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Conserved domains on  [gi|2022336844|ref|XP_040385926|]
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rapid alkalinization factor-like [Oryza brachyantha]

Protein Classification

rapid alkalinization factor family protein( domain architecture ID 10527526)

rapid alkalinization factor (RALF) family protein; the RALF family comprises a group of cysteine-rich peptides found throughout the plant kingdom which play multiple roles as hormonal signals in diverse processes, including root elongation, cell growth, pollen tube development, and fertilization

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RALF pfam05498
Rapid ALkalinization Factor (RALF); Family members found in Arabidopsis include RALF23. It has ...
 60-114 1.49e-22

Rapid ALkalinization Factor (RALF); Family members found in Arabidopsis include RALF23. It has been shown to reduce plant growth upon overexpression while mature plants were dwarfed and bushy. It has also been suggested that RALF23 of Arabidopsis, counteracts brassinosteroid (BR) growth-promoting effects which may be relieved by the down-regulation of RALF23


:

Pssm-ID: 428496  Cd Length: 65  Bit Score: 83.13  E-value: 1.49e-22
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2022336844  60 VVRRVLQGQS-YISYGALRRDTTPCSV-RGASYYNCQPGAEANPYTRGCSAITQCRG 114
Cdd:pfam05498   9 ISRRVLASQRkYISYGALKRNQVPCNGrRGASYYNCNPPGPANPYSRGCSKITRCRR 65
 
Name Accession Description Interval E-value
RALF pfam05498
Rapid ALkalinization Factor (RALF); Family members found in Arabidopsis include RALF23. It has ...
 60-114 1.49e-22

Rapid ALkalinization Factor (RALF); Family members found in Arabidopsis include RALF23. It has been shown to reduce plant growth upon overexpression while mature plants were dwarfed and bushy. It has also been suggested that RALF23 of Arabidopsis, counteracts brassinosteroid (BR) growth-promoting effects which may be relieved by the down-regulation of RALF23


Pssm-ID: 428496  Cd Length: 65  Bit Score: 83.13  E-value: 1.49e-22
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2022336844  60 VVRRVLQGQS-YISYGALRRDTTPCSV-RGASYYNCQPGAEANPYTRGCSAITQCRG 114
Cdd:pfam05498   9 ISRRVLASQRkYISYGALKRNQVPCNGrRGASYYNCNPPGPANPYSRGCSKITRCRR 65
PLN03222 PLN03222
rapid alkalinization factor 23-like protein; Provisional
 62-113 5.86e-22

rapid alkalinization factor 23-like protein; Provisional


Pssm-ID: 178761  Cd Length: 119  Bit Score: 83.25  E-value: 5.86e-22
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2022336844  62 RRVLQGQSYISYGALRRDTTPCSVRGASYYNCQPGAEANPYTRGCSAITQCR 113
Cdd:PLN03222   67 RRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 118
 
Name Accession Description Interval E-value
RALF pfam05498
Rapid ALkalinization Factor (RALF); Family members found in Arabidopsis include RALF23. It has ...
 60-114 1.49e-22

Rapid ALkalinization Factor (RALF); Family members found in Arabidopsis include RALF23. It has been shown to reduce plant growth upon overexpression while mature plants were dwarfed and bushy. It has also been suggested that RALF23 of Arabidopsis, counteracts brassinosteroid (BR) growth-promoting effects which may be relieved by the down-regulation of RALF23


Pssm-ID: 428496  Cd Length: 65  Bit Score: 83.13  E-value: 1.49e-22
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2022336844  60 VVRRVLQGQS-YISYGALRRDTTPCSV-RGASYYNCQPGAEANPYTRGCSAITQCRG 114
Cdd:pfam05498   9 ISRRVLASQRkYISYGALKRNQVPCNGrRGASYYNCNPPGPANPYSRGCSKITRCRR 65
PLN03222 PLN03222
rapid alkalinization factor 23-like protein; Provisional
 62-113 5.86e-22

rapid alkalinization factor 23-like protein; Provisional


Pssm-ID: 178761  Cd Length: 119  Bit Score: 83.25  E-value: 5.86e-22
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2022336844  62 RRVLQGQSYISYGALRRDTTPCSVRGASYYNCQPGAEANPYTRGCSAITQCR 113
Cdd:PLN03222   67 RRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 118
PLN03221 PLN03221
rapid alkalinization factor 23; Provisional
 62-113 2.17e-20

rapid alkalinization factor 23; Provisional


Pssm-ID: 178760  Cd Length: 137  Bit Score: 79.72  E-value: 2.17e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2022336844  62 RRVLQGQSYISYGALRRDTTPCSVRGASYYNCQPGAEANPYTRGCSAITQCR 113
Cdd:PLN03221   85 RRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 136
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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