166
Cdd:TIGR00606 264 IMKLDNEIKALKSRKKQMEKDNSELE----------LKMEKVFQGTDEQLNDLYHNHQRtVREKERELVDCQRELEKLNK 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1167 EKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELrgsisekeaQASSTQDTGKTNPASQGETPVPREQELLPDA 1246
Cdd:TIGR00606 334 ERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSL---------ATRLELDGFERGPFSERQIKNFHTLVIERQE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1247 EEARASAEKGSELEPVE-------EHSRTAHSLTTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTqeaLQVECAQL 1319
Cdd:TIGR00606 405 DEAKTAAQLCADLQSKErlkqeqaDEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRI---LELDQELR 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1320 KDDARRTLANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAEL---SSVRVQLEVTTGELERKVQELCEKQEQLNIK 1396
Cdd:TIGR00606 482 KAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLnhhTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDE 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1397 ETSEV-------------QGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEikiLIKEREELRRA--QEALH 1461
Cdd:TIGR00606 562 LTSLLgyfpnkkqledwlHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQ---LSSYEDKLFDVcgSQDEE 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1462 VEREQQQESIKEISTRLQELQDKE--YEYLVMKSLNETQG--NKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEM 1537
Cdd:TIGR00606 639 SDLERLKEEIEKSSKQRAMLAGATavYSQFITQLTDENQSccPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESEL 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1538 KSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEkghQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEK 1617
Cdd:TIGR00606 719 KKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNR---DIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIME 795
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1618 lKLTQQLNENLKEMTLVAKEND--DLKIMDEALREERDQLRESLRqTEASDLEKQEKL------RIAHLDLKEHQETIER 1689
Cdd:TIGR00606 796 -RFQMELKDVERKIAQQAAKLQgsDLDRTVQQVNQEKQEKQHELD-TVVSKIELNRKLiqdqqeQIQHLKSKTNELKSEK 873
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1690 LmgSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKskvEAGETKKQLKEQGLALSKIEMENLNLAQQIHQNLE 1769
Cdd:TIGR00606 874 L--QIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSP---LETFLEKDQQEKEELISSKETSNKKAQDKVNDIKE 948
|
810
....*....|..
gi 1958755384 1770 EMKSISKERDDL 1781
Cdd:TIGR00606 949 KVKNIHGYMKDI 960
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1587-1802 |
1.21e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 1.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1587 ADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASD 1666
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1667 LEKQEKL--RIAHLDLKEHQETIERLMGSvaKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLK 1744
Cdd:COG4942 100 EAQKEELaeLLRALYRLGRQPPLALLLSP--EDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755384 1745 EQglaLSKIEMENLNLAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQLKDSLREA 1802
Cdd:COG4942 178 AL---LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
662-896 |
1.29e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 53.78 E-value: 1.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 662 ADLEKELQLAFQEISKLSALVDGKGLLSNL-ELEKRITDLQKELNKEVEEKETLQKEVHLLSELKSLPSEVETLRR---- 736
Cdd:PRK05771 66 LPKLNPLREEKKKVSVKSLEELIKDVEEELeKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDLSLLLGfkyv 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 737 -----ELHEKSEELCVITTEREKLFsemahkdsriqglleEIGNTKD-DLAASQLSQRSSDEECQALKSLHVElkhrqEE 810
Cdd:PRK05771 146 svfvgTVPEDKLEELKLESDVENVE---------------YISTDKGyVYVVVVVLKELSDEVEEELKKLGFE-----RL 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 811 VLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQ---SAEKEKNLLTEKLQQTlEEVRALTQ--EK 885
Cdd:PRK05771 206 ELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYeylEIELERAEALSKFLKT-DKTFAIEGwvPE 284
|
250
....*....|.
gi 1958755384 886 NDLKQLQESLQ 896
Cdd:PRK05771 285 DRVKKLKELID 295
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1305-1988 |
1.97e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 1.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1305 LRRTQEALQvecaQLKDDAR--RTLANHLETEEELSLARCCLKEQENKID--SLIVSLSQKEAELSSVRVQLEVTTGELE 1380
Cdd:TIGR02168 181 LERTRENLD----RLEDILNelERQLKSLERQAEKAERYKELKAELRELElaLLVLRLEELREELEELQEELKEAEEELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1381 RKVQELCEKQEQLNIKEtSEVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEAL 1460
Cdd:TIGR02168 257 ELTAELQELEEKLEELR-LEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDEL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1461 HVEREQQQESIKEISTRLQELQDK----EYEYLVMKSLN-------ETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQR 1529
Cdd:TIGR02168 336 AEELAELEEKLEELKEELESLEAEleelEAELEELESRLeeleeqlETLRSKVAQLELQIASLNNEIERLEARLERLEDR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1530 LNETLEEMKSVAKERDELRSveERLTADRDQLKKSLEETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNST 1609
Cdd:TIGR02168 416 RERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1610 LESIEIEKLKLTQQLNENLKE-----------MTLVAKENDDLKIMDEALREERDQLR-----------ESLRQTEAS-- 1665
Cdd:TIGR02168 494 LERLQENLEGFSEGVKALLKNqsglsgilgvlSELISVDEGYEAAIEAALGGRLQAVVvenlnaakkaiAFLKQNELGrv 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1666 -----DLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSD------------------------------------- 1703
Cdd:TIGR02168 574 tflplDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKalsyllggvlvvddldnalelakklrpgyrivtldgd 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1704 -------MNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEqglalskiemenlnlAQQIHQNLEEmksisk 1776
Cdd:TIGR02168 654 lvrpggvITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAE---------------LRKELEELEE------ 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1777 ERDDLKRMEEILRMEKDQLKDSLREAKfKAHQNYEETVQYGKGLLCGGEQHCTGRLREKCLRIEKLLKRYSEMANDYECL 1856
Cdd:TIGR02168 713 ELEQLRKELEELSRQISALRKDLARLE-AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1857 NRFSLDLEKETKTQKELSvTIKTKLSLPYTQTKEIEKLLTANqrcsmefHRILKKLKYVLSYITRIKEEQHEFINKfemA 1936
Cdd:TIGR02168 792 EQLKEELKALREALDELR-AELTLLNEEAANLRERLESLERR-------IAATERRLEDLEEQIEELSEDIESLAA---E 860
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 1958755384 1937 FIQEVEKQNELQIKIQSLSQ--TSNIPSRDSQSKLSQEMDLHIEEILKDFSEND 1988
Cdd:TIGR02168 861 IEELEELIEELESELEALLNerASLEEALALLRSELEELSEELRELESKRSELR 914
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1310-1736 |
2.60e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.85 E-value: 2.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1310 EALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELcek 1389
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLL--- 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1390 QEQLNIKETSEVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEIKILIKER--------EELRRAQEALH 1461
Cdd:COG4717 126 QLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLslateeelQDLAEELEELQ 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1462 VEREQQQESIKEISTRLQELQdKEYEYLVMKSLNETQGNKCEDLNQQLEAQkSSLEKVEMQNVNLTQRLNETLEEMKSVA 1541
Cdd:COG4717 206 QRLAELEEELEEAQEELEELE-EELEQLENELEAAALEERLKEARLLLLIA-AALLALLGLGGSLLSLILTIAGVLFLVL 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1542 ---------KERDELRSVEERLTADRDQLKKSLEETITKNQeLQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLES 1612
Cdd:COG4717 284 gllallfllLAREKASLGKEAEELQALPALEELEEEELEEL-LAALGLPPDLSPEELLELLDRIEELQELLREAEELEEE 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1613 IEIEKLkltQQLNENLKEMTLVAKENDDLKIMDEAlrEERDQLRESLRQTEA--SDLEKQEKLRIAHLDLKEHQETIERL 1690
Cdd:COG4717 363 LQLEEL---EQEIAALLAEAGVEDEEELRAALEQA--EEYQELKEELEELEEqlEELLGELEELLEALDEEELEEELEEL 437
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1958755384 1691 MGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEA 1736
Cdd:COG4717 438 EEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKA 483
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
891-1346 |
3.65e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.46 E-value: 3.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 891 LQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINmlkmkateemsdhlpikgregssdEVEQKLDGIDE 970
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYA------------------------ELQEELEELEE 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 971 EnlLAESAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKEniemSVENQEELRILRDELKR-Q 1049
Cdd:COG4717 103 E--LEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEE----LRELEEELEELEAELAElQ 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1050 QEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLENLQNEFRNQALALerV 1129
Cdd:COG4717 177 EELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLL--I 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1130 ETERLELAQKLHENYEKMESI-------------------------TKERNDLKELQESFEIEKKQLKEYAREMESAGLQ 1184
Cdd:COG4717 255 AAALLALLGLGGSLLSLILTIagvlflvlgllallflllarekaslGKEAEELQALPALEELEEEELEELLAALGLPPDL 334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1185 TKEQLNIAHANLKEYQEIIKELRGsiSEKEAQASSTQDTGKTNPASQGETPVPREQELLPDAEEARASAEKGSELEP-VE 1263
Cdd:COG4717 335 SPEELLELLDRIEELQELLREAEE--LEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEqLE 412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1264 EHSRTAHSL----TTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQ-----VECAQLKDDARRTLANHLETE 1334
Cdd:COG4717 413 ELLGELEELlealDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEedgelAELLQELEELKAELRELAEEW 492
|
490
....*....|..
gi 1958755384 1335 EELSLARCCLKE 1346
Cdd:COG4717 493 AALKLALELLEE 504
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
807-1058 |
3.90e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.69 E-value: 3.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 807 RQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEvraltqekn 886
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE--------- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 887 dLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKmKATEEMSDHLpikgregssDEVEQKLD 966
Cdd:COG4942 92 -IAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLK-YLAPARREQA---------EELRADLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 967 GIDEENLLAEsahtvvgsgedhgetEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEmsvENQEELRILRDEL 1046
Cdd:COG4942 161 ELAALRAELE---------------AERAELEALLAELEEERAALEALKAERQKLLARLEKELA---ELAAELAELQQEA 222
|
250
....*....|...
gi 1958755384 1047 KR-QQEIAAQEKD 1058
Cdd:COG4942 223 EElEALIARLEAE 235
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
807-1127 |
5.27e-06 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 51.06 E-value: 5.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 807 RQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKN 886
Cdd:COG4372 39 ELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELE 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 887 DLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKMKATEEMSDHLPIKGREGSSDEVEQKLD 966
Cdd:COG4372 119 ELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEK 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 967 GIDEENLLAESAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDEL 1046
Cdd:COG4372 199 EEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEEL 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1047 KRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLENLQNEFRNQALAL 1126
Cdd:COG4372 279 EIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLLDNDVLEL 358
|
.
gi 1958755384 1127 E 1127
Cdd:COG4372 359 L 359
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
622-1090 |
5.32e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.94 E-value: 5.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 622 LRSENLELKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSALVDgkgllsnlELEKRITDLQ 701
Cdd:TIGR04523 223 LKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK--------ELEKQLNQLK 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 702 KELNKEVEEKET-LQKEVHllSELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDL 780
Cdd:TIGR04523 295 SEISDLNNQKEQdWNKELK--SELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEI 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 781 AASQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREK---LERRDSSL 857
Cdd:TIGR04523 373 EKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEikdLTNQDSVK 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 858 QSAEKEKNLLTEKLQQTLEEvraLTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINML 937
Cdd:TIGR04523 453 ELIIKNLDNTRESLETQLKV---LSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKL 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 938 KMKATEEMSDhlpIKGREGSSDEVEQKLDGIDEENLLAESAHTVVGSGEDHGETE-EQRKIDSLLQENSRLQQTLESIIA 1016
Cdd:TIGR04523 530 ESEKKEKESK---ISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKkKQEEKQELIDQKEKEKKDLIKEIE 606
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958755384 1017 EKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVtekSEELSRAHERLAEIEEKLKEKNQKLQE 1090
Cdd:TIGR04523 607 EKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQI---KETIKEIRNKWPEIIKKIKESKTKIDD 677
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
797-1553 |
5.76e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 52.15 E-value: 5.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 797 LKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMlnqMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLE 876
Cdd:pfam12128 260 LSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEK---RDELNGELSAADAAVAKDRSELEALEDQHGAFLD 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 877 ---EVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQ-----EQLLNALESLKQHQETINMLKMKATEEMSDH 948
Cdd:pfam12128 337 adiETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRrskikEQNNRDIAGIKDKLAKIREARDRQLAVAEDD 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 949 LPIKGREGSSDEVEQKLDGIDEENLLAESAhtvvgsgedhgeteeqrkidsllqenSRLQQTLESIIAEKEqLKMDLKEN 1028
Cdd:pfam12128 417 LQALESELREQLEAGKLEFNEEEYRLKSRL--------------------------GELKLRLNQATATPE-LLLQLENF 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1029 IEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLV------------ 1096
Cdd:pfam12128 470 DERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLhflrkeapdweq 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1097 SIQEAMSEMQAKVTDLENLQNE--------FRNQALALERVET-ERLELAQKLHENYEKMES-ITKERNDLKELQESFEI 1166
Cdd:pfam12128 550 SIGKVISPELLHRTDLDPEVWDgsvggelnLYGVKLDLKRIDVpEWAASEEELRERLDKAEEaLQSAREKQAAAEEQLVQ 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1167 EKKQLKEYAREMESA--GLQTKE----QLNIAHANLK--------EYQEIIKELRGSIS------EKEAQASSTQDTGKT 1226
Cdd:pfam12128 630 ANGELEKASREETFArtALKNARldlrRLFDEKQSEKdkknkalaERKDSANERLNSLEaqlkqlDKKHQAWLEEQKEQK 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1227 NPASQGETPVPREQELLPDAEEARASAEKGSELEPVEEH-------------SRTAHSLTTEGIEMEILALTKKLEESQK 1293
Cdd:pfam12128 710 REARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAElkaletwykrdlaSLGVDPDVIAKLKREIRTLERKIERIAV 789
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1294 EISCLTK------------------ERSDLRRTQEALQVECAQLKDDARRTLANhLETEeelslarccLKEQENKIDSLI 1355
Cdd:pfam12128 790 RRQEVLRyfdwyqetwlqrrprlatQLSNIERAISELQQQLARLIADTKLRRAK-LEME---------RKASEKQQVRLS 859
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1356 VSLSQKEAELSSV-RVQLEVTTGELERKVQELCEKQEQLNIKETSEVQGKMSELDHIRAlLLTKDSALQSVESdRLRLNK 1434
Cdd:pfam12128 860 ENLRGLRCEMSKLaTLKEDANSEQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHFKN-VIADHSGSGLAET-WESLRE 937
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1435 QLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEYLvmkslnETQGNKCEDLNQQLEAQKS 1514
Cdd:pfam12128 938 EDHYQNDKGIRLLDYRKLVPYLEQWFDVRVPQSIMVLREQVSILGVDLTEFYDVL------ADFDRRIASFSRELQREVG 1011
|
810 820 830 840
....*....|....*....|....*....|....*....|.
gi 1958755384 1515 SLEKVE-MQNVNLTQRLN-ETLEEMKSVAKERDELRSVEER 1553
Cdd:pfam12128 1012 EEAFFEgVSESAVRIRSKvSELEYWPELRVFVKAFRLWKSD 1052
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1434-1803 |
5.87e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.69 E-value: 5.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1434 KQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEylvmkslnetqgnkcedlnQQLEAQK 1513
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKL-------------------LQLLPLY 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1514 SSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEET-ITKNQELQEKGHQLSQVKADLRET 1592
Cdd:COG4717 132 QELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLsLATEEELQDLAEELEELQQRLAEL 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1593 MDQMEQLKEQLEAQNSTLEsiEIEKLKLTQQLNENLKEMT-----------------------------------LVAKE 1637
Cdd:COG4717 212 EEELEEAQEELEELEEELE--QLENELEAAALEERLKEARlllliaaallallglggsllsliltiagvlflvlgLLALL 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1638 NDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSDMN-----MELERAN 1712
Cdd:COG4717 290 FLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEeleeeLQLEELE 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1713 TRLQEKVQELKASELQLLKSKVEAGETKKQLKEQgLALSKIEMENLNLAQQIHQNLEEMKSISKERDDLKRMEEILRMEK 1792
Cdd:COG4717 370 QEIAALLAEAGVEDEEELRAALEQAEEYQELKEE-LEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEEL 448
|
410
....*....|.
gi 1958755384 1793 DQLKDSLREAK 1803
Cdd:COG4717 449 EELREELAELE 459
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1411-1795 |
6.75e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 51.88 E-value: 6.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1411 IRALLLTKDsALQSVESDRLRLNKQLEESQ-----------EEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQ 1479
Cdd:PRK04863 239 LRENRMTLE-AIRVTQSDRDLFKHLITESTnyvaadymrhaNERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELA 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1480 ELQDKEyeylvmkslnetqgnkcEDLNQQLEAQKSSL----------EKVEMQNVNLtQRLNETLEEMKSVAKERDELR- 1548
Cdd:PRK04863 318 ELNEAE-----------------SDLEQDYQAASDHLnlvqtalrqqEKIERYQADL-EELEERLEEQNEVVEEADEQQe 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1549 SVEERLTA---DRDQLKKSLEETITKNQELQEKGHQLSQVKADLRE----------TMDQMEQLKEQLEAQnstLESIEI 1615
Cdd:PRK04863 380 ENEARAEAaeeEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERakqlcglpdlTADNAEDWLEEFQAK---EQEATE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1616 EKLKLTQQLN--ENLKE-----MTLVAKenddlkIMDEALREE-RDQLRESLRQ--TEASDLEKQEKLRIAHLDLK---E 1682
Cdd:PRK04863 457 ELLSLEQKLSvaQAAHSqfeqaYQLVRK------IAGEVSRSEaWDVARELLRRlrEQRHLAEQLQQLRMRLSELEqrlR 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1683 HQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLN--- 1759
Cdd:PRK04863 531 QQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAaqd 610
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1958755384 1760 ------------------LAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQL 1795
Cdd:PRK04863 611 alarlreqsgeefedsqdVTEYMQQLLERERELTVERDELAARKQALDEEIERL 664
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
800-1336 |
7.40e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 51.26 E-value: 7.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 800 LHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVR 879
Cdd:pfam05483 213 MHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKD 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 880 ALTQEKNDLK-QLQESLQTERdQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINML--KMKAT-------------- 942
Cdd:pfam05483 293 HLTKELEDIKmSLQRSMSTQK-ALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVvtEFEATtcsleellrteqqr 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 943 -EEMSDHLPIKGRE--GSSDEVEQKLDGIDEENLLAESAHTVVgsGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKE 1019
Cdd:pfam05483 372 lEKNEDQLKIITMElqKKSSELEEMTKFKNNKEVELEELKKIL--AEDEKLLDEKKQFEKIAEELKGKEQELIFLLQARE 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1020 QLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAeieEKLKEKNQKLQETQQQLVSIQ 1099
Cdd:pfam05483 450 KEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELT---QEASDMTLELKKHQEDIINCK 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1100 EAMSEMQAKVTDLENLQNEFRNQALAL-ERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLK------ 1172
Cdd:pfam05483 527 KQEERMLKQIENLEEKEMNLRDELESVrEEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKkqienk 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1173 -EYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSIsekeaqASSTQDTGKTNPASQGETPVPR--EQELLPDAEEA 1249
Cdd:pfam05483 607 nKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELEL------ASAKQKFEEIIDNYQKEIEDKKisEEKLLEEVEKA 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1250 RASAEKGSELEPvEEHSRTAHSLTTEGIEMEILA--LTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDArRTL 1327
Cdd:pfam05483 681 KAIADEAVKLQK-EIDKRCQHKIAEMVALMEKHKhqYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAEL-LSL 758
|
....*....
gi 1958755384 1328 ANHLETEEE 1336
Cdd:pfam05483 759 KKQLEIEKE 767
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
1406-1736 |
7.88e-06 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 50.99 E-value: 7.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1406 SELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEAlhvEREQQQESIKEISTRLQELQDke 1485
Cdd:PRK04778 105 HEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLA---NRFSFGPALDELEKQLENLEE-- 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1486 yEYLVMKSLNEtQGNKCE------DLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKER-------DELrSVEE 1552
Cdd:PRK04778 180 -EFSQFVELTE-SGDYVEareildQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELveegyhlDHL-DIEK 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1553 RLTADRDQLKKS--------LEETITKNQELQEKGHQLSQV-------KADLRETMDQMEQLKEQLEAQNSTLeSIEIEK 1617
Cdd:PRK04778 257 EIQDLKEQIDENlalleeldLDEAEEKNEEIQERIDQLYDIlerevkaRKYVEKNSDTLPDFLEHAKEQNKEL-KEEIDR 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1618 LKLTQQLNENLKEMTlvakenddlkimdEALREERDQLRESLRQteasDLEKQEKLRIAHLDLKEHQETIERLMGSVAKR 1697
Cdd:PRK04778 336 VKQSYTLNESELESV-------------RQLEKQLESLEKQYDE----ITERIAEQEIAYSELQEELEEILKQLEEIEKE 398
|
330 340 350
....*....|....*....|....*....|....*....
gi 1958755384 1698 TEEVSDMNMELERANTRLQEKVQELKaSELQLLKSKVEA 1736
Cdd:PRK04778 399 QEKLSEMLQGLRKDELEAREKLERYR-NKLHEIKRYLEK 436
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1422-1595 |
8.68e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 49.54 E-value: 8.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1422 LQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEYlvMKSLNETQGNK 1501
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKY--EEQLGNVRNNK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1502 cedlnqQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETItknQELQEKGHQ 1581
Cdd:COG1579 90 ------EYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEEL---AELEAELEE 160
|
170
....*....|....
gi 1958755384 1582 LSQVKADLRETMDQ 1595
Cdd:COG1579 161 LEAEREELAAKIPP 174
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
564-898 |
8.94e-06 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 51.01 E-value: 8.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 564 EKEDQIKELQRYIDAQKSETTKTDLSYSSEATEDLKQamrtlsdldtvALDAKRESAFlrsENLELKERINELSDSCKQM 643
Cdd:PLN03229 433 ELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKK-----------EIDLEYTEAV---IAMGLQERLENLREEFSKA 498
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 644 ENGIQMYQRQLEAK-KQVQADLEKELQLAFQEIS---KLSALVDGKGLLSNLELEKRITDLQKELNKEVeeketlqKEVH 719
Cdd:PLN03229 499 NSQDQLMHPVLMEKiEKLKDEFNKRLSRAPNYLSlkyKLDMLNEFSRAKALSEKKSKAEKLKAEINKKF-------KEVM 571
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 720 LLSELKslpSEVETLRRELHEkseelcvittereklfSEMAHKDSRIQGLLEEIGNTKDDLAASQLS-QRSSDEECQALK 798
Cdd:PLN03229 572 DRPEIK---EKMEALKAEVAS----------------SGASSGDELDDDLKEKVEKMKKEIELELAGvLKSMGLEVIGVT 632
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 799 SLHVELKHRQ--EEVLEESERVKQELSQKTQELAQKTaegqEMLNQMEELREKLERRDSSLQSAEKEKnllTEKLQQTLE 876
Cdd:PLN03229 633 KKNKDTAEQTppPNLQEKIESLNEEINKKIERVIRSS----DLKSKIELLKLEVAKASKTPDVTEKEK---IEALEQQIK 705
|
330 340
....*....|....*....|..
gi 1958755384 877 EVRALTQEKNDLKQLQESLQTE 898
Cdd:PLN03229 706 QKIAEALNSSELKEKFEELEAE 727
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
651-886 |
1.11e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 1.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 651 QRQLEAKKQVQADLEKELQLAFQEISKLSALVDgkgllsnlELEKRITDLQKELNKEVEEKETLQKEvhllseLKSLPSE 730
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLA--------ALERRIAALARRIRALEQELAALEAE------LAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 731 VETLRRELHEKSEELcvittEREKLFSEMAHKDSRIQGLL--EEIGNTKDDLAASQLSQRSSDEECQALKSLHVELKHRQ 808
Cdd:COG4942 92 IAELRAELEAQKEEL-----AELLRALYRLGRQPPLALLLspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 809 EEVLEES---ERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEK 885
Cdd:COG4942 167 AELEAERaelEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
.
gi 1958755384 886 N 886
Cdd:COG4942 247 G 247
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1496-1895 |
1.18e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.83 E-value: 1.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1496 ETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQEL 1575
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEI 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1576 QEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEiEKLKLTQQLNENLKEMtlvakenddlkimdEALREERDQL 1655
Cdd:PRK03918 241 EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELE-EKVKELKELKEKAEEY--------------IKLSEFYEEY 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1656 RESLRqteasdlekqeklriahlDLKEHQETIERLMGSVAKRTEEVSDMNMELErantRLQEKVQELKaSELQLLKSKVE 1735
Cdd:PRK03918 306 LDELR------------------EIEKRLSRLEEEINGIEERIKELEEKEERLE----ELKKKLKELE-KRLEELEERHE 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1736 AGETKKQLKEQGLALSK-IEMENLNLAQQIHQNLEEMK-SISKERDDLKRMEEILRMEKDQLKDSLREAKfKAHqnyeet 1813
Cdd:PRK03918 363 LYEEAKAKKEELERLKKrLTGLTPEKLEKELEELEKAKeEIEEEISKITARIGELKKEIKELKKAIEELK-KAK------ 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1814 vqyGKGLLCG---GEQHCTGRLREKCLRIEKLLKRYSEMANDYECLNRFSLDLEKETKTQKELSVTIKTklslpYTQTKE 1890
Cdd:PRK03918 436 ---GKCPVCGrelTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKEL-----AEQLKE 507
|
....*
gi 1958755384 1891 IEKLL 1895
Cdd:PRK03918 508 LEEKL 512
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1344-1803 |
1.23e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 50.67 E-value: 1.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1344 LKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCEKQEQLN-----IKETSEVQGKMSELDHIRALLLTK 1418
Cdd:PRK01156 192 LKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNelsslEDMKNRYESEIKTAESDLSMELEK 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1419 DSALQSVESDRLRL-NKQLEESQEEIKILIKEREELRRAQEALHvEREQQQESIKEISTRLQELQDKEYEYLVMKSlnet 1497
Cdd:PRK01156 272 NNYYKELEERHMKIiNDPVYKNRNYINDYFKYKNDIENKKQILS-NIDAEINKYHAIIKKLSVLQKDYNDYIKKKS---- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1498 qgnKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQE 1577
Cdd:PRK01156 347 ---RYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISS 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1578 KGHQLSQVKADLRETMDQMEQLKEQLEAQN------STLESIEIEKLkltqqLNENLKEMTLVAKENDDLKIMDEALREE 1651
Cdd:PRK01156 424 KVSSLNQRIRALRENLDELSRNMEMLNGQSvcpvcgTTLGEEKSNHI-----INHYNEKKSRLEEKIREIEIEVKDIDEK 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1652 RDQLRESLRQTEASDLEKQE----KLRIAHLDLKEHQETIERLMGSVAKRTEEVSDMNM----ELERANTRLQEKVQELK 1723
Cdd:PRK01156 499 IVDLKKRKEYLESEEINKSIneynKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSlkleDLDSKRTSWLNALAVIS 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1724 ASELQLLKSKVEagETKKQLKEQGLALSKIEME-------NLNLAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQLK 1796
Cdd:PRK01156 579 LIDIETNRSRSN--EIKKQLNDLESRLQEIEIGfpddksyIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYK 656
|
....*..
gi 1958755384 1797 DSLREAK 1803
Cdd:PRK01156 657 KQIAEID 663
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1419-1639 |
1.29e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.21 E-value: 1.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1419 DSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQdkeyeylvmKSLNETQ 1498
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAE---------AEIEERR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1499 gnkcEDLNQQLEAQKSSLEKVEMQNVNLTQR-LNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQE 1577
Cdd:COG3883 86 ----EELGERARALYRSGGSVSYLDVLLGSEsFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEA 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958755384 1578 KGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESieiEKLKLTQQLNENLKEMTLVAKEND 1639
Cdd:COG3883 162 LKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEA---QLAELEAELAAAEAAAAAAAAAAA 220
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
546-1158 |
1.34e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.61 E-value: 1.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 546 REEKDQENELSSKVELLKEKEDQIKELQRYIDAQKSeTTKTDLSYSSEATEDLKQAMRTLSDLD--TVALDAKRESAFlR 623
Cdd:pfam12128 276 SRQEERQETSAELNQLLRTLDDQWKEKRDELNGELS-AADAAVAKDRSELEALEDQHGAFLDADieTAAADQEQLPSW-Q 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 624 SENLELKERINELSDSCKQMEngiQMYQRQLEAKKQ----VQADLEKELQLAFQEISKLSALVDG--KGLLSNL--ELEK 695
Cdd:pfam12128 354 SELENLEERLKALTGKHQDVT---AKYNRRRSKIKEqnnrDIAGIKDKLAKIREARDRQLAVAEDdlQALESELreQLEA 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 696 RITDL---QKELNKEVEEKETLQKEVHLLSELKslpSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEE 772
Cdd:pfam12128 431 GKLEFneeEYRLKSRLGELKLRLNQATATPELL---LQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEA 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 773 IGntkdDLAASQLSQRSSDEECQAL------------------------KSLHVELKHRQEEVLEESE-RVKQELSQKTQ 827
Cdd:pfam12128 508 LR----QASRRLEERQSALDELELQlfpqagtllhflrkeapdweqsigKVISPELLHRTDLDPEVWDgSVGGELNLYGV 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 828 ELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKL--------QQTLEEVRALTQEKN---DLKQL---QE 893
Cdd:pfam12128 584 KLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLvqangeleKASREETFARTALKNarlDLRRLfdeKQ 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 894 SLQTERDQLRSDIQDTVNMNIDTQEQLLNALE-SLKQHQETINMLKMKATEEMSDHLpiKGREGSSDEveqKLDGIDEEN 972
Cdd:pfam12128 664 SEKDKKNKALAERKDSANERLNSLEAQLKQLDkKHQAWLEEQKEQKREARTEKQAYW--QVVEGALDA---QLALLKAAI 738
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 973 LLAESAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEI 1052
Cdd:pfam12128 739 AARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSN 818
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1053 AAQEkdhVTEKSEELSRaheRLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLENLQNEFRNQALALERVETE 1132
Cdd:pfam12128 819 IERA---ISELQQQLAR---LIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATLKEDANSEQAQGSIGERL 892
|
650 660
....*....|....*....|....*.
gi 1958755384 1133 RlELAQKLHENYEKMESITKERNDLK 1158
Cdd:pfam12128 893 A-QLEDLKLKRDYLSESVKKYVEHFK 917
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
711-1104 |
1.37e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 50.68 E-value: 1.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 711 KETLQKEVHLLSELKSLPSEVETLRRELHEKSEELcvitTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAAsqLSQRSS 790
Cdd:PRK11281 38 EADVQAQLDALNKQKLLEAEDKLVQQDLEQTLALL----DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEA--LKDDND 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 791 DEECQALKSLHV-ELKHRQEEVLEESERVKQEL--------SQKTQ-ELAQktAEGQEMLNQMEELReklerrdSSLQSA 860
Cdd:PRK11281 112 EETRETLSTLSLrQLESRLAQTLDQLQNAQNDLaeynsqlvSLQTQpERAQ--AALYANSQRLQQIR-------NLLKGG 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 861 EKEKNLLTEKLQQTLEEVRALTQEKNDLK--------QLQESLQTERDQLrsdiqdtvNMNIDTQEQLLNALeslkqhQE 932
Cdd:PRK11281 183 KVGGKALRPSQRVLLQAEQALLNAQNDLQrkslegntQLQDLLQKQRDYL--------TARIQRLEHQLQLL------QE 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 933 TINMLKMKATEEMSDHLpikgregssdEVEQKLDGIDEENLLA-ESAHTVVGSGEDHGETEeqrKIDSLLQENSRLQQTL 1011
Cdd:PRK11281 249 AINSKRLTLSEKTVQEA----------QSQDEAARIQANPLVAqELEINLQLSQRLLKATE---KLNTLTQQNLRVKNWL 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1012 ES-----------------------IIAEKEQLKMDLKENIEMSVE------NQEELRILRDELKRQQE-IAAQEKDHVT 1061
Cdd:PRK11281 316 DRltqsernikeqisvlkgslllsrILYQQQQALPSADLIEGLADRiadlrlEQFEINQQRDALFQPDAyIDKLEAGHKS 395
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1958755384 1062 EKSEELSRAHERLAEIEEKLKEK------NQ-----KLQETQQQLVSIQEAMSE 1104
Cdd:PRK11281 396 EVTDEVRDALLQLLDERRELLDQlnkqlnNQlnlaiNLQLNQQQLLSVSDSLQS 449
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
705-1222 |
1.56e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.40 E-value: 1.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 705 NKEVEEKETLQKEVHLLSELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQ 784
Cdd:TIGR04523 30 KQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKIN 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 785 LSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKE- 863
Cdd:TIGR04523 110 SEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNi 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 864 ---------KNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALEslkQHQETI 934
Cdd:TIGR04523 190 dkiknkllkLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKD---EQNKIK 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 935 NMLKMKATEEMSDHLPIKGREGSSDEVEQKLDGIDEEnllAESAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQTLESI 1014
Cdd:TIGR04523 267 KQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQ---KEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQ 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1015 IAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRaheRLAEIEEKLKEKNQKLQETQQQ 1094
Cdd:TIGR04523 344 ISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLES---KIQNQEKLNQQKDEQIKKLQQE 420
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1095 LVSIQEAMSEMQAKVTDLENLQNEFRNQALALERVETERLELAQKLHENYEKME-SITKERNDLKELQESFEIEKKQLKE 1173
Cdd:TIGR04523 421 KELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSrSINKIKQNLEQKQKELKSKEKELKK 500
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 1958755384 1174 YAREMEsaglQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQD 1222
Cdd:TIGR04523 501 LNEEKK----ELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLED 545
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
752-1295 |
1.69e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 50.34 E-value: 1.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 752 REKL--FSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQA----------LKSLHVELKHRQEEVLEESERVK 819
Cdd:PRK04863 499 RELLrrLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRlgknlddedeLEQLQEELEARLESLSESVSEAR 578
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 820 Q----------ELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSaekeknlLTEKLQQTLEEVRALTQEKNDLK 889
Cdd:PRK04863 579 ErrmalrqqleQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQD-------VTEYMQQLLERERELTVERDELA 651
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 890 QLQESLQTERDQLR----------------------SDIQD---------------------TVNMNIDTQEQLLN---- 922
Cdd:PRK04863 652 ARKQALDEEIERLSqpggsedprlnalaerfggvllSEIYDdvsledapyfsalygparhaiVVPDLSDAAEQLAGledc 731
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 923 ---------ALESLKQHQETINMLKMKATEEMSD---------HLPIKGREGSsdevEQKLDGIDEE-NLLAESAHTVvg 983
Cdd:PRK04863 732 pedlyliegDPDSFDDSVFSVEELEKAVVVKIADrqwrysrfpEVPLFGRAAR----EKRIEQLRAErEELAERYATL-- 805
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 984 sgedhgeTEEQRKIDSLLQENSRLQQTLESI--IAEKEQlkmDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVT 1061
Cdd:PRK04863 806 -------SFDVQKLQRLHQAFSRFIGSHLAVafEADPEA---ELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLS 875
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1062 EKSEELSRAH--------ERLAEIEEKLKEKNQ----------KLQETQQQLVSIQ---EAMSEMQAKVTDLENLQNEFR 1120
Cdd:PRK04863 876 ALNRLLPRLNlladetlaDRVEEIREQLDEAEEakrfvqqhgnALAQLEPIVSVLQsdpEQFEQLKQDYQQAQQTQRDAK 955
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1121 NQALALERVeterleLAQKLHENYEKMESITKERNDLKElqesfeiekkQLKEYAREMESAGLQTKEQLNIAHANLKEYQ 1200
Cdd:PRK04863 956 QQAFALTEV------VQRRAHFSYEDAAEMLAKNSDLNE----------KLRQRLEQAEQERTRAREQLRQAQAQLAQYN 1019
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1201 EIIKELRGSISEKeaqasstQDTGKTNPASQGETPVPreqelLPDAEEARASAEKgSELEP--VEEHSRTAHSLTTEG-I 1277
Cdd:PRK04863 1020 QVLASLKSSYDAK-------RQMLQELKQELQDLGVP-----ADSGAEERARARR-DELHArlSANRSRRNQLEKQLTfC 1086
|
650
....*....|....*...
gi 1958755384 1278 EMEILALTKKLEESQKEI 1295
Cdd:PRK04863 1087 EAEMDNLTKKLRKLERDY 1104
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
550-1294 |
1.69e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 50.34 E-value: 1.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 550 DQENELSSKVELLKEKEDQIKELQRYIDAQK--SETTKTDLSYSSEATEDLKQAMRT-------LSDLD--TVALDAK-- 616
Cdd:COG3096 289 ELRRELFGARRQLAEEQYRLVEMARELEELSarESDLEQDYQAASDHLNLVQTALRQqekieryQEDLEelTERLEEQee 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 617 --RESAFLRSENLELKERINELSDSCK------------QMENGIQmYQRQLEAKKQVQADLE---------KELQLAFQ 673
Cdd:COG3096 369 vvEEAAEQLAEAEARLEAAEEEVDSLKsqladyqqaldvQQTRAIQ-YQQAVQALEKARALCGlpdltpenaEDYLAAFR 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 674 EisKLSALVDgkgllSNLELEKRITD-------------LQKELNKEVEEKETLQKEVHLL---SELKSLPSEVETLRRE 737
Cdd:COG3096 448 A--KEQQATE-----EVLELEQKLSVadaarrqfekayeLVCKIAGEVERSQAWQTARELLrryRSQQALAQRLQQLRAQ 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 738 LHEKSEELcvittereklfsemaHKDSRIQGLLEEigntkddLAASQLSQRSSDEEcqaLKSLHVELKHRQEEVLEESER 817
Cdd:COG3096 521 LAELEQRL---------------RQQQNAERLLEE-------FCQRIGQQLDAAEE---LEELLAELEAQLEELEEQAAE 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 818 VKQELSQKTQELAQKTAEGQEmLNQME----ELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQE 893
Cdd:COG3096 576 AVEQRSELRQQLEQLRARIKE-LAARApawlAAQDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAARKQ 654
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 894 SLQTERDQLR----------------------SDIQDTVNMNiDTQEqlLNALESLKQHqeTINMLKMKATEEMSDHLP- 950
Cdd:COG3096 655 ALESQIERLSqpggaedprllalaerlggvllSEIYDDVTLE-DAPY--FSALYGPARH--AIVVPDLSAVKEQLAGLEd 729
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 951 -------IKGREGSSDE---VEQKLDG---------------IDEENLL---AESAHTVVGSGEDHGETEEQRKIDSLLQ 1002
Cdd:COG3096 730 cpedlylIEGDPDSFDDsvfDAEELEDavvvklsdrqwrysrFPEVPLFgraAREKRLEELRAERDELAEQYAKASFDVQ 809
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1003 ENSRLQQTLESIIAEKEQLKMD------LKENIEMSVENQEELRILRDELKRQQEIAAQEK------------------D 1058
Cdd:COG3096 810 KLQRLHQAFSQFVGGHLAVAFApdpeaeLAALRQRRSELERELAQHRAQEQQLRQQLDQLKeqlqllnkllpqanlladE 889
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1059 HVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQ---EAMSEMQAKVTDLENLQNEFRNQALALERVeterle 1135
Cdd:COG3096 890 TLADRLEELREELDAAQEAQAFIQQHGKALAQLEPLVAVLQsdpEQFEQLQADYLQAKEQQRRLKQQIFALSEV------ 963
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1136 LAQKLHENYEKMESITKERNDLKElqesfeiekkQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEA 1215
Cdd:COG3096 964 VQRRPHFSYEDAVGLLGENSDLNE----------KLRARLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQ 1033
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1216 Q----ASSTQDTGKTNPASQGETPVPREQELlpdAEEARASAEKGSELEpveehsrtahslTTEG-IEMEILALTKKLEE 1290
Cdd:COG3096 1034 TlqelEQELEELGVQADAEAEERARIRRDEL---HEELSQNRSRRSQLE------------KQLTrCEAEMDSLQKRLRK 1098
|
....
gi 1958755384 1291 SQKE 1294
Cdd:COG3096 1099 AERD 1102
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
558-1081 |
1.78e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 1.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 558 KVELLKEKEDQIKELQRYIDAQKSETTKTdlsySSEATEDLKQAMRTLSDLDTVALDakresaflrsenlELKERINELS 637
Cdd:COG4913 289 RLELLEAELEELRAELARLEAELERLEAR----LDALREELDELEAQIRGNGGDRLE-------------QLEREIERLE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 638 DSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISklSALVDGKGLLSnlELEKRITDLQKELNKEVEEKETLQKE 717
Cdd:COG4913 352 RELEERERRRARLEALLAALGLPLPASAEEFAALRAEAA--ALLEALEEELE--ALEEALAEAEAALRDLRRELRELEAE 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 718 VHLLSELKS-LPSEVETLRRELheksEELCVITTEREKLFSE---MAHKDSRIQGLLE-EIGNTKDDL--------AAS- 783
Cdd:COG4913 428 IASLERRKSnIPARLLALRDAL----AEALGLDEAELPFVGElieVRPEEERWRGAIErVLGGFALTLlvppehyaAALr 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 784 -----QLSQRssdeecqaLKSLHVELKHRQEEVLEESER----------------VKQELSQK--------TQELAQK-- 832
Cdd:COG4913 504 wvnrlHLRGR--------LVYERVRTGLPDPERPRLDPDslagkldfkphpfrawLEAELGRRfdyvcvdsPEELRRHpr 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 833 --TAEGqeMLNQMEELREK----LERRDSSL-QSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRsD 905
Cdd:COG4913 576 aiTRAG--QVKGNGTRHEKddrrRIRSRYVLgFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQ-R 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 906 IQDTVNMNIDTQeQLLNALESLKQHQETInmlkmkateemsdhlpikgREGSSD--EVEQKLDGIDEEnllaesahtvvg 983
Cdd:COG4913 653 LAEYSWDEIDVA-SAEREIAELEAELERL-------------------DASSDDlaALEEQLEELEAE------------ 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 984 sgedhgETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSvenQEELRILRDELKRQQEIAAQEKDHVTEK 1063
Cdd:COG4913 701 ------LEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLA---RLELRALLEERFAAALGDAVERELRENL 771
|
570
....*....|....*...
gi 1958755384 1064 SEELSRAHERLAEIEEKL 1081
Cdd:COG4913 772 EERIDALRARLNRAEEEL 789
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
550-1070 |
1.88e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.15 E-value: 1.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 550 DQENELSSKVELLKEKEDQIKELQryidaQKSETTKTDLSYSSEATEDLKQAMRTLSDLDTvALDAKRESAFLRSENLEL 629
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQ-----EELEELEEELEELEAELEELREELEKLEKLLQ-LLPLYQELEALEAELAEL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 630 KERINELSDSCKQMENgiqmYQRQLEAKKQVQADLEKELQLAFQEISkLSALVDGKGLLSNLE-LEKRITDLQKELNKEV 708
Cdd:COG4717 145 PERLEELEERLEELRE----LEEELEELEAELAELQEELEELLEQLS-LATEEELQDLAEELEeLQQRLAELEEELEEAQ 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 709 EEKETLQKEVHLLSELKSLPSEVETLRRELHEKSEE--LCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLS 786
Cdd:COG4717 220 EELEELEEELEQLENELEAAALEERLKEARLLLLIAaaLLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKAS 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 787 QRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRdsslQSAEKEKNL 866
Cdd:COG4717 300 LGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLE----ELEQEIAAL 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 867 LTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVN-MNIDTQEQLLNALESLKQHQETINMLKMKATEEM 945
Cdd:COG4717 376 LAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEElLEALDEEELEEELEELEEELEELEEELEELREEL 455
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 946 SDHLPIKGREGSSDEVEQKLDgiDEENLLAESAhtvvgsgedhgETEEQRKIDSLLQENsrLQQTLESIIAEKEQLKMDL 1025
Cdd:COG4717 456 AELEAELEQLEEDGELAELLQ--ELEELKAELR-----------ELAEEWAALKLALEL--LEEAREEYREERLPPVLER 520
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 1958755384 1026 KENIEMSVENQEELRILRDElkrQQEIAAQEKDHVTEKSEELSRA 1070
Cdd:COG4717 521 ASEYFSRLTDGRYRLIRIDE---DLSLKVDTEDGRTRPVEELSRG 562
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
894-1222 |
1.95e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 50.29 E-value: 1.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 894 SLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKMKATEEMSDHlpikgrEGSSDEVEQKLDGIDEENL 973
Cdd:PLN02939 43 SSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKSTSSDDDH------NRASMQRDEAIAAIDNEQQ 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 974 LAESAHTVVGSG--EDHGETEEQRKIDSLLQENSRLQ--QTLESIIAEKEQLK-------MDLKEN---IEMSVENQEEL 1039
Cdd:PLN02939 117 TNSKDGEQLSDFqlEDLVGMIQNAEKNILLLNQARLQalEDLEKILTEKEALQgkinileMRLSETdarIKLAAQEKIHV 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1040 RILRDEL-KRQQEIA---AQEKDHVTEKSEELSRAHER---LAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDL 1112
Cdd:PLN02939 197 EILEEQLeKLRNELLirgATEGLCVHSLSKELDVLKEEnmlLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLREL 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1113 EN---------LQNEFRNQALALERVETER----------------LELAQKLHENYEKMESITKERNDLKELQESFEIE 1167
Cdd:PLN02939 277 ESkfivaqedvSKLSPLQYDCWWEKVENLQdlldratnqvekaalvLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELL 356
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1958755384 1168 KKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSiSEKEAQASSTQD 1222
Cdd:PLN02939 357 QQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEE-SKKRSLEHPADD 410
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
497-1119 |
2.02e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.02 E-value: 2.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 497 ENLESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKEKNELEEFEFLEQREEKdqeNELSSKVELLKEKEDQIKELQRyi 576
Cdd:TIGR04523 57 KNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKIN---SEIKNDKEQKNKLEVELNKLEK-- 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 577 daQKSETTKTDLSYSSEATEDLKQAMRTLSDLDTvaldakresafLRSENLELKERINELSDSCKQMENGIQMYQRQLEA 656
Cdd:TIGR04523 132 --QKKENKKNIDKFLTEIKKKEKELEKLNNKYND-----------LKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLK 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 657 KKQVQADLEKELQLAFQEISKLSALVDGKGLLSN--LELEKRITDLQKELNKEVEE-KETLQKEVHLLSELKSLPSEVET 733
Cdd:TIGR04523 199 LELLLSNLKKKIQKNKSLESQISELKKQNNQLKDniEKKQQEINEKTTEISNTQTQlNQLKDEQNKIKKQLSEKQKELEQ 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 734 LRRELHEKSEELCVITTEREKLFSEmaHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQALKSLHVELKHRQEEVLE 813
Cdd:TIGR04523 279 NNKKIKELEKQLNQLKSEISDLNNQ--KEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSES 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 814 ESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQE 893
Cdd:TIGR04523 357 ENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETII 436
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 894 SLQTERDQLRSDIQD---TVNMNIDTQEQLLNALESLKQHQETINM-LKMKATEEMSDHLPIKGREGSSDEVEQKLDGID 969
Cdd:TIGR04523 437 KNNSEIKDLTNQDSVkelIIKNLDNTRESLETQLKVLSRSINKIKQnLEQKQKELKSKEKELKKLNEEKKELEEKVKDLT 516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 970 EENLLAESAHTVVGSGEDHGETEEQRKIDSLLQENSRL-QQTLESIIAEKEQLKMDLKENIEMSVENQEELRIL------ 1042
Cdd:TIGR04523 517 KKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELkKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELidqkek 596
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1043 -RDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQE----TQQQLVSIQEAMSEMQAKVTDLENLQN 1117
Cdd:TIGR04523 597 eKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQevkqIKETIKEIRNKWPEIIKKIKESKTKID 676
|
..
gi 1958755384 1118 EF 1119
Cdd:TIGR04523 677 DI 678
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
727-1067 |
2.09e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 49.51 E-value: 2.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 727 LPSEVETLRRELHEKSEELCVITTEREKLFSEMAHK----DSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQALKSLHV 802
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDreqwERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 803 ELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALT 882
Cdd:pfam07888 112 ELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLS 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 883 QEKNDLKQLQESLQTERDQLRSDI---QDTVNMNIDTQEQLLNALESLKQHQETINMLKMKAT---EEMSDHLPIKGReG 956
Cdd:pfam07888 192 KEFQELRNSLAQRDTQVLQLQDTIttlTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEglgEELSSMAAQRDR-T 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 957 SSDEVEQKLDGIDEENLLAE-SAHTVVGSGEDHGETE--------EQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKE 1027
Cdd:pfam07888 271 QAELHQARLQAAQLTLQLADaSLALREGRARWAQEREtlqqsaeaDKDRIEKLSAELQRLEERLQEERMEREKLEVELGR 350
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1958755384 1028 NIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEEL 1067
Cdd:pfam07888 351 EKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQEL 390
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
534-1108 |
2.21e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 49.74 E-value: 2.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 534 KNELEEFEFLEQREEKDQENELSSKVELLKEKEDQIKELQRYIDA-QKSETTKTdlSYSSEATEDLKQAMRTLSDLDTVA 612
Cdd:pfam05557 15 QNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLlEKREAEAE--EALREQAELNRLKKKYLEALNKKL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 613 LDAKRESAFLRSENLELKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSALVDgkgllSNLE 692
Cdd:pfam05557 93 NEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQS-----SLAE 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 693 LEKRITDLQKELNKEVEEKETLQKevhLLSELKSLPsEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRiqglLEE 772
Cdd:pfam05557 168 AEQRIKELEFEIQSQEQDSEIVKN---SKSELARIP-ELEKELERLREHNKHLNENIENKLLLKEEVEDLKRK----LER 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 773 IGNTKDDLAASQLSQRSSDEECQALKSLH----------VELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQ 842
Cdd:pfam05557 240 EEKYREEAATLELEKEKLEQELQSWVKLAqdtglnlrspEDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQE 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 843 MEELREKLErrdsSLQSAEKEKNLLTEKLQQtleEVRALTQEKNDLKQLQESLQTE------RDQLRSDIQDTVNMNIDT 916
Cdd:pfam05557 320 LAQYLKKIE----DLNKKLKRHKALVRRLQR---RVLLLTKERDGYRAILESYDKEltmsnySPQLLERIEEAEDMTQKM 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 917 QEQLLNALESLKQHQETINMLKMKATeemsdhlpikgregssdEVEQKLDGIDEENLLAESAHTvvgsgeDHGETEEQRK 996
Cdd:pfam05557 393 QAHNEEMEAQLSVAEEELGGYKQQAQ-----------------TLERELQALRQQESLADPSYS------KEEVDSLRRK 449
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 997 IDSLLQENSRLQQTlesiiaekeqlkmdlKENIEMSVENQEelriLRDELKRQQEIAAQEKDHVTEKSEELSRA-HERLA 1075
Cdd:pfam05557 450 LETLELERQRLREQ---------------KNELEMELERRC----LQGDYDPKKTKVLHLSMNPAAEAYQQRKNqLEKLQ 510
|
570 580 590
....*....|....*....|....*....|...
gi 1958755384 1076 EIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAK 1108
Cdd:pfam05557 511 AEIERLKRLLKKLEDDLEQVLRLPETTSTMNFK 543
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1418-1637 |
2.44e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.06 E-value: 2.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1418 KDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKeyeylVMKSLNET 1497
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREE-----LGERARAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1498 Q--GNKCEDLNQQLEAQksSLEKVeMQNVNLTQRLNE-TLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQE 1574
Cdd:COG3883 96 YrsGGSVSYLDVLLGSE--SFSDF-LDRLSALSKIADaDADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958755384 1575 LQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKE 1637
Cdd:COG3883 173 LEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
506-1143 |
2.46e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 49.72 E-value: 2.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 506 LNTQYNNLVLDYEQLRRENEDLKL----KLKEKNELEEFEFLE-QREEKDQENELSSKVELLKEKEDQIKELQRYIDAQK 580
Cdd:pfam05483 188 LNNNIEKMILAFEELRVQAENARLemhfKLKEDHEKIQHLEEEyKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESR 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 581 SETTKTDlsysseatedlkqamrtlsdldtvaldakrESAFLRSENleLKERINELSDSCKQMENGIQMYQRQLEAKKQv 660
Cdd:pfam05483 268 DKANQLE------------------------------EKTKLQDEN--LKELIEKKDHLTKELEDIKMSLQRSMSTQKA- 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 661 qadLEKELQLAFQEISKLSALVDGKGLLSN----------LELEKRITDLQKELNKEVEEKETLQKEVHLLS-ELKSLPS 729
Cdd:pfam05483 315 ---LEEDLQIATKTICQLTEEKEAQMEELNkakaahsfvvTEFEATTCSLEELLRTEQQRLEKNEDQLKIITmELQKKSS 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 730 EVETLRRELHEKS---EELCVITTEREKLFSEmahkDSRIQGLLEEIGNTKDDLAAsqlSQRSSDEECQALKSLHVELKH 806
Cdd:pfam05483 392 ELEEMTKFKNNKEvelEELKKILAEDEKLLDE----KKQFEKIAEELKGKEQELIF---LLQAREKEIHDLEIQLTAIKT 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 807 RQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRAL----T 882
Cdd:pfam05483 465 SEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLeekeM 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 883 QEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKMKateemsdhlpIKGREGSSDEVE 962
Cdd:pfam05483 545 NLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQ----------IENKNKNIEELH 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 963 QKLDGIDEEnllaesahtvvGSGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRIL 1042
Cdd:pfam05483 615 QENKALKKK-----------GSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAI 683
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1043 RDE-LKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSemqakvTDLENLQNEFRN 1121
Cdd:pfam05483 684 ADEaVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALE------IELSNIKAELLS 757
|
650 660
....*....|....*....|..
gi 1958755384 1122 QALALERVETERLELAQKLHEN 1143
Cdd:pfam05483 758 LKKQLEIEKEEKEKLKMEAKEN 779
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1274-2011 |
2.54e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.05 E-value: 2.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1274 TEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDS 1353
Cdd:TIGR00606 197 TQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKS 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1354 LIVSLSQKEAELSSVRVQLEVTTGELERKVQELCEKQEQLNIKETSEVQGKMSELDHIRALLLTKDSALQSVESdrlRLN 1433
Cdd:TIGR00606 277 RKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQG---RLQ 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1434 KQLEESQEEIKILIKEREELRRAQEALHVEREQQQE-SIKEISTRLQELQDKEYEYL--VMKSLNETQGNKCEDLNQQLE 1510
Cdd:TIGR00606 354 LQADRHQEHIRARDSLIQSLATRLELDGFERGPFSErQIKNFHTLVIERQEDEAKTAaqLCADLQSKERLKQEQADEIRD 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1511 AQKSSLEKVEMQNVNLTQRLNE---TLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKghQLSQVKA 1587
Cdd:TIGR00606 434 EKKGLGRTIELKKEILEKKQEElkfVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVK--SLQNEKA 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1588 DLRETMDQMEQLKEQLEAQNSTL---ESIEIEKLKLTQQLNEN----LKEMTLVAKENDDLKIMDE---ALREERDQLRE 1657
Cdd:TIGR00606 512 DLDRKLRKLDQEMEQLNHHTTTRtqmEMLTKDKMDKDEQIRKIksrhSDELTSLLGYFPNKKQLEDwlhSKSKEINQTRD 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1658 SLR--QTEASDLEKQEKLRIAHLDLKEHQET--------------IERLMGSVAKRTEEVSDMNMELERANTRLQEKVQE 1721
Cdd:TIGR00606 592 RLAklNKELASLEQNKNHINNELESKEEQLSsyedklfdvcgsqdEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQ 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1722 LKASELQLLKSKVEAGETKKQLKEqglALSKIEMENLNLAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQLKDSLRE 1801
Cdd:TIGR00606 672 LTDENQSCCPVCQRVFQTEAELQE---FISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPE 748
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1802 AKFKaHQNYEETVQYGKGLLCGGEQHCTG-----RLREKCLRIEKLLKRYSEMANDYEclNRFSLDLEKETKTQKELSVT 1876
Cdd:TIGR00606 749 LRNK-LQKVNRDIQRLKNDIEEQETLLGTimpeeESAKVCLTDVTIMERFQMELKDVE--RKIAQQAAKLQGSDLDRTVQ 825
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1877 -IKTKLSLPYTQTKEIEKLLTANQRCSMEFHRILKKLKYVLSYITRIKEEQHEFINKFEMAFIQEVEKQNELQIKIQSLS 1955
Cdd:TIGR00606 826 qVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIK 905
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1956 QTSNIPSRDSQSK----LSQEMDLHIEEILKDFSENDFLTIKTEVKQVLSNRKEITEFLE 2011
Cdd:TIGR00606 906 DAKEQDSPLETFLekdqQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQ 965
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1327-1970 |
2.59e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 49.69 E-value: 2.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1327 LANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELcekqeQLNIKETSEVQGKMS 1406
Cdd:COG5022 818 CIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRV-----ELAERQLQELKIDVK 892
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1407 ELDHIRALLLTKDSAL----QSVESDRLRLNKQLEESQEEIKILIKEREelrraqealhvereqqqesIKEISTRLQELQ 1482
Cdd:COG5022 893 SISSLKLVNLELESEIielkKSLSSDLIENLEFKTELIARLKKLLNNID-------------------LEEGPSIEYVKL 953
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1483 DKEYEYL-VMKSLNETQGNKcEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQL 1561
Cdd:COG5022 954 PELNKLHeVESKLKETSEEY-EDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSAS 1032
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1562 KKSLEETITKNQELQEKG------HQLSQVKADL------RETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLK 1629
Cdd:COG5022 1033 KIISSESTELSILKPLQKlkglllLENNQLQARYkalklrRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPA 1112
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1630 EMT----LVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLdlkEHQETIERLMGSVAKRTEEVSdmn 1705
Cdd:COG5022 1113 NVLqfivAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANL---EALPSPPPFAALSEKRLYQSA--- 1186
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1706 melerantrLQEKVQELKASELQLLKSKVEAgetkKQLKEQGLALSKIEMenLNLAQQIHQNLEEMKSISKERDDLKRME 1785
Cdd:COG5022 1187 ---------LYDEKSKLSSSEVNDLKNELIA----LFSKIFSGWPRGDKL--KKLISEGWVPTEYSTSLKGFNNLNKKFD 1251
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1786 EILRMEKDQL---KDSLREAKFKAHQNYEETVQYGKGLLCGGEQHCTGRLREKCLRIE-KLLKRYSEMANDYEC------ 1855
Cdd:COG5022 1252 TPASMSNEKLlslLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRwKSATEVNYNSEELDDwcrefe 1331
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1856 LNRFSLDLEKETKTQKELSVT------IKTKLSLPYTQTK-EIEKLLTANQRCSMEfHRILKKLKYVLSYITRIKEEQHE 1928
Cdd:COG5022 1332 ISDVDEELEELIQAVKVLQLLkddlnkLDELLDACYSLNPaEIQNLKSRYDPADKE-NNLPKEILKKIEALLIKQELQLS 1410
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|.
gi 1958755384 1929 FINKFEM--AFIQ-------EVEKQNELQIKIQSLSQTSNIPSRDSQSKLS 1970
Cdd:COG5022 1411 LEGKDETevHLSEifseeksLISLDRNSIYKEEVLSSLSALLTKEKIALLD 1461
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1126-1484 |
2.77e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 49.12 E-value: 2.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1126 LERVETERLELAQKLHENYEKMEsitKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQlniaHANLKEYQEIIKE 1205
Cdd:pfam07888 36 LEECLQERAELLQAQEAANRQRE---KEKERYKRDREQWERQRRELESRVAELKEELRQSREK----HEELEEKYKELSA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1206 LRGSISEKEAQASStqdtgktnpasQGETPVPREQELLPDAEE-ARASAEKGSELEPVEEHSRTAHSLTTEgIEMEILAL 1284
Cdd:pfam07888 109 SSEELSEEKDALLA-----------QRAAHEARIRELEEDIKTlTQRVLERETELERMKERAKKAGAQRKE-EEAERKQL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1285 TKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDD----------ARRTLANHLETEEELSLARCCLKEQENKIDSL 1354
Cdd:pfam07888 177 QAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTittltqklttAHRKEAENEALLEELRSLQERLNASERKVEGL 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1355 IVSLS-------QKEAELSSVRVQLEVTTGELERKVQELCEKQEQLNIKETSEVQGKMSELDHIRAL---LLTKDSALQS 1424
Cdd:pfam07888 257 GEELSsmaaqrdRTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLsaeLQRLEERLQE 336
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958755384 1425 VESDRLRLNKQL----EESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDK 1484
Cdd:pfam07888 337 ERMEREKLEVELgrekDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQR 400
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
557-1488 |
3.03e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.66 E-value: 3.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 557 SKVELLKEKEDQIKELQRYIDA------------QKSETTKTDLSYSSEATEDLKQAMRTLSDLDTVALDAKRESAFLRS 624
Cdd:TIGR00606 166 SEGKALKQKFDEIFSATRYIKAletlrqvrqtqgQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYEN 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 625 ENLELKER---INELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSALVDGKGLLSNLELEKRITDLQ 701
Cdd:TIGR00606 246 ELDPLKNRlkeIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQ 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 702 KELNKEVEEKETL-QKEVHLLSELKSLPSEVETLRRELHEKSEELCVITTERE-KLFSEMAHKDSRIQGLLEEIGNTKDD 779
Cdd:TIGR00606 326 RELEKLNKERRLLnQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLElDGFERGPFSERQIKNFHTLVIERQED 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 780 LA--ASQLSQRSSDEECQALKSLhVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSL 857
Cdd:TIGR00606 406 EAktAAQLCADLQSKERLKQEQA-DEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 858 QSAEK-EKNLLTEKLqqtLEEVRALTQEKNDLKQLQESLQTERDQLrsdiqdtvNMNIDTQEQLLNALESLKQHQETINM 936
Cdd:TIGR00606 485 RELSKaEKNSLTETL---KKEVKSLQNEKADLDRKLRKLDQEMEQL--------NHHTTTRTQMEMLTKDKMDKDEQIRK 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 937 LKMKATEEMSDHLPI--------KGREGSSDEVEQKLDGIDEENLLAESAHTVvgsgEDHGETEEQRKIDsllQENSRLQ 1008
Cdd:TIGR00606 554 IKSRHSDELTSLLGYfpnkkqleDWLHSKSKEINQTRDRLAKLNKELASLEQN----KNHINNELESKEE---QLSSYED 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1009 QTLESIIAEKEQLKMD-LKENIEMSVENQEELR---------ILRDELKRQQEIAAQEKDHVTEKseelsRAHERLAEIE 1078
Cdd:TIGR00606 627 KLFDVCGSQDEESDLErLKEEIEKSSKQRAMLAgatavysqfITQLTDENQSCCPVCQRVFQTEA-----ELQEFISDLQ 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1079 EKLKEKNQKLQETQQQLVSIQEAMSEMQAKV----TDLENLQNEFRNQALALERVETERLELAQKLHENYEKMESITKER 1154
Cdd:TIGR00606 702 SKLRLAPDKLKSTESELKKKEKRRDEMLGLApgrqSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEE 781
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1155 NDLKELQ-----------ESFEIEKKQLKEYAREMESAGLQTKEQLNiahanlKEYQEIIKELRGSISEKEAQASSTQDT 1223
Cdd:TIGR00606 782 ESAKVCLtdvtimerfqmELKDVERKIAQQAAKLQGSDLDRTVQQVN------QEKQEKQHELDTVVSKIELNRKLIQDQ 855
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1224 GKTNPASQGETPVPREQELLPDAEEARASAEKGSELEPVEEHSRTAHSLTTEGIEMEILALTKKLEESQKEISCLTKERS 1303
Cdd:TIGR00606 856 QEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETS 935
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1304 DlRRTQEALQVECAQLKDDA--RRTLANHLETEEELSlarccLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELER 1381
Cdd:TIGR00606 936 N-KKAQDKVNDIKEKVKNIHgyMKDIENKIQDGKDDY-----LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDT 1009
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1382 KVQELCEKQEQLNiketsevqgKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEalh 1461
Cdd:TIGR00606 1010 QKIQERWLQDNLT---------LRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQ--- 1077
|
970 980
....*....|....*....|....*..
gi 1958755384 1462 vEREQQQESIKEISTRLQELQDKEYEY 1488
Cdd:TIGR00606 1078 -KGYEKEIKHFKKELREPQFRDAEEKY 1103
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
615-1189 |
3.09e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.45 E-value: 3.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 615 AKRESAFLRSENLELKerineLSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSAlvdgkgllsnlELE 694
Cdd:pfam12128 244 TKLQQEFNTLESAELR-----LSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRD-----------ELN 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 695 KRITDLQKELNKEVEEKETL--QKEVHLLSELKSLPSEVETL---RRELHEKSEELCVITTEREKLFSEM-AHKDSRIQG 768
Cdd:pfam12128 308 GELSAADAAVAKDRSELEALedQHGAFLDADIETAAADQEQLpswQSELENLEERLKALTGKHQDVTAKYnRRRSKIKEQ 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 769 LLEEIGNTKDDLAASQLSQRSSDEECQA-LKSLHVELKHRQE----EVLEESERVKQELSQKTQELAQKTAEGQEMLNQm 843
Cdd:pfam12128 388 NNRDIAGIKDKLAKIREARDRQLAVAEDdLQALESELREQLEagklEFNEEEYRLKSRLGELKLRLNQATATPELLLQL- 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 844 EELREKLERRDSSLQSAEKEKnlltEKLQQTLEEVRALTQEKND-LKQLQESLQterdQLRSDIQDTVNMNIDTQEQLLN 922
Cdd:pfam12128 467 ENFDERIERAREEQEAANAEV----ERLQSELRQARKRRDQASEaLRQASRRLE----ERQSALDELELQLFPQAGTLLH 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 923 ALESLKQHQETiNMLKMKATEEM--SDHLPIKGREGSSDEVEQKLDGIDEENLLAESAHtvvgsgeDHGETEEQR--KID 998
Cdd:pfam12128 539 FLRKEAPDWEQ-SIGKVISPELLhrTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEWA-------ASEEELRERldKAE 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 999 SLLQENSRLQQTLESIIA------EKEQLKMD-----LKEN----IEMSVENQEELRILRDELKRQQEIAAQEKDHVTEK 1063
Cdd:pfam12128 611 EALQSAREKQAAAEEQLVqangelEKASREETfartaLKNArldlRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQ 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1064 SEELSRAHER-LAEIEEKLKE----KNQKLQE----TQQQLVSIQEAM-SEMQAKVTDLENLQNEFRNQALALERVETER 1133
Cdd:pfam12128 691 LKQLDKKHQAwLEEQKEQKREarteKQAYWQVvegaLDAQLALLKAAIaARRSGAKAELKALETWYKRDLASLGVDPDVI 770
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1134 LELAQKLHENYEKMESITKERNDLKE----LQESFEIEKKQLKEYAREMESAGLQTKEQL 1189
Cdd:pfam12128 771 AKLKREIRTLERKIERIAVRRQEVLRyfdwYQETWLQRRPRLATQLSNIERAISELQQQL 830
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
596-901 |
3.26e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 49.12 E-value: 3.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 596 EDLKQAMRTLSDLDTVALDAKRESAFLRSENLELKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEI 675
Cdd:pfam07888 38 ECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEK 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 676 SKLSAlVDGKGLLSNLELEKRITDL-QKELNKEVEEKETLQKEVHLLSELKSLPSEVETLRRELHEKSEELCVITTEREK 754
Cdd:pfam07888 118 DALLA-QRAAHEARIRELEEDIKTLtQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQE 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 755 LFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQALKSLhvelkhrqEEVLEESERVKQELSQKTQELAQKTA 834
Cdd:pfam07888 197 LRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSL--------QERLNASERKVEGLGEELSSMAAQRD 268
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958755384 835 EGQEMLNQ--MEELREKLERRDSSLQSAEKEKNLLTEK--LQQTLEEVRALTQEKND-LKQLQESLQTERDQ 901
Cdd:pfam07888 269 RTQAELHQarLQAAQLTLQLADASLALREGRARWAQERetLQQSAEADKDRIEKLSAeLQRLEERLQEERME 340
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1193-1801 |
3.61e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 49.05 E-value: 3.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1193 HANLKEYQEIIKELRGSISEKEAQASSTQDTGKTNpasqgETPVPREQELLPDAEEARASAEKgselepveEHSRTAHSl 1272
Cdd:pfam10174 2 QAQLRDLQRENELLRRELDIKESKLGSSMNSIKTF-----WSPELKKERALRKEEAARISVLK--------EQYRVTQE- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1273 TTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKID 1352
Cdd:pfam10174 68 ENQHLQLTIQALQDELRAQRDLNQLLQQDFTTSPVDGEDKFSTPELTEENFRRLQSEHERQAKELFLLRKTLEEMELRIE 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1353 SLIVSLsqkEAELSSVRVQLEVTTGelerkvQELCEKQEQLNIKETSEVQGKMSELDHIRALLLTKDSALQSVESDRLRL 1432
Cdd:pfam10174 148 TQKQTL---GARDESIKKLLEMLQS------KGLPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHRR 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1433 NKQLEESQE-----------EIKILIKER------EELRRAQEALHVEREQQQESIKE--------------ISTRLQEL 1481
Cdd:pfam10174 219 NQLQPDPAKtkalqtviemkDTKISSLERnirdleDEVQMLKTNGLLHTEDREEEIKQmevykshskfmknkIDQLKQEL 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1482 QDKEYEYLVMKSLNETQGNKCEDLNQQLEAQKSSLEKVEmQNVNLTQ----RLNETLEEMKSV-AKERDELRSVEER--- 1553
Cdd:pfam10174 299 SKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKE-QRAAILQtevdALRLRLEEKESFlNKKTKQLQDLTEEkst 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1554 LTADRDQLKKSLEETITKNQELQEKGHQLSQVkadLRETMDQMEQLKE-----QLEAQNS-----TLESIEIEKLKLTQQ 1623
Cdd:pfam10174 378 LAGEIRDLKDMLDVKERKINVLQKKIENLQEQ---LRDKDKQLAGLKErvkslQTDSSNTdtaltTLEEALSEKERIIER 454
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1624 LNENL-KEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVS 1702
Cdd:pfam10174 455 LKEQReREDRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECS 534
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1703 DMNMELERA-NTRLQEKVQELKASELQLLKSKV-----EAGETKKQLKEQGLALSKIEMENLNLAQQIHQ----NLEEMK 1772
Cdd:pfam10174 535 KLENQLKKAhNAEEAVRTNPEINDRIRLLEQEVarykeESGKAQAEVERLLGILREVENEKNDKDKKIAEleslTLRQMK 614
|
650 660 670
....*....|....*....|....*....|
gi 1958755384 1773 SISKERDDLKRMEEILRMEK-DQLKDSLRE 1801
Cdd:pfam10174 615 EQNKKVANIKHGQQEMKKKGaQLLEEARRR 644
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1286-1746 |
4.48e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 4.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1286 KKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRtlANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAEL 1365
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEK--LEKLLQLLPLYQELEALEAELAELPERLEELEERLEEL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1366 SSVRVQLEVTTGELERKVQELCEKQEQLNIKETSEVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEiKI 1445
Cdd:COG4717 159 RELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENE-LE 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1446 LIKEREELRRAQEALHVEReqqqeSIKEISTRLQELQDKEYEYLVMKSLnetqgnkcedlnqQLEAQKSSLEKVEMQNVN 1525
Cdd:COG4717 238 AAALEERLKEARLLLLIAA-----ALLALLGLGGSLLSLILTIAGVLFL-------------VLGLLALLFLLLAREKAS 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1526 LTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQLSQVKADLReTMDQMEQLKEQLEA 1605
Cdd:COG4717 300 LGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQ-LEELEQEIAALLAE 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1606 QNSTLESIEIEKLKLTQQLNENLKEMTLVAK--ENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEH 1683
Cdd:COG4717 379 AGVEDEEELRAALEQAEEYQELKEELEELEEqlEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAEL 458
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958755384 1684 QETIERLMGSvakrtEEVSDMNMELERANTRLQEKVQELKAseLQLLKSKVEagETKKQLKEQ 1746
Cdd:COG4717 459 EAELEQLEED-----GELAELLQELEELKAELRELAEEWAA--LKLALELLE--EAREEYREE 512
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1432-1801 |
4.79e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 48.35 E-value: 4.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1432 LNKQLEESQEEIKILIKEREELRRAQEALHVE----REQQQESIKEISTRLQELQDKEYEYLVMKSLNETQGNKCEDLNQ 1507
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERykrdREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1508 QLEAQKSSLEKVEMQNVnltQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKghqLSQVKA 1587
Cdd:pfam07888 112 ELSEEKDALLAQRAAHE---ARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAK---LQQTEE 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1588 DLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTlvakENDDLKimdEALREERDQLRESLRQTEA--S 1665
Cdd:pfam07888 186 ELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEA----ENEALL---EELRSLQERLNASERKVEGlgE 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1666 DLEKQEKLRiAHLDLKEHQETIErlmgsVAKRTEEVSDMNMELERANTRLQEKVQELKASeLQLLKSKVEAGETKKQLKE 1745
Cdd:pfam07888 259 ELSSMAAQR-DRTQAELHQARLQ-----AAQLTLQLADASLALREGRARWAQERETLQQS-AEADKDRIEKLSAELQRLE 331
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755384 1746 QGLALSKIEMENL--NLAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQLKDSLRE 1801
Cdd:pfam07888 332 ERLQEERMEREKLevELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQE 389
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
692-864 |
4.83e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 48.29 E-value: 4.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 692 ELEKRITDLQKELNKEVEEKETLQKEVH-LLSELKSLPSEVETLRRELHEKSEELcvitTEREKLFSEMAH---KDSRIQ 767
Cdd:COG3883 27 ELQAELEAAQAELDALQAELEELNEEYNeLQAELEALQAEIDKLQAEIAEAEAEI----EERREELGERARalyRSGGSV 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 768 GLLEEIGNTKD--DL-----AASQLSQRSSD--EECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQE 838
Cdd:COG3883 103 SYLDVLLGSESfsDFldrlsALSKIADADADllEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEA 182
|
170 180
....*....|....*....|....*.
gi 1958755384 839 MLNQMEELREKLERRDSSLQSAEKEK 864
Cdd:COG3883 183 LLAQLSAEEAAAEAQLAELEAELAAA 208
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1434-1714 |
5.29e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.58 E-value: 5.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1434 KQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDK-----EYEYLVMKSLNETQGNKCEDLNQQ 1508
Cdd:pfam17380 282 KAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQaaiyaEQERMAMERERELERIRQEERKRE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1509 LEAQKSSLEKVEMQNVNLTQRLNetLEEMKSVAKERDELRSVEERLTADRDQLKKSLE-----ETITKNQE--------- 1574
Cdd:pfam17380 362 LERIRQEEIAMEISRMRELERLQ--MERQQKNERVRQELEAARKVKILEEERQRKIQQqkvemEQIRAEQEearqrevrr 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1575 -LQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNStlESIEIEKLKLTQQLNENLKEMTLVAKENDDLKIMDEALReERD 1653
Cdd:pfam17380 440 lEEERAREMERVRLEEQERQQQVERLRQQEEERKR--KKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEER-KRK 516
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958755384 1654 QLRESLRQTEASDLEKQEKlRIAHLDLKEHQETIER--LMGSVAKRTEEVSDMN-MELERANTR 1714
Cdd:pfam17380 517 LLEKEMEERQKAIYEEERR-REAEEERRKQQEMEERrrIQEQMRKATEERSRLEaMEREREMMR 579
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
804-1171 |
5.55e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.80 E-value: 5.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 804 LKHRQE--EVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNL--------------- 866
Cdd:COG3096 274 MRHANErrELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLNLvqtalrqqekieryq 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 867 -----LTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDtVNMNIDTQE-------QLLNALESLKQHQETI 934
Cdd:COG3096 354 edleeLTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLAD-YQQALDVQQtraiqyqQAVQALEKARALCGLP 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 935 NMLKMKATEEMSDHlpiKGREGSSDEV----EQKLDGIDEENLLAESAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQT 1010
Cdd:COG3096 433 DLTPENAEDYLAAF---RAKEQQATEEvlelEQKLSVADAARRQFEKAYELVCKIAGEVERSQAWQTARELLRRYRSQQA 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1011 LesiIAEKEQLKMDLKEnIEMSVENQEELRILRDELKRQQeiaAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQE 1090
Cdd:COG3096 510 L---AQRLQQLRAQLAE-LEQRLRQQQNAERLLEEFCQRI---GQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSE 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1091 TQQQLVSIQEAMSEMQAKV-------TDLENLQNEFRNQALALERVETERLELAQKLHEnyekmesITKERNDLKELQES 1163
Cdd:COG3096 583 LRQQLEQLRARIKELAARApawlaaqDALERLREQSGEALADSQEVTAAMQQLLERERE-------ATVERDELAARKQA 655
|
....*...
gi 1958755384 1164 FEIEKKQL 1171
Cdd:COG3096 656 LESQIERL 663
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
651-911 |
5.57e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 5.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 651 QRQLEAKKQVQADLEKELQLAFQEISKLSALVDgkgllsnlELEKRITDLQKELNKEVEEKETLQKEVHL------LSEL 724
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELD--------ALQERREALQRLAEYSWDEIDVASAEREIaeleaeLERL 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 725 KSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAAsqlsqrsSDEECQALKSLHVEL 804
Cdd:COG4913 681 DASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEA-------AEDLARLELRALLEE 753
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 805 KHRQEEVLEESERVKQELSQKTQELAQKTA-EGQEMLNQMEELREK----LERRDSSLQSAEKEKNLLTEKLQQTLEEVR 879
Cdd:COG4913 754 RFAAALGDAVERELRENLEERIDALRARLNrAEEELERAMRAFNREwpaeTADLDADLESLPEYLALLDRLEEDGLPEYE 833
|
250 260 270
....*....|....*....|....*....|....*...
gi 1958755384 880 A------LTQEKNDLKQLQESLQTERDQLRSDIqDTVN 911
Cdd:COG4913 834 ErfkellNENSIEFVADLLSKLRRAIREIKERI-DPLN 870
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
693-911 |
5.78e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 5.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 693 LEKRITDLQKELNKEVEEKETLQKEVHLLSelksLPSEVETLRRELHEkseelcvITTEREKLFSEMAHKDSRIQGLLEE 772
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEFRQKNGLVD----LSEEAKLLLQQLSE-------LESQLAEARAELAEAEARLAALRAQ 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 773 IGNTKDdlaasQLSQRSSDEECQALKSLHVELKHRQEEVL----EESERVKQELSQKTQELAQKTAEGQEMLNQMEELRE 848
Cdd:COG3206 249 LGSGPD-----ALPELLQSPVIQQLRAQLAELEAELAELSarytPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELE 323
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958755384 849 KLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVN 911
Cdd:COG3206 324 ALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALTVG 386
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1275-1469 |
5.82e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 5.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1275 EGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSL 1354
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1355 IVS-------------LSQKEAELSSVRVQ-LEVTTGELERKVQELCEKQEQLNIKETsEVQGKMSELDHIRALLLTKDS 1420
Cdd:COG4942 110 LRAlyrlgrqpplallLSPEDFLDAVRRLQyLKYLAPARREQAEELRADLAELAALRA-ELEAERAELEALLAELEEERA 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958755384 1421 ALQSVESDRL----RLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQE 1469
Cdd:COG4942 189 ALEALKAERQkllaRLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
787-1368 |
6.37e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 48.68 E-value: 6.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 787 QRSSDEECQALKSLHVELKHRQEEVleesERVKQELSQKTQELAQKTAEGQEML----NQMEELREKLERRDSSLQSAEK 862
Cdd:pfam12128 300 KEKRDELNGELSAADAAVAKDRSEL----EALEDQHGAFLDADIETAAADQEQLpswqSELENLEERLKALTGKHQDVTA 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 863 EKNLLTEKLQQTL----------------EEVRALTQEKNDLKQLQESLQTERDQLRSDIQDT--------------VNM 912
Cdd:pfam12128 376 KYNRRRSKIKEQNnrdiagikdklakireARDRQLAVAEDDLQALESELREQLEAGKLEFNEEeyrlksrlgelklrLNQ 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 913 NIDTQEQLLNalesLKQHQETINmlKMKATEEMSDhlpiKGREGSSDEV-------EQKLDGIDEENLLAESAHTVVGSG 985
Cdd:pfam12128 456 ATATPELLLQ----LENFDERIE--RAREEQEAAN----AEVERLQSELrqarkrrDQASEALRQASRRLEERQSALDEL 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 986 EDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDL-KENIEMSVENQEELRILRDELKRQQ--EIAAQE---KDH 1059
Cdd:pfam12128 526 ELQLFPQAGTLLHFLRKEAPDWEQSIGKVISPELLHRTDLdPEVWDGSVGGELNLYGVKLDLKRIDvpEWAASEeelRER 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1060 VTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLvsiQEAMSEMQAKVTDLENLQNEFRNQALALERVETERLELAQk 1139
Cdd:pfam12128 606 LDKAEEALQSAREKQAAAEEQLVQANGELEKASREE---TFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSAN- 681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1140 lhenyEKMESITKERNDL-KELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEyqeiikELRGSISEKEAQAS 1218
Cdd:pfam12128 682 -----ERLNSLEAQLKQLdKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKA------AIAARRSGAKAELK 750
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1219 STQDTGKTNPASQG---ETPVPREQE---LLPDAEEARASAEKGSELEPVEEHS----RTAHSLTTEGIEMEIL----AL 1284
Cdd:pfam12128 751 ALETWYKRDLASLGvdpDVIAKLKREirtLERKIERIAVRRQEVLRYFDWYQETwlqrRPRLATQLSNIERAISelqqQL 830
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1285 TKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARR--TLANHLETEE-ELSLARC--CLKEQENKIDSLIVSLS 1359
Cdd:pfam12128 831 ARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKlaTLKEDANSEQaQGSIGERlaQLEDLKLKRDYLSESVK 910
|
....*....
gi 1958755384 1360 QKEAELSSV 1368
Cdd:pfam12128 911 KYVEHFKNV 919
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
991-1177 |
9.74e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 47.70 E-value: 9.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 991 TEEQRKIDSLLQEnsrlqqtLESIIAEKEQLKMDLKeNIEMSVENQEE-LRILRDEL-KRQQEIAAQEKDHVTEK----- 1063
Cdd:PHA02562 216 ARKQNKYDELVEE-------AKTIKAEIEELTDELL-NLVMDIEDPSAaLNKLNTAAaKIKSKIEQFQKVIKMYEkggvc 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1064 ---SEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLENLQNEFRN--QALALERVETERLELAq 1138
Cdd:PHA02562 288 ptcTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTnkQSLITLVDKAKKVKAA- 366
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1958755384 1139 klhenyekMESITKERND----LKELQESFEIEKKQLKEYARE 1177
Cdd:PHA02562 367 --------IEELQAEFVDnaeeLAKLQDELDKIVKTKSELVKE 401
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1113-1591 |
9.97e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 9.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1113 ENLQNEFRNQALALERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREmesagLQTKEQLNIA 1192
Cdd:COG4717 53 KEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREE-----LEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1193 HANLKEYQEIIKELRGSISEKEAQasstqdtgktnpasqgetpvprEQELLPDAEEARASAEKGSELEPVEEHSRTAHSL 1272
Cdd:COG4717 128 LPLYQELEALEAELAELPERLEEL----------------------EERLEELRELEEELEELEAELAELQEELEELLEQ 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1273 TTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRT-LANHLETEEELSLARCCLKEQENKI 1351
Cdd:COG4717 186 LSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAaLEERLKEARLLLLIAAALLALLGLG 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1352 DSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCEKQEQLNIKETSEvQGKMSELDHIRALLLTKDSALQSVESDRLR 1431
Cdd:COG4717 266 GSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALE-ELEEEELEELLAALGLPPDLSPEELLELLD 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1432 LNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKeyeylvmkslnETQGNKCEDLNQQLEA 1511
Cdd:COG4717 345 RIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEY-----------QELKEELEELEEQLEE 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1512 QKSSLEKVEMQN--VNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSleetitknQELQEKGHQLSQVKADL 1589
Cdd:COG4717 414 LLGELEELLEALdeEELEEELEELEEELEELEEELEELREELAELEAELEQLEED--------GELAELLQELEELKAEL 485
|
..
gi 1958755384 1590 RE 1591
Cdd:COG4717 486 RE 487
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1000-1139 |
1.06e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.47 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1000 LLQENSRLQQTLESIIAEKEQLKMDL-----KENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERL 1074
Cdd:PRK12704 33 IKEAEEEAKRILEEAKKEAEAIKKEAlleakEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEEL 112
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958755384 1075 AEIEEKLKEKNQKLQETQQQLVSIQE----------AMSEMQAKVTDLENLQNEFRNQALAL-ERVETERLELAQK 1139
Cdd:PRK12704 113 EKKEKELEQKQQELEKKEEELEELIEeqlqelerisGLTAEEAKEILLEKVEEEARHEAAVLiKEIEEEAKEEADK 188
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
340-1130 |
1.08e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.73 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 340 NDEALLKRYRREIVDLKKQLEEVNTKTRAQEIEKdqlAQLLDEKDLLQKVQDEKIQNLKRMLVTSSSIALQQEL------ 413
Cdd:TIGR00606 309 NHQRTVREKERELVDCQRELEKLNKERRLLNQEK---TELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELdgferg 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 414 ---EIKKKRRVTWCFGKMKD-SNYVKEFKIPTNITTRTRKTSVTPLRE-----NSLMKLGESALSWESEVFDNTLEPLAE 484
Cdd:TIGR00606 386 pfsERQIKNFHTLVIERQEDeAKTAAQLCADLQSKERLKQEQADEIRDekkglGRTIELKKEILEKKQEELKFVIKELQQ 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 485 AEWSSATALLSEENL---ESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKEKneleefEFLEQREEKDQENELSSKVEL 561
Cdd:TIGR00606 466 LEGSSDRILELDQELrkaERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLR------KLDQEMEQLNHHTTTRTQMEM 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 562 LKEKEDQIKELQRYIDAQKSETTKTDLSYSS----------EATEDLKQAMRTLSDLDTVALDAKRESAFLRSENLELKE 631
Cdd:TIGR00606 540 LTKDKMDKDEQIRKIKSRHSDELTSLLGYFPnkkqledwlhSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEE 619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 632 RINELSD------SCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSALVDG------KGLLSNLELEKRITD 699
Cdd:TIGR00606 620 QLSSYEDklfdvcGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSccpvcqRVFQTEAELQEFISD 699
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 700 LQ----------KELNKEVEEKETLQKEVHLLSELKSlpSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGL 769
Cdd:TIGR00606 700 LQsklrlapdklKSTESELKKKEKRRDEMLGLAPGRQ--SIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTI 777
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 770 LEEIGNTKDDLAASQLSQRSSDEECQALKSLHVELKHRQEEVLEES-ERVKQELSQKTQELAQKTAEGQEMLNQMEELRE 848
Cdd:TIGR00606 778 MPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTvQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQE 857
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 849 KLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLK 928
Cdd:TIGR00606 858 QIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNK 937
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 929 QHQETINMLKMKateemsdhlpIKGREGSSDEVEQKL-DGIDEENLLAESahtvvgsgedhgeteEQRKIDSLLQENSRL 1007
Cdd:TIGR00606 938 KAQDKVNDIKEK----------VKNIHGYMKDIENKIqDGKDDYLKQKET---------------ELNTVNAQLEECEKH 992
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1008 QQTLESIIAEKEQlKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTE-KSEELSRAHERLAEiEEKLKEKNQ 1086
Cdd:TIGR00606 993 QEKINEDMRLMRQ-DIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQmQVLQMKQEHQKLEE-NIDLIKRNH 1070
|
810 820 830 840
....*....|....*....|....*....|....*....|....
gi 1958755384 1087 KLQETQQQLVSIQEAMSEMQAKVTDLENLQNEFRNQALALERVE 1130
Cdd:TIGR00606 1071 VLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMIVMRTTE 1114
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
1503-1756 |
1.39e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 46.44 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1503 EDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRsveERLTADRDQLKKSLEETITKNQELQEKGHQL 1582
Cdd:COG1340 4 DELSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELN---AQVKELREEAQELREKRDELNEKVKELKEER 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1583 SQVKADLRETMDQMEQLKEQLEAQNSTLESI-----EIEKLKLTQQlNENL---KEMTLVAKENDDLKIMDEAlrEERDQ 1654
Cdd:COG1340 81 DELNEKLNELREELDELRKELAELNKAGGSIdklrkEIERLEWRQQ-TEVLspeEEKELVEKIKELEKELEKA--KKALE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1655 LRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKV 1734
Cdd:COG1340 158 KNEKLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEAQEKADELHEEIIELQK 237
|
250 260
....*....|....*....|..
gi 1958755384 1735 EAGETKKQLKEQGLALSKIEME 1756
Cdd:COG1340 238 ELRELRKELKKLRKKQRALKRE 259
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1545-1749 |
1.49e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.75 E-value: 1.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1545 DELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESiEIEKLK----- 1619
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEE-RREELGerara 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1620 -LTQQLNENLKEMTLVAKENDDL--------KIM--DEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIE 1688
Cdd:COG3883 95 lYRSGGSVSYLDVLLGSESFSDFldrlsalsKIAdaDADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958755384 1689 RLmgsVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLA 1749
Cdd:COG3883 175 AQ---QAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAA 232
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1348-1673 |
1.50e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 46.43 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1348 ENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCEKQEQLNIKEtSEVQGKMSELDHIRALLLTKDSALQSVES 1427
Cdd:COG4372 30 SEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLE-EELEELNEQLQAAQAELAQAQEELESLQE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1428 DRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDK--EYEYLVMKSLNETQGNKCEDL 1505
Cdd:COG4372 109 EAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEElaALEQELQALSEAEAEQALDEL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1506 NQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQLSQV 1585
Cdd:COG4372 189 LKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAIL 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1586 KADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEAS 1665
Cdd:COG4372 269 VEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLV 348
|
....*...
gi 1958755384 1666 DLEKQEKL 1673
Cdd:COG4372 349 GLLDNDVL 356
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1426-1771 |
1.58e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 46.81 E-value: 1.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1426 ESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEYLVMKSLNETQGNKCEDL 1505
Cdd:pfam07888 79 ESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKER 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1506 NQQLEAQKsslEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSveerltadrdqlkkSLEETITKNQELQEKGHQLSQV 1585
Cdd:pfam07888 159 AKKAGAQR---KEEEAERKQLQAKLQQTEEELRSLSKEFQELRN--------------SLAQRDTQVLQLQDTITTLTQK 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1586 KADLRETMDQMEQLKEQLEAQNstlesieiEKLKLTQQLNENLKEmtlvakendDLkimdEALREERDQLRESLRQTEAS 1665
Cdd:pfam07888 222 LTTAHRKEAENEALLEELRSLQ--------ERLNASERKVEGLGE---------EL----SSMAAQRDRTQAELHQARLQ 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1666 DLEKQEKLRIAHLDLKEHQETI----ERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSK----VEAG 1737
Cdd:pfam07888 281 AAQLTLQLADASLALREGRARWaqerETLQQSAEADKDRIEKLSAELQRLEERLQEERMEREKLEVELGREKdcnrVQLS 360
|
330 340 350
....*....|....*....|....*....|....
gi 1958755384 1738 ETKKQLKEQGLALSKIEMENLNLAQQIHQNLEEM 1771
Cdd:pfam07888 361 ESRRELQELKASLRVAQKEKEQLQAEKQELLEYI 394
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1012-1166 |
1.63e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 47.13 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1012 ESIIAE-KEQLKMDlKENIEMSVENQEELRilrdelkRQQEIAAQEkdhVTEKSEELSRAHERLAEIEEKLKEKNQKLQE 1090
Cdd:PRK00409 501 ENIIEEaKKLIGED-KEKLNELIASLEELE-------RELEQKAEE---AEALLKEAEKLKEELEEKKEKLQEEEDKLLE 569
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755384 1091 TQQQLVS--IQEAMSEMQAKVTDLENLQnefrnQALALERVETERLELAQKLHENYEKMESITKERndlKELQESFEI 1166
Cdd:PRK00409 570 EAEKEAQqaIKEAKKEADEIIKELRQLQ-----KGGYASVKAHELIEARKRLNKANEKKEKKKKKQ---KEKQEELKV 639
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1038-1208 |
1.65e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.69 E-value: 1.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1038 ELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQaKVTDLENLQN 1117
Cdd:COG1579 18 ELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVR-NNKEYEALQK 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1118 EFRNQALALERVETERLELAQKLHenyEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQL-----NIA 1192
Cdd:COG1579 97 EIESLKRRISDLEDEILELMERIE---ELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEReelaaKIP 173
|
170
....*....|....*.
gi 1958755384 1193 HANLKEYQEIIKELRG 1208
Cdd:COG1579 174 PELLALYERIRKRKNG 189
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
694-904 |
1.68e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.36 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 694 EKRITDLQKELNKEVEEKETLQKEvhllseLKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEI 773
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAE------LDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 774 GntkDDLAASQLSQRSSDEECQALKSLHVE-----------LKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQ 842
Cdd:COG3883 89 G---ERARALYRSGGSVSYLDVLLGSESFSdfldrlsalskIADADADLLEELKADKAELEAKKAELEAKLAELEALKAE 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958755384 843 MEELREKLErrdSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRS 904
Cdd:COG3883 166 LEAAKAELE---AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAA 224
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1344-1543 |
1.81e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.36 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1344 LKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCEKQEQL--NIKETSEVQGKMSEL-----DHIRAL-- 1414
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIdkLQAEIAEAEAEIEERreelgERARALyr 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1415 ---LLTKDSALQSVES-----DRLRLNKQLEESQ-EEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKE 1485
Cdd:COG3883 98 sggSVSYLDVLLGSESfsdflDRLSALSKIADADaDLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQ 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755384 1486 YEYLVMKSLNETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKE 1543
Cdd:COG3883 178 AEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1243-1628 |
1.91e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.83 E-value: 1.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1243 LPDAEEARASAEKGSELEPVEEHSRTAHSLTTEgiemeILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDD 1322
Cdd:PRK11281 35 LPTEADVQAQLDALNKQKLLEAEDKLVQQDLEQ-----TLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDD 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1323 ARRTLANHLETeeeLSLArcclkEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCEKQEQL----NIKET 1398
Cdd:PRK11281 110 NDEETRETLST---LSLR-----QLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLqqirNLLKG 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1399 SEVQGKMSELDHiRALLLTKDSALQSvesdRLRLNKQLEESQEEIKILIKEREELRraqeALHVEREQQQesikeistrL 1478
Cdd:PRK11281 182 GKVGGKALRPSQ-RVLLQAEQALLNA----QNDLQRKSLEGNTQLQDLLQKQRDYL----TARIQRLEHQ---------L 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1479 QELQDKEYEylvmKSLNETQGNKCEDLNQQL--EAQKSSLEKVEMQ-NVNLTQRLNETLEEMKSVAKERDELRSVEERLT 1555
Cdd:PRK11281 244 QLLQEAINS----KRLTLSEKTVQEAQSQDEaaRIQANPLVAQELEiNLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLT 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1556 -ADR---DQ---LKKSL---------EETITKNQELQEKGHQLsqvkADLR-------ETMDQMEQLK---EQLEAQNS- 1608
Cdd:PRK11281 320 qSERnikEQisvLKGSLllsrilyqqQQALPSADLIEGLADRI----ADLRleqfeinQQRDALFQPDayiDKLEAGHKs 395
|
410 420
....*....|....*....|....*...
gi 1958755384 1609 --------TLESIEIEKLKLTQQLNENL 1628
Cdd:PRK11281 396 evtdevrdALLQLLDERRELLDQLNKQL 423
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1339-1593 |
1.94e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1339 LARCCLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCEKQEQLNIKETsevqgkmsELDHIRALLLTK 1418
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALAR--------RIRALEQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1419 DSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEReqqQESIKEISTRLQelqdkeyeylVMKSLNETQ 1498
Cdd:COG4942 82 EAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLS---PEDFLDAVRRLQ----------YLKYLAPAR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1499 GNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEK 1578
Cdd:COG4942 149 REQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
250
....*....|....*
gi 1958755384 1579 GHQLSQVKADLRETM 1593
Cdd:COG4942 229 IARLEAEAAAAAERT 243
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1437-1795 |
1.96e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.87 E-value: 1.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1437 EESQEEIKILIKEREELRRAQEALHVEREQQQESIKEistrLQELQDKEyeylvmkSLNETQGNKCED-LNQQLEAQKSS 1515
Cdd:COG3096 278 NERRELSERALELRRELFGARRQLAEEQYRLVEMARE----LEELSARE-------SDLEQDYQAASDhLNLVQTALRQQ 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1516 lEKVEMQNVNLTQrLNETLEEMKSVAKERDELRS-VEERLTADRDQLK----------KSLEETITKNQELQEKGHQLSQ 1584
Cdd:COG3096 347 -EKIERYQEDLEE-LTERLEEQEEVVEEAAEQLAeAEARLEAAEEEVDslksqladyqQALDVQQTRAIQYQQAVQALEK 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1585 VKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQL-------NENLKEMTLVAKENDDLKIMD------EALREE 1651
Cdd:COG3096 425 ARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLsvadaarRQFEKAYELVCKIAGEVERSQawqtarELLRRY 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1652 RDQ---------LRESL--------RQTEASDLEKQEKLRI-----AHLDLKEHQETIERLMGSVAKRTEEVSDMNMELE 1709
Cdd:COG3096 505 RSQqalaqrlqqLRAQLaeleqrlrQQQNAERLLEEFCQRIgqqldAAEELEELLAELEAQLEELEEQAAEAVEQRSELR 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1710 RANTRLQEKVQELKASELQLLKskveAGETKKQLKEQ-GLALSKIEMenlnLAQQIHQNLEEMKSISKERDDLKRMEEIL 1788
Cdd:COG3096 585 QQLEQLRARIKELAARAPAWLA----AQDALERLREQsGEALADSQE----VTAAMQQLLEREREATVERDELAARKQAL 656
|
....*..
gi 1958755384 1789 RMEKDQL 1795
Cdd:COG3096 657 ESQIERL 663
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
849-1070 |
2.26e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.98 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 849 KLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIqDTVNMNIDTQEQLL-NALESL 927
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEI-AEAEAEIEERREELgERARAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 928 KQHQETINMLKM----KATEEMSDHLPIKGREGSSDevEQKLDGIDEENLLAESAHTVVgsgedhgeTEEQRKIDSLLQE 1003
Cdd:COG3883 96 YRSGGSVSYLDVllgsESFSDFLDRLSALSKIADAD--ADLLEELKADKAELEAKKAEL--------EAKLAELEALKAE 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958755384 1004 NSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRA 1070
Cdd:COG3883 166 LEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAA 232
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1078-1721 |
2.35e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.71 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1078 EEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLENlqnefrnqalalervetERLELAQKLHENYEKMesitkerNDL 1157
Cdd:pfam01576 4 EEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCE-----------------EKNALQEQLQAETELC-------AEA 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1158 KELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQasstqdtgktnpasqgetpvp 1237
Cdd:pfam01576 60 EEMRARLAARKQELEEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAA--------------------- 118
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1238 rEQELLPDAEEARASAEKGSELEPVEEHSRTAHSLTTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECA 1317
Cdd:pfam01576 119 -RQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLK 197
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1318 QLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGelerkvqelcekQEQLNIKE 1397
Cdd:pfam01576 198 KEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETA------------QKNNALKK 265
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1398 TSEVQGKMSELdhirallltkDSALQSVESDRLRLNKQLEESQEEIKILIKEREEL---RRAQEALHVEREQQQESIK-- 1472
Cdd:pfam01576 266 IRELEAQISEL----------QEDLESERAARNKAEKQRRDLGEELEALKTELEDTldtTAAQQELRSKREQEVTELKka 335
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1473 -EISTRLQELQdkeyeylvMKSLNETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVE 1551
Cdd:pfam01576 336 lEEETRSHEAQ--------LQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKR 407
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1552 ERLTADRDQLKKSLEETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESieieKLKLTQQLnenLKEM 1631
Cdd:pfam01576 408 KKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLES----QLQDTQEL---LQEE 480
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1632 TLvAKENDDLKImdEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSDMNMELERA 1711
Cdd:pfam01576 481 TR-QKLNLSTRL--RQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEAL 557
|
650
....*....|
gi 1958755384 1712 NTRLQEKVQE 1721
Cdd:pfam01576 558 TQQLEEKAAA 567
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1551-1750 |
2.54e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 2.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1551 EERLTADRDQL----KKSLEETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESI--EIEKLKLTQQL 1624
Cdd:COG4717 48 LERLEKEADELfkpqGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELreELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1625 NENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSDM 1704
Cdd:COG4717 128 LPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQR 207
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1958755384 1705 NMELERANTRLQEKVQELKAsELQLLKSKVEAGETKKQLKEQGLAL 1750
Cdd:COG4717 208 LAELEEELEEAQEELEELEE-ELEQLENELEAAALEERLKEARLLL 252
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
354-929 |
2.65e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.50 E-value: 2.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 354 DLKKQLEEVNTKTRAQEIEKDQLAQLLDEKDLLQKVQDEKIQNLKRMLVTSSSIALQQElEIKKKRRVTWCFGKMKDSNY 433
Cdd:TIGR00618 226 KELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQE-RINRARKAAPLAAHIKAVTQ 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 434 VKEFKIPTNITTRTRKTSVTPLRENSLMKLGESALSWESEVFDNTL---EPLAEAEWSSATALLSEENLESELTSLNTQY 510
Cdd:TIGR00618 305 IEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLhsqEIHIRDAHEVATSIREISCQQHTLTQHIHTL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 511 NNLVLDYEQLRRENEDLKLKLKEKNELEEFEFLEQREEKDQENELSSKVELLKEKedqiKELQRYIDAQKSETTKTDLSY 590
Cdd:TIGR00618 385 QQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRY----AELCAAAITCTAQCEKLEKIH 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 591 SSEATEDLKQAMRTLSDLDTVALDAKRESAFLRSENLELKERINELSDSCKQ-----------------MENGIQMYQRQ 653
Cdd:TIGR00618 461 LQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHpnparqdidnpgpltrrMQRGEQTYAQL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 654 LEAKKQVQAD----------LEKELQLAFQEISKLSALVDGKGLLSNlELEKRITDLQKELNKEVEEKETLQKEVHLLSE 723
Cdd:TIGR00618 541 ETSEEDVYHQltserkqrasLKEQMQEIQQSFSILTQCDNRSKEDIP-NLQNITVRLQDLTEKLSEAEDMLACEQHALLR 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 724 LKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRI--------QGLLEEIGNTKDDLAASQLSQRSSDEECQ 795
Cdd:TIGR00618 620 KLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREhalsirvlPKELLASRQLALQKMQSEKEQLTYWKEML 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 796 ALKSlhvELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQ-----MEELREKLERRDSSLQSAEKEKNLLTEK 870
Cdd:TIGR00618 700 AQCQ---TLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQslkelMHQARTVLKARTEAHFNNNEEVTAALQT 776
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958755384 871 LQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQ 929
Cdd:TIGR00618 777 GAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLS 835
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
497-718 |
2.66e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 2.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 497 ENLESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKEKNELEEFEfleQREEKDQENELSSKVELLKEKEDQIKELQRYI 576
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAAL---ARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 577 DAQKSETTK-TDLSYSSEATEDLKQAMRTLSdldtvALDAKRESAFLRSENLELKERINELSDSCKQMENGIQMYQRQLE 655
Cdd:COG4942 100 EAQKEELAElLRALYRLGRQPPLALLLSPED-----FLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958755384 656 AKKQVQADLEKELQLAFQEISKLSALVDgkgllsnlELEKRITDLQKELNKEVEEKETLQKEV 718
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLA--------RLEKELAELAAELAELQQEAEELEALI 229
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1581-1777 |
2.71e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.98 E-value: 2.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1581 QLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKimdEALREERDQLRESLR 1660
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAE---AEIEERREELGERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1661 Q--------------TEASDLEkqeklriahlDLKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASE 1726
Cdd:COG3883 94 AlyrsggsvsyldvlLGSESFS----------DFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALK 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958755384 1727 LQLLKSKVEAgetKKQLKEQGLALSKIEMENLNLAQQIHQNLEEMKSISKE 1777
Cdd:COG3883 164 AELEAAKAEL---EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1378-2177 |
2.73e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.50 E-value: 2.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1378 ELERKVQELCEKQEQLNIKETSEVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQ 1457
Cdd:pfam02463 202 LKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEK 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1458 EALHVEREQQQESIKEISTRLQELQDKEYEYLVMKSLNETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEM 1537
Cdd:pfam02463 282 KLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEEL 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1538 KSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEK 1617
Cdd:pfam02463 362 EKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIEL 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1618 LKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLR-QTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAK 1696
Cdd:pfam02463 442 KQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEqLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVG 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1697 RTEEVSDMNMEL--------ERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLNLAQQIHQNL 1768
Cdd:pfam02463 522 GRIISAHGRLGDlgvavenyKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDP 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1769 EEMKSISKERDDLKRMEEILRMEKDQLKDSLREAKFKAHQNYEETVQYGKGLLCGGEQhctgrlrEKCLRIEKLLKRYSE 1848
Cdd:pfam02463 602 ILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLA-------EKSEVKASLSELTKE 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1849 MANDYECLNRFSLDLEKETKTQKELSVTIKTKLSLPYTQTKEIEKLLTANQRCSMEFHRILKKLKYVLSYITRIKEEQHE 1928
Cdd:pfam02463 675 LLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEK 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1929 FINKFEMAFIQEVEKQNELQIKIQSLSQTSNIPSRDSQSKLSQEMDLHIEEILKDFSENDFLTIKTEVKQVLSNRKEITE 2008
Cdd:pfam02463 755 SRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEE 834
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 2009 FLEKWLNTHFDTENLKSSIQKENksiglvNNFYHSKITAMVNESTEFEERCAARAKDLERHLKALTETTEQLSKV--YQS 2086
Cdd:pfam02463 835 LEELALELKEEQKLEKLAEEELE------RLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEeeSQK 908
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 2087 LTVSWSIVRPSTQDSKDPRVALEAEQLTSKDKNALGAMPYKEEIEDLKMQLVKIDLEKKAKAKEFEKEMLAIKATVEHQE 2166
Cdd:pfam02463 909 LNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEE 988
|
810
....*....|.
