|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
99-688 |
7.04e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 86.14 E-value: 7.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 99 ALNELLLRKEEEWRALQAHRTQLQEAALQDtrsQLEEAQGKLRCLQEDfvynlqvLEERDLELERYDAAFAQAREWEEAR 178
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEA---ELEELEAELEELEAE-------LAELEAELEELRLELEELELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 179 RAEVSELKIEAAKLRQALAREARKVEELQQQQQLAfQEHRLELERVHSDKNGEIDHHREQYENLK----------WTLER 248
Cdd:COG1196 287 QAEEYELLAELARLEQDIARLEERRRELEERLEEL-EEELAELEEELEELEEELEELEEELEEAEeeleeaeaelAEAEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 249 KLEELDGELALQRQELLLEFESKMR--KREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNA 326
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEalRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 327 ELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETfKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTR 406
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA-AARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAG 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 407 VLELQAHCETLE---AQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAwdAQIAQLSKEMVSRDLQIQTLQEEEVKLKA 483
Cdd:COG1196 525 AVAVLIGVEAAYeaaLEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGR--ATFLPLDKIRARAALAAALARGAIGAAVD 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 484 QVArSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQ 563
Cdd:COG1196 603 LVA-SDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAEL 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 564 EVVLKAVTLERDQAVQALRmhglprpgAQMLLRQHEEEiskdfpsseiQRLREQNTSLRNAIAQMRKEMEALshqipppi 643
Cdd:COG1196 682 EELAERLAEEELELEEALL--------AEEEEERELAE----------AEEERLEEELEEEALEEQLEAERE-------- 735
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 2217311169 644 QTAAESTDANQPDPEAGGDAATPDYVLA-LEAEIRTLKHKFKTLEK 688
Cdd:COG1196 736 ELLEELLEEEELLEEEALEELPEPPDLEeLERELERLEREIEALGP 781
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
245-833 |
2.97e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.67 E-value: 2.97e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 245 TLERKLEELDGELALqrqelllefeskmrkrehefrlqadnmsntalsreLKVKLLHKELEALKEAGAKAAESLQRAEAT 324
Cdd:COG1196 217 ELKEELKELEAELLL-----------------------------------LKLRELEAELEELEAELEELEAELEELEAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 325 NAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAvkgahVEQLQELQ 404
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAEL-----EEELEELE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 405 TRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQ 484
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 485 VARSQQDIERYKQQLSLAVERERslERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQE 564
Cdd:COG1196 417 ERLEEELEELEEALAELEEEEEE--EEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 565 VVLKAVTLERDQAVQALRMHGLprPGAQMLLRQHEEEISKDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIPPPIQ 644
Cdd:COG1196 495 LLLEAEADYEGFLEGVKAALLL--AGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAG 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 645 TAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKHKFKTLEKHLEDVLDPLKMSSPHAESQPSVRTSTETTGGSAQAG 724
Cdd:COG1196 573 RATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 725 QAGGSVQAGQAGGSVQAGPVSSGLALRKLGDRVQLLN-LLVTRLRQKVLREPLEPAALQRELPREVDQVHLEVLELRKQV 803
Cdd:COG1196 653 GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAeEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEA 732
|
570 580 590
....*....|....*....|....*....|
gi 2217311169 804 AELGKHLRIAQHGGAEPSGRKQPPASDAVA 833
Cdd:COG1196 733 EREELLEELLEEEELLEEEALEELPEPPDL 762
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
106-635 |
5.05e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 5.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 106 RKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKLRCLQEdfvynlqvLEERDLELERYDAAFAQAREWEEARRAEVSEL 185
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEE--------LEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 186 KIEAAKLRQALAREARKveelqqqqQLAFQEHRLELERVHSDKNGEIDHHREQyenlkwtlerkLEELDGELALQRQELL 265
Cdd:COG1196 378 EEELEELAEELLEALRA--------AAELAAQLEELEEAEEALLERLERLEEE-----------LEELEEALAELEEEEE 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 266 LEFESKMRKREHEFRLQADNMSNTALSRELKvkllhKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAM 345
Cdd:COG1196 439 EEEEALEEAAEEEAELEEEEEALLELLAELL-----EEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 346 SRARVKDLEDKLHSVQLTRKKEEETF---------KRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRVLELQAhcET 416
Cdd:COG1196 514 LLLAGLRGLAGAVAVLIGVEAAYEAAleaalaaalQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALA--AA 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 417 LEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYK 496
Cdd:COG1196 592 LARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 497 QQLSLAVERERSLERDQVQLGLDWQRRcDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQ 576
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEA-LLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEE 750
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217311169 577 AVQALRMHGLPRPGAQMLLRQHEEEIS-------------------KDFPSSEIQRLREQNTSLRNAIAQMRKEMEAL 635
Cdd:COG1196 751 EALEELPEPPDLEELERELERLEREIEalgpvnllaieeyeeleerYDFLSEQREDLEEARETLEEAIEEIDRETRER 828
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
172-691 |
7.65e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.05 E-value: 7.65e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 172 REWEEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEH----RLELERVHSDKNGEIDHHREQYENlkwtLE 247
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAEleaeLEELRLELEELELELEEAQAEEYE----LL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 248 RKLEELDGELALQRQEL--LLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATN 325
Cdd:COG1196 295 AELARLEQDIARLEERRreLEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 326 AELERKLQSRAGELQDLEamsrARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHvEQLQELQT 405
Cdd:COG1196 375 AEAEEELEELAEELLEAL----RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE-EALEEAAE 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 406 RVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKS-------------AWDAQIAQLSKEMVSRDLQIQ 472
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLlleaeadyegfleGVKAALLLAGLRGLAGAVAVL 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 473 TLQEEEVKLKAQVA--------------RSQQDIERYKQQ-------LSLAVERERSLERDQVQLG-LDWQRRCDDIERD 530
Cdd:COG1196 530 IGVEAAYEAALEAAlaaalqnivveddeVAAAAIEYLKAAkagratfLPLDKIRARAALAAALARGaIGAAVDLVASDLR 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 531 QIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEIS------- 603
Cdd:COG1196 610 EADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEelaerla 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 604 KDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIPPPIQTAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKHKF 683
Cdd:COG1196 690 EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELEREL 769
|
....*...
gi 2217311169 684 KTLEKHLE 691
Cdd:COG1196 770 ERLEREIE 777
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
312-639 |
4.24e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.86 E-value: 4.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 312 AKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRK--KEEETFKRKHEELDRLAREKDAVL 389
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKdlARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 390 VAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRA--EWRQADTA-KEKDAAIDQLREDASTVKSAWD---AQIAQLSKE 463
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLkeELKALREAlDELRAELTLLNEEAANLRERLEsleRRIAATERR 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 464 MVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIE--RDQIQKSEALIQG 541
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRelESKRSELRRELEE 919
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 542 LSMAKSQVAAKLQETEQALQE-QEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEIS----------------- 603
Cdd:TIGR02168 920 LREKLAQLELRLEGLEVRIDNlQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKelgpvnlaaieeyeelk 999
|
330 340 350
....*....|....*....|....*....|....*...
gi 2217311169 604 --KDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQI 639
Cdd:TIGR02168 1000 erYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDT 1037
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
122-635 |
9.78e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 69.30 E-value: 9.78e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 122 QEAALQDTRSQLEEAQGKlrclqeDFVYNLQVLE----ERDLELERYDAAFAQAREWEEA----------RRAEVSELKI 187
Cdd:PRK02224 185 QRGSLDQLKAQIEEKEEK------DLHERLNGLEselaELDEEIERYEEQREQARETRDEadevleeheeRREELETLEA 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 188 EAAKLRQALAREARKveelQQQQQLAFQEHRLELERVHSDKNGEIDhhreqyenlkwtlERKLEELDGELALQRQELLLE 267
Cdd:PRK02224 259 EIEDLRETIAETERE----REELAEEVRDLRERLEELEEERDDLLA-------------EAGLDDADAEAVEARREELED 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 268 FESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAM-- 345
Cdd:PRK02224 322 RDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERfg 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 346 -SRARVKDLEDKLHSVQLTR---KKEEETFKRKHEELDRLAREKDAVLVA---------VKGA-HVEQLQELQTRVLELQ 411
Cdd:PRK02224 402 dAPVDLGNAEDFLEELREERdelREREAELEATLRTARERVEEAEALLEAgkcpecgqpVEGSpHVETIEEDRERVEELE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 412 AHCETLEAQLRRAEWR--QADTAKEKDAAIDQLREDASTVksawDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQ 489
Cdd:PRK02224 482 AELEDLEEEVEEVEERleRAEDLVEAEDRIERLEERREDL----EELIAERRETIEEKRERAEELRERAAELEAEAEEKR 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 490 QDIERYKQQLSLAVERERSLERDQVQLgldwqrrcdDIERDQIQKSEALIQGLSMAKSQVaAKLQETEQALQEQEVVLKA 569
Cdd:PRK02224 558 EAAAEAEEEAEEAREEVAELNSKLAEL---------KERIESLERIRTLLAAIADAEDEI-ERLREKREALAELNDERRE 627
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217311169 570 VTLERDQAVQALR--MHGLPRPGAQMLLRQHEEEISKdfPSSEIQRLREQNTSLRNAIAQMRKEMEAL 635
Cdd:PRK02224 628 RLAEKRERKRELEaeFDEARIEEAREDKERAEEYLEQ--VEEKLDELREERDDLQAEIGAVENELEEL 693
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
165-635 |
2.29e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 68.63 E-value: 2.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 165 DAAFAQAREWEEARRAEVSE-----LKIEAAK----LRQAL----AREARKVEELQ--------QQQQLAFQEHRLELER 223
Cdd:PTZ00121 1151 AKRVEIARKAEDARKAEEARkaedaKKAEAARkaeeVRKAEelrkAEDARKAEAARkaeeerkaEEARKAEDAKKAEAVK 1230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 224 VHSDKNGEIDHHREQYENLKWTLERKLEELDGELALQRQELLLEFESK----MRK----------REHEFRLQADNMSNT 289
Cdd:PTZ00121 1231 KAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARkadeLKKaeekkkadeaKKAEEKKKADEAKKK 1310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 290 ALSRELKVKLLHKELEALKEAGA---KAAESLQRAEATNAELERKlqsrAGELQDLEAMSRARVKDLEDKLHSVQLTRKK 366
Cdd:PTZ00121 1311 AEEAKKADEAKKKAEEAKKKADAakkKAEEAKKAAEAAKAEAEAA----ADEAEAAEEKAEAAEKKKEEAKKKADAAKKK 1386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 367 EEEtfKRKHEELDRLARE--KDAVLVAVKGAHVEQLQELQTRVLELQahcETLEAQLRRAEWRQADTAKEKdaaIDQLRE 444
Cdd:PTZ00121 1387 AEE--KKKADEAKKKAEEdkKKADELKKAAAAKKKADEAKKKAEEKK---KADEAKKKAEEAKKADEAKKK---AEEAKK 1458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 445 DASTVKSAWDAQIAQLSKEMVSRDLQIQTLQE--EEVKLKAQVARSQQDIERYKQQLSLAVERERS--LERDQVQLGLDW 520
Cdd:PTZ00121 1459 AEEAKKKAEEAKKADEAKKKAEEAKKADEAKKkaEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAdeAKKAEEAKKADE 1538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 521 QRRCDDIER-DQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQmlLRQHE 599
Cdd:PTZ00121 1539 AKKAEEKKKaDELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE--AKKAE 1616
|
490 500 510
....*....|....*....|....*....|....*.
gi 2217311169 600 EEISKDFPSSEIQRLREQNTSLRNAIAQMRKEMEAL 635
Cdd:PTZ00121 1617 EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL 1652
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
364-904 |
2.86e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.04 E-value: 2.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 364 RKKEEETFKRKHEELDRLAREKDavLVAVKGAHVEQLQ---ELQTRVLELQAHCETLEAQLRRAEWRQAdtaKEKDAAID 440
Cdd:COG1196 171 KERKEEAERKLEATEENLERLED--ILGELERQLEPLErqaEKAERYRELKEELKELEAELLLLKLREL---EAELEELE 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 441 QLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDW 520
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEEL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 521 QRRCDDIERD---------QIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGA 591
Cdd:COG1196 326 AELEEELEELeeeleeleeELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 592 QMLLRQHEEEISKDfpSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIpppIQTAAESTDANQPDPEAGGDAAtpdyvlA 671
Cdd:COG1196 406 EEAEEALLERLERL--EEELEELEEALAELEEEEEEEEEALEEAAEEE---AELEEEEEALLELLAELLEEAA------L 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 672 LEAEIRTLKHKFKTLEKHLEDVLDPLKMSSPHAESQPSVRTSTETTGGSAQAGQAGGSVQAGQAGGSVQAGPVSSGLALR 751
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVE 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 752 KLGDRVQLLNLLVTRLRQKVLREPLEPAALQRELPR--------------EVDQVHLEVLELRKQVAELGKHLRIAQHGG 817
Cdd:COG1196 555 DDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAalargaigaavdlvASDLREADARYYVLGDTLLGRTLVAARLEA 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 818 AEPSGRKQPPASDAVALGREGLTkRGPMEAEDQGELFLHLRSVARAPQTLSMHRLQRKLKEAARKIISLRLEKEQLIEMG 897
Cdd:COG1196 635 ALRRAVTLAGRLREVTLEGEGGS-AGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAE 713
|
....*..