gi 1958755384 2167 EVIRLLRENLR 2177
Cdd:pfam02463 989 RYNKDELEKER 999
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
562-1480 |
2.73e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.32 E-value: 2.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 562 LKEKEDQIKELQryIDAQKSETTKTDLSYSSEATEDLKQAMRtlsdLDTVALDAK------------RESAFLRSENLEL 629
Cdd:pfam01576 84 LEEEEERSQQLQ--NEKKKMQQHIQDLEEQLDEEEAARQKLQ----LEKVTTEAKikkleedillleDQNSKLSKERKLL 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 630 KERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKEL---QLAFQEISKLSALVDGKGLLSN---LELEKRITDLQKE 703
Cdd:pfam01576 158 EERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLkkeEKGRQELEKAKRKLEGESTDLQeqiAELQAQIAELRAQ 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 704 LNKEVEE---------KETLQK----------EVHLLSELKSLPSE------VETLRRELhekSEELCVITTEREKLFSE 758
Cdd:pfam01576 238 LAKKEEElqaalarleEETAQKnnalkkirelEAQISELQEDLESEraarnkAEKQRRDL---GEELEALKTELEDTLDT 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 759 MAHKDSRIQGLLEEIGNTKDDLaasQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQE 838
Cdd:pfam01576 315 TAAQQELRSKREQEVTELKKAL---EEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQA 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 839 MLNQM-------EELREKLERRDSSLQS----AEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQ 907
Cdd:pfam01576 392 ELRTLqqakqdsEHKRKKLEGQLQELQArlseSERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQ 471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 908 DTVNMNIDTQEQLLNALESLKQHQETINMLKMKATEEMSDHLPIKGREGSSD----EVEQKLDGIDEENLLAESAHTVVG 983
Cdd:pfam01576 472 DTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQaqlsDMKKKLEEDAGTLEALEEGKKRLQ 551
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 984 SGEDHGETEEQRK---IDSLLQENSRLQQTLESIIA------------EKEQLKMD--LKENIEMSVENQEElrilrdel 1046
Cdd:pfam01576 552 RELEALTQQLEEKaaaYDKLEKTKNRLQQELDDLLVdldhqrqlvsnlEKKQKKFDqmLAEEKAISARYAEE-------- 623
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1047 KRQQEIAAQEKDhvtEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMS----EMQAKVTDLENLQNEFRNQ 1122
Cdd:pfam01576 624 RDRAEAEAREKE---TRALSLARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGknvhELERSKRALEQQVEEMKTQ 700
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1123 ALALERVETERLELAQKLHENYEKMEsiTKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLkeyqei 1202
Cdd:pfam01576 701 LEELEDELQATEDAKLRLEVNMQALK--AQFERDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAK------ 772
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1203 iKELRGSISEKEAQASSTqDTGKTNPASQGETPVPREQELLPDAEEARASAEKgsELEPVEEHSRTAHSLttegiEMEIL 1282
Cdd:pfam01576 773 -KKLELDLKELEAQIDAA-NKGREEAVKQLKKLQAQMKDLQRELEEARASRDE--ILAQSKESEKKLKNL-----EAELL 843
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1283 ALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLIVSLSQKE 1362
Cdd:pfam01576 844 QLQEDLAASERARRQAQQERDELADEIASGASGKSALQDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLT 923
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1363 AELSSVRV---QLEVTTGELERKVQELCEKQEQLNIKETSEVQGKMSELDhirALLLTKDSALQSVESDRLRLNKQLEES 1439
Cdd:pfam01576 924 TELAAERStsqKSESARQQLERQNKELKAKLQEMEGTVKSKFKSSIAALE---AKIAQLEEQLEQESRERQAANKLVRRT 1000
|
970 980 990 1000
....*....|....*....|....*....|....*....|.
gi 1958755384 1440 QEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQE 1480
Cdd:pfam01576 1001 EKKLKEVLLQVEDERRHADQYKDQAEKGNSRMKQLKRQLEE 1041
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
795-969 |
2.84e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 45.86 E-value: 2.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 795 QALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQT 874
Cdd:PRK12705 52 AALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNE 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 875 LEEVRALTQE-------KNDLKQLQESLQTERDQLRSDIQDTVnmNIDTQEQLLNALEslKQHQETINMLKMKATEEMSD 947
Cdd:PRK12705 132 LYRVAGLTPEqarklllKLLDAELEEEKAQRVKKIEEEADLEA--ERKAQNILAQAMQ--RIASETASDLSVSVVPIPSD 207
|
170 180
....*....|....*....|....
gi 1958755384 948 HL--PIKGREGSSDEVEQKLDGID 969
Cdd:PRK12705 208 AMkgRIIGREGRNIRAFEGLTGVD 231
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
764-971 |
2.85e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 2.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 764 SRIQGLLEEIGNTKDDLAASQLSQRSSDEEcqaLKSLHVELKHRQEEVleesERVKQELSQKTQELAQKTAEGQEMLNQM 843
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQ---LAALERRIAALARRI----RALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 844 EELREKLERRDSSLQS------------------AEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSD 905
Cdd:COG4942 100 EAQKEELAELLRALYRlgrqpplalllspedfldAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958755384 906 IQDtvnmnidtQEQLLNALESLKQHQETinMLKMKATEEMSDHLPIKGREGSSDEVEQKLDGIDEE 971
Cdd:COG4942 180 LAE--------LEEERAALEALKAERQK--LLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
1310-1546 |
2.89e-04 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 46.17 E-value: 2.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1310 EALQVecAQLKDDARRTLANHLETEEELSLARCC-LKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCE 1388
Cdd:pfam05667 304 EKLQF--TNEAPAATSSPPTKVETEEELQQQREEeLEELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNEE 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1389 KQEQLNIKETS-----EVQGKMSELDhirallltkdSALQSVESDRLRLNKQLEESQEEikiLIKEREELRRAQEALHVE 1463
Cdd:pfam05667 382 LEKQYKVKKKTldllpDAEENIAKLQ----------ALVDASAQRLVELAGQWEKHRVP---LIEEYRALKEAKSNKEDE 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1464 REQQQESIKEISTRLQELQDKeyeyLVMKslnetqgnkcEDLNQQLEAQKSSLEKvEMQNVNLTQRLNETleeMKSVAKE 1543
Cdd:pfam05667 449 SQRKLEEIKELREKIKEVAEE----AKQK----------EELYKQLVAEYERLPK-DVSRSAYTRRILEI---VKNIKKQ 510
|
...
gi 1958755384 1544 RDE 1546
Cdd:pfam05667 511 KEE 513
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
1025-1560 |
3.12e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 46.28 E-value: 3.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1025 LKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEEL------SRAHERLAE-----------IEEKLKEKNQK 1087
Cdd:pfam07111 61 LSQQAELISRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELdalavaEKAGQAEAEglraalagaemVRKNLEEGSQR 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1088 LQETQQQLVsiQEAMSEM-QAKVTDLENLQNEFRNQALALERVETERLELAQKLHENYEKMESItkeRNDLKELQESFEI 1166
Cdd:pfam07111 141 ELEEIQRLH--QEQLSSLtQAHEEALSSLTSKAEGLEKSLNSLETKRAGEAKQLAEAQKEAELL---RKQLSKTQEELEA 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1167 EK---KQLKEYAREM-------------ESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAqASSTQDTGKTNPAS 1230
Cdd:pfam07111 216 QVtlvESLRKYVGEQvppevhsqtweleRQELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLA-LQEEELTRKIQPSD 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1231 QGETPVPRE-QELLPDAEE---ARASAEKGSELEpveehsrtaHSLTTEGIEMEILALTKKLEESQKEISCLTKERSDL- 1305
Cdd:pfam07111 295 SLEPEFPKKcRSLLNRWREkvfALMVQLKAQDLE---------HRDSVKQLRGQVAELQEQVTSQSQEQAILQRALQDKa 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1306 ------RRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTT--- 1376
Cdd:pfam07111 366 aeveveRMSAKGLQMELSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAVrkv 445
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1377 ----GELERKVQELCEKQEQLNIKETSE-VQGKMS-ELDHIRALLLTKDSALQ----SVESDRLRLNKQLE-ESQEEIKI 1445
Cdd:pfam07111 446 htikGLMARKVALAQLRQESCPPPPPAPpVDADLSlELEQLREERNRLDAELQlsahLIQQEVGRAREQGEaERQQLSEV 525
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1446 LIKEREELRRAQEAL-------HVEREQQQESIKEISTRLQELQDKEYEYlvMKSLNETQGNKCEDLNQQLEAQKSSLEK 1518
Cdd:pfam07111 526 AQQLEQELQRAQESLasvgqqlEVARQGQQESTEEAASLRQELTQQQEIY--GQALQEKVAEVETRLREQLSDTKRRLNE 603
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 1958755384 1519 VEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQ 1560
Cdd:pfam07111 604 ARREQAKAVVSLRQIQHRATQEKERNQELRRLQDEARKEEGQ 645
|
|
| CHASE3 |
COG5278 |
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms]; |
807-1254 |
3.46e-04 |
|
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];
Pssm-ID: 444089 [Multi-domain] Cd Length: 530 Bit Score: 45.67 E-value: 3.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 807 RQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSA----------EKEKNLLTEKLQQTLE 876
Cdd:COG5278 73 GDESFLEPYEEARAEIDELLAELRSLTADNPEQQARLDELEALIDQWLAELEQVialrraggleAALALVRSGEGKALMD 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 877 EVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKMKATEEMSDHLPIKGREG 956
Cdd:COG5278 153 EIRARLLLLALALAALLLAAAALLLLLLALAALLALAELLLLALARALAALLLLLLLEAELAAAAALLAAAAALAALAAL 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 957 SSDEVEQKLDGIDEENLLAESAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQ 1036
Cdd:COG5278 233 ELLAALALALALLLAALLLALLAALALAALLAAALLALAALLLALAAAAALAAAAALELAAAEALALAELELELLLAAAA 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1037 EELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLENLQ 1116
Cdd:COG5278 313 AAAAAAAAAAAALAALLALALATALAAAAAALALLAALLAEAAAAAAEEAEAAAEAAAAALAGLAEVEAEGAAEAVELEV 392
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1117 NEFRNQALALERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANL 1196
Cdd:COG5278 393 LAIAAAAAAAAAEAAAAAAAAAAASAAEALELAEALAEALALAEEEALALAAASSELAEAGAALALAAAEALAEELAAVA 472
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755384 1197 KEYQEIIKELRGSISEKEAQASSTQDTGKTNPASQGETPVPREQELLPDAEEARASAE 1254
Cdd:COG5278 473 ALAALAAAAAALAEAEAAAALAAAAALSLALALAALLLAAAEAALAAALAAALASAEL 530
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1536-1808 |
3.56e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.98 E-value: 3.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1536 EMKSVAKERDELRSVEERLTADRDQLKKSLE-ETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIE 1614
Cdd:pfam12128 259 RLSHLHFGYKSDETLIASRQEERQETSAELNqLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDAD 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1615 IEKLKLTQ-QLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERlmgS 1693
Cdd:pfam12128 339 IETAAADQeQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAE---D 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1694 VAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALskiemenlnlaqqIHQNLEEMKS 1773
Cdd:pfam12128 416 DLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDER-------------IERAREEQEA 482
|
250 260 270
....*....|....*....|....*....|....*
gi 1958755384 1774 ISKERDDLKRMEEILRMEKDQLKDSLREAKFKAHQ 1808
Cdd:pfam12128 483 ANAEVERLQSELRQARKRRDQASEALRQASRRLEE 517
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1395-1812 |
3.57e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.78 E-value: 3.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1395 IKETSEVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEIKILIKE------------------REELRRA 1456
Cdd:TIGR04523 29 NKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQikdlndklkknkdkinklNSDLSKI 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1457 QEALHVEREQQQESIKEISTRLQELQDKE-------YEYLVMKSLNETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQ- 1528
Cdd:TIGR04523 109 NSEIKNDKEQKNKLEVELNKLEKQKKENKknidkflTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKn 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1529 ---------RLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEEtitKNQELQEKGHQLSQVKADLRETMDQMEQL 1599
Cdd:TIGR04523 189 idkiknkllKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEK---KQQEINEKTTEISNTQTQLNQLKDEQNKI 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1600 KEQLEAQNSTLESIEIEKLKLTQQLNEnlkemtlvakenddLKIMDEALREERDQLRESLRQTEASDleKQEKLRIAHLD 1679
Cdd:TIGR04523 266 KKQLSEKQKELEQNNKKIKELEKQLNQ--------------LKSEISDLNNQKEQDWNKELKSELKN--QEKKLEEIQNQ 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1680 LKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLN 1759
Cdd:TIGR04523 330 ISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQ 409
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 1958755384 1760 LAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQL--KDSLREAKFKAHQNYEE 1812
Cdd:TIGR04523 410 KDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLtnQDSVKELIIKNLDNTRE 464
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1565-1723 |
3.73e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 45.34 E-value: 3.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1565 LEETIT-KNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKi 1643
Cdd:PRK09039 44 LSREISgKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELA- 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1644 mdEALREERDQLRESLRQTEasDLEKQeklrIAHLdlKEHQETIERLMGSVAKRTEE----VSDMNMELeraNTRLQEKV 1719
Cdd:PRK09039 123 --QELDSEKQVSARALAQVE--LLNQQ----IAAL--RRQLAALEAALDASEKRDREsqakIADLGRRL---NVALAQRV 189
|
....
gi 1958755384 1720 QELK 1723
Cdd:PRK09039 190 QELN 193
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
751-918 |
3.84e-04 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 45.13 E-value: 3.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 751 EREKLFSEMAHKDSRIQGLLEEIGNTKDDLaasQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELA 830
Cdd:pfam09787 55 ERDLLREEIQKLRGQIQQLRTELQELEAQQ---QEEAESSREQLQELEEQLATERSARREAEAELERLQEELRYLEEELR 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 831 QKTAEGQEMLNQMEELREKLE-----RRDSSLQSAEKEKNL--LTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLR 903
Cdd:pfam09787 132 RSKATLQSRIKDREAEIEKLRnqltsKSQSSSSQSELENRLhqLTETLIQKQTMLEALSTEKNSLVLQLERMEQQIKELQ 211
|
170
....*....|....*
gi 1958755384 904 SDIQDTVNMNIDTQE 918
Cdd:pfam09787 212 GEGSNGTSINMEGIS 226
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
1055-1255 |
4.48e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 45.98 E-value: 4.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1055 QEKDHVTEKSEELSRAHERLAEiEEKLKEKNQKL-QETQQQLVSIQEAMSEMQAkvTDLENLQNEFRNQALALErveter 1133
Cdd:NF012221 1542 QQADAVSKHAKQDDAAQNALAD-KERAEADRQRLeQEKQQQLAAISGSQSQLES--TDQNALETNGQAQRDAIL------ 1612
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1134 lelaqklhenyEKMESITKErndLKELQESFEiekkQLKEYAREMESAGLQTKEQLniAHANLKEYQEIIKELRGSISEK 1213
Cdd:NF012221 1613 -----------EESRAVTKE---LTTLAQGLD----ALDSQATYAGESGDQWRNPF--AGGLLDRVQEQLDDAKKISGKQ 1672
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1958755384 1214 EAQASST---QDTGKTNPASQGETPVPREQELLPDAE----EARASAEK 1255
Cdd:NF012221 1673 LADAKQRhvdNQQKVKDAVAKSEAGVAQGEQNQANAEqdidDAKADAEK 1721
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
916-1308 |
4.67e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 4.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 916 TQEQLLNALESLKQHQETINmlkmkateemsdhlpikgregsSDEVEQKLDGIDEENLLAESAhtvvgsgEDHGETEEQR 995
Cdd:pfam17380 266 TENEFLNQLLHIVQHQKAVS----------------------ERQQQEKFEKMEQERLRQEKE-------EKAREVERRR 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 996 KIDSLLQENSRLQQTLESIIAEKEQLKMDlkeniemsvENQEELRILRDELKRQQEIAAQEkdhvtekseELSRAHERLA 1075
Cdd:pfam17380 317 KLEEAEKARQAEMDRQAAIYAEQERMAME---------RERELERIRQEERKRELERIRQE---------EIAMEISRMR 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1076 EIEEKLKEKNQKLQETQQQLvsiqeamsEMQAKVTDLEN-LQNEFRNQALALERVETERLELAQklhenyEKMESITKER 1154
Cdd:pfam17380 379 ELERLQMERQQKNERVRQEL--------EAARKVKILEEeRQRKIQQQKVEMEQIRAEQEEARQ------REVRRLEEER 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1155 NDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNiahaNLKEYQEIIKELRGSISEKEAQASSTQDTGKTNPASQGET 1234
Cdd:pfam17380 445 AREMERVRLEEQERQQQVERLRQQEEERKRKKLELE----KEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEK 520
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958755384 1235 PVPREQELLPDAEEARASAEKGSELEPVEEHSRTAHSLTTEGIEMEILALTKKLEESQKEISCLTKERSDLRRT 1308
Cdd:pfam17380 521 EMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAEYEAT 594
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
499-1164 |
5.19e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 45.28 E-value: 5.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 499 LESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKEKNELEEFEFLEQREEKdqenELSSKVELLKEKEDQIKELQRYIDA 578
Cdd:PRK01156 171 LKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIE----RLSIEYNNAMDDYNNLKSALNELSS 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 579 QKSETTKTDlsysseatEDLKQAMRTLSDLDtvaldakRESAFLRSENLELKERINELSDSCKQMENGIQMYQRQLEAKK 658
Cdd:PRK01156 247 LEDMKNRYE--------SEIKTAESDLSMEL-------EKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKK 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 659 QVQADLEKELQLAFQEISKLSALvdGKGLLSNLELEKRITDLQKELNkevEEKETLQKEVHLLSELKSLPSEVETLRREL 738
Cdd:PRK01156 312 QILSNIDAEINKYHAIIKKLSVL--QKDYNDYIKKKSRYDDLNNQIL---ELEGYEMDYNSYLKSIESLKKKIEEYSKNI 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 739 HEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSdeecqalkslhvelkhrqeevLEESERV 818
Cdd:PRK01156 387 ERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALREN---------------------LDELSRN 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 819 KQELSQKTQELAQKTAEGQEMLNQMEElreklerrdsslqSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTE 898
Cdd:PRK01156 446 MEMLNGQSVCPVCGTTLGEEKSNHIIN-------------HYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESE 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 899 RdqlrsdiqdtVNMNIDTQEQLLNALESLKQHQETINMLKMKATeemsdhlpiKGREGSSDEVEQKLDGIDEENLLAESA 978
Cdd:PRK01156 513 E----------INKSINEYNKIESARADLEDIKIKINELKDKHD---------KYEEIKNRYKSLKLEDLDSKRTSWLNA 573
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 979 HTVVGSGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKD 1058
Cdd:PRK01156 574 LAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKID 653
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1059 HVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLENLQNEFrNQALAlerveterlelaq 1138
Cdd:PRK01156 654 NYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINEL-SDRIN------------- 719
|
650 660
....*....|....*....|....*.
gi 1958755384 1139 KLHENYEKMESITKERNDLKELQESF 1164
Cdd:PRK01156 720 DINETLESMKKIKKAIGDLKRLREAF 745
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
691-1610 |
5.19e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.55 E-value: 5.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 691 LELEKRITDLQKELNKEVEEKETLQKEVHLLSELKslpSEVETLRRELHEKSEELCVITTE------------------- 751
Cdd:pfam01576 22 QKAESELKELEKKHQQLCEEKNALQEQLQAETELC---AEAEEMRARLAARKQELEEILHElesrleeeeersqqlqnek 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 752 --------------------REKLFSEMAHKDSRIQGLLEEI-----GNTKDDLAASQLSQRSSD------EECQALKSL 800
Cdd:pfam01576 99 kkmqqhiqdleeqldeeeaaRQKLQLEKVTTEAKIKKLEEDIllledQNSKLSKERKLLEERISEftsnlaEEEEKAKSL 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 801 HvELKHRQEEV-------LEESERVKQELSQKTQELAQKTAEGQE----MLNQMEELREKLERRDSSLQSAEkekNLLTE 869
Cdd:pfam01576 179 S-KLKNKHEAMisdleerLKKEEKGRQELEKAKRKLEGESTDLQEqiaeLQAQIAELRAQLAKKEEELQAAL---ARLEE 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 870 KLQQTLEEVRALTQEKNDLKQLQESLQTERDQ-----------------LRSDIQDTVNMNIDTQE----------QLLN 922
Cdd:pfam01576 255 ETAQKNNALKKIRELEAQISELQEDLESERAArnkaekqrrdlgeeleaLKTELEDTLDTTAAQQElrskreqevtELKK 334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 923 ALES-LKQHQETINMLKMK---ATEEMSDHLPIKGREGSSdeVEQKLDGIDEENLLAESAHTVVGSGEDHGETeEQRKID 998
Cdd:pfam01576 335 ALEEeTRSHEAQLQEMRQKhtqALEELTEQLEQAKRNKAN--LEKAKQALESENAELQAELRTLQQAKQDSEH-KRKKLE 411
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 999 SLLQE-NSRLQQT----------LESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEEL 1067
Cdd:pfam01576 412 GQLQElQARLSESerqraelaekLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRL 491
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1068 SRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKV------------------TDLENLQNEFRNQALALERV 1129
Cdd:pfam01576 492 RQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLeedagtlealeegkkrlqRELEALTQQLEEKAAAYDKL 571
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1130 ETERLELAQKLHENYEKMESITKERNDLKELQESFEI----EKKQLKEYAREMESAGLQTKEQ----LNIAHAnLKEYQE 1201
Cdd:pfam01576 572 EKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQmlaeEKAISARYAEERDRAEAEAREKetraLSLARA-LEEALE 650
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1202 IIKEL----RGSISEKEAQASSTQDTGKTnpasqgetpvpreqellpdaeearasaekgselepVEEHSRTAHSLTTEGI 1277
Cdd:pfam01576 651 AKEELertnKQLRAEMEDLVSSKDDVGKN-----------------------------------VHELERSKRALEQQVE 695
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1278 EMEilaltKKLEESQKEISclTKERSDLRrtqeaLQVECAQLKDDARRTLANHLETEEElslARCCLKEQENKIDSLIVS 1357
Cdd:pfam01576 696 EMK-----TQLEELEDELQ--ATEDAKLR-----LEVNMQALKAQFERDLQARDEQGEE---KRRQLVKQVRELEAELED 760
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1358 LSQKEAELSSVRVQLEVTTGELERKVqELCEKQEQLNIKETSEVQGKMSEL-----------DHIRALLLTKDSALQSVE 1426
Cdd:pfam01576 761 ERKQRAQAVAAKKKLELDLKELEAQI-DAANKGREEAVKQLKKLQAQMKDLqreleearasrDEILAQSKESEKKLKNLE 839
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1427 SDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDK-EYEYLVMKSLNETQGN---KC 1502
Cdd:pfam01576 840 AELLQLQEDLAASERARRQAQQERDELADEIASGASGKSALQDEKRRLEARIAQLEEElEEEQSNTELLNDRLRKstlQV 919
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1503 EDLNQQLEAQKSSLEKVE-------MQNVNLTQRLNETLEEMKSvaKERDELRSVEERLTADRDQLKKSLEETITKNQEL 1575
Cdd:pfam01576 920 EQLTTELAAERSTSQKSEsarqqleRQNKELKAKLQEMEGTVKS--KFKSSIAALEAKIAQLEEQLEQESRERQAANKLV 997
|
1050 1060 1070
....*....|....*....|....*....|....*
gi 1958755384 1576 QEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTL 1610
Cdd:pfam01576 998 RRTEKKLKEVLLQVEDERRHADQYKDQAEKGNSRM 1032
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1238-1503 |
5.40e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 5.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1238 REQELLPDAEEARASAEKGSELEPVEEHSRTAHSLTTEGIEMEILA--------LTKKLEESQKEISCLTKERSDLRRTQ 1309
Cdd:pfam17380 288 QQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAaiyaeqerMAMERERELERIRQEERKRELERIRQ 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1310 EALQVECAQLKDDARRTLANHLETE---EELSLARCC--------LKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGE 1378
Cdd:pfam17380 368 EEIAMEISRMRELERLQMERQQKNErvrQELEAARKVkileeerqRKIQQQKVEMEQIRAEQEEARQREVRRLEEERARE 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1379 LERKVQELCEKQEQLNIKETSEV------------QGKMSELDHIRALLLTKD-----SALQSVESDRLRLNKQLEESQE 1441
Cdd:pfam17380 448 MERVRLEEQERQQQVERLRQQEEerkrkklelekeKRDRKRAEEQRRKILEKEleerkQAMIEEERKRKLLEKEMEERQK 527
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958755384 1442 EIKILIKER--EELRRAQEALHvEREQQQESIKEISTRLQELQDKEYEYLVMKSLNETQGNKCE 1503
Cdd:pfam17380 528 AIYEEERRReaEEERRKQQEME-ERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAE 590
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
915-1155 |
5.41e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 5.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 915 DTQEQLLNALESLKQHQETINMLKMKATEEMSDhlpIKGREGSSDEVEQKLDGIDEEnllaesahtvvgsgedhgETEEQ 994
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQ---LAALERRIAALARRIRALEQE------------------LAALE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 995 RKIDSLLQENSRLQQTLESIIAEKEQL-----KMDLKENIEMSVENQEELRILRDeLKRQQEIAAQEKDHVTEKSEELSR 1069
Cdd:COG4942 83 AELAELEKEIAELRAELEAQKEELAELlralyRLGRQPPLALLLSPEDFLDAVRR-LQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1070 AHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLENLQNEFRNQALALERVETERLELAQKLHENYEKMES 1149
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
....*.
gi 1958755384 1150 ITKERN 1155
Cdd:COG4942 242 RTPAAG 247
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
994-1209 |
5.84e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.89 E-value: 5.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 994 QRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHER 1073
Cdd:pfam07888 33 QNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1074 LAEIEEKLKEKNQKLQETQQQLVSIQEAMSE-MQAKVTDLENLQNEFRNQALALERVETERLELAQKLHENYEKMESITK 1152
Cdd:pfam07888 113 LSEEKDALLAQRAAHEARIRELEEDIKTLTQrVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSK 192
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958755384 1153 ERNDLKELQESFEIEKKQLKEYARemesaglQTKEQLNIAHANLKEYQEIIKELRGS 1209
Cdd:pfam07888 193 EFQELRNSLAQRDTQVLQLQDTIT-------TLTQKLTTAHRKEAENEALLEELRSL 242
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1505-1742 |
5.97e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.01 E-value: 5.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1505 LNQQLEAQKSSLEKVemqnvnlTQRLNETLEEMksvakeRDELRSVEERLTA--------DRDQLKKSLEETITKNQElq 1576
Cdd:COG3206 162 LEQNLELRREEARKA-------LEFLEEQLPEL------RKELEEAEAALEEfrqknglvDLSEEAKLLLQQLSELES-- 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1577 ekghQLSQVKADLRETMDQMEQLKEQLE---------AQNSTLESIEIEKLKLTQQLNENLKEMTlvaKENDDLKimdeA 1647
Cdd:COG3206 227 ----QLAEARAELAEAEARLAALRAQLGsgpdalpelLQSPVIQQLRAQLAELEAELAELSARYT---PNHPDVI----A 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1648 LREERDQLRESLRQteasdlEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSDMNmELERANTRLQEKVQELKASEL 1727
Cdd:COG3206 296 LRAQIAALRAQLQQ------EAQRILASLEAELEALQAREASLQAQLAQLEARLAELP-ELEAELRRLEREVEVARELYE 368
|
250
....*....|....*
gi 1958755384 1728 QLLKSKVEAGETKKQ 1742
Cdd:COG3206 369 SLLQRLEEARLAEAL 383
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1280-2169 |
6.83e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.96 E-value: 6.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1280 EILALTKKLEESQ-KEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLIVSL 1358
Cdd:pfam02463 145 EIIAMMKPERRLEiEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1359 SQKEAELSSVRVQLEVTTGELERKVQELCEKQEQLNIKETSEVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEE 1438
Cdd:pfam02463 225 YLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLK 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1439 SQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEYLVMKSLNETQGNKCEDLNQQLEAQKSSLEK 1518
Cdd:pfam02463 305 LERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESE 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1519 VEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQLSQVKADLRETMDQMEQ 1598
Cdd:pfam02463 385 RLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDE 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1599 LKEQLEAQNSTLESIEIEKLKLTQQLNE-NLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAH 1677
Cdd:pfam02463 465 LELKKSEDLLKETQLVKLQEQLELLLSRqKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVA 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1678 LDLKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQ--------GLA 1749
Cdd:pfam02463 545 ISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLeadeddkrAKV 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1750 LSKIEMENLNLAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQLKDSLREAKFKAHQNYEETVQYGKGLLCGGEQHCT 1829
Cdd:pfam02463 625 VEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKK 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1830 GRLREKCLRIEKLLKRYSEMANDYECLNRFSLDLEKETKTQKELS-VTIKTKLSLPYTQTKEIEKLLTANQRCSMEFHRI 1908
Cdd:pfam02463 705 EQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEeEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTE 784
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1909 LKKLKYVLSYITRIKEEQhefINKFEMAFIQEVEKQNELQIKIQSLSQTSNIPSRDSQSKLSQEMDLHIEEILKDFSEND 1988
Cdd:pfam02463 785 KLKVEEEKEEKLKAQEEE---LRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEE 861
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1989 FLTIKTEVKQVLSNRKEITEFLEKWLNTHFDTENLKSSIQKENKSiglvnnfyhsKITAMVNESTEFEERCAARAKDLER 2068
Cdd:pfam02463 862 EITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEES----------QKLNLLEEKENEIEERIKEEAEILL 931
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 2069 HLKALTETteqlSKVYQSLTVSWSIVRPSTQDSKDPRVALEAEQLTSKDKNALGAMPYKEEIEDLKMQLVKIDLEKKAKA 2148
Cdd:pfam02463 932 KYEEEPEE----LLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKL 1007
|
890 900
....*....|....*....|.
gi 1958755384 2149 KEFEKEMLAIKATVEHQEEVI 2169
Cdd:pfam02463 1008 IRAIIEETCQRLKEFLELFVS 1028
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
992-1095 |
8.02e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 44.82 E-value: 8.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 992 EEQRKIDSL---LQENSRLQQT----LESIIAEKEQLKMDLKENIEmsvENQEELRILRDELKR--QQEIAA-------- 1054
Cdd:PRK00409 513 EDKEKLNELiasLEELERELEQkaeeAEALLKEAEKLKEELEEKKE---KLQEEEDKLLEEAEKeaQQAIKEakkeadei 589
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1958755384 1055 -------QEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQL 1095
Cdd:PRK00409 590 ikelrqlQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEEL 637
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1590-1801 |
8.29e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 8.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1590 RETMDQMEQLKEQLEAQNSTLESIEI--EKLKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDL 1667
Cdd:COG4913 221 PDTFEAADALVEHFDDLERAHEALEDarEQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEEL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1668 EK-----QEKLRIAHLDLKEHQETIERLMGSVAKR-TEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKK 1741
Cdd:COG4913 301 RAelarlEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAE 380
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958755384 1742 QLKEqglalskiemenlnLAQQIHQNLEEMKSISK----ERDDLKRMEEILRMEKDQLKDSLRE 1801
Cdd:COG4913 381 EFAA--------------LRAEAAALLEALEEELEaleeALAEAEAALRDLRRELRELEAEIAS 430
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
1407-1663 |
8.45e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 43.75 E-value: 8.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1407 ELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEY 1486
Cdd:COG1340 23 EIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEERDELNEKLNELREELDELRKELA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1487 EYLVMKSLNETQGNKCEDLNQQLEAQKSSLEKvEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLE 1566
Cdd:COG1340 103 ELNKAGGSIDKLRKEIERLEWRQQTEVLSPEE-EKELVEKIKELEKELEKAKKALEKNEKLKELRAELKELRKEAEEIHK 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1567 ETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLK--IM 1644
Cdd:COG1340 182 KIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEAQEKADELHEEIIELQKELRELRKELKKLRKKQRALKreKE 261
|
250
....*....|....*....
gi 1958755384 1645 DEALREERDQLRESLRQTE 1663
Cdd:COG1340 262 KEELEEKAEEIFEKLKKGE 280
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
431-1173 |
8.72e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.04 E-value: 8.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 431 SNYVKEFKIPTNITTRTRKTSVTPLRENSLMKLGESALswESEVFDNTLEPLAEAEWSSATALLSEEnleselTSLNTQY 510
Cdd:TIGR01612 1371 TKEIEENNKNIKDELDKSEKLIKKIKDDINLEECKSKI--ESTLDDKDIDECIKKIKELKNHILSEE------SNIDTYF 1442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 511 NNLvldyeqlRRENEDLKLKLkekNELEEFEFLEQREEKDQENELSSKVELlkekedQIKELQRYIDaqKSETTKTDLSY 590
Cdd:TIGR01612 1443 KNA-------DENNENVLLLF---KNIEMADNKSQHILKIKKDNATNDHDF------NINELKEHID--KSKGCKDEADK 1504
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 591 SSEATEDLKQAMRTLSDLDTVALDAKREsaflrsenLELKERINELSDSCKQMENGIQMYQRQ--LEAKKQVQA--DLEK 666
Cdd:TIGR01612 1505 NAKAIEKNKELFEQYKKDVTELLNKYSA--------LAIKNKFAKTKKDSEIIIKEIKDAHKKfiLEAEKSEQKikEIKK 1576
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 667 ELQLAFQEISKLS----ALVDGKGLLSNLELE-KRITDLQKELNKEVEEKETLQKEVHLLS------ELKSLPSEVETL- 734
Cdd:TIGR01612 1577 EKFRIEDDAAKNDksnkAAIDIQLSLENFENKfLKISDIKKKINDCLKETESIEKKISSFSidsqdtELKENGDNLNSLq 1656
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 735 ---------RRELHEKSEELCVITTEREKLFSEM-AHKDSRIQGLLEEIGNT----KDDLAASQLSQRSSDEEC------ 794
Cdd:TIGR01612 1657 efleslkdqKKNIEDKKKELDELDSEIEKIEIDVdQHKKNYEIGIIEKIKEIaianKEEIESIKELIEPTIENLissfnt 1736
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 795 ---------QALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLE---RRDSSLQSAE- 861
Cdd:TIGR01612 1737 ndlegidpnEKLEEYNTEIGDIYEEFIELYNIIAGCLETVSKEPITYDEIKNTRINAQNEFLKIIEiekKSKSYLDDIEa 1816
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 862 KEKNLLTEKLQQTLEEVR-ALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNI--DTQEQLLNALE----SLKQHQETI 934
Cdd:TIGR01612 1817 KEFDRIINHFKKKLDHVNdKFTKEYSKINEGFDDISKSIENVKNSTDENLLFDIlnKTKDAYAGIIGkkyySYKDEAEKI 1896
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 935 --NMLKMKateeMSDHLPIKGREGSSDEVEQKLDGIDEENLLAESAHTVVGSGEDHGE--TEEQRKIDSLLQENSRLQQT 1010
Cdd:TIGR01612 1897 fiNISKLA----NSINIQIQNNSGIDLFDNINIAILSSLDSEKEDTLKFIPSPEKEPEiyTKIRDSYDTLLDIFKKSQDL 1972
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1011 lesiiAEKEQLKMDL---KENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEEL------SRAHERLAEI--EE 1079
Cdd:TIGR01612 1973 -----HKKEQDTLNIifeNQQLYEKIQASNELKDTLSDLKYKKEKILNDVKLLLHKFDELnklscdSQNYDTILELskQD 2047
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1080 KLKEKNQKLQETQQQLVsiqeamseMQAKVTDLENlqnEFRNQALALERVETERLELAQKLHENYEKMESITKERNDLKE 1159
Cdd:TIGR01612 2048 KIKEKIDNYEKEKEKFG--------IDFDVKAMEE---KFDNDIKDIEKFENNYKHSEKDNHDFSEEKDNIIQSKKKLKE 2116
|
810
....*....|....
gi 1958755384 1160 LQESFEIEKKQLKE 1173
Cdd:TIGR01612 2117 LTEAFNTEIKIIED 2130
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
1043-1255 |
1.00e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 43.91 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1043 RDELKR-QQEIAAQEKDhVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLENLQNE--- 1118
Cdd:PRK11637 46 RDQLKSiQQDIAAKEKS-VRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAqer 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1119 ---------FR---NQALAL-----ERVETERLeLAQKLHENYEKMESITkernDLKELQESFEIEKKQLKEYAREMESA 1181
Cdd:PRK11637 125 llaaqldaaFRqgeHTGLQLilsgeESQRGERI-LAYFGYLNQARQETIA----ELKQTREELAAQKAELEEKQSQQKTL 199
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958755384 1182 GLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQdtgktnpasQGETpvpREQELLPDAE-EARASAEK 1255
Cdd:PRK11637 200 LYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELR---------ANES---RLRDSIARAErEAKARAER 262
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
694-950 |
1.07e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 44.51 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 694 EKRITDLQkELNKEVEEKETLQKEVHLLsELKSlpSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEI 773
Cdd:PLN02939 149 QARLQALE-DLEKILTEKEALQGKINIL-EMRL--SETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSL 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 774 GNTKDDLAASQLSQRssdEECQALKSLHVELKHRQEEVLE-ESERVKQELSqkTQELAQKTAEGQEMLNQMEELR----- 847
Cdd:PLN02939 225 SKELDVLKEENMLLK---DDIQFLKAELIEVAETEERVFKlEKERSLLDAS--LRELESKFIVAQEDVSKLSPLQydcww 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 848 EKLERRDSSLQSAEK--EKNLLT-----------EKLQQTLEE--VRALTQEKNDLKQLQESLQTERDQlRSDIQdtvnm 912
Cdd:PLN02939 300 EKVENLQDLLDRATNqvEKAALVldqnqdlrdkvDKLEASLKEanVSKFSSYKVELLQQKLKLLEERLQ-ASDHE----- 373
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1958755384 913 nIDTQEQLLNalESLKQHQETINML----KMKATEEMSDHLP 950
Cdd:PLN02939 374 -IHSYIQLYQ--ESIKEFQDTLSKLkeesKKRSLEHPADDMP 412
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1285-1605 |
1.10e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.12 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1285 TKKLEESQKEIS----CLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLarccLKEQENKidsLIVSLSQ 1360
Cdd:pfam07888 96 HEELEEKYKELSasseELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELER----MKERAKK---AGAQRKE 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1361 KEAELSSVRVQLEVTTGELERKVQELCEKQEQLNIKETS--EVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEE 1438
Cdd:pfam07888 169 EEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQvlQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNA 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1439 SQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQdkeyeyLVMKSLNETQGNKCEDLNQQLEAQKSSLEK 1518
Cdd:pfam07888 249 SERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADAS------LALREGRARWAQERETLQQSAEADKDRIEK 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1519 VEMQnvnlTQRLNETLEEmksvakERDELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQLS----QVKADLRETMD 1594
Cdd:pfam07888 323 LSAE----LQRLEERLQE------ERMEREKLEVELGREKDCNRVQLSESRRELQELKASLRVAQkekeQLQAEKQELLE 392
|
330
....*....|.
gi 1958755384 1595 QMEQLKEQLEA 1605
Cdd:pfam07888 393 YIRQLEQRLET 403
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1371-1812 |
1.19e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.44 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1371 QLEVTTGELERKVQELCEKQEQLNIKETSEVQGKMSELDHIRALL----LTKDSALQSVESDRLrlnkqLEESQEEIKIL 1446
Cdd:pfam12128 409 QLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLnqatATPELLLQLENFDER-----IERAREEQEAA 483
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1447 IKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEylVMKSLNETQGNKCEDLNQQLEAQKSSLEKVemqnVNL 1526
Cdd:pfam12128 484 NAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDE--LELQLFPQAGTLLHFLRKEAPDWEQSIGKV----ISP 557
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1527 TQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEetitKNQELQEKghqLSQVKADLRETMDQMEQLKEQLEAQ 1606
Cdd:pfam12128 558 ELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAA----SEEELRER---LDKAEEALQSAREKQAAAEEQLVQA 630
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1607 NSTLESIEIEK---LKLTQQLNENLKEMTlVAKENDDLKImDEALREERDQLRESLRQTEAsdleKQEKLRIAHLDLKEH 1683
Cdd:pfam12128 631 NGELEKASREEtfaRTALKNARLDLRRLF-DEKQSEKDKK-NKALAERKDSANERLNSLEA----QLKQLDKKHQAWLEE 704
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1684 Q--ETIERLMGSVAKRTEEVSDMNMELERANTRLqEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLnla 1761
Cdd:pfam12128 705 QkeQKREARTEKQAYWQVVEGALDAQLALLKAAI-AARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTL--- 780
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 1958755384 1762 qqiHQNLEEmksISKERDDLKRMEEILRMEKDQLKDSLREAKFKAHQNYEE 1812
Cdd:pfam12128 781 ---ERKIER---IAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISE 825
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
1509-1778 |
1.19e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 44.27 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1509 LEAQKSSLEKV-EMQNV-----NLTQRLNETLeemksvAKERDELRSVEERLTADrdqlkkSLEETITK-NQELQEKGHQ 1581
Cdd:PRK10929 57 LEERKGSLERAkQYQQVidnfpKLSAELRQQL------NNERDEPRSVPPNMSTD------ALEQEILQvSSQLLEKSRQ 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1582 LSQVKADLRETMDQMEQLKEQLEAQNSTLESIEieklkltQQLNENLKEMTLVAkenddlkimdealreerdQLRESLRQ 1661
Cdd:PRK10929 125 AQQEQDRAREISDSLSQLPQQQTEARRQLNEIE-------RRLQTLGTPNTPLA------------------QAQLTALQ 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1662 TEASDLE-KQEKLRIAHLDLKEHQEtIERLMGSVAKRTEEVSDMNMELERANTRLQEKvqelKASELQLlkskveagETK 1740
Cdd:PRK10929 180 AESAALKaLVDELELAQLSANNRQE-LARLRSELAKKRSQQLDAYLQALRNQLNSQRQ----REAERAL--------EST 246
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1958755384 1741 KQLKEQGLALSKIEMENL----NLAQQIHQNLEEMKSI-SKER 1778
Cdd:PRK10929 247 ELLAEQSGDLPKSIVAQFkinrELSQALNQQAQRMDLIaSQQR 289
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
1006-1139 |
1.32e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 43.93 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1006 RLQQTLESIIAEKEQLKMDLKENIEMSVENQE-ELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEK 1084
Cdd:PRK12705 38 ILQEAQKEAEEKLEAALLEAKELLLRERNQQRqEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSAR 117
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755384 1085 NQKLQETQQQL---VSIQEAMSEMQAKVTDLENLQNEFRNQALALERVETERLELAQK 1139
Cdd:PRK12705 118 ELELEELEKQLdneLYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAE 175
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
998-1306 |
1.36e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.13 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 998 DSLLQENsrLQQTLESI--IAEKEQLKMDLKENIEMSvenQEELRilrdelKRQQEIAAQEKDHVTEKSEELSRAheRLA 1075
Cdd:PRK11281 58 DKLVQQD--LEQTLALLdkIDRQKEETEQLKQQLAQA---PAKLR------QAQAELEALKDDNDEETRETLSTL--SLR 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1076 EIEEKLKEKNQKLQETQQQLVSI--------------QEAMSEMQAKVTDLENLQNEFRNQALALERVETERLELAQKLH 1141
Cdd:PRK11281 125 QLESRLAQTLDQLQNAQNDLAEYnsqlvslqtqperaQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1142 ENYEKMESITKERNDLkeLQesfEIEKKQLKEyaremesaglqTKEQLNIAHANLKEYQEIIKELRGSISEKEA-QASST 1220
Cdd:PRK11281 205 NAQNDLQRKSLEGNTQ--LQ---DLLQKQRDY-----------LTARIQRLEHQLQLLQEAINSKRLTLSEKTVqEAQSQ 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1221 QDTGK--TNPASQGETPVPRE--QELLpdaeearASAEKGSELepVEEHSRTAHSL-----TTEGIEMEI------LALT 1285
Cdd:PRK11281 269 DEAARiqANPLVAQELEINLQlsQRLL-------KATEKLNTL--TQQNLRVKNWLdrltqSERNIKEQIsvlkgsLLLS 339
|
330 340
....*....|....*....|....*..
gi 1958755384 1286 KKLEESQ------KEISCLTKERSDLR 1306
Cdd:PRK11281 340 RILYQQQqalpsaDLIEGLADRIADLR 366
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1589-1815 |
1.37e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1589 LRETMDQMEQLK---EQLEAQnstLESIEIEK------LKLTQQLNEnlKEMTLVAKENDDLKIMDEALREERDQLRESL 1659
Cdd:COG1196 181 LEATEENLERLEdilGELERQ---LEPLERQAekaeryRELKEELKE--LEAELLLLKLRELEAELEELEAELEELEAEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1660 RQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSdmnmELERANTRLQEKVQELKAS----ELQLLKSKVE 1735
Cdd:COG1196 256 EELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA----RLEQDIARLEERRRELEERleelEEELAELEEE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1736 AGETKKQLKEQGLALSKIEMENLNLAQQIHQNLEEMKSISKERDDlkRMEEILRMEKDQLKDSLREAKFKAHQNYEETVQ 1815
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE--AEEELEELAEELLEALRAAAELAAQLEELEEAE 409
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
759-1732 |
1.54e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 759 MAHKDSRiQGLLEEIGNTKDDLAASQLSQRSSDEecqalksLHVELkHRQEEVLEESER-VKQELSQKT--QELAQKTAE 835
Cdd:PRK04863 275 MRHANER-RVHLEEALELRRELYTSRRQLAAEQY-------RLVEM-ARELAELNEAESdLEQDYQAASdhLNLVQTALR 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 836 GQEMLNQ----MEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQdtvn 911
Cdd:PRK04863 346 QQEKIERyqadLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQ---- 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 912 mNIDTQEQLLN----ALESLKQHQETINMLKMKATEEMsdhlpikgregssDEVEQKLDGIDEENLLAESAHTVVGSGED 987
Cdd:PRK04863 422 -ALERAKQLCGlpdlTADNAEDWLEEFQAKEQEATEEL-------------LSLEQKLSVAQAAHSQFEQAYQLVRKIAG 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 988 HGETEE-QRKIDSLLQENSRLQQTLESIiaekEQLKMDLKEnIEMSVENQEELRILRDELKRQQEiaaQEKDHVTEKSEE 1066
Cdd:PRK04863 488 EVSRSEaWDVARELLRRLREQRHLAEQL----QQLRMRLSE-LEQRLRQQQRAERLLAEFCKRLG---KNLDDEDELEQL 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1067 LSRAHERLAEIEEKLKEKNQKLQETQQQLVsiqeamsEMQAKVTDLENLQNEFRNQALALERVET---ERLELAQKLHE- 1142
Cdd:PRK04863 560 QEELEARLESLSESVSEARERRMALRQQLE-------QLQARIQRLAARAPAWLAAQDALARLREqsgEEFEDSQDVTEy 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1143 ---NYEKMESITKERNDLKElqesfeiEKKQLKEYAREMESAGLQTKEQLNiahaNLKEY--QEIIKELRGSISEKEA-- 1215
Cdd:PRK04863 633 mqqLLERERELTVERDELAA-------RKQALDEEIERLSQPGGSEDPRLN----ALAERfgGVLLSEIYDDVSLEDApy 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1216 ---------QASSTQDTGKTNPASQGETPVPREQELL---PDA-EEARASAEKGSELEPVEEHSRtahSLTTEGIEMEIL 1282
Cdd:PRK04863 702 fsalygparHAIVVPDLSDAAEQLAGLEDCPEDLYLIegdPDSfDDSVFSVEELEKAVVVKIADR---QWRYSRFPEVPL 778
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1283 ----ALTKKLEESQKEISCLTKERSDLRRTQEALQvecaQLKDDARRTLANHL------ETEEELSLARCCLKEQENKid 1352
Cdd:PRK04863 779 fgraAREKRIEQLRAEREELAERYATLSFDVQKLQ----RLHQAFSRFIGSHLavafeaDPEAELRQLNRRRVELERA-- 852
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1353 slivsLSQKEAELSSVRVQLEVTTGEL---------------ERKVQELCEKQEQLNIKETSEV-----QGKMSELDHIR 1412
Cdd:PRK04863 853 -----LADHESQEQQQRSQLEQAKEGLsalnrllprlnlladETLADRVEEIREQLDEAEEAKRfvqqhGNALAQLEPIV 927
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1413 ALLLTKDSALQSVESDRLRLNKQLEESQ-------------------EEIKILIKER---EELRRAQEALHVEREQQQES 1470
Cdd:PRK04863 928 SVLQSDPEQFEQLKQDYQQAQQTQRDAKqqafaltevvqrrahfsyeDAAEMLAKNSdlnEKLRQRLEQAEQERTRAREQ 1007
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1471 IKEISTRLQElqdkeyeylvmkslnetqgnkcedLNQQLEAQKSSLEkvemqnvNLTQRLNETLEEMKSVAKERDElrSV 1550
Cdd:PRK04863 1008 LRQAQAQLAQ------------------------YNQVLASLKSSYD-------AKRQMLQELKQELQDLGVPADS--GA 1054
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1551 EERLTADRDQLKKSLEETITKNQELQEkghQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKE 1630
Cdd:PRK04863 1055 EERARARRDELHARLSANRSRRNQLEK---QLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKDNGVE 1131
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1631 MTLVAKENDDLKimDEALREERDQLRESLRQTEASDLEKQEKLRIA------------HLDLKEHQEtiERLMGSVAkRT 1698
Cdd:PRK04863 1132 RRLHRRELAYLS--ADELRSMSDKALGALRLAVADNEHLRDVLRLSedpkrperkvqfYIAVYQHLR--ERIRQDII-RT 1206
|
1050 1060 1070
....*....|....*....|....*....|....