gi 2217311169 898 NRLRAEL 904
Cdd:COG1196 714 EERLEEE 720
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
105-618 |
1.10e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.32 E-value: 1.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 105 LRKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKlrclqedfvynlqvlEERDLELERYDAAFA----QAREWEEARRA 180
Cdd:PTZ00121 1193 LRKAEDARKAEAARKAEEERKAEEARKAEDAKKAE---------------AVKKAEEAKKDAEEAkkaeEERNNEEIRKF 1257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 181 EVSELKIEAAKLRQALAREARKVEelqqqqqlafqehrlELERVHSDKNGEidhhreqyENLKWTLERKLEELDGELALQ 260
Cdd:PTZ00121 1258 EEARMAHFARRQAAIKAEEARKAD---------------ELKKAEEKKKAD--------EAKKAEEKKKADEAKKKAEEA 1314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 261 RQelllefESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQ 340
Cdd:PTZ00121 1315 KK------ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE 1388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 341 DLEAMSRARVKDLEDKLHSVQLTRKKEEetfKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRVLELQAHCETL--- 417
Cdd:PTZ00121 1389 EKKKADEAKKKAEEDKKKADELKKAAAA---KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAkkk 1465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 418 --------EAQLRRAEWRQADTAKEK----DAAIDQLREDASTVKSAWDAQIAQLSKemvsrdlQIQTLQEEEVKLKAQV 485
Cdd:PTZ00121 1466 aeeakkadEAKKKAEEAKKADEAKKKaeeaKKKADEAKKAAEAKKKADEAKKAEEAK-------KADEAKKAEEAKKADE 1538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 486 ARSQQDIeRYKQQLSLAVERERSLERDQV-QLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQE 564
Cdd:PTZ00121 1539 AKKAEEK-KKADELKKAEELKKAEEKKKAeEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE 1617
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 2217311169 565 VVLKAVTLERDQAVqalrmhglpRPGAQMLLRQHEEEISKdfpSSEIQRLREQN 618
Cdd:PTZ00121 1618 AKIKAEELKKAEEE---------KKKVEQLKKKEAEEKKK---AEELKKAEEEN 1659
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
122-412 |
1.42e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 1.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 122 QEAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRAEVSELKIEAAKLRQALAREAR 201
Cdd:TIGR02168 668 TNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 202 KVEELQQQQQLAFQEHRLELERVHsdkngEIDHHREQYENLKWTLERKLEELDGELALQRQELllefeSKMRKREHEFRL 281
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLE-----EAEEELAEAEAEIEELEAQIEQLKEELKALREAL-----DELRAELTLLNE 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 282 QADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELE---RKLQSRAGELQDLEAMSRARVKDLEDKLH 358
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEeliEELESELEALLNERASLEEALALLRSELE 897
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 2217311169 359 SVQLTRKKEEETFKRKHEELDRLaREKdavlvavKGAHVEQLQELQTRVLELQA 412
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEEL-REK-------LAQLELRLEGLEVRIDNLQE 943
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
271-599 |
3.93e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 3.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 271 KMRKREHEFRLQAdnmSNTALSRelkVKLLHKELEalkeagaKAAESLQR-AEATNAELERKLQSRAGELqdleAMSRAR 349
Cdd:TIGR02168 171 KERRKETERKLER---TRENLDR---LEDILNELE-------RQLKSLERqAEKAERYKELKAELRELEL----ALLVLR 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 350 VKDLEDKLHSVQLTRKKEEetfkRKHEELDRLAREKDAVLVAVKGAHVE---QLQELQTRVLELQAHCETLEAQLRRAEW 426
Cdd:TIGR02168 234 LEELREELEELQEELKEAE----EELEELTAELQELEEKLEELRLEVSEleeEIEELQKELYALANEISRLEQQKQILRE 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 427 RQA--------------------DTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVA 486
Cdd:TIGR02168 310 RLAnlerqleeleaqleelesklDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 487 RSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVV 566
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE 469
|
330 340 350
....*....|....*....|....*....|...
gi 2217311169 567 LKAVTLERDQAVQALRMHGLPRPGAQMLLRQHE 599
Cdd:TIGR02168 470 LEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
184-500 |
6.75e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 6.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 184 ELKIEAAKLRQALAREARKVEELQQQQQLAFQEHrlelervhsdkngeidhhrEQYENLKWTLERKLEELDGELALQRQE 263
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKEL-------------------EELEEELEQLRKELEELSRQISALRKD 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 264 lLLEFESKMRKREHEFRLQADNMSNtalsrelkvklLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLE 343
Cdd:TIGR02168 735 -LARLEAEVEQLEERIAQLSKELTE-----------LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 344 AMS---RARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLvavkgahvEQLQELQTRVLELQAHCETLEAQ 420
Cdd:TIGR02168 803 EALdelRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS--------EDIESLAAEIEELEELIEELESE 874
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 421 LRRAEWRQAdtakEKDAAIDQLREDASTVksawDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLS 500
Cdd:TIGR02168 875 LEALLNERA----SLEEALALLRSELEEL----SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
123-508 |
7.39e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 7.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 123 EAALQDTrSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRAevSELKIEAAKLRQALAREARK 202
Cdd:TIGR02169 173 EKALEEL-EEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELL--KEKEALERQKEAIERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 203 veelqqqqqlafQEHRLELERVHSDKNGEIdhhrEQYENLKWTLERKLEELDGELALQRQELLLEFESKMRKREHefrlq 282
Cdd:TIGR02169 250 ------------EEELEKLTEEISELEKRL----EEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLER----- 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 283 adnmsntalsrelKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEamsrARVKDLEDKLHSVQL 362
Cdd:TIGR02169 309 -------------SIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT----EEYAELKEELEDLRA 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 363 TRKKEEETFKRKHEELDRLAREKDAvLVAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQL 442
Cdd:TIGR02169 372 ELEEVDKEFAETRDELKDYREKLEK-LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEI 450
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217311169 443 REDastvksawDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERS 508
Cdd:TIGR02169 451 KKQ--------EWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRG 508
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
93-509 |
2.83e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 61.32 E-value: 2.83e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 93 PLGSEPALNELLLRK-EEEWRALQAHRTQLQEA--ALQDTRSQLEEAQGKLRCLQED-----FVYNLQVLEERDLELERY 164
Cdd:COG4717 61 PQGRKPELNLKELKElEEELKEAEEKEEEYAELqeELEELEEELEELEAELEELREElekleKLLQLLPLYQELEALEAE 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 165 DAAFAQAREWEEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKW 244
Cdd:COG4717 141 LAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQE 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 245 TLERKLEELDgelALQRQELLLEFESKMRKREHEFRLQA-----DNMSNTALSRELKVK-----------LLHKELEALK 308
Cdd:COG4717 221 ELEELEEELE---QLENELEAAALEERLKEARLLLLIAAallalLGLGGSLLSLILTIAgvlflvlgllaLLFLLLAREK 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 309 EAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETfkRKHEELDRLAREKDAV 388
Cdd:COG4717 298 ASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEEL--EEELQLEELEQEIAAL 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 389 LVAVKGAHVEQLQELQTRV---LELQAHCETLEAQLRR-AEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEM 464
Cdd:COG4717 376 LAEAGVEDEEELRAALEQAeeyQELKEELEELEEQLEElLGELEELLEALDEEELEEELEELEEELEELEEELEELREEL 455
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 2217311169 465 VSRDLQIQTLQEEEvklkaQVARSQQDIERYKQQLSLAVERERSL 509
Cdd:COG4717 456 AELEAELEQLEEDG-----ELAELLQELEELKAELRELAEEWAAL 495
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
316-604 |
4.38e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.85 E-value: 4.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 316 ESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQltrkKEEETFKRKHEELDRLAREKDAVLVAVKG- 394
Cdd:TIGR02169 684 EGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE----QEEEKLKERLEELEEDLSSLEQEIENVKSe 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 395 -AHVE-QLQELQTRVLELQAHCETLEAQLRRAEWRQadtakekdaaIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQ-- 470
Cdd:TIGR02169 760 lKELEaRIEELEEDLHKLEEALNDLEARLSHSRIPE----------IQAELSKLEEEVSRIEARLREIEQKLNRLTLEke 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 471 -----IQTLQEEEVKLKAQVARSQQDIERYKQQLSlavERERSLERDQVQLgLDWQRRCDDIERDqIQKSEALIQGLSMA 545
Cdd:TIGR02169 830 ylekeIQELQEQRIDLKEQIKSIEKEIENLNGKKE---ELEEELEELEAAL-RDLESRLGDLKKE-RDELEAQLRELERK 904
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 2217311169 546 KSQVAAKLQETEQALQEQEVVLKAVtLERDQAVQALRMHGLPRPGAQMLLRQHEEEISK 604
Cdd:TIGR02169 905 IEELEAQIEKKRKRLSELKAKLEAL-EEELSEIEDPKGEDEEIPEEELSLEDVQAELQR 962
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
99-393 |
5.34e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 5.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 99 ALNELLLRKEEEWRALQAHRTQLQ------EAALQDTRSQLEEAQGKLRCLqedfvynLQVLEERDLELERYDAAFAQAR 172
Cdd:TIGR02168 730 ALRKDLARLEAEVEQLEERIAQLSkeltelEAEIEELEERLEEAEEELAEA-------EAEIEELEAQIEQLKEELKALR 802
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 173 EWEEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSdkngeIDHHREQYENLKWTLERKLEE 252
Cdd:TIGR02168 803 EALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES-----LAAEIEELEELIEELESELEA 877
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 253 LDGELALQRQELllefeskmrkreHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKL 332
Cdd:TIGR02168 878 LLNERASLEEAL------------ALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217311169 333 QSRAG-ELQDLEAMSRARVKDLEDKLHSV-QLTRKKEE---------ETFKRKHEELDRLAREKDAVLVAVK 393
Cdd:TIGR02168 946 SEEYSlTLEEAEALENKIEDDEEEARRRLkRLENKIKElgpvnlaaiEEYEELKERYDFLTAQKEDLTEAKE 1017
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
100-807 |
8.44e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 8.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 100 LNELLLRKEEEWRALQAHRTQLQEAA------LQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQARE 173
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELaeleekLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 174 WEEARRAEVSELKIEAaklrQALAREARKVEELQQQQQLAFQEHRL-ELERVHSDKNGEIDHHREQYEnlkwTLERKLEE 252
Cdd:TIGR02168 394 QIASLNNEIERLEARL----ERLEDRRERLQQEIEELLKKLEEAELkELQAELEELEEELEELQEELE----RLEEALEE 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 253 LDGELALQRQELLLEFESKMRKREHEFRLQadNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKL 332
Cdd:TIGR02168 466 LREELEEAEQALDAAERELAQLQARLDSLE--RLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAAL 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 333 QSRageLQDLEamsrarVKDLEDKLHSVQLTrkKEEETFKRKHEELDRLAREKdavlvaVKGAHVEQLQElQTRVLELQA 412
Cdd:TIGR02168 544 GGR---LQAVV------VENLNAAKKAIAFL--KQNELGRVTFLPLDSIKGTE------IQGNDREILKN-IEGFLGVAK 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 413 HCETLEAQLRRA-EWRQADT--AKEKDAAIDQLRE----------DASTVKSAW---------DAQIAQLSKEMVSRDLQ 470
Cdd:TIGR02168 606 DLVKFDPKLRKAlSYLLGGVlvVDDLDNALELAKKlrpgyrivtlDGDLVRPGGvitggsaktNSSILERRREIEELEEK 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 471 IQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIER--DQIQKSEALIQGLSMAKSQ 548
Cdd:TIGR02168 686 IEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQleERIAQLSKELTELEAEIEE 765
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 549 VAAKLQETEQALQEQEVVLKAVTLERDQAVQALrmhglprpgaQMLLRQHEEEiskdfpSSEIQRLREQNTSLRNAIAQM 628
Cdd:TIGR02168 766 LEERLEEAEEELAEAEAEIEELEAQIEQLKEEL----------KALREALDEL------RAELTLLNEEAANLRERLESL 829
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 629 RKEMEALSHQIpppiQTAAESTDANQPDpeaggdaatpdyVLALEAEIRTLKHKFKTLEKHLEDVLDPLKMSSPHAESQP 708
Cdd:TIGR02168 830 ERRIAATERRL----EDLEEQIEELSED------------IESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 709 SVRTSTettggSAQAGQAGGSVQAGQAGGSVQAGPVSSgLALRKLGDRVQLLNLLvTRLRQKVLREPLEPAALQRELPRE 788
Cdd:TIGR02168 894 SELEEL-----SEELRELESKRSELRRELEELREKLAQ-LELRLEGLEVRIDNLQ-ERLSEEYSLTLEEAEALENKIEDD 966
|
730
....*....|....*....
gi 2217311169 789 VDQVHLEVLELRKQVAELG 807
Cdd:TIGR02168 967 EEEARRRLKRLENKIKELG 985
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
246-511 |
1.16e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.70 E-value: 1.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 246 LERKLEELDGELALQRQELllefeSKMRKREHEFRLQADNMSNtalsrelKVKLLHKELEALKEAGAKAAESLQRAEATN 325
Cdd:TIGR02169 679 LRERLEGLKRELSSLQSEL-----RRIENRLDELSQELSDASR-------KIGEIEKEIEQLEQEEEKLKERLEELEEDL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 326 AELERKLQSRAGELQDLEamsrARVKDLEDKLHSVQLTRKKEEETFKR-KHEELDRLAREKDAVLVAVKGAHVEQLQELQ 404
Cdd:TIGR02169 747 SSLEQEIENVKSELKELE----ARIEELEEDLHKLEEALNDLEARLSHsRIPEIQAELSKLEEEVSRIEARLREIEQKLN 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 405 TRVLE---LQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSA------WDAQIAQLSKEMVSRDLQIQTLQ 475
Cdd:TIGR02169 823 RLTLEkeyLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELeaalrdLESRLGDLKKERDELEAQLRELE 902
|
250 260 270
....*....|....*....|....*....|....*.
gi 2217311169 476 EEEVKLKAQVARSQQDIERYKQQLSLAVERERSLER 511
Cdd:TIGR02169 903 RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIED 938
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
104-705 |
1.68e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 1.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 104 LLRKEEEWRALQAH----RTQLQEAALQDTRSQLEEAQGKLRCLQEDfvynlqvLEERDLELERYDAAFAQAREWEEARR 179
Cdd:TIGR02168 215 YKELKAELRELELAllvlRLEELREELEELQEELKEAEEELEELTAE-------LQELEEKLEELRLEVSELEEEIEELQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 180 AEVSELKIEAAKLrqalarEARKVEELQQQQQLAFQEHRLELERVHSDKngeidhHREQYENLKWTLERKLEELDGELAL 259
Cdd:TIGR02168 288 KELYALANEISRL------EQQKQILRERLANLERQLEELEAQLEELES------KLDELAEELAELEEKLEELKEELES 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 260 QRQEL--LLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQS-RA 336
Cdd:TIGR02168 356 LEAELeeLEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEaEL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 337 GELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREkdavlVAVKGAHVEQLQELQTRVLELQAHCET 416
Cdd:TIGR02168 436 KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE-----LAQLQARLDSLERLQENLEGFSEGVKA 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 417 LEAQLRR---------------AEWRQADTAKEKDAAIDQLREDASTVKSAWDAQiAQLSKEMVS-------RDLQIQTL 474
Cdd:TIGR02168 511 LLKNQSGlsgilgvlselisvdEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFL-KQNELGRVTflpldsiKGTEIQGN 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 475 QEEEVKLKAQVARSQQDIERYKQQLSLAVER--ERSLERDQVQLGLDWQRRCDDIER------DQI----------QKSE 536
Cdd:TIGR02168 590 DREILKNIEGFLGVAKDLVKFDPKLRKALSYllGGVLVVDDLDNALELAKKLRPGYRivtldgDLVrpggvitggsAKTN 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 537 ALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRmhGLPRPGAQMLLRQHEEEISKDFPSSEIQRLRE 616
Cdd:TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELE--QLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 617 QNTSLRNAIAQMRKEMEALSHQI----PPPIQTAAESTDANQPDPEAGGDAATPDYVL-ALEAEIRTLKHKFKTLEKHLE 691
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLeeaeEELAEAEAEIEELEAQIEQLKEELKALREALdELRAELTLLNEEAANLRERLE 827
|
650
....*....|....
gi 2217311169 692 DVLDPLKMSSPHAE 705
Cdd:TIGR02168 828 SLERRIAATERRLE 841
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
316-691 |
2.88e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 2.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 316 ESLQRAEATNAELERklqsrageLQDLeamsrarVKDLEDKLHSVQLTRKKEEEtFKRKHEELDRLARekdAVLVAVKGA 395
Cdd:TIGR02168 176 ETERKLERTRENLDR--------LEDI-------LNELERQLKSLERQAEKAER-YKELKAELRELEL---ALLVLRLEE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 396 HVEQLQELQTRVLELQAHCETLEAQLRRAEwrqadtakekdaaidqlredastvksawdAQIAQLSKEMVSRDLQIQTLQ 475
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELE-----------------------------EKLEELRLEVSELEEEIEELQ 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 476 EEEVKLKAQVARSQQDIERYKQQLSLAverERSLERDQVQLGLDWQRRcdDIERDQIQKSEALIQGLSMAKSQVAAKLQE 555
Cdd:TIGR02168 288 KELYALANEISRLEQQKQILRERLANL---ERQLEELEAQLEELESKL--DELAEELAELEEKLEELKEELESLEAELEE 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 556 TEQALQEQEVVLKAVTLERDQAvqalrmhglprpgaqmllrqheeeiskdfpSSEIQRLREQNTSLRNAIAQMRKEMEAL 635
Cdd:TIGR02168 363 LEAELEELESRLEELEEQLETL------------------------------RSKVAQLELQIASLNNEIERLEARLERL 412
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 2217311169 636 SHQipppIQTAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKHKFKTLEKHLE 691
Cdd:TIGR02168 413 EDR----RERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE 464
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
99-691 |
4.33e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 4.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 99 ALNELLLRKEEEWRALQAHRTQLQE------AALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAR 172
Cdd:TIGR02168 257 ELTAELQELEEKLEELRLEVSELEEeieelqKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 173 EWEEARRAEVSELKIEAAKLRQALAREARKveelqqqqQLAFQEHRLELERVHSDKNGEIDHHREQYENLKWTLER---K 249
Cdd:TIGR02168 337 EELAELEEKLEELKEELESLEAELEELEAE--------LEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERleaR 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 250 LEELDGELALQRQElllefeskmrKREHEFRLQADNMSNTALSRELKVKLLHK---ELEALKEAGAKAAESLQRAEATNA 326
Cdd:TIGR02168 409 LERLEDRRERLQQE----------IEELLKKLEEAELKELQAELEELEEELEElqeELERLEEALEELREELEEAEQALD 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 327 ELERKLQSRAGELQDLEAMsRARVKDLEDKLHSVQLTRKKEEETFKR-----KHEELDRLAREK------DAVLV----- 390
Cdd:TIGR02168 479 AAERELAQLQARLDSLERL-QENLEGFSEGVKALLKNQSGLSGILGVlseliSVDEGYEAAIEAalggrlQAVVVenlna 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 391 ---------------------------AVKGAHVEQLQElQTRVLELQAHCETLEAQLRRA-EWRQADT--AKEKDAAID 440
Cdd:TIGR02168 558 akkaiaflkqnelgrvtflpldsikgtEIQGNDREILKN-IEGFLGVAKDLVKFDPKLRKAlSYLLGGVlvVDDLDNALE 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 441 QLRE----------DASTVKSAW---------DAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSL 501
Cdd:TIGR02168 637 LAKKlrpgyrivtlDGDLVRPGGvitggsaktNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ 716
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 502 AVERERSLERDQVQLGLDWQRRCDDIER--DQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQ 579
Cdd:TIGR02168 717 LRKELEELSRQISALRKDLARLEAEVEQleERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE 796
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 580 ALRMHGLPRPGAQMLLRQHEEEISK-----DFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQI------PPPIQTAAE 648
Cdd:TIGR02168 797 ELKALREALDELRAELTLLNEEAANlrerlESLERRIAATERRLEDLEEQIEELSEDIESLAAEIeeleelIEELESELE 876
|
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 2217311169 649 STDANQPDPEAGGDAATPDYVlALEAEIRTLKHKFKTLEKHLE 691
Cdd:TIGR02168 877 ALLNERASLEEALALLRSELE-ELSEELRELESKRSELRRELE 918
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
99-686 |
1.05e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 99 ALNELLLRKEEEWRALQAHRTQLQ------EAALQDTRSQLEEAQGKLRCLQEDFvynLQVLEERDLELERYDAAFAQAR 172
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLErqleelEAQLEELESKLDELAEELAELEEKL---EELKEELESLEAELEELEAELE 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 173 EWE----------EARRAEVSELKIEAAKLR----------QALAREARKVEELQQQQQLAFQEHRL-ELERVHSDKNGE 231
Cdd:TIGR02168 369 ELEsrleeleeqlETLRSKVAQLELQIASLNneierlearlERLEDRRERLQQEIEELLKKLEEAELkELQAELEELEEE 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 232 IDHHREQYEnlkwTLERKLEELDGELALQRQELLLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKE-------- 303
Cdd:TIGR02168 449 LEELQEELE----RLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSglsgilgv 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 304 --------------LEAL------------KEAGAKAAESLQRAE------------------ATNAELERKLQSRAGEL 339
Cdd:TIGR02168 525 lselisvdegyeaaIEAAlggrlqavvvenLNAAKKAIAFLKQNElgrvtflpldsikgteiqGNDREILKNIEGFLGVA 604
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 340 QDLE-------------------------AMSRARVKDLE---------------------DKLHSVQLTRKKEEETFKR 373
Cdd:TIGR02168 605 KDLVkfdpklrkalsyllggvlvvddldnALELAKKLRPGyrivtldgdlvrpggvitggsAKTNSSILERRREIEELEE 684
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 374 KHEELDRLAREKDAVLVAVKgahvEQLQELQTRVLELQAHCETLEAQLRRAEwRQADTAKEKDAAIDQLREDASTVKSAW 453
Cdd:TIGR02168 685 KIEELEEKIAELEKALAELR----KELEELEEELEQLRKELEELSRQISALR-KDLARLEAEVEQLEERIAQLSKELTEL 759
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 454 DAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERD--QVQLGLDWQRRCDDIERDQ 531
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEaaNLRERLESLERRIAATERR 839
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 532 IQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEeiskdfpssEI 611
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES---------KR 910
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217311169 612 QRLREQNTSLRNAIAQMRKEMEALSHQIPPPIQTAAESTDANQPDPEAgGDAATPDYVLALEAEIRTLKHKFKTL 686
Cdd:TIGR02168 911 SELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEA-LENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
102-492 |
1.10e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 1.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 102 ELLLRKEEEWRALQAHRTQLQEAALQD-TRSQLEEAQGKLRclqedfvynlqvlEERDLELERYDAAfaQAREWEEARRA 180
Cdd:PTZ00121 1460 EEAKKKAEEAKKADEAKKKAEEAKKADeAKKKAEEAKKKAD-------------EAKKAAEAKKKAD--EAKKAEEAKKA 1524
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 181 EVSELKIEAAKlrqalAREARKVEELQQQQQLAFQEhrlELERVHSDKNGEidhhreqyenlkwtlERKLEELDGELALQ 260
Cdd:PTZ00121 1525 DEAKKAEEAKK-----ADEAKKAEEKKKADELKKAE---ELKKAEEKKKAE---------------EAKKAEEDKNMALR 1581
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 261 RQELLLEFEskmRKREHEFrlqadnMSNTALSRELKVKLLHKELEALKEagakaAESLQRAEATNAELERKLQSRAGELQ 340
Cdd:PTZ00121 1582 KAEEAKKAE---EARIEEV------MKLYEEEKKMKAEEAKKAEEAKIK-----AEELKKAEEEKKKVEQLKKKEAEEKK 1647
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 341 DLEAMSRArvkDLEDKLHSVQLTRKKEEEtfKRKHEELDRLAREKDAVLVAVKGAHVE--QLQELQTRVLELQAHCEtle 418
Cdd:PTZ00121 1648 KAEELKKA---EEENKIKAAEEAKKAEED--KKKAEEAKKAEEDEKKAAEALKKEAEEakKAEELKKKEAEEKKKAE--- 1719
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 419 aQLRRAEWRQADTAKE--KDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQI---------QTLQEEEVKLKAQVAR 487
Cdd:PTZ00121 1720 -ELKKAEEENKIKAEEakKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIrkekeavieEELDEEDEKRRMEVDK 1798
|
....*
gi 2217311169 488 SQQDI 492
Cdd:PTZ00121 1799 KIKDI 1803
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
106-451 |
1.28e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 1.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 106 RKEEEWRALQAHRTQLQEAALQDtrsQLEEAQGKLRCLQEdfvynlqvleerdlELERydaafAQAREWEEARRAEVSEL 185
Cdd:TIGR02168 210 EKAERYKELKAELRELELALLVL---RLEELREELEELQE--------------ELKE-----AEEELEELTAELQELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 186 KIEAAKLRQalareaRKVEELQQQQQLAFQEHRLELervhSDKNGEIDHHREQYENLKWTLERKLEELDgELALQRQELL 265
Cdd:TIGR02168 268 KLEELRLEV------SELEEEIEELQKELYALANEI----SRLEQQKQILRERLANLERQLEELEAQLE-ELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 266 LEFEskmrkrehefrlqadnmsntalSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLE-- 343
Cdd:TIGR02168 337 EELA----------------------ELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLElq 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 344 -AMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKdavlvavkgaHVEQLQELQTRVLELQAHCETLEAQLR 422
Cdd:TIGR02168 395 iASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE----------LQAELEELEEELEELQEELERLEEALE 464
|
330 340
....*....|....*....|....*....