gi 1958755384 1699 EEVSDMNMELERANTRLQEkvqELKASELQLLKS 1732
Cdd:PRK04863 1207 DDPVEAIEQMEIELSRLTE---ELTSREQKLAIS 1237
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
496-943 |
1.54e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.90 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 496 EENLESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKEKNELEEFEFLEQR--EEKDQENELSSKVELLKEK-EDQIKEL 572
Cdd:PRK03918 247 LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKlsEFYEEYLDELREIEKRLSRlEEEINGI 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 573 QRYI-----DAQKSETTKTDLSYSSEATEDLKQAMRTLSDLDTVALDAKRESAFLRSENLE-LKERINELSDSCKQMENG 646
Cdd:PRK03918 327 EERIkeleeKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEkLEKELEELEKAKEEIEEE 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 647 IQMYQRQLEAKKQVQADLEK---ELQLA----------FQEISKLSALVDGKGLLSNLELE-KRITDLQKELNKEVEEKE 712
Cdd:PRK03918 407 ISKITARIGELKKEIKELKKaieELKKAkgkcpvcgreLTEEHRKELLEEYTAELKRIEKElKEIEEKERKLRKELRELE 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 713 TLQKEVHLLSELKSLPSEVETLRRELHE-KSEELCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSD 791
Cdd:PRK03918 487 KVLKKESELIKLKELAEQLKELEEKLKKyNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLD 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 792 EECQALKSLHVELKHRQEEVLEESERVKQELS---QKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLT 868
Cdd:PRK03918 567 ELEEELAELLKELEELGFESVEELEERLKELEpfyNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELR 646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 869 EKLQQ-----TLEEVRALTQEKNDLKQLQESLQTERDQLRSDIqDTVNMNIDTQEQLLNALESLKQHQETINMLKMKATE 943
Cdd:PRK03918 647 KELEElekkySEEEYEELREEYLELSRELAGLRAELEELEKRR-EEIKKTLEKLKEELEEREKAKKELEKLEKALERVEE 725
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1305-1751 |
1.63e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1305 LRRTQEALQVECAQlkddarRTLANHLETEEELSLARCCLKEQENKiDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQ 1384
Cdd:PRK04863 242 NRMTLEAIRVTQSD------RDLFKHLITESTNYVAADYMRHANER-RVHLEEALELRRELYTSRRQLAAEQYRLVEMAR 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1385 ELCEKQEQLNIKETsEVQGKMSELDHIRALLLTKDsALQSVESDRLRLNKQLEESQEEikilikeREELRRAQEALHVER 1464
Cdd:PRK04863 315 ELAELNEAESDLEQ-DYQAASDHLNLVQTALRQQE-KIERYQADLEELEERLEEQNEV-------VEEADEQQEENEARA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1465 EQQQESIKEISTRLQELQdKEYEYLVMKSLNETQG-NKCEDLNQQLEAQKSSLEKVEmqnvnltqrlnETLEEMKSVAKE 1543
Cdd:PRK04863 386 EAAEEEVDELKSQLADYQ-QALDVQQTRAIQYQQAvQALERAKQLCGLPDLTADNAE-----------DWLEEFQAKEQE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1544 R-DELRSVEERLT---ADRDQLKKSLE--ETITKNQELQEKGHQLSQVKADLRETMDQMEQLkEQLEAQNSTLEsieiEK 1617
Cdd:PRK04863 454 AtEELLSLEQKLSvaqAAHSQFEQAYQlvRKIAGEVSRSEAWDVARELLRRLREQRHLAEQL-QQLRMRLSELE----QR 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1618 LKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRiahLDLKEHQETIERLMG----- 1692
Cdd:PRK04863 529 LRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALR---QQLEQLQARIQRLAArapaw 605
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958755384 1693 -----SVAKRTEEVSDmnmELERANtRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALS 1751
Cdd:PRK04863 606 laaqdALARLREQSGE---EFEDSQ-DVTEYMQQLLERERELTVERDELAARKQALDEEIERLS 665
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
1451-1602 |
1.67e-03 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 43.82 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1451 EELRRAQEALhveRE--QQQESIKEISTRLQELQDKEYEYlvMKSLNETQGNKCEDLNQQLEAQKSSLEKvemqnvnltQ 1528
Cdd:pfam13779 489 RRLRAAQERL---SEalERGASDEEIAKLMQELREALDDY--MQALAEQAQQNPQDLQQPDDPNAQEMTQ---------Q 554
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755384 1529 RLNETLEEMKSVAKE--RDELRsveERLtadrDQLKKSLE--ETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQ 1602
Cdd:pfam13779 555 DLQRMLDRIEELARSgrRAEAQ---QML----SQLQQMLEnlQAGQPQQQQQQGQSEMQQAMDELGDLLREQQQLLDE 625
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
493-1348 |
1.80e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.88 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 493 LLSEENLESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKEKNELEEFEFLEQREEKDQENELSSK-VELLKEKEDQIKE 571
Cdd:TIGR00606 226 ITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKmEKVFQGTDEQLND 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 572 LQ-------RYIDAQKSETTKTDLSYSSEATEDLKQAMRTLSDLDTVALDAKRESAFLRSENLELKERINEL-------- 636
Cdd:TIGR00606 306 LYhnhqrtvREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLeldgferg 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 637 SDSCKQMENGIQMYQRQLEAK----KQVQADLEKELQLAFQEISKLSalVDGKGLLSNLELEKritdlqkelnkeveekE 712
Cdd:TIGR00606 386 PFSERQIKNFHTLVIERQEDEaktaAQLCADLQSKERLKQEQADEIR--DEKKGLGRTIELKK----------------E 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 713 TLQKEVHLLSELKSLPSEVETLRRELHEKSEELcvITTEREKlfsEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDE 792
Cdd:TIGR00606 448 ILEKKQEELKFVIKELQQLEGSSDRILELDQEL--RKAEREL---SKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQ 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 793 EcqalkslhVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQ 872
Cdd:TIGR00606 523 E--------MEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLA 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 873 QTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNiDTQEQLLNALESLKQHQETINMLKMKA----------T 942
Cdd:TIGR00606 595 KLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQ-DEESDLERLKEEIEKSSKQRAMLAGATavysqfitqlT 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 943 EEMSDHLPIKGREGSSD-EVEQKLDGIDEENLLA----ESAHTVVGSGEDHGET------EEQRKIDSLLQENSRLQQTL 1011
Cdd:TIGR00606 674 DENQSCCPVCQRVFQTEaELQEFISDLQSKLRLApdklKSTESELKKKEKRRDEmlglapGRQSIIDLKEKEIPELRNKL 753
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1012 ESIIAEKEQLKMDLKEN---IEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAH-----ERLAEIEEKLKE 1083
Cdd:TIGR00606 754 QKVNRDIQRLKNDIEEQetlLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQgsdldRTVQQVNQEKQE 833
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1084 KNQKLQETQQQLVSIQEAMSEMQAKVTDLENLQNEFRNQALALERVETERLELAQKLHENYEKMESITKERNDLKELQES 1163
Cdd:TIGR00606 834 KQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSP 913
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1164 FEIEKKQLKEYAREM----ESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKTNPASQGETPVPRE 1239
Cdd:TIGR00606 914 LETFLEKDQQEKEELisskETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQ 993
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1240 QELLPDAEEARASAEKGSELEpveehSRTAHSLTTEGIEMEILALTKKLEESQKEISclTKERSDLRRTQEALQVECAQL 1319
Cdd:TIGR00606 994 EKINEDMRLMRQDIDTQKIQE-----RWLQDNLTLRKRENELKEVEEELKQHLKEMG--QMQVLQMKQEHQKLEENIDLI 1066
|
890 900
....*....|....*....|....*....
gi 1958755384 1320 KDDARRTLANHLETEEELSLARCCLKEQE 1348
Cdd:TIGR00606 1067 KRNHVLALGRQKGYEKEIKHFKKELREPQ 1095
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
991-1522 |
1.88e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.91 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 991 TEEQRKIDSLLQENSRLQqtLESIIAEKEQL-KMDLKENIEMSVENQEELRILRDELKRQQEiAAQEKDHVTEKSEELSR 1069
Cdd:COG5022 909 IELKKSLSSDLIENLEFK--TELIARLKKLLnNIDLEEGPSIEYVKLPELNKLHEVESKLKE-TSEEYEDLLKKSTILVR 985
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1070 aheRLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLENLQN---------EFRNQALALERVETERLELAQKL 1140
Cdd:COG5022 986 ---EGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSaskiissesTELSILKPLQKLKGLLLLENNQL 1062
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1141 HENYEKMeSITKERNDLKELQESF---------EIEKKQLKEYARemESAGLQTKEQLNIAHA-NLKEYQEIIKELRGSI 1210
Cdd:COG5022 1063 QARYKAL-KLRRENSLLDDKQLYQlestenllkTINVKDLEVTNR--NLVKPANVLQFIVAQMiKLNLLQEISKFLSQLV 1139
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1211 SEKEaqaSSTQDTGKTNPASQGETPVPREQELLPDAEEARASAEKGSELEPVEEHSRTAHSLTTEgIEMEILALTKK--- 1287
Cdd:COG5022 1140 NTLE---PVFQKLSVLQLELDGLFWEANLEALPSPPPFAALSEKRLYQSALYDEKSKLSSSEVND-LKNELIALFSKifs 1215
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1288 LEESQKEISCLTKERSDLRRTQEALQvecaqlkddarrtlanhleTEEELSLARCClkEQENKIDSLIVSLSQKEAELSS 1367
Cdd:COG5022 1216 GWPRGDKLKKLISEGWVPTEYSTSLK-------------------GFNNLNKKFDT--PASMSNEKLLSLLNSIDNLLSS 1274
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1368 VRVQLEVTTGELERKVQELCEKQEQLNIKETSEVQGKmseldhiRALLLTKDSALQS---VESDRLRLNKQLEESQEEIK 1444
Cdd:COG5022 1275 YKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWK-------SATEVNYNSEELDdwcREFEISDVDEELEELIQAVK 1347
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755384 1445 ILIKEREELRRAQEALHVEREQQQEsikEISTRLQELQDKEYEYLVMKSLNEtqgnKCEDLNQQLEAQKSSLEKVEMQ 1522
Cdd:COG5022 1348 VLQLLKDDLNKLDELLDACYSLNPA---EIQNLKSRYDPADKENNLPKEILK----KIEALLIKQELQLSLEGKDETE 1418
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
687-1054 |
1.91e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 687 LLSNLELEKRITDLQKELNKEVEEKETLQKEVHLLSELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRI 766
Cdd:pfam17380 274 LLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERI 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 767 QglLEEigntkddlaASQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQelaQKTAEGQEMLNQMEEL 846
Cdd:pfam17380 354 R--QEE---------RKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARK---VKILEEERQRKIQQQK 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 847 REKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNdlKQLQESLQTERDQLRSDIQdtvnmnidtqeqllnaLES 926
Cdd:pfam17380 420 VEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQ--QQVERLRQQEEERKRKKLE----------------LEK 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 927 LKQHQETINMLKMKATEEmsdhlPIKGREGSSDEVEQKLDGIDEEnllAESAHTVVGSGEDHGETEEQRKIDSLLQENSR 1006
Cdd:pfam17380 482 EKRDRKRAEEQRRKILEK-----ELEERKQAMIEEERKRKLLEKE---MEERQKAIYEEERRREAEEERRKQQEMEERRR 553
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1958755384 1007 LQQTLESIIAEKEQLKMDLKEniemsvenQEELRILRDELKRQQEIAA 1054
Cdd:pfam17380 554 IQEQMRKATEERSRLEAMERE--------REMMRQIVESEKARAEYEA 593
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1400-1569 |
1.91e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1400 EVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEIkilikerEELRRAQEALHVEREQQQESIKEISTRLQ 1479
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTEL-------EDLEKEIKRLELEIEEVEARIKKYEEQLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1480 ELQD-KEYEYLvMKSLnETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERD----ELRSVEERL 1554
Cdd:COG1579 84 NVRNnKEYEAL-QKEI-ESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDeelaELEAELEEL 161
|
170
....*....|....*
gi 1958755384 1555 TADRDQLKKSLEETI 1569
Cdd:COG1579 162 EAEREELAAKIPPEL 176
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
478-1092 |
1.98e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 1.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 478 TLEPLAEAEWSSATALLSEENLESELTSLNTQynNLVLDYEQLRRENEDLKLKLKEKNELEEFEFLEQREEKDQENELss 557
Cdd:COG4913 253 LLEPIRELAERYAAARERLAELEYLRAALRLW--FAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDEL-- 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 558 KVELLKEKEDQIKELQRYIDAqksettktdlsysseATEDLKQAMRTLSDLDTVALDAKRESAFLRSENLELKERINELS 637
Cdd:COG4913 329 EAQIRGNGGDRLEQLEREIER---------------LERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 638 DSCKQMENGIQMYQRQLEAKKQvqaDLEKELQLAFQEISKLSAlvdgkgllSNLELEKRITDLQKELNKEVEEKETlqkE 717
Cdd:COG4913 394 EALEEELEALEEALAEAEAALR---DLRRELRELEAEIASLER--------RKSNIPARLLALRDALAEALGLDEA---E 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 718 VHLLSELKSLPSE-------VE----TLRREL----------------------------HEKSEELCVITTEREKLFSE 758
Cdd:COG4913 460 LPFVGELIEVRPEeerwrgaIErvlgGFALTLlvppehyaaalrwvnrlhlrgrlvyervRTGLPDPERPRLDPDSLAGK 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 759 MAHKDSRIQGLLE-EIGNTKDDL---AASQLSQ--RSSDEECQ--ALKSLHV---ELKHRQEEVLEESERVK-QELSQKT 826
Cdd:COG4913 540 LDFKPHPFRAWLEaELGRRFDYVcvdSPEELRRhpRAITRAGQvkGNGTRHEkddRRRIRSRYVLGFDNRAKlAALEAEL 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 827 QELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEK----EKNL--LTEKLQQTLEEVRALTQEKNDLKQLQ---ESLQT 897
Cdd:COG4913 620 AELEEELAEAEERLEALEAELDALQERREALQRLAEyswdEIDVasAEREIAELEAELERLDASSDDLAALEeqlEELEA 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 898 ERDQLRSDIQDTvnmnIDTQEQLLNALESLKQHQEtinmlkmkATEEMSDHLPIKGREGSSDEVEQKLDGIDEENLLAES 977
Cdd:COG4913 700 ELEELEEELDEL----KGEIGRLEKELEQAEEELD--------ELQDRLEAAEDLARLELRALLEERFAAALGDAVEREL 767
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 978 AHTVvgsgedhgeteeQRKIDSLLQENSRLQQTLESIIAE-KEQLKMDLKEnIEMSVENQEELRILRDELKR------QQ 1050
Cdd:COG4913 768 RENL------------EERIDALRARLNRAEEELERAMRAfNREWPAETAD-LDADLESLPEYLALLDRLEEdglpeyEE 834
|
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 1958755384 1051 EIAAQEKDHVTEKSEELSRAHER-LAEIEEKLKEKNQKLQETQ 1092
Cdd:COG4913 835 RFKELLNENSIEFVADLLSKLRRaIREIKERIDPLNDSLKRIP 877
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
996-1109 |
2.10e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 43.53 E-value: 2.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 996 KIDSLLQENSRLQQTLESIIAEKEQLKMDLKENiemsveNQEELRILRDELKR-QQEIAAQEKDHVTEKSeelsrAHERL 1074
Cdd:COG0542 405 EIDSKPEELDELERRLEQLEIEKEALKKEQDEA------SFERLAELRDELAElEEELEALKARWEAEKE-----LIEEI 473
|
90 100 110
....*....|....*....|....*....|....*
gi 1958755384 1075 AEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKV 1109
Cdd:COG0542 474 QELKEELEQRYGKIPELEKELAELEEELAELAPLL 508
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1488-1613 |
2.25e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.23 E-value: 2.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1488 YLVMKSLNETQGNKCEDLNQQL--EAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKER-DELRSVEERLTADRDQLKKS 1564
Cdd:PRK12704 22 YFVRKKIAEAKIKEAEEEAKRIleEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERrNELQKLEKRLLQKEENLDRK 101
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1958755384 1565 LEETITKNQELQEKGHQLSQVKADLREtmdQMEQLKEQLEAQNSTLESI 1613
Cdd:PRK12704 102 LELLEKREEELEKKEKELEQKQQELEK---KEEELEELIEEQLQELERI 147
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
1462-1664 |
2.33e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 42.76 E-value: 2.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1462 VEREQQQESikeisTRLQELQDKEYEY-LVMKSLNETQgNKCEDLNQQLEAQKSSLEKVEM----QNVNLTQRLNETLEE 1536
Cdd:PRK11637 63 VRQQQQQRA-----SLLAQLKKQEEAIsQASRKLRETQ-NTLNQLNKQIDELNASIAKLEQqqaaQERLLAAQLDAAFRQ 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1537 MKSVAKE---RDELRSVEERLTADRDQLKKSLEETITknqELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESI 1613
Cdd:PRK11637 137 GEHTGLQlilSGEESQRGERILAYFGYLNQARQETIA---ELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQA 213
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958755384 1614 EIEKLKLTQQLNENLKEmtlvakendDLKIMDEaLREERDQLRESLRQTEA 1664
Cdd:PRK11637 214 RNERKKTLTGLESSLQK---------DQQQLSE-LRANESRLRDSIARAER 254
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
632-1139 |
2.35e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 43.27 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 632 RINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSALVDGKGLLSNLELEKRITDLQKELNKEVEEK 711
Cdd:pfam10174 193 QLGHLEVLLDQKEKENIHLREELHRRNQLQPDPAKTKALQTVIEMKDTKISSLERNIRDLEDEVQMLKTNGLLHTEDREE 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 712 ETLQKEVHLlSELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLleeigntKDDLAASQLSQRSSD 791
Cdd:pfam10174 273 EIKQMEVYK-SHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVL-------KESLTAKEQRAAILQ 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 792 EECQALKsLHVELKhrqEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEE----LREKLERRDSSLQSAEKEKNLL 867
Cdd:pfam10174 345 TEVDALR-LRLEEK---ESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERkinvLQKKIENLQEQLRDKDKQLAGL 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 868 TEKLQQ-------------TLEEvrALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLlNALESLKQHQET- 933
Cdd:pfam10174 421 KERVKSlqtdssntdtaltTLEE--ALSEKERIIERLKEQREREDRERLEELESLKKENKDLKEKV-SALQPELTEKESs 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 934 INMLKMKATEEMSDHLPIKGREGSSD-EVEQKLDGIDEENLLAESAHTVVGSGEDHGETEEQ-----RKIDSLLQENSRL 1007
Cdd:pfam10174 498 LIDLKEHASSLASSGLKKDSKLKSLEiAVEQKKEECSKLENQLKKAHNAEEAVRTNPEINDRirlleQEVARYKEESGKA 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1008 QQTLE---SIIAEKEQLKMDLKENIE---------MSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHER-L 1074
Cdd:pfam10174 578 QAEVErllGILREVENEKNDKDKKIAelesltlrqMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLqL 657
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958755384 1075 AEIEEKLKEKNQKLQETQQQLVSIQEAMSEmqaKVTDLENLQNEFRNQalaLErvetERLELAQK 1139
Cdd:pfam10174 658 EELMGALEKTRQELDATKARLSSTQQSLAE---KDGHLTNLRAERRKQ---LE----EILEMKQE 712
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1505-1674 |
2.42e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 2.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1505 LNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERD----ELRSVEERLTADRDQLKksleeTITKNQELQEKGH 1580
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKrlelEIEEVEARIKKYEEQLG-----NVRNNKEYEALQK 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1581 QLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEmtlVAKENDDLKIMDEALREERDQLRESLr 1660
Cdd:COG1579 97 EIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAE---LDEELAELEAELEELEAEREELAAKI- 172
|
170
....*....|....
gi 1958755384 1661 qtEASDLEKQEKLR 1674
Cdd:COG1579 173 --PPELLALYERIR 184
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
803-931 |
2.60e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 43.28 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 803 ELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKL-ERRDSSLQSAEKEKNlltEKLQQTLEEVRAL 881
Cdd:PRK00409 513 EDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLqEEEDKLLEEAEKEAQ---QAIKEAKKEADEI 589
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1958755384 882 TQEKNDLKQLQESLQTERDQlrsdiqdtvnmnIDTQEQLLNALESLKQHQ 931
Cdd:PRK00409 590 IKELRQLQKGGYASVKAHEL------------IEARKRLNKANEKKEKKK 627
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
1426-1783 |
2.75e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.81 E-value: 2.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1426 ESDRLRLNKQLEESQEEIKILIKERE----ELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEylvmkslnetqgnK 1501
Cdd:pfam05557 1 RAELIESKARLSQLQNEKKQMELEHKrariELEKKASALKRQLDRESDRNQELQKRIRLLEKREAE-------------A 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1502 CEDLNQQLEAQKSSLEKVEMQNVNLTqrlnetlEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQ 1581
Cdd:pfam05557 68 EEALREQAELNRLKKKYLEALNKKLN-------EKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQER 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1582 LSQvkadLRETMDQMEQLKEQLEAQNSTLESIE--IEKLKLTQQLNENLKEMTLVAKEN----DDLKIMDEALREERDQL 1655
Cdd:pfam05557 141 LDL----LKAKASEAEQLRQNLEKQQSSLAEAEqrIKELEFEIQSQEQDSEIVKNSKSElariPELEKELERLREHNKHL 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1656 RESLRQTEAsdlekqeklriahldLKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKV-------------QEL 1722
Cdd:pfam05557 217 NENIENKLL---------------LKEEVEDLKRKLEREEKYREEAATLELEKEKLEQELQSWVklaqdtglnlrspEDL 281
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958755384 1723 KASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLNLAQQIHQNLEEMKSISKERDDLKR 1783
Cdd:pfam05557 282 SRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVR 342
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1137-1364 |
2.75e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 2.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1137 AQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQ 1216
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1217 ASSTQDT-GKTNPASQGETPVPREQELLPDAEEARAsaekgselepveEHSRTAHSLTTEGIEMEILALTKKLEESQKEI 1295
Cdd:COG4942 99 LEAQKEElAELLRALYRLGRQPPLALLLSPEDFLDA------------VRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958755384 1296 SCLTKERSDLRRTQEALQVECAQL---KDDARRTLANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAE 1364
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALealKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
342-972 |
2.89e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.14 E-value: 2.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 342 EALLKRYRREIVDLKKQLEEVNTKTRAQEIEKDQLAQlldekdllQKVQDEKIQNLKRMLVTSSSIALQQE-LEIKKKrr 420
Cdd:COG5022 845 EVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAE--------RQLQELKIDVKSISSLKLVNLELESEiIELKKS-- 914
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 421 vtwcfgkmKDSNYVKEFKIPTNITTR------TRKTSVTPLRE----NSLMKL--GESALSWESEVFDNTLEPLAEAEWS 488
Cdd:COG5022 915 --------LSSDLIENLEFKTELIARlkkllnNIDLEEGPSIEyvklPELNKLheVESKLKETSEEYEDLLKKSTILVRE 986
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 489 SATALLSEENLESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKEKNELEEFEFLEQR--EEKDQENELSSKVELLKEKE 566
Cdd:COG5022 987 GNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSIlkPLQKLKGLLLLENNQLQARY 1066
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 567 DQI---KELQRYIDAQKSETTKTDlSYSSEATEDLKQAmrtlsdLDTVALDAKRESAFLRSENLELKErINELSDSCKQM 643
Cdd:COG5022 1067 KALklrRENSLLDDKQLYQLESTE-NLLKTINVKDLEV------TNRNLVKPANVLQFIVAQMIKLNL-LQEISKFLSQL 1138
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 644 ENGIQMYqrqleakkqvqadlekelqlaFQEISKLSALVDGKGLLSNLElekriTDLQKELNKEVEEKETLQkeVHLLSE 723
Cdd:COG5022 1139 VNTLEPV---------------------FQKLSVLQLELDGLFWEANLE-----ALPSPPPFAALSEKRLYQ--SALYDE 1190
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 724 L-KSLPSEVETLRRELHE---KSEELCVITTEREKLFSEMAHKdSRIQGLLEEIGNTKDDLAASQlsQRSSDEECQALKS 799
Cdd:COG5022 1191 KsKLSSSEVNDLKNELIAlfsKIFSGWPRGDKLKKLISEGWVP-TEYSTSLKGFNNLNKKFDTPA--SMSNEKLLSLLNS 1267
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 800 LHVELKHRQEEVLEESERVKQELSQKTQELAQktaEGQEMLNQMEELREKLERRDSSLQS---AEKEKNLLTEKLQQTLE 876
Cdd:COG5022 1268 IDNLLSSYKLEEEVLPATINSLLQYINVGLFN---ALRTKASSLRWKSATEVNYNSEELDdwcREFEISDVDEELEELIQ 1344
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 877 EVRALTQEKNDLKQLQESLQTERDQLRSDIQdtvnmNIDTQEQLLNALESL-KQHQETINMLKMKATEEMSDHLPIKGRE 955
Cdd:COG5022 1345 AVKVLQLLKDDLNKLDELLDACYSLNPAEIQ-----NLKSRYDPADKENNLpKEILKKIEALLIKQELQLSLEGKDETEV 1419
|
650
....*....|....*..
gi 1958755384 956 GSSDEVEQKLDGIDEEN 972
Cdd:COG5022 1420 HLSEIFSEEKSLISLDR 1436
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1539-1803 |
3.17e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1539 SVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKgHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKL 1618
Cdd:COG3206 165 NLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQK-NGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLA 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1619 KLTQQLNENLKEMTLVAKenddlkimDEALREERDQLREsLRQTEAsdlEKQEKLRIAHLDLKEHQETIERLMGSVAKRT 1698
Cdd:COG3206 244 ALRAQLGSGPDALPELLQ--------SPVIQQLRAQLAE-LEAELA---ELSARYTPNHPDVIALRAQIAALRAQLQQEA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1699 EEVSDmnmELERANTRLQEKVQELKASElqllkskveagetkkqlkeqglalskiemenlnlaQQIHQNLEEMKSISKER 1778
Cdd:COG3206 312 QRILA---SLEAELEALQAREASLQAQL-----------------------------------AQLEARLAELPELEAEL 353
|
250 260
....*....|....*....|....*
gi 1958755384 1779 DDLKRMEEILRMEKDQLKDSLREAK 1803
Cdd:COG3206 354 RRLEREVEVARELYESLLQRLEEAR 378
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1424-1655 |
3.32e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.69 E-value: 3.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1424 SVESDRLRLNK-QLEESQEEIKILikeREELRRAQEALHVEREQQQESIKEISTRLQELQDKeYEYLV-----MKSLNET 1497
Cdd:PHA02562 163 SVLSEMDKLNKdKIRELNQQIQTL---DMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNK-YDELVeeaktIKAEIEE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1498 QGNKCEDLNQQLEAQKSSLEKvemqnvnLTQRLNETLEEMKSVAKE-------------RDELRSVEERLTADRDQLK-- 1562
Cdd:PHA02562 239 LTDELLNLVMDIEDPSAALNK-------LNTAAAKIKSKIEQFQKVikmyekggvcptcTQQISEGPDRITKIKDKLKel 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1563 -KSLEETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDL 1641
Cdd:PHA02562 312 qHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKI 391
|
250
....*....|....