gi 2217311169 423 RAEWRQADTAKEKDAAIDQLREDASTVKS 451
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQARLDS 493
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
160-579 |
1.50e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 1.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 160 ELERYDAAFAQAREW----EEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHH 235
Cdd:PTZ00121 1409 ELKKAAAAKKKADEAkkkaEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEA 1488
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 236 REQYENLKwtleRKLEEL-DGELALQRQELLLEFESKmrKREHEFRLQADNMSNTALSRELKVKllhKELEALKEAGAKA 314
Cdd:PTZ00121 1489 KKKAEEAK----KKADEAkKAAEAKKKADEAKKAEEA--KKADEAKKAEEAKKADEAKKAEEKK---KADELKKAEELKK 1559
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 315 AESLQRAEATNAELERKLQS--RAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAV 392
Cdd:PTZ00121 1560 AEEKKKAEEAKKAEEDKNMAlrKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 393 KGAHVEQLQELQTRVLELQAHCETLE-AQLRRAEWRQADTAK----EKDAAIDQLREDASTVKSAWDA---------QIA 458
Cdd:PTZ00121 1640 KKEAEEKKKAEELKKAEEENKIKAAEeAKKAEEDKKKAEEAKkaeeDEKKAAEALKKEAEEAKKAEELkkkeaeekkKAE 1719
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 459 QLSKEMVSRDLQIQTL--QEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQ----VQLGLDWQRRCDDIERDQI 532
Cdd:PTZ00121 1720 ELKKAEEENKIKAEEAkkEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEkeavIEEELDEEDEKRRMEVDKK 1799
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 2217311169 533 QK-----SEALIQGlSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQ 579
Cdd:PTZ00121 1800 IKdifdnFANIIEG-GKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFE 1850
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
104-513 |
7.47e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 53.23 E-value: 7.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 104 LLRKEEEWRALQAHRTQLqEAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELE------RYDAAFAQAREWEEA 177
Cdd:COG4717 83 AEEKEEEYAELQEELEEL-EEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAElaelpeRLEELEERLEELREL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 178 RRaEVSELKIEAAKLRQALAREARKVEELQQQqqlAFQEHRLELERVHSDkngeidhhREQYENLKWTLERKLEELDGEL 257
Cdd:COG4717 162 EE-ELEELEAELAELQEELEELLEQLSLATEE---ELQDLAEELEELQQR--------LAELEEELEEAQEELEELEEEL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 258 AlqrqelllEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERK----LQ 333
Cdd:COG4717 230 E--------QLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLARekasLG 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 334 SRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRVLElQAH 413
Cdd:COG4717 302 KEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLA-EAG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 414 CETLEAQLRRAEwrQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEmvsrdlqiqTLQEEEVKLKAQVARSQQDIE 493
Cdd:COG4717 381 VEDEEELRAALE--QAEEYQELKEELEELEEQLEELLGELEELLEALDEE---------ELEEELEELEEELEELEEELE 449
|
410 420
....*....|....*....|
gi 2217311169 494 RYKQQLSLAVERERSLERDQ 513
Cdd:COG4717 450 ELREELAELEAELEQLEEDG 469
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
99-562 |
8.57e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 8.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 99 ALNELLLRKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKLRCLQEDfvynlqvLEERDLELERYDAAFAQAREWEEAR 178
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERE-------LEERERRRARLEALLAALGLPLPAS 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 179 RAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSdkngEIDHHREQYENLKWTLERKLEELDGELA 258
Cdd:COG4913 379 AEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEA----EIASLERRKSNIPARLLALRDALAEALG 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 259 LQRQEL-----LLEfeskMRKREHEFRLQADNMSNTA----LSRELKVKLLHKELEALKEAGA----KAAESLQRAEATN 325
Cdd:COG4913 455 LDEAELpfvgeLIE----VRPEEERWRGAIERVLGGFaltlLVPPEHYAAALRWVNRLHLRGRlvyeRVRTGLPDPERPR 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 326 AE---LERKLQSRAGELQD-LEA-----MSRARVKDLED-KLHSVQLTR----KKEEETF-KRKHEELDRL------ARE 384
Cdd:COG4913 531 LDpdsLAGKLDFKPHPFRAwLEAelgrrFDYVCVDSPEElRRHPRAITRagqvKGNGTRHeKDDRRRIRSRyvlgfdNRA 610
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 385 KDAVLVAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRAE------WRQADTAK------EKDAAIDQLREDASTVKSA 452
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQrlaeysWDEIDVASaereiaELEAELERLDASSDDLAAL 690
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 453 wDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQvqlgLDWQRRCDDIERDQI 532
Cdd:COG4913 691 -EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL----LEERFAAALGDAVER 765
|
490 500 510
....*....|....*....|....*....|
gi 2217311169 533 QKSEALIQGLSMAKSQVAAKLQETEQALQE 562
Cdd:COG4913 766 ELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
218-631 |
1.49e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.35 E-value: 1.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 218 RLELERVHSDKNGEIDHHREQYENLKWT--------LERKLEELDGEL----------ALQRQELLLEFESKMRKREHEF 279
Cdd:PRK02224 175 RLGVERVLSDQRGSLDQLKAQIEEKEEKdlherlngLESELAELDEEIeryeeqreqaRETRDEADEVLEEHEERREELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 280 RLQAD------NMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELER------KLQSRAGELQDLEAMSR 347
Cdd:PRK02224 255 TLEAEiedlreTIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAvearreELEDRDEELRDRLEECR 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 348 ARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHvEQLQELQTRVLELQAHCETLEAQLRRAEWR 427
Cdd:PRK02224 335 VAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRR-EEIEELEEEIEELRERFGDAPVDLGNAEDF 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 428 QADTAKEKDAAIDQLREDASTVKSAWD--AQIAQLSKE------------------MVSRDLQIQTLQEEEVKLKAQVAR 487
Cdd:PRK02224 414 LEELREERDELREREAELEATLRTARErvEEAEALLEAgkcpecgqpvegsphvetIEEDRERVEELEAELEDLEEEVEE 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 488 SQQDIERYKQQLSLAVERERSLERDQvqlglDWQRRCDDiERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQE----- 562
Cdd:PRK02224 494 VEERLERAEDLVEAEDRIERLEERRE-----DLEELIAE-RRETIEEKRERAEELRERAAELEAEAEEKREAAAEaeeea 567
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217311169 563 QEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEiskdfpssEIQRLREQntslRNAIAQMRKE 631
Cdd:PRK02224 568 EEAREEVAELNSKLAELKERIESLERIRTLLAAIADAED--------EIERLREK----REALAELNDE 624
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
347-639 |
1.94e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.43 E-value: 1.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 347 RARVKDLEDKLHSVQLTRKKEEETFKRKHEE-LDRLAREKDAVLVAVkgahVEQLQELQTRVLELQAHCETLEAQLRRAE 425
Cdd:pfam15921 237 KGRIFPVEDQLEALKSESQNKIELLLQQHQDrIEQLISEHEVEITGL----TEKASSARSQANSIQSQLEIIQEQARNQN 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 426 WRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQI-------QTLQEEEVKLKAQVARSQQDIERYKQQ 498
Cdd:pfam15921 313 SMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELtearterDQFSQESGNLDDQLQKLLADLHKREKE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 499 LSLAVERERSL-ERDQ-VQLGLDWQRRCDDIERDQIQKSEALIQGL--------------------SMAK-SQVAAKLQE 555
Cdd:pfam15921 393 LSLEKEQNKRLwDRDTgNSITIDHLRRELDDRNMEVQRLEALLKAMksecqgqmerqmaaiqgkneSLEKvSSLTAQLES 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 556 TEQALQE--QEVVLKAVTLERDQAVQALRMHGLPRpgAQMLLRQHEEEISK-----DFPSSEIQRLREQNTSLRNAiaqm 628
Cdd:pfam15921 473 TKEMLRKvvEELTAKKMTLESSERTVSDLTASLQE--KERAIEATNAEITKlrsrvDLKLQELQHLKNEGDHLRNV---- 546
|
330
....*....|.
gi 2217311169 629 RKEMEALSHQI 639
Cdd:pfam15921 547 QTECEALKLQM 557
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
395-634 |
2.20e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.22 E-value: 2.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 395 AHVEQLQELQTRVLELQAHCETLEaQLRrAEWRQADTAKEKDAAIDQLREDAStvksAWDAQ--IAQLSKEMVSRDLQIQ 472
Cdd:COG4913 232 EHFDDLERAHEALEDAREQIELLE-PIR-ELAERYAAARERLAELEYLRAALR----LWFAQrrLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 473 TLQEEEVKLKAQVARSQQDIERYKQQL-SLAVERERSLERDQVQLgldwQRRCDDIERDQiQKSEALIQGLSMA----KS 547
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIrGNGGDRLEQLEREIERL----ERELEERERRR-ARLEALLAALGLPlpasAE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 548 QVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRmhglprpgaqmLLRQHEEEISKdfpssEIQRLREQNTSLRNAIAQ 627
Cdd:COG4913 381 EFAALRAEAAALLEALEEELEALEEALAEAEAALR-----------DLRRELRELEA-----EIASLERRKSNIPARLLA 444
|
....*..
gi 2217311169 628 MRKEMEA 634
Cdd:COG4913 445 LRDALAE 451
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
108-419 |
2.61e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.58 E-value: 2.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 108 EEEWRALQAHRTQLQEAaLQDTRSQLEEAQGKLRCLQEDFVYNLQVLEE-------RDLELERYDAAFAQAREWEEARRA 180
Cdd:PRK02224 404 PVDLGNAEDFLEELREE-RDELREREAELEATLRTARERVEEAEALLEAgkcpecgQPVEGSPHVETIEEDRERVEELEA 482
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 181 EVSELKIEAAKLRQALAREARKVEelqqqqqlafQEHRLE-LERVHSDKNGEIDHHREqyenlkwTLERKLEELDgELAL 259
Cdd:PRK02224 483 ELEDLEEEVEEVEERLERAEDLVE----------AEDRIErLEERREDLEELIAERRE-------TIEEKRERAE-ELRE 544
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 260 QRQELLLEFESKmRKREHEFRLQADNMSNTALSRELKVKLLHKELEALkeagAKAAESLQRAEATNAELERkLQSRAGEL 339
Cdd:PRK02224 545 RAAELEAEAEEK-REAAAEAEEEAEEAREEVAELNSKLAELKERIESL----ERIRTLLAAIADAEDEIER-LREKREAL 618
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 340 QDLEAMSRARVKDL------------EDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAH--VEQLQELQT 405
Cdd:PRK02224 619 AELNDERRERLAEKrerkreleaefdEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVEneLEELEELRE 698
|
330
....*....|....
gi 2217311169 406 RVLELQAHCETLEA 419
Cdd:PRK02224 699 RREALENRVEALEA 712
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
108-653 |
2.65e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 2.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 108 EEEWRALQAHRTQLQEAalqdtRSQLEEAQGKLRCLQEdfvynlqvLEERDlelERYDAAFAQAREWEEARRAevseLKI 187
Cdd:COG4913 224 FEAADALVEHFDDLERA-----HEALEDAREQIELLEP--------IRELA---ERYAAARERLAELEYLRAA----LRL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 188 EAAKLRQALAREARkveELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKW----TLERKLEELDGELAlQRQE 263
Cdd:COG4913 284 WFAQRRLELLEAEL---EELRAELARLEAELERLEARLDALREELDELEAQIRGNGGdrleQLEREIERLERELE-ERER 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 264 LLLEFESKMRKREHEFRLQADNMsnTALSRELKvkllhKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLE 343
Cdd:COG4913 360 RRARLEALLAALGLPLPASAEEF--AALRAEAA-----ALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 344 A--------MSRAR----------------------VKDLEDK--------LHSVQLTRKKEEETFKRKHEELDRLAREK 385
Cdd:COG4913 433 RrksniparLLALRdalaealgldeaelpfvgelieVRPEEERwrgaiervLGGFALTLLVPPEHYAAALRWVNRLHLRG 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 386 DAVLVAVKGAHVEQLQE---------------------LQTRVLELQAH--CETLEaQLRRAEW--------RQADTAKE 434
Cdd:COG4913 513 RLVYERVRTGLPDPERPrldpdslagkldfkphpfrawLEAELGRRFDYvcVDSPE-ELRRHPRaitragqvKGNGTRHE 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 435 KDaaidqlreDASTVKSAWdaQIAQLSKEmvsrdlQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLER--D 512
Cdd:COG4913 592 KD--------DRRRIRSRY--VLGFDNRA------KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRlaE 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 513 QVQLGLDW---QRRCDDIE--RDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQAL-----R 582
Cdd:COG4913 656 YSWDEIDVasaEREIAELEaeLERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELdelqdR 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 583 MHGLPRPG------------AQMLLRQHEEEISKDFpSSEIQRLREQntsLRNAIAQMRKEMEALSHQIPPPIQTAAEST 650
Cdd:COG4913 736 LEAAEDLArlelralleerfAAALGDAVERELRENL-EERIDALRAR---LNRAEEELERAMRAFNREWPAETADLDADL 811
|
...
gi 2217311169 651 DAN 653
Cdd:COG4913 812 ESL 814
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
329-563 |
3.01e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 3.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 329 ERKLQSRAGELQ----DLEAMsRARVKDLEDKLHsvQLTRKKEE-ETFKRKHEELDRLAREKDAVLVAvkgAHVEQLQEL 403
Cdd:COG4913 220 EPDTFEAADALVehfdDLERA-HEALEDAREQIE--LLEPIRELaERYAAARERLAELEYLRAALRLW---FAQRRLELL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 404 QTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKA 483
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGL 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 484 QVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIERdQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQ 563
Cdd:COG4913 374 PLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRR-ELRELEAEIASLERRKSNIPARLLALRDALAEA 452
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
99-435 |
4.09e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 4.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 99 ALNELLLRKEEEWRALQAHRTQLQeAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEAR 178
Cdd:TIGR02169 685 GLKRELSSLQSELRRIENRLDELS-QELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKEL 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 179 RAEVSELKIEAAKLRQAL----AREARKVEELQQQQQLAFQEHRLELERVHSDKNGEID--HHREQY-ENLKWTLERKLE 251
Cdd:TIGR02169 764 EARIEELEEDLHKLEEALndleARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNrlTLEKEYlEKEIQELQEQRI 843
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 252 ELDGELAL--QRQELLLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELE 329
Cdd:TIGR02169 844 DLKEQIKSieKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELK 923
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 330 RKLQSRAGELQDLEAMSRARVKDLEDK--LHSVQLTRKKEEETFkRKHEELDRLArekdavlvavkgahVEQLQELQTRV 407
Cdd:TIGR02169 924 AKLEALEEELSEIEDPKGEDEEIPEEElsLEDVQAELQRVEEEI-RALEPVNMLA--------------IQEYEEVLKRL 988
|
330 340
....*....|....*....|....*...
gi 2217311169 408 LELQAHCETLEAQLRRAEWRQADTAKEK 435
Cdd:TIGR02169 989 DELKEKRAKLEEERKAILERIEEYEKKK 1016
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
145-694 |
4.51e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 4.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 145 EDFVYNlQVLEERDLElERYDAAFAQAREWEEARRAEVSELK--------IEAAKLRQALAREARKVEELQQQQQLAFQE 216
Cdd:COG4913 210 DDFVRE-YMLEEPDTF-EAADALVEHFDDLERAHEALEDAREqiellepiRELAERYAAARERLAELEYLRAALRLWFAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 217 HRLELERvhsdknGEIDHHREQYEnlkwTLERKLEELDGELALQRQELLlefeskmrkrehEFRLQADNMSNTALSR-EL 295
Cdd:COG4913 288 RRLELLE------AELEELRAELA----RLEAELERLEARLDALREELD------------ELEAQIRGNGGDRLEQlER 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 296 KVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKH 375
Cdd:COG4913 346 EIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 376 EELDRLAREKDAVlvavkGAHVEQL-----QELQTRVLELQAHCETLEAQLRRAEWRQA--------------DTAKEKD 436
Cdd:COG4913 426 AEIASLERRKSNI-----PARLLALrdalaEALGLDEAELPFVGELIEVRPEEERWRGAiervlggfaltllvPPEHYAA 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 437 AA--IDQLR-------EDASTVKSawDAQIAQLSKEMVSRDLQIQT--LQEEevkLKAQVAR--------SQQDIERYKQ 497
Cdd:COG4913 501 ALrwVNRLHlrgrlvyERVRTGLP--DPERPRLDPDSLAGKLDFKPhpFRAW---LEAELGRrfdyvcvdSPEELRRHPR 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 498 QLSLAVERERSLERdqvqlgldwqRRCDD---IERDQI--QKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTl 572
Cdd:COG4913 576 AITRAGQVKGNGTR----------HEKDDrrrIRSRYVlgFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQ- 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 573 ERDQAVQALRMHG---LPRPGAQMLLRQHEEEISK-DFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQI--------- 639
Cdd:COG4913 645 ERREALQRLAEYSwdeIDVASAEREIAELEAELERlDASSDDLAALEEQLEELEAELEELEEELDELKGEIgrlekeleq 724
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217311169 640 --------------PPPIQTAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKHKFKTLEKHLEDVL 694
Cdd:COG4913 725 aeeeldelqdrleaAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAM 793
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
124-694 |
4.87e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.99 E-value: 4.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 124 AALQDTRSQLEEAQGKLRCLQEDFVyNLQVLEERdlELERYDAAFAQAREWEEARRAEVSElKIEAAKLRQALAREArkv 203
Cdd:pfam12128 244 TKLQQEFNTLESAELRLSHLHFGYK-SDETLIAS--RQEERQETSAELNQLLRTLDDQWKE-KRDELNGELSAADAA--- 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 204 eelqqqqqlaFQEHRLELERVHSDKNGEIDHHREQY----ENLKwTLERKLEELDGELALQ---RQELLLEFESKMRKRE 276
Cdd:pfam12128 317 ----------VAKDRSELEALEDQHGAFLDADIETAaadqEQLP-SWQSELENLEERLKALtgkHQDVTAKYNRRRSKIK 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 277 HEF-RLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLED 355
Cdd:pfam12128 386 EQNnRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQ 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 356 KLHSVQLTRKKEEETFKRKHEELdRLAREKdAVLVAVKGAHVEQLQELQTRVLELQAHCETLEAQLrraewrqadtakek 435
Cdd:pfam12128 466 LENFDERIERAREEQEAANAEVE-RLQSEL-RQARKRRDQASEALRQASRRLEERQSALDELELQL-------------- 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 436 DAAIDQLREDASTVKSAWDAQIAQL-SKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQV 514
Cdd:pfam12128 530 FPQAGTLLHFLRKEAPDWEQSIGKViSPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKA 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 515 QLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQAL--------QEQEVVLKAVTLERDQAVQALRMhgl 586
Cdd:pfam12128 610 EEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLrrlfdekqSEKDKKNKALAERKDSANERLNS--- 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 587 PRPGAQMLLRQHE---EEISKDFPSSEIQRL---REQNTSLRNAIAQMRKEMEALSHQipppiqtAAESTDA--NQPDPE 658
Cdd:pfam12128 687 LEAQLKQLDKKHQawlEEQKEQKREARTEKQaywQVVEGALDAQLALLKAAIAARRSG-------AKAELKAleTWYKRD 759
|
570 580 590
....*....|....*....|....*....|....*.
gi 2217311169 659 AGGDAATPDYVLALEAEIRTLKHKFKTLEKHLEDVL 694
Cdd:pfam12128 760 LASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVL 795
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
122-484 |
9.90e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 49.72 E-value: 9.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 122 QEAALQDTRSQLEEAQGKLRCLQEDFVYNLQVleeRDLELERYDAAFAQAREWEEARRAEVSELK--IEAAKLRQA-LAR 198
Cdd:pfam05483 416 EDEKLLDEKKQFEKIAEELKGKEQELIFLLQA---REKEIHDLEIQLTAIKTSEEHYLKEVEDLKteLEKEKLKNIeLTA 492
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 199 EARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKwTLERKLEELDGELALQRQELLL---EFESKMRKR 275
Cdd:pfam05483 493 HCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIE-NLEEKEMNLRDELESVREEFIQkgdEVKCKLDKS 571
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 276 EHEFRlqadNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAmsraRVKDLED 355
Cdd:pfam05483 572 EENAR----SIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEI----KVNKLEL 643
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 356 KLHSvqlTRKKEEETFK--RKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRV-LELQAHCETLEAQLRRAEWRQADTA 432
Cdd:pfam05483 644 ELAS---AKQKFEEIIDnyQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIdKRCQHKIAEMVALMEKHKHQYDKII 720
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 2217311169 433 KEKDAAIDQLR---EDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQ 484
Cdd:pfam05483 721 EERDSELGLYKnkeQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKME 775
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
246-471 |
1.08e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.63 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 246 LERKLEELDGELALQRQELLlEFESKMRkrehEFRLQadnmsNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATN 325
Cdd:COG3206 173 ARKALEFLEEQLPELRKELE-EAEAALE----EFRQK-----NGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 326 AELERKLQSRAGELQDLeaMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQT 405
Cdd:COG3206 243 AALRAQLGSGPDALPEL--LQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEA 320
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217311169 406 RVLELQAHCETLEAQLRRAEwRQADTAKEKDAAIDQLREDASTVKSAWDA-----QIAQLSKEMVSRDLQI 471
Cdd:COG3206 321 ELEALQAREASLQAQLAQLE-ARLAELPELEAELRRLEREVEVARELYESllqrlEEARLAEALTVGNVRV 390
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
231-649 |
1.23e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 1.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 231 EIDHHREQYENLKwTLERKLEELDGELALQRQELLlEFESKMRKREHEFRLQADNMSNTALSRELKvkLLHKELEALKEA 310
Cdd:COG4717 79 ELKEAEEKEEEYA-ELQEELEELEEELEELEAELE-ELREELEKLEKLLQLLPLYQELEALEAELA--ELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 311 GAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLV 390
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLEN 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 391 -AVKGAHVEQLQELQT-----------------------RVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDA 446
Cdd:COG4717 235 eLEAAALEERLKEARLllliaaallallglggsllslilTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALE 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 447 STVKSAWDAQIAQLS----------KEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLER--DQV 514
Cdd:COG4717 315 ELEEEELEELLAALGlppdlspeelLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAalEQA 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 515 QLGLDWQRRCDDIERDQIQKSEALIQGLSMA-KSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQM 593
Cdd:COG4717 395 EEYQELKEELEELEEQLEELLGELEELLEALdEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAEL 474
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 2217311169 594 LLRQHEEEiskdfpsSEIQRLREQNTSLRNAIAQMRKEMEALSHQIPPPIQTAAES 649
Cdd:COG4717 475 LQELEELK-------AELRELAEEWAALKLALELLEEAREEYREERLPPVLERASE 523
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
220-639 |
1.30e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.29 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 220 ELERVHSDKNGEIDHHREQYENLKWT------LERKLEELDGELAlQRQELLLEFESKMRKREHEFRLQADNMsntalsR 293
Cdd:PRK03918 211 EISSELPELREELEKLEKEVKELEELkeeieeLEKELESLEGSKR-KLEEKIRELEERIEELKKEIEELEEKV------K 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 294 ELK-VKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRaRVKDLEDKLhsVQLTRKKEE-ETF 371
Cdd:PRK03918 284 ELKeLKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEE-RLEELKKKL--KELEKRLEElEER 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 372 KRKHEELDRLAREKDAVLVAVKGAHVEQ----LQELQTRVLELQAHCETLEAQLRRAEWRqadtAKEKDAAIDQLR---- 443
Cdd:PRK03918 361 HELYEEAKAKKEELERLKKRLTGLTPEKlekeLEELEKAKEEIEEEISKITARIGELKKE----IKELKKAIEELKkakg 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 444 -----------EDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYK---------------- 496
Cdd:PRK03918 437 kcpvcgrelteEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKElaeqlkeleeklkkyn 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 497 -QQLSLAVERERSLERDQVQLGLDWQRRCDDIERDQ--IQKSEALIQGLSMAKSQVA------------------AKLQE 555
Cdd:PRK03918 517 lEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEelKKKLAELEKKLDELEEELAellkeleelgfesveeleERLKE 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 556 TEQ----------ALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQMLlRQHEEEISKDFPSSEIQRLREQNTSLRNAI 625
Cdd:PRK03918 597 LEPfyneylelkdAEKELEREEKELKKLEEELDKAFEELAETEKRLEEL-RKELEELEKKYSEEEYEELREEYLELSREL 675
|
490
....*....|....