gi 1958755384 1642 KIMDEALREERDQL 1655
Cdd:PHA02562 392 VKTKSELVKEKYHR 405
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
753-1115 |
3.34e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 42.82 E-value: 3.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 753 EKLFSEMAHKDSRIQGLLEEIGNTKD--DLAASQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQElSQKTQELA 830
Cdd:pfam09731 44 EEVVLYALGEDPPLAPKPKTFRPLQPsvVSAVTGESKEPKEEKKQVKIPRQSGVSSEVAEEEKEATKDAAE-AKAQLPKS 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 831 QKTAEGQEMLNQMEELrEKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRAlTQEKNDLKQLQESLQTERDQLRSDIQDTV 910
Cdd:pfam09731 123 EQEKEKALEEVLKEAI-SKAESATAVAKEAKDDAIQAVKAHTDSLKEASD-TAEISREKATDSALQKAEALAEKLKEVIN 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 911 NMNIDTQEQLLNALESLKQ--HQETINMLKMKATEEMSDHLP-----IKGREGSSDEV-EQKLDGI---------DEENL 973
Cdd:pfam09731 201 LAKQSEEEAAPPLLDAAPEtpPKLPEHLDNVEEKVEKAQSLAklvdqYKELVASERIVfQQELVSIfpdiipvlkEDNLL 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 974 LAESAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQE-ELRI----------- 1041
Cdd:pfam09731 281 SNDDLNSLIAHAHREIDQLSKKLAELKKREEKHIERALEKQKEELDKLAEELSARLEEVRAADEaQLRLeferereeire 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1042 -----LRDELKRQQEIAAQE-KDHVTEKSEELSRAHERlaEIEEKLkEKNQKLQetqqqlvsiQEAMSEMQAKVTDLENL 1115
Cdd:pfam09731 361 syeekLRTELERQAEAHEEHlKDVLVEQEIELQREFLQ--DIKEKV-EEERAGR---------LLKLNELLANLKGLEKA 428
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1410-1808 |
3.55e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.90 E-value: 3.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1410 HIRALLLTKDSALQSVESDRLRLNKQLEESQEEIKILIKE-REELRRAQEALhverEQQQESIKEISTRLQELQDKEYEY 1488
Cdd:pfam12128 266 GYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDElNGELSAADAAV----AKDRSELEALEDQHGAFLDADIET 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1489 LVMKSLNETQ-GNKCEDLNQQLEAQKSSLEKVEMQnvnlTQRLnetleEMKSVAKERDELRSVEERLTADRDQLKKSLEE 1567
Cdd:pfam12128 342 AAADQEQLPSwQSELENLEERLKALTGKHQDVTAK----YNRR-----RSKIKEQNNRDIAGIKDKLAKIREARDRQLAV 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1568 TITKNQEL-QEKGHQLSQVKADLREtmdQMEQLKEQLEAQNSTLESIEIEKLKLTQQ------LNENLKEMTLVAKENDD 1640
Cdd:pfam12128 413 AEDDLQALeSELREQLEAGKLEFNE---EEYRLKSRLGELKLRLNQATATPELLLQLenfderIERAREEQEAANAEVER 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1641 LKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAH--LDLKEH-------------QETIERLM-------------- 1691
Cdd:pfam12128 490 LQSELRQARKRRDQASEALRQASRRLEERQSALDELElqLFPQAGtllhflrkeapdwEQSIGKVIspellhrtdldpev 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1692 -GSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLNLAQQIhqnleE 1770
Cdd:pfam12128 570 wDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETF-----A 644
|
410 420 430
....*....|....*....|....*....|....*...
gi 1958755384 1771 MKSISKERDDLKRMEEILRMEKDQLKDSLREAKFKAHQ 1808
Cdd:pfam12128 645 RTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANE 682
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
806-944 |
3.75e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 3.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 806 HRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLqsaEKEKNLLTEKLQQtleevraLTQEK 885
Cdd:PRK12704 54 IKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELL---EKREEELEKKEKE-------LEQKQ 123
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958755384 886 NDLKQLQESLQTERDQLRSDIQDTVNMNID-TQEQLLNALESLKQHQ--ETINMLKMKATEE 944
Cdd:PRK12704 124 QELEKKEEELEELIEEQLQELERISGLTAEeAKEILLEKVEEEARHEaaVLIKEIEEEAKEE 185
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
485-666 |
3.77e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 42.32 E-value: 3.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 485 AEWSSATALLSEENL----ESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKEKNELEEFEFLeQREEKDQENELSSK-V 559
Cdd:pfam05667 315 ATSSPPTKVETEEELqqqrEEELEELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKE-QNEELEKQYKVKKKtL 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 560 ELLKEKEDQIKELQRYIDAqkSETTKTDLSYSSEAT-EDLKQAMRTLSDL-DTVALDAKRESAFLRsenlELKERINELS 637
Cdd:pfam05667 394 DLLPDAEENIAKLQALVDA--SAQRLVELAGQWEKHrVPLIEEYRALKEAkSNKEDESQRKLEEIK----ELREKIKEVA 467
|
170 180
....*....|....*....|....*....
gi 1958755384 638 DSCKQMEngiqmyqrqlEAKKQVQADLEK 666
Cdd:pfam05667 468 EEAKQKE----------ELYKQLVAEYER 486
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
721-1030 |
4.00e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.20 E-value: 4.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 721 LSELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQALKSL 800
Cdd:COG4372 37 LFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 801 HVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEK-NLLTEKLQQTLEEVR 879
Cdd:COG4372 117 LEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEaEQALDELLKEANRNA 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 880 ALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKMKATEEMSDHLPIKGREGSSD 959
Cdd:COG4372 197 EKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEE 276
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958755384 960 EVEQKLDGIDEENLLAESAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIE 1030
Cdd:COG4372 277 ELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLL 347
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
997-1418 |
4.82e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 42.25 E-value: 4.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 997 IDSLLQENSRLQQTLESIIAEKEQLKMDLKEniEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAE 1076
Cdd:COG5185 149 IEASYGEVETGIIKDIFGKLTQELNQNLKKL--EIFGLTLGLLKGISELKKAEPSGTVNSIKESETGNLGSESTLLEKAK 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1077 IEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLENLQNE-FRNQALALERVETERLELAQKLHENYEKMESITKERN 1155
Cdd:COG5185 227 EIINIEEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEkLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSID 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1156 DLKELQESFEI-----EKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKTNpas 1230
Cdd:COG5185 307 IKKATESLEEQlaaaeAEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSKSSEELDSFK--- 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1231 qgetpVPREQELLPDAEEARASAEKGSELEPVEEHSRTAHSLTTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQE 1310
Cdd:COG5185 384 -----DTIESTKESLDEIPQNQRGYAQEILATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREAD 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1311 ALQVECAQLKDD--ARRTLANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCE 1388
Cdd:COG5185 459 EESQSRLEEAYDeiNRSVRSKKEDLNEELTQIESRVSTLKATLEKLRAKLERQLEGVRSKLDQVAESLKDFMRARGYAHI 538
|
410 420 430
....*....|....*....|....*....|
gi 1958755384 1389 KQEQLNIKETSEVQGKMSELDHIRALLLTK 1418
Cdd:COG5185 539 LALENLIPASELIQASNAKTDGQAANLRTA 568
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1064-1310 |
5.19e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.81 E-value: 5.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1064 SEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQakvTDLENLQNEFRNQALALERVETERLELAQKLHEN 1143
Cdd:COG4372 30 SEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQAR---SELEQLEEELEELNEQLQAAQAELAQAQEELESL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1144 YEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDT 1223
Cdd:COG4372 107 QEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALD 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1224 GKTNPASQGE--TPVPREQELLPDAEEARASAEKGSELEPVEEHSRTAHSLTTEGIEMEILALTKKLEESQKEISCLTKE 1301
Cdd:COG4372 187 ELLKEANRNAekEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELA 266
|
....*....
gi 1958755384 1302 RSDLRRTQE 1310
Cdd:COG4372 267 ILVEKDTEE 275
|
|
| OmpH |
smart00935 |
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH ... |
809-911 |
5.68e-03 |
|
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.
Pssm-ID: 214922 [Multi-domain] Cd Length: 140 Bit Score: 39.49 E-value: 5.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 809 EEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKnlLTEKLQQTLEEVRALTQekndl 888
Cdd:smart00935 7 QKILQESPAGKAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREK--KEKELQKKVQEFQRKQQ----- 79
|
90 100
....*....|....*....|...
gi 1958755384 889 kQLQESLQTERDQLRSDIQDTVN 911
Cdd:smart00935 80 -KLQQDLQKRQQEELQKILDKIN 101
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1538-1803 |
5.90e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.43 E-value: 5.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1538 KSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEK 1617
Cdd:COG4372 31 EQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1618 LKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAKR 1697
Cdd:COG4372 111 EELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLK 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1698 TEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLNLAQQIHQNLEEMKSISKE 1777
Cdd:COG4372 191 EANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVE 270
|
250 260
....*....|....*....|....*.
gi 1958755384 1778 RDDLKRMEEILRMEKDQLKDSLREAK 1803
Cdd:COG4372 271 KDTEEEELEIAALELEALEEAALELK 296
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
734-890 |
6.54e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.10 E-value: 6.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 734 LRRELHEKSEELCVITTEreklFSEMAHKDSriqglLEEIGNT--KDDLAASQLSQRSSDEECQALKSLHVELKHRQEEV 811
Cdd:PRK09039 44 LSREISGKDSALDRLNSQ----IAELADLLS-----LERQGNQdlQDSVANLRASLSAAEAERSRLQALLAELAGAGAAA 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 812 LEESERVKQELSQKTQELAQKTAEgQEMLN-QMEELREKLERRDSSLQSAEK---EKNLLTEKLQQTLEEvrALTQEKND 887
Cdd:PRK09039 115 EGRAGELAQELDSEKQVSARALAQ-VELLNqQIAALRRQLAALEAALDASEKrdrESQAKIADLGRRLNV--ALAQRVQE 191
|
...
gi 1958755384 888 LKQ 890
Cdd:PRK09039 192 LNR 194
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
998-1157 |
6.91e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 40.90 E-value: 6.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 998 DSLLQENSRLQQTLESIIAEKEQLKMDLKE-----NIEMSVENQEELRILRDELKRQQEIAAQEKDHV-----------T 1061
Cdd:pfam09787 3 ESAKQELADYKQKAARILQSKEKLIASLKEgsgveGLDSSTALTLELEELRQERDLLREEIQKLRGQIqqlrtelqeleA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1062 EKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEM-----------QAKVTDLENLQNEFRNQALALERVE 1130
Cdd:pfam09787 83 QQQEEAESSREQLQELEEQLATERSARREAEAELERLQEELRYLeeelrrskatlQSRIKDREAEIEKLRNQLTSKSQSS 162
|
170 180 190
....*....|....*....|....*....|....
gi 1958755384 1131 TERLELAQKLHENYEKM-------ESITKERNDL 1157
Cdd:pfam09787 163 SSQSELENRLHQLTETLiqkqtmlEALSTEKNSL 196
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
511-938 |
6.94e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.88 E-value: 6.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 511 NNLVLDYEQLRRENEDLKLKLKEKNELEEFEFLEQREEKDQENELSSKVELLKEKEDQIKELQRYIDAQKS-ETTKTDLS 589
Cdd:pfam02463 573 LPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAkESGLRKGV 652
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 590 YSSEATEDLKQAMRTLSDLDTVALDAKRESAFLRSENLELKERINELSDSCKQM-------ENGIQMYQRQLEAKKQVQA 662
Cdd:pfam02463 653 SLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQrekeelkKLKLEAEELLADRVQEAQD 732
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 663 DLEKELQLAFQEISKLSALVDGKGLLSNLELEKRITDLQKELNKEVEEKETLQKEVHLLSELKSLPSEVETLRRELHEKS 742
Cdd:pfam02463 733 KINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKE 812
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 743 EELCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQEL 822
Cdd:pfam02463 813 EAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKE 892
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 823 SQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQL 902
Cdd:pfam02463 893 EKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEEL 972
|
410 420 430
....*....|....*....|....*....|....*.
gi 1958755384 903 RSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLK 938
Cdd:pfam02463 973 GKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLI 1008
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
628-902 |
7.01e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 7.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 628 ELKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAfqeisklsalvdgkGLLSNLELEKRITDLQKELNKE 707
Cdd:COG3096 840 ALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQA--------------NLLADETLADRLEELREELDAA 905
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 708 VEEK-------ETLQKEVHLLSELKSLPSEVETLRRELHEKSEELcviTTEREKLFSemahkdsriqglLEEIGNTKDDL 780
Cdd:COG3096 906 QEAQafiqqhgKALAQLEPLVAVLQSDPEQFEQLQADYLQAKEQQ---RRLKQQIFA------------LSEVVQRRPHF 970
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 781 ----AASQLSQRSSDEEcqalkSLHVELKHRQEEVLEESERVKQ---ELSQKTQELAQ-------KTAEGQEMLNQMEEL 846
Cdd:COG3096 971 syedAVGLLGENSDLNE-----KLRARLEQAEEARREAREQLRQaqaQYSQYNQVLASlkssrdaKQQTLQELEQELEEL 1045
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755384 847 ------------REKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEkndLKQLQESLQTERDQL 902
Cdd:COG3096 1046 gvqadaeaeeraRIRRDELHEELSQNRSRRSQLEKQLTRCEAEMDSLQKR---LRKAERDYKQEREQV 1110
|
|
| CHASE3 |
COG5278 |
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms]; |
803-1205 |
7.26e-03 |
|
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];
Pssm-ID: 444089 [Multi-domain] Cd Length: 530 Bit Score: 41.43 E-value: 7.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 803 ELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALT 882
Cdd:COG5278 111 ELEALIDQWLAELEQVIALRRAGGLEAALALVRSGEGKALMDEIRARLLLLALALAALLLAAAALLLLLLALAALLALAE 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 883 QEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKMKATEEMSDHLPIKGREGSSDEVE 962
Cdd:COG5278 191 LLLLALARALAALLLLLLLEAELAAAAALLAAAAALAALAALELLAALALALALLLAALLLALLAALALAALLAAALLAL 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 963 QKLDGIDEENLLAESAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEmsVENQEELRIL 1042
Cdd:COG5278 271 AALLLALAAAAALAAAAALELAAAEALALAELELELLLAAAAAAAAAAAAAAAALAALLALALATALA--AAAAALALLA 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1043 RDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQAKVTDLENLQNEFRNQ 1122
Cdd:COG5278 349 ALLAEAAAAAAEEAEAAAEAAAAALAGLAEVEAEGAAEAVELEVLAIAAAAAAAAAEAAAAAAAAAAASAAEALELAEAL 428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1123 ALALERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEI 1202
Cdd:COG5278 429 AEALALAEEEALALAAASSELAEAGAALALAAAEALAEELAAVAALAALAAAAAALAEAEAAAALAAAAALSLALALAAL 508
|
...
gi 1958755384 1203 IKE 1205
Cdd:COG5278 509 LLA 511
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
829-1216 |
7.36e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 41.58 E-value: 7.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 829 LAQKTAEGQEMLNQMEELREKLERR----DSSLQSAEKEKNLLTEKLQQTLEEVrALTQEKNDLKQLQESLQTERDQLRS 904
Cdd:pfam13166 87 LGEESIEIQEKIAKLKKEIKDHEEKldaaEANLQKLDKEKEKLEADFLDECWKK-IKRKKNSALSEALNGFKYEANFKSR 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 905 DIQDTVNMNIDTQEQLLnaLESLKQHQETINmlkmkaTEEMSDHLPIkgREGSSDeveqkLDGIDEENLLAESahtVVGS 984
Cdd:pfam13166 166 LLREIEKDNFNAGVLLS--DEDRKAALATVF------SDNKPEIAPL--TFNVID-----FDALEKAEILIQK---VIGK 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 985 GEDHGETEEQRKIDSLLQENSRL-----------QQTLESIIAEKeqlkmdLKENIEMSVEN-QEELRILRDELKRQQEI 1052
Cdd:pfam13166 228 SSAIEELIKNPDLADWVEQGLELhkahldtcpfcGQPLPAERKAA------LEAHFDDEFTEfQNRLQKLIEKVESAISS 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1053 AAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQETQQQLvsiqEAMSEMQAKVTDLENLQNEFRNQALALERVETE 1132
Cdd:pfam13166 302 LLAQLPAVSDLASLLSAFELDVEDIESEAEVLNSQLDGLRRAL----EAKRKDPFKSIELDSVDAKIESINDLVASINEL 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1133 rlelaqkLHENYEKMESITKERNDLKELQESFEIEKKQlKEYAREMESAGLQTKeQLNIAHANLKEYQEIIKELRGSISE 1212
Cdd:pfam13166 378 -------IAKHNEITDNFEEEKNKAKKKLRLHLVEEFK-SEIDEYKDKYAGLEK-AINSLEKEIKNLEAEIKKLREEIKE 448
|
....
gi 1958755384 1213 KEAQ 1216
Cdd:pfam13166 449 LEAQ 452
|
|
| Laminin_I |
pfam06008 |
Laminin Domain I; coiled-coil structure. It has been suggested that the domains I and II from ... |
1505-1739 |
7.38e-03 |
|
Laminin Domain I; coiled-coil structure. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure.
Pssm-ID: 310534 [Multi-domain] Cd Length: 258 Bit Score: 40.47 E-value: 7.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1505 LNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQLSQ 1584
Cdd:pfam06008 17 INYNLENLTKQLQEYLSPENAHKIQIEILEKELSSLAQETEELQKKATQTLAKAQQVNAESERTLGHAKELAEAIKNLID 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1585 vkaDLRETMDQMEQL-KEQLEAQNSTLEsieiEKLKLTQQLNENLKEMTLVA-KENDDLKIMDEALREERDQLRESLRQT 1662
Cdd:pfam06008 97 ---NIKEINEKVATLgENDFALPSSDLS----RMLAEAQRMLGEIRSRDFGTqLQNAEAELKAAQDLLSRIQTWFQSPQE 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958755384 1663 EASDLEKQEKLRIAhlDLKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGET 1739
Cdd:pfam06008 170 ENKALANALRDSLA--EYEAKLSDLRELLREAAAKTRDANRLNLANQANLREFQRKKEEVSEQKNQLEETLKTARDS 244
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1505-1614 |
7.64e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.10 E-value: 7.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1505 LNQQLEAQKSSLEKVEMQNVNLTQRL------NETLEEmkSVAKERDELRSVEerltADRDQLKKSLEETITKNQELQEK 1578
Cdd:PRK09039 44 LSREISGKDSALDRLNSQIAELADLLslerqgNQDLQD--SVANLRASLSAAE----AERSRLQALLAELAGAGAAAEGR 117
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1958755384 1579 GHQLSQVKADLR----ETMDQMEQLKEQLEAQNSTLESIE 1614
Cdd:PRK09039 118 AGELAQELDSEKqvsaRALAQVELLNQQIAALRRQLAALE 157
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
496-680 |
7.97e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 7.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 496 EENLESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKEKneleefefleQREEKDQENELSSKVELLKEkedQIKELQRy 575
Cdd:COG3883 32 LEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKL----------QAEIAEAEAEIEERREELGE---RARALYR- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 576 idaQKSETTKTDLSYSSEATEDL---KQAMRTLSDLDTVALDA-KRESAFLRSENLELKERINELSDSCKQMENGIQMYQ 651
Cdd:COG3883 98 ---SGGSVSYLDVLLGSESFSDFldrLSALSKIADADADLLEElKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180
....*....|....*....|....*....
gi 1958755384 652 RQLEAKKQVQADLEKELQLAFQEISKLSA 680
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEA 203
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
500-1174 |
8.15e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 41.26 E-value: 8.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 500 ESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKEKNELEEFEFLeqrEEKDQENELSSKVELLKEKEDQIKELQRyidaQ 579
Cdd:pfam05557 1 RAELIESKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLD---RESDRNQELQKRIRLLEKREAEAEEALR----E 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 580 KSETTKTDLSYSSEATEDLKQAMRTLSDLDTVALDAKRESAFLRSE----NLELKERINELSDSCKQMEngiqMYQRQLE 655
Cdd:pfam05557 74 QAELNRLKKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQiqraELELQSTNSELEELQERLD----LLKAKAS 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 656 AKKQVQADLEKELQlafqeisklsalvdgkgllSNLELEKRITDLQKELNKEVEEKETLQKevhLLSELKSLPsEVETLR 735
Cdd:pfam05557 150 EAEQLRQNLEKQQS-------------------SLAEAEQRIKELEFEIQSQEQDSEIVKN---SKSELARIP-ELEKEL 206
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 736 RELHEKSEELCVITTEREKLFSEMAHKDSRiqglLEEIGNTKDDLAASQLSQRSSDEECQALKSLH----------VELK 805
Cdd:pfam05557 207 ERLREHNKHLNENIENKLLLKEEVEDLKRK----LEREEKYREEAATLELEKEKLEQELQSWVKLAqdtglnlrspEDLS 282
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 806 HRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLErrdsSLQSAEKEKNLLTEKLQQtleEVRALTQEK 885
Cdd:pfam05557 283 RRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQELAQYLKKIE----DLNKKLKRHKALVRRLQR---RVLLLTKER 355
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 886 NDLKQLQESLQTE------RDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKMKATEemsdhlpikgregssd 959
Cdd:pfam05557 356 DGYRAILESYDKEltmsnySPQLLERIEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQT---------------- 419
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 960 eVEQKLDGIDEENLLAESAHTvvgsgeDHGETEEQRKIDSLLQENSRLQQTlesiiaekeqlkmdlKENIEMSVENQEel 1039
Cdd:pfam05557 420 -LERELQALRQQESLADPSYS------KEEVDSLRRKLETLELERQRLREQ---------------KNELEMELERRC-- 475
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1040 riLRDELKRQQEIAAQEKDHVTEKSEELSRA-HERLAEIEEKLKEKNQKLQETQQQLVSIQEAMSEMQakvtdlenlqne 1118
Cdd:pfam05557 476 --LQGDYDPKKTKVLHLSMNPAAEAYQQRKNqLEKLQAEIERLKRLLKKLEDDLEQVLRLPETTSTMN------------ 541
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958755384 1119 frnqalalerveterlelaqklhenyekmesiTKERNDLKELQESFEIEKKQLKEY 1174
Cdd:pfam05557 542 --------------------------------FKEVLDLRKELESAELKNQRLKEV 565
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
592-797 |
8.17e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 8.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 592 SEATEDLKQAMRTLSDLDTVALDAKRESAFLRSENLELKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLA 671
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 672 FQEISKLSALVDGKGLLSNLELEKRITDLQKELNKEVEEKETLQKEVHLLSELKSLPSEVETLRRELHEKSEELCV---- 747
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAllae 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1958755384 748 ITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQAL 797
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
646-1151 |
8.77e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.60 E-value: 8.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 646 GIQMYQRQLEAKKQVqaDLEKELQLAFQEISKLSALVDGKGLLSNLELekrITDLQKELNKEVEEKETLQKEVHLLSE-- 723
Cdd:COG5022 773 KIQVIQHGFRLRRLV--DYELKWRLFIKLQPLLSLLGSRKEYRSYLAC---IIKLQKTIKREKKLRETEEVEFSLKAEvl 847
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 724 LKSLPSEVETLRRELHEKSEELCVITTER----EKLFSEMAHKDSRIQgLLEEIGNTKDDLAASQLSQRSSD--EECQAL 797
Cdd:COG5022 848 IQKFGRSLKAKKRFSLLKKETIYLQSAQRvelaERQLQELKIDVKSIS-SLKLVNLELESEIIELKKSLSSDliENLEFK 926
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 798 KSLHVELK----HRQEEVLEESERVKQELSQKTQELAQKTAEGQE----MLNQMEELR-------EKLERRDSSLQSAEK 862
Cdd:COG5022 927 TELIARLKkllnNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEeyedLLKKSTILVregnkanSELKNFKKELAELSK 1006
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 863 EKNLLTEKLQQTLEEVRALTQEKNDLKQLQEslQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQET-INMLKMKA 941
Cdd:COG5022 1007 QYGALQESTKQLKELPVEVAELQSASKIISS--ESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENsLLDDKQLY 1084
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 942 TEEMSdhlpikgrEGSSDEVEQKLDGIDEENLLAESAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQtlesiiaEKEQL 1021
Cdd:COG5022 1085 QLEST--------ENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEP-------VFQKL 1149
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1022 KMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELsraHERLAEIEEKLKEKNQK------LQETQQQL 1095
Cdd:COG5022 1150 SVLQLELDGLFWEANLEALPSPPPFAALSEKRLYQSALYDEKSKLS---SSEVNDLKNELIALFSKifsgwpRGDKLKKL 1226
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958755384 1096 VSIQEAMSEMQAKVTDLENLQNEFRNQALALERVETERLELAQKLHENYEKMESIT 1151
Cdd:COG5022 1227 ISEGWVPTEYSTSLKGFNNLNKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVL 1282
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
792-899 |
9.91e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 9.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 792 EECQALKS-LHVELKHRQEEVLEESERVKQE---LSQKTQELAQKTAEgqemlnqMEELREKLERRDSSLQSAEKEKNLL 867
Cdd:PRK12704 64 EEIHKLRNeFEKELRERRNELQKLEKRLLQKeenLDRKLELLEKREEE-------LEKKEKELEQKQQELEKKEEELEEL 136
|
90 100 110
....*....|....*....|....*....|....*
gi 1958755384 868 TEKLQQTLEEVRALTQE--KND-LKQLQESLQTER 899
Cdd:PRK12704 137 IEEQLQELERISGLTAEeaKEIlLEKVEEEARHEA 171
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
664-1093 |
9.96e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 9.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 664 LEKELQLAFQEISKLSalvdGKGLLSNLELEKRITDLQKELNKEVEEKETLQKEVHLLS-ELKSLPSEVETLRREL--HE 740
Cdd:COG4717 47 LLERLEKEADELFKPQ----GRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEeELEELEAELEELREELekLE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 741 KSEELCVITTEREKLFSEMAHKDSRIQGL---LEEIGNTKDDLAASQLSQRSSDEEC-QALKSLHVELKHRQEEVLEESE 816
Cdd:COG4717 123 KLLQLLPLYQELEALEAELAELPERLEELeerLEELRELEEELEELEAELAELQEELeELLEQLSLATEEELQDLAEELE 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 817 RVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERrDSSLQSAEKEKNLL----------------------------- 867
Cdd:COG4717 203 ELQQRLAELEEELEEAQEELEELEEELEQLENELEA-AALEERLKEARLLLliaaallallglggsllsliltiagvlfl 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 868 --------TEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINM--- 936
Cdd:COG4717 282 vlgllallFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEElee 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 937 -LKMKATEEMSDHLPIKGREGSSDEVEQKLDGIDE----ENLLAESAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQTL 1011
Cdd:COG4717 362 eLQLEELEQEIAALLAEAGVEDEEELRAALEQAEEyqelKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEEL 441
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755384 1012 ESIIAEKEQLKMDLKENiemsvenQEELRILRDELKRQQeiAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNQKLQET 1091
Cdd:COG4717 442 EELEEELEELREELAEL-------EAELEQLEEDGELAE--LLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
..
gi 1958755384 1092 QQ 1093
Cdd:COG4717 513 RL 514
|
|
| |