gi 2217311169 626 AQMRKEMEALSHQI 639
Cdd:PRK03918 676 AGLRAELEELEKRR 689
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
226-707 |
2.25e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.58 E-value: 2.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 226 SDKNGEIDHHREQYENLKWTLERKLEELDGELALQRQELllefeSKMRKREHEFRLQADNMSNTALSRELKVKLLHKELE 305
Cdd:pfam15921 320 SDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSEL-----TEARTERDQFSQESGNLDDQLQKLLADLHKREKELS 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 306 ALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLhsvqltrKKEEETFKRKHEELDRlarek 385
Cdd:pfam15921 395 LEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQM-------ERQMAAIQGKNESLEK----- 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 386 davlVAVKGAHVEQLQELQTRVLE-LQAHCETLEAQLRRAEWRQAdTAKEKDAAIDQLREDASTVKSAWDAQIAQLsKEM 464
Cdd:pfam15921 463 ----VSSLTAQLESTKEMLRKVVEeLTAKKMTLESSERTVSDLTA-SLQEKERAIEATNAEITKLRSRVDLKLQEL-QHL 536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 465 VSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQL----SLAVERERSLERDQVQLGldwqrrcdDIERdQIQKSEALIQ 540
Cdd:pfam15921 537 KNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIenmtQLVGQHGRTAGAMQVEKA--------QLEK-EINDRRLELQ 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 541 GLSMAKSQVAAKLQETEQALQEQEvvlkavtLERDQAVQAlrmhglprpGAQMLlrqheeeiskdfpsSEIQRLREQNTS 620
Cdd:pfam15921 608 EFKILKDKKDAKIRELEARVSDLE-------LEKVKLVNA---------GSERL--------------RAVKDIKQERDQ 657
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 621 LRNAIAQMRKEMEALSHqipppiqtaaestdanqpdpeaggdaatpdyvlaleaEIRTLKHKFKTLEKHLEDVLDPLKMS 700
Cdd:pfam15921 658 LLNEVKTSRNELNSLSE-------------------------------------DYEVLKRNFRNKSEEMETTTNKLKMQ 700
|
....*..
gi 2217311169 701 SPHAESQ 707
Cdd:pfam15921 701 LKSAQSE 707
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
124-691 |
2.50e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.43 E-value: 2.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 124 AALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDleleRYDAAFAQAREWEEARRAEVSELkiEAAKLRQALAREARKV 203
Cdd:TIGR00618 222 QVLEKELKHLREALQQTQQSHAYLTQKREAQEEQL----KKQQLLKQLRARIEELRAQEAVL--EETQERINRARKAAPL 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 204 EELQQQQQLAFQEHRLELERVHSDKNgEIDHHREQYENLKWTLERKLEELDGELALQRQELLL------------EFESK 271
Cdd:TIGR00618 296 AAHIKAVTQIEQQAQRIHTELQSKMR-SRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIrdahevatsireISCQQ 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 272 MRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAM------ 345
Cdd:TIGR00618 375 HTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITctaqce 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 346 ---------SRARVKDLEDKLHSVQLTRKKEEET------FKRKHEELDRLAREK------DAVLVAVKGAHVEQLQELQ 404
Cdd:TIGR00618 455 klekihlqeSAQSLKEREQQLQTKEQIHLQETRKkavvlaRLLELQEEPCPLCGScihpnpARQDIDNPGPLTRRMQRGE 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 405 TRVLELQAHCETLEAQLrRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKL--- 481
Cdd:TIGR00618 535 QTYAQLETSEEDVYHQL-TSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLace 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 482 ------KAQVARSQQDIERYKQQLSLAVERER-SLERDQVQLGLDWQR----RCDDIERDQIQKSEALIQGLSMAKSQVA 550
Cdd:TIGR00618 614 qhallrKLQPEQDLQDVRLHLQQCSQELALKLtALHALQLTLTQERVRehalSIRVLPKELLASRQLALQKMQSEKEQLT 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 551 AKLQETEQ---ALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEISKDFPSS-EIQRLREQNTSLRNAIA 626
Cdd:TIGR00618 694 YWKEMLAQcqtLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVlKARTEAHFNNNEEVTAA 773
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217311169 627 QMRKEMEALSHQIPPPIQTAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKHKFKTLEKHLE 691
Cdd:TIGR00618 774 LQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLE 838
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
107-639 |
4.09e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 4.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 107 KEEEWRALQAHRTQLQE------AALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRA 180
Cdd:TIGR02169 313 KERELEDAEERLAKLEAeidkllAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 181 EVSELKIEaaklRQALAREARKVEELQQQQQLAFQEHRLELERVHSDKNgEIDHHREQYENLKWTLERKLEELdgelalq 260
Cdd:TIGR02169 393 KLEKLKRE----INELKRELDRLQEELQRLSEELADLNAAIAGIEAKIN-ELEEEKEDKALEIKKQEWKLEQL------- 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 261 rQELLLEFESKMRKREHEFRlqadnmsntALSRELKVklLHKELEALkEAGAKAAESLQRAEATNAE-LERKLQSRAGEL 339
Cdd:TIGR02169 461 -AADLSKYEQELYDLKEEYD---------RVEKELSK--LQRELAEA-EAQARASEERVRGGRAVEEvLKASIQGVHGTV 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 340 QDL-----------EAMSRAR-----VKDLEDKLHSVQL--TRKKEEETF------KRKHEELDRLArEKDAVLVAVKGA 395
Cdd:TIGR02169 528 AQLgsvgeryataiEVAAGNRlnnvvVEDDAVAKEAIELlkRRKAGRATFlplnkmRDERRDLSILS-EDGVIGFAVDLV 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 396 HVEQ---------------LQELQT-RVLELQAHCETLEAQLRraewrqadtakEKDAAI---DQLREDASTVKSAWDAQ 456
Cdd:TIGR02169 607 EFDPkyepafkyvfgdtlvVEDIEAaRRLMGKYRMVTLEGELF-----------EKSGAMtggSRAPRGGILFSRSEPAE 675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 457 IAQLSKEmvsrdlqIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRrcddiERDQIQKSE 536
Cdd:TIGR02169 676 LQRLRER-------LEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEK-----LKERLEELE 743
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 537 ALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQMllRQHEEEIS------------- 603
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAEL--SKLEEEVSriearlreieqkl 821
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 2217311169 604 ------KDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQI 639
Cdd:TIGR02169 822 nrltleKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKK 863
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
108-515 |
4.27e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.02 E-value: 4.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 108 EEEWRALQAHRTQLQEAALQdtRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREweearraEVSELKI 187
Cdd:COG3096 326 EQDYQAASDHLNLVQTALRQ--QEKIERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEE-------EVDSLKS 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 188 EAAKLRQALAREARKveelqqqqQLAFQEHRLELERVHSdKNGEIDHHREQYENLKWTLERKLEELDGELALQRQELLLe 267
Cdd:COG3096 397 QLADYQQALDVQQTR--------AIQYQQAVQALEKARA-LCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSV- 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 268 feSKMRKREHEFRLQAdnmsntalsrelkVKLLHKELEAlKEAGAKAAESLQRAeatnaeleRKLQSRAGELQDLeamsR 347
Cdd:COG3096 467 --ADAARRQFEKAYEL-------------VCKIAGEVER-SQAWQTARELLRRY--------RSQQALAQRLQQL----R 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 348 ARVKDLEDKLHSVQLTRKKEEETFKRKHEELDrlarekdavlvavkgaHVEQLQELQtrvLELQAHCETLEAQLRRAEWR 427
Cdd:COG3096 519 AQLAELEQRLRQQQNAERLLEEFCQRIGQQLD----------------AAEELEELL---AELEAQLEELEEQAAEAVEQ 579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 428 QADTAKEKDaaidqlredastvksawdaQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVAR---SQQDIERYKQQLsLAVE 504
Cdd:COG3096 580 RSELRQQLE-------------------QLRARIKELAARAPAWLAAQDALERLREQSGEalaDSQEVTAAMQQL-LERE 639
|
410
....*....|.
gi 2217311169 505 RERSLERDQVQ 515
Cdd:COG3096 640 REATVERDELA 650
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
300-467 |
4.48e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.07 E-value: 4.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 300 LHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLeamsRARVKDLEDKLHSVQLTR-----KKEEETFKRK 374
Cdd:COG1579 29 LPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEV----EARIKKYEEQLGNVRNNKeyealQKEIESLKRR 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 375 HEELDRLAREKDavlvavkgahvEQLQELQTRVLELQAHCETLEAQLRRAEwrqadtaKEKDAAIDQLREDASTVKSAWD 454
Cdd:COG1579 105 ISDLEDEILELM-----------ERIEELEEELAELEAELAELEAELEEKK-------AELDEELAELEAELEELEAERE 166
|
170
....*....|...
gi 2217311169 455 AQIAQLSKEMVSR 467
Cdd:COG1579 167 ELAAKIPPELLAL 179
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
287-520 |
4.71e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 4.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 287 SNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAmsraRVKDLEDKLHSVQLTRKK 366
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQ----ELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 367 EEETFKRKHEELDRLAR------EKDAVLVAVKGAHVEQ----LQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKd 436
Cdd:COG4942 95 LRAELEAQKEELAELLRalyrlgRQPPLALLLSPEDFLDavrrLQYLKYLAPARREQAEELRADLAELAALRAELEAER- 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 437 AAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQL 516
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKG 253
|
....
gi 2217311169 517 GLDW 520
Cdd:COG4942 254 KLPW 257
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
283-640 |
5.23e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.64 E-value: 5.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 283 ADNMSNTALSRELKVKLLHKElEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSrarvkdleDKLHSVQl 362
Cdd:COG3096 271 ADYMRHANERRELSERALELR-RELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAAS--------DHLNLVQ- 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 363 TRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHvEQLQELQTRVLELQAHCETLEAQL-----------RRA-EWRQAD 430
Cdd:COG3096 341 TALRQQEKIERYQEDLEELTERLEEQEEVVEEAA-EQLAEAEARLEAAEEEVDSLKSQLadyqqaldvqqTRAiQYQQAV 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 431 TAKEKdaAIDQLREDASTVKSAWDAQIAQLSKEmvsrDLQIQTLQEEEVKLK-AQVARSQQDiERYK--QQLSLAVERER 507
Cdd:COG3096 420 QALEK--ARALCGLPDLTPENAEDYLAAFRAKE----QQATEEVLELEQKLSvADAARRQFE-KAYElvCKIAGEVERSQ 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 508 SLERDQvQLGLDWqrrcddieRDQiqksEALIQGLSmaksQVAAKLQETEQALQEQEVVlkavtleRDQAVQALRMHGLP 587
Cdd:COG3096 493 AWQTAR-ELLRRY--------RSQ----QALAQRLQ----QLRAQLAELEQRLRQQQNA-------ERLLEEFCQRIGQQ 548
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 2217311169 588 RPGAQMLLRQHEE-EISKDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIP 640
Cdd:COG3096 549 LDAAEELEELLAElEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAP 602
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
108-518 |
7.42e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.04 E-value: 7.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 108 EEEWRALQAHRTQLQEAAlqDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRAEVSELKI 187
Cdd:pfam15921 447 ERQMAAIQGKNESLEKVS--SLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRS 524
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 188 EA-AKLR--QALAREARKVEELQQQQQLafqehrLELERVHSDKNGEIdhHREQYENLKWTLERKLEELDgelALQRQEL 264
Cdd:pfam15921 525 RVdLKLQelQHLKNEGDHLRNVQTECEA------LKLQMAEKDKVIEI--LRQQIENMTQLVGQHGRTAG---AMQVEKA 593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 265 LLEFESKMRKRE-HEFRLQADNmsNTALSRELKVKLLHKELEALK--EAGAKAAESLQRAEATNAELERKLQSRAGELQD 341
Cdd:pfam15921 594 QLEKEINDRRLElQEFKILKDK--KDAKIRELEARVSDLELEKVKlvNAGSERLRAVKDIKQERDQLLNEVKTSRNELNS 671
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 342 LEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRlAREKDAVLVAVKGAHVEQLQELQTRVLELQAHCETLEAQL 421
Cdd:pfam15921 672 LSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQ-TRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKI 750
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 422 RRAEWRQADTAKEKDAaidqLREDastvKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSL 501
Cdd:pfam15921 751 QFLEEAMTNANKEKHF----LKEE----KNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAE 822
|
410
....*....|....*..
gi 2217311169 502 AVERERSLERDQVQLGL 518
Cdd:pfam15921 823 CQDIIQRQEQESVRLKL 839
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
160-692 |
7.62e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.02 E-value: 7.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 160 ELERYDAAFAQAREWEEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERV--HSDKNGEIDHHRE 237
Cdd:pfam05483 100 ELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCarSAEKTKKYEYERE 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 238 QYENLKWTLERKLEELdgelalqrqelLLEFEskmrkrehEFRLQADNmsnTALSRELKVKLLHKELEALKEAGAKAAES 317
Cdd:pfam05483 180 ETRQVYMDLNNNIEKM-----------ILAFE--------ELRVQAEN---ARLEMHFKLKEDHEKIQHLEEEYKKEIND 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 318 LQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKlhsvqltRKKEEETFKRKHEELDRLAREKDAVLVAVK---- 393
Cdd:pfam05483 238 KEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEK-------TKLQDENLKELIEKKDHLTKELEDIKMSLQrsms 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 394 --GAHVEQLQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLskEMVSRDLQI 471
Cdd:pfam05483 311 tqKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQL--KIITMELQK 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 472 QTLQEEEV------------KLKAQVARSQQDIERYKQQLSLAVErersLERDQVQLGLDWQRRCDDIERDQIQksealI 539
Cdd:pfam05483 389 KSSELEEMtkfknnkeveleELKKILAEDEKLLDEKKQFEKIAEE----LKGKEQELIFLLQAREKEIHDLEIQ-----L 459
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 540 QGLSMAKSQVAAKLQETEQALQEQEvvLKAVTLERDQAVQALRMHGLPRPGAQMLL--RQHEEEISKDFPSSE-----IQ 612
Cdd:pfam05483 460 TAIKTSEEHYLKEVEDLKTELEKEK--LKNIELTAHCDKLLLENKELTQEASDMTLelKKHQEDIINCKKQEErmlkqIE 537
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 613 RLREQNTSLRNAIAQMRKEMEALSHQIPPPIQTAAESTDANQPDpeaggdaatpdyVLALEAEIRTLKHKFKTLEKHLED 692
Cdd:pfam05483 538 NLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYE------------VLKKEKQMKILENKCNNLKKQIEN 605
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
296-495 |
9.85e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.55 E-value: 9.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 296 KVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQD-LEAMsrarVKDLED------KLHSVQLTRKKEE 368
Cdd:PHA02562 196 QIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDeLLNL----VMDIEDpsaalnKLNTAAAKIKSKI 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 369 ETFKRKHEELdrlarEKDAVLVAVKGA---HVEQLQELQTRVLELQAHCETL-----EAQLRRAEWRQAD-TAKEKDAAI 439
Cdd:PHA02562 272 EQFQKVIKMY-----EKGGVCPTCTQQiseGPDRITKIKDKLKELQHSLEKLdtaidELEEIMDEFNEQSkKLLELKNKI 346
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2217311169 440 DQLREDAST-VKSAWDAQ--IAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERY 495
Cdd:PHA02562 347 STNKQSLITlVDKAKKVKaaIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHR 405
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
419-641 |
1.78e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 419 AQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQ 498
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 499 L--------SLAVERERSLERDQVQLGLDWQRRCDDIERDQIQKS-----EALIQGLSMAKSQVAAKLQETEQALQEQEV 565
Cdd:COG4942 99 LeaqkeelaELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYlaparREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217311169 566 VLKAVTLERDQAVQALRMHglprpgaQMLLRQHEEEISKDfpSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIPP 641
Cdd:COG4942 179 LLAELEEERAALEALKAER-------QKLLARLEKELAEL--AAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
100-582 |
5.85e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.19 E-value: 5.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 100 LNELLLRKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKLRCLQEDFVY-----NLQVLEERDLELERYDAAFAQAREW 174
Cdd:pfam02463 241 LLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLlakeeEELKSELLKLERRKVDDEEKLKESE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 175 EEARRAEVSELKIEAAKLRQ----ALAREARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKW------ 244
Cdd:pfam02463 321 KEKKKAEKELKKEKEEIEELekelKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEeelelk 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 245 -------TLERKLEELDGELALQRQELLLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLH---KELEALKEAGAKA 314
Cdd:pfam02463 401 seeekeaQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDElelKKSEDLLKETQLV 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 315 AESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKrkhEELDRLAREKDAVLVAVKG 394
Cdd:pfam02463 481 KLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAV---ENYKVAISTAVIVEVSATA 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 395 AHVEQLQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMvsrDLQIQTL 474
Cdd:pfam02463 558 DEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEG---ILKDTEL 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 475 QEEEVKLKAQVARSQQDIERykqQLSLAVERERSLERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQ 554
Cdd:pfam02463 635 TKLKESAKAKESGLRKGVSL---EEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEE 711
|
490 500
....*....|....*....|....*...
gi 2217311169 555 ETEQALQEQEVVLKAVTLERDQAVQALR 582
Cdd:pfam02463 712 LKKLKLEAEELLADRVQEAQDKINEELK 739
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
328-516 |
6.31e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 6.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 328 LERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQltrkKEEETFKRKHEELDrLAREKDAVLVAVKGAhVEQLQELQTRV 407
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAE----AALEEFRQKNGLVD-LSEEAKLLLQQLSEL-ESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 408 LELQAHCETLEAQLRRAEWRQADTAKekDAAIDQLREDASTVKsawdAQIAQLSK-------EMVSRDLQIQTLQEE--- 477
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPELLQ--SPVIQQLRAQLAELE----AELAELSArytpnhpDVIALRAQIAALRAQlqq 309
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2217311169 478 -----EVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQL 516
Cdd:COG3206 310 eaqriLASLEAELEALQAREASLQAQLAQLEARLAELPELEAEL 353
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
99-602 |
8.60e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.63 E-value: 8.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 99 ALNELLLRKEEEWRALQAHRTQLQeAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEAR 178
Cdd:pfam01576 500 SLQEQLEEEEEAKRNVERQLSTLQ-AQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRL 578
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 179 RAEVSELKIEAAKLRQ---ALAREARKVEELQQQQQLAFQEHRLELERVHSDKngeidhhREQyENLKWTLERKLEELDG 255
Cdd:pfam01576 579 QQELDDLLVDLDHQRQlvsNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEA-------REK-ETRALSLARALEEALE 650
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 256 ---ELALQRQELLLEFESKMR------KREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQraeATNA 326
Cdd:pfam01576 651 akeELERTNKQLRAEMEDLVSskddvgKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQ---ALKA 727
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 327 ELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAhVEQLQELQTR 406
Cdd:pfam01576 728 QFERDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDAANKGREEA-VKQLKKLQAQ 806
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 407 VLELQAHCEtlEAQLRRAEWRQADTAKEK-----DAAIDQLREDASTVKSA---WDAQIAQLSKEMVSRDLQIQTLQEEE 478
Cdd:pfam01576 807 MKDLQRELE--EARASRDEILAQSKESEKklknlEAELLQLQEDLAASERArrqAQQERDELADEIASGASGKSALQDEK 884
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 479 VKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRrcddiERDQIQKSEALIQGLSMAKSQVAAKLQETEQ 558
Cdd:pfam01576 885 RRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAA-----ERSTSQKSESARQQLERQNKELKAKLQEMEG 959
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 2217311169 559 ALQ-EQEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEI 602
Cdd:pfam01576 960 TVKsKFKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEKKL 1004
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
102-389 |
1.04e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.42 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 102 ELLLRKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAaFAQAREWEEARRAE 181
Cdd:pfam02463 728 QEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEK-EEKLKAQEEELRAL 806
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 182 VSELKIEAAKLRQalaREARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKWTLERKLEELDGELALQR 261
Cdd:pfam02463 807 EEELKEEAELLEE---EQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQK 883
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 262 QEL---LLEFESKMRKREHEFRLQADNMSNTALSR------ELKVKLLHKELEALKEAGAKAAEslQRAEATNAELERKL 332
Cdd:pfam02463 884 LKDeleSKEEKEKEEKKELEEESQKLNLLEEKENEieerikEEAEILLKYEEEPEELLLEEADE--KEKEENNKEEEEER 961
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 2217311169 333 QSRagELQDLEAMSRARVKDLEDKlhsvqltrKKEEETFKRKHEELDRLAREKDAVL 389
Cdd:pfam02463 962 NKR--LLLAKEELGKVNLMAIEEF--------EEKEERYNKDELEKERLEEEKKKLI 1008
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
105-348 |
1.26e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 105 LRKEEEWRALQAHRTQLqEAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERydaafaqarewEEARRAEVSE 184
Cdd:TIGR02169 290 LRVKEKIGELEAEIASL-ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEE-----------ERKRRDKLTE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 185 LKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSDKNgEIDHHREQYENLKWTLERKLEELDGELALQRQEl 264
Cdd:TIGR02169 358 EYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN-ELKRELDRLQEELQRLSEELADLNAAIAGIEAK- 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 265 LLEFESKMrkrehefrlqadnmsntaLSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEA 344
Cdd:TIGR02169 436 INELEEEK------------------EDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEA 497
|
....
gi 2217311169 345 MSRA 348
Cdd:TIGR02169 498 QARA 501
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
901-1097 |
1.62e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.00 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 901 RAELGRPERWLLHHALPPAPEARKPGEEPRRPLDRSPPLGQVQPhfTSQDAKSAEDEAPSRhLGKHQPRSAQTQHSIHTV 980
Cdd:PHA03247 2602 VDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPT--VPPPERPRDDPAPGR-VSRPRRARRLGRAAQASS 2678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 981 TCKSPRQKEDRSP--------KPPQAPQHPEEHGRQSHSSSsfasgtlqdmwrlldlgSSPSGVTSQGDSTPELPAPPAA 1052
Cdd:PHA03247 2679 PPQRPRRRAARPTvgsltslaDPPPPPPTPEPAPHALVSAT-----------------PLPPGPAAARQASPALPAAPAP 2741
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2217311169 1053 DRRPvkmqAGIATPGMKTAAQAKAKTTGASRSHPAKAKGCQRPPK 1097
Cdd:PHA03247 2742 PAVP----AGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRR 2782
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
133-461 |
1.74e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.65 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 133 LEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQArEWEEARRAEVSELKIEAAKLRQalarEARKVEELQQQQQL 212
Cdd:pfam02463 176 KKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQ-LKEKLELEEEYLLYLDYLKLNE----ERIDLLQELLRDEQ 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 213 AFQEHRLELERVHSDKNGEIDHHREQYENLKWTLERKLEELDGELALQRQELLLEfesKMRKREHEFRLQADNMSNTALS 292
Cdd:pfam02463 251 EEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKL---ERRKVDDEEKLKESEKEKKKAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 293 RELK-----VKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEdKLHSVQLTRKKE 367
Cdd:pfam02463 328 KELKkekeeIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKE-EELELKSEEEKE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 368 EETFKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRVLELQAHCETLEaqLRRAEWRQADTAKEKDAAIDQLREDAS 447
Cdd:pfam02463 407 AQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQE--LKLLKDELELKKSEDLLKETQLVKLQE 484
|
330
....*....|....
gi 2217311169 448 TVKSAWDAQIAQLS 461
Cdd:pfam02463 485 QLELLLSRQKLEER 498
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
131-587 |
1.98e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.20 E-value: 1.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 131 SQLEEAQGKLRCLQEDFVYNLQVLEERD------LELERYDAAFAQAREWEEARRAEVSELKIEAAKLRQALAREARKVE 204
Cdd:PRK01156 322 NKYHAIIKKLSVLQKDYNDYIKKKSRYDdlnnqiLELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQE 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 205 ELQQQQQLAFQEHRLELERVHSDK---NGEIDHHREQYENLkwtlERKLEELDGELALQRQELLLEFESKMRKREHefrl 281
Cdd:PRK01156 402 IDPDAIKKELNEINVKLQDISSKVsslNQRIRALRENLDEL----SRNMEMLNGQSVCPVCGTTLGEEKSNHIINH---- 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 282 qadnMSNTALSRELKVKLLHKELEALKEagaKAAESLQRAEATNAELERKLQSRAGELQDLeamsRARVKDLEDKLhsvq 361
Cdd:PRK01156 474 ----YNEKKSRLEEKIREIEIEVKDIDE---KIVDLKKRKEYLESEEINKSINEYNKIESA----RADLEDIKIKI---- 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 362 lTRKKEEETfkrKHEELDRlarekdavlvAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRAewRQADTAKEKDAAIDQ 441
Cdd:PRK01156 539 -NELKDKHD---KYEEIKN----------RYKSLKLEDLDSKRTSWLNALAVISLIDIETNRS--RSNEIKKQLNDLESR 602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 442 LREDAST---VKSAWDAQIAQLSKEMVSRDLQIQTLQEeevkLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLG- 517
Cdd:PRK01156 603 LQEIEIGfpdDKSYIDKSIREIENEANNLNNKYNEIQE----NKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINd 678
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217311169 518 ----LDWQR-RCDDIERDQIQKsEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTlERDQAVQALRMHGLP 587
Cdd:PRK01156 679 iednLKKSRkALDDAKANRARL-ESTIEILRTRINELSDRINDINETLESMKKIKKAIG-DLKRLREAFDKSGVP 751
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
105-360 |
2.22e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 2.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 105 LRKEEEWRALQAHRTQLQEAALQD--TRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRAEV 182
Cdd:TIGR02169 763 LEARIEELEEDLHKLEEALNDLEArlSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQR 842
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 183 SELKIEAAKLRQALArEARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYEN-------LKWTLERKlEELDG 255
Cdd:TIGR02169 843 IDLKEQIKSIEKEIE-NLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRElerkieeLEAQIEKK-RKRLS 920
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 256 ELALQRQELLLEFESKMRKREHEFRLQADNMSNTALsrELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSR 335
Cdd:TIGR02169 921 ELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDV--QAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKL 998
|
250 260
....*....|....*....|....*
gi 2217311169 336 AGELQDLeamsRARVKDLEDKLHSV 360
Cdd:TIGR02169 999 EEERKAI----LERIEEYEKKKREV 1019
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
434-582 |
2.56e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 2.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 434 EKDAAIDQLREDASTVK---SAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSlAVERERSLE 510
Cdd:COG1579 14 ELDSELDRLEHRLKELPaelAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLG-NVRNNKEYE 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217311169 511 RDQVQLgldwqrrcdDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALR 582
Cdd:COG1579 93 ALQKEI---------ESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELE 155
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
428-678 |
3.03e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 3.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 428 QADT-AKEKDAAIDQLREDASTVKS---AWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSlav 503
Cdd:COG3883 13 FADPqIQAKQKELSELQAELEAAQAeldALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELG--- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 504 ERERSLERDQVQLGL-----------DWQRRCDDIER------DQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVV 566
Cdd:COG3883 90 ERARALYRSGGSVSYldvllgsesfsDFLDRLSALSKiadadaDLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 567 LKAvtLERDQAVQALRMHGLPRPGAQMLLRQHEEEISKDFPSSEIQRLREQNTSLRNAIAQMRKEMEALshQIPPPIQTA 646
Cdd:COG3883 170 KAE--LEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAA--AAAAAAAAS 245
|
250 260 270
....*....|....*....|....*....|..
gi 2217311169 647 AESTDANQPDPEAGGDAATPDYVLALEAEIRT 678
Cdd:COG3883 246 AAGAGAAGAAGAAAGSAGAAGAAAGAAGAGAA 277
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
474-636 |
3.32e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 3.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 474 LQEEEVKLKAQVARSQQDIERYKQ---------QLSLAVERERSLERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSM 544
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEFRQknglvdlseEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 545 AKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRmhglprpgAQM--LLRQHEEEISKDFPS--SEIQRLREQNTS 620
Cdd:COG3206 260 LQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALR--------AQIaaLRAQLQQEAQRILASleAELEALQAREAS 331
|
170
....*....|....*.
gi 2217311169 621 LRNAIAQMRKEMEALS 636
Cdd:COG3206 332 LQAQLAQLEARLAELP 347
|
|
| ASY3-like |
pfam20435 |
Meiosis-specific protein ASY3-like; This entry represents a group of plant meiosis-specific ... |
145-303 |
4.69e-03 |
|
Meiosis-specific protein ASY3-like; This entry represents a group of plant meiosis-specific proteins, such as AtASY3 from Arabidopsis and PAIR3 from rice. They are coiled-coil domain proteins required for normal meiosis. PAIR3 is an axial element and part of the synaptonemal complex (SC) that forms between homologous chromosomes during meiosis. Members of this family are homologs of SCYP2 from vertebrates and fungal Red1/Rec10.
Pssm-ID: 466584 [Multi-domain] Cd Length: 793 Bit Score: 41.02 E-value: 4.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 145 EDFVYNLQVLEERDLELERYDAAFAQA--------REWEEARRAEV-----SELKIEAAKLRQALAREARKV----EELQ 207
Cdd:pfam20435 610 DSFQHCSEMDEDEDEGLGRAVALFAMAlqnferklKSAAEKKSSEIiasvsEEIHLELENIKSHIITEAGKTsnlaKTKR 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 208 QQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKWTLERKLEELDGELALQR---QELLLEFESKMRKREHEFRLQAD 284
Cdd:pfam20435 690 KHAETRLQEQEEKMRMIHEKFKDDVSHHLEDFKSTIEELEANQSELKGSIKKQRtshQKLIAHFEGGIETKLDDATKRID 769
|
170
....*....|....*....
gi 2217311169 285 NMSNTALSRELKVKLLHKE 303
Cdd:pfam20435 770 SVNKSARGKMLQLKMIVAE 788
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
58-517 |
4.91e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.11 E-value: 4.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 58 AHEQSVLPQTRRVSFGSVPTPPAWREVRPQAATMLPLGSEPALNELLLRKEEEWRALQAHRTQLQEAALQDTRSQLEEAQ 137
Cdd:TIGR00618 409 QATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRK 488
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 138 GKLRclqEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRAEVSELKIEAAKLRQALArEARKVEELQQQQQLAFQEH 217
Cdd:TIGR00618 489 KAVV---LARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEE-DVYHQLTSERKQRASLKEQ 564
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 218 RLELERVHSDKNGEIDHHREQYENLKWTLERKLEELDGELALQRQeLLLEFESKMRKREHEFRLQADNMSNTALSRELKV 297
Cdd:TIGR00618 565 MQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDM-LACEQHALLRKLQPEQDLQDVRLHLQQCSQELAL 643
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 298 KLLHKELEALKEAGAKAAESLQRaeaTNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEetfkrKHEE 377
Cdd:TIGR00618 644 KLTALHALQLTLTQERVREHALS---IRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELET-----HIEE 715
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 378 LDRLAREkdavlvavkgahveQLQELQTRVLELQAHCETLEAQLRRAEwRQADTAKEKDAAIDQLREDASTVKSAWDAQI 457
Cdd:TIGR00618 716 YDREFNE--------------IENASSSLGSDLAAREDALNQSLKELM-HQARTVLKARTEAHFNNNEEVTAALQTGAEL 780
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217311169 458 AQLSKEMVSRDLQIQTLQEEEVKLKAQ---------------VARSQQDIERYKQQLSLAVERERSLERDQVQLG 517
Cdd:TIGR00618 781 SHLAAEIQFFNRLREEDTHLLKTLEAEigqeipsdedilnlqCETLVQEEEQFLSRLEEKSATLGEITHQLLKYE 855
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
398-578 |
5.58e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.77 E-value: 5.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 398 EQLQELQTRVLELQAHCETLEAQ---LRRAEWRQADTAKEKDAAIDQLREDASTVKSAWD---AQIAQLSKEMVSRDLQI 471
Cdd:PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYnknIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEeltDELLNLVMDIEDPSAAL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 472 QTLQEEEVKLKAQVARSQQDIERY---------KQQLSLAVERERSLERDQVQLgldwQRRCDDIE--RDQIQKSEALIQ 540
Cdd:PHA02562 258 NKLNTAAAKIKSKIEQFQKVIKMYekggvcptcTQQISEGPDRITKIKDKLKEL----QHSLEKLDtaIDELEEIMDEFN 333
|
170 180 190
....*....|....*....|....*....|....*...
gi 2217311169 541 GLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAV 578
Cdd:PHA02562 334 EQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ 371
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
220-510 |
5.66e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.77 E-value: 5.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 220 ELERVHSDKNGEIDHHREQYENLKWTLERKLEELDgELALQRQELllefESKMRKREHEfrlqadnmsNTALSRELKVK- 298
Cdd:TIGR04523 353 NSESENSEKQRELEEKQNEIEKLKKENQSYKQEIK-NLESQINDL----ESKIQNQEKL---------NQQKDEQIKKLq 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 299 ----LLHKELEALKEAGAKAAESLQRAEATNAELERKLQsragELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRK 374
Cdd:TIGR04523 419 qekeLLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIK----NLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSK 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 375 HEELDRLAREKDAVlvavkgahVEQLQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQL-REDASTVKSAW 453
Cdd:TIGR04523 495 EKELKKLNEEKKEL--------EEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELkKENLEKEIDEK 566
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217311169 454 DAQIAQLSKEMVS-------RDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLE 510
Cdd:TIGR04523 567 NKEIEELKQTQKSlkkkqeeKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLS 630
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
278-699 |
7.12e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.39 E-value: 7.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 278 EFRLQADNMSNtalsRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKL 357
Cdd:TIGR04523 111 EIKNDKEQKNK----LEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQ 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 358 HSVQLTRKKE--EETFKRKHEELDRLAREKDAVLVAVKgahvEQLQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEK 435
Cdd:TIGR04523 187 KNIDKIKNKLlkLELLLSNLKKKIQKNKSLESQISELK----KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQ 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 436 DAAIDQLREDASTVKSAwDAQIAQLSKEMVSRDLQIQTL-------------------QEEEVKLKAQVARSQQDIERYK 496
Cdd:TIGR04523 263 NKIKKQLSEKQKELEQN-NKKIKELEKQLNQLKSEISDLnnqkeqdwnkelkselknqEKKLEEIQNQISQNNKIISQLN 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 497 QQLSlavererSLERDQVQLGLDWQRRCDDIER--DQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKavtlER 574
Cdd:TIGR04523 342 EQIS-------QLKKELTNSESENSEKQRELEEkqNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQ----QK 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 575 DQAVQALRmhglprpgaqmllrQHEEEISKdfpssEIQRLREQNTSLRNAIAQMRKEMEALSHQIpppiqtaaESTDANQ 654
Cdd:TIGR04523 411 DEQIKKLQ--------------QEKELLEK-----EIERLKETIIKNNSEIKDLTNQDSVKELII--------KNLDNTR 463
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 2217311169 655 PDPEaggdaatpDYVLALEAEIRTLKHKFKTLEKHLEDVLDPLKM 699
Cdd:TIGR04523 464 ESLE--------TQLKVLSRSINKIKQNLEQKQKELKSKEKELKK 500
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
304-580 |
7.59e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 7.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 304 LEALKEAGAKAAESLQRAEAT--NAELERK---------------LQSRAGELQD-LEAMSRARVKDLEDKLHSVQLtrK 365
Cdd:COG3096 363 LEEQEEVVEEAAEQLAEAEARleAAEEEVDslksqladyqqaldvQQTRAIQYQQaVQALEKARALCGLPDLTPENA--E 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 366 KEEETFKRKHEELDRL---AREKDAVLVAVKGAHVEQLQELQTRVLEL---QAHcETLEAQLRRaeWR----QADTAKEK 435
Cdd:COG3096 441 DYLAAFRAKEQQATEEvleLEQKLSVADAARRQFEKAYELVCKIAGEVersQAW-QTARELLRR--YRsqqaLAQRLQQL 517
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 436 DAAIDQLREDASTVKSAwDAQIAQLSKEMvSRDLQIQTLQEEEVklkaqvARSQQDIERYKQQLSLAVERERSLERDQVQ 515
Cdd:COG3096 518 RAQLAELEQRLRQQQNA-ERLLEEFCQRI-GQQLDAAEELEELL------AELEAQLEELEEQAAEAVEQRSELRQQLEQ 589
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217311169 516 LGLDwQRRCDDIERDQIQKSEALIQgLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQA 580
Cdd:COG3096 590 LRAR-IKELAARAPAWLAAQDALER-LREQSGEALADSQEVTAAMQQLLEREREATVERDELAAR 652
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
152-387 |
7.76e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 7.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 152 QVLEERDLELERYDAAFAQAREWEEARRAEVSELKIEAAKLRQALAREARKVEelqqqqqlAFQEHRLELERVHSDKNGE 231
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR--------ALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 232 IDHHREQYENLKWTLERKLEELDGELALQRQELLLEFESKMRKREHEFRLQADNMSNTALSRELKVKLlhKELEALKEAG 311
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADL--AELAALRAEL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217311169 312 AKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDA 387
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
99-534 |
8.16e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.21 E-value: 8.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 99 ALNELLLRKEEEWRALQAHRTQ---LQEAALQDTRSQLEEAQGKLRCLQEDFVynlqvlEERDLELERYDAAFAQAREWE 175
Cdd:pfam12128 287 ELNQLLRTLDDQWKEKRDELNGelsAADAAVAKDRSELEALEDQHGAFLDADI------ETAAADQEQLPSWQSELENLE 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 176 EARRA-EVSELKIEAAKLRQALARE---ARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKWTL---ER 248
Cdd:pfam12128 361 ERLKAlTGKHQDVTAKYNRRRSKIKeqnNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFneeEY 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 249 KLEELDGELALQRQELLLEFESKMRKREHEFRLqaDNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEatnael 328
Cdd:pfam12128 441 RLKSRLGELKLRLNQATATPELLLQLENFDERI--ERAREEQEAANAEVERLQSELRQARKRRDQASEALRQAS------ 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 329 eRKLQSRAGELQDLEAMS-----------RARVKDLEDKLHSV----QLTR-----------KKEEETFKRKHEELDR-- 380
Cdd:pfam12128 513 -RRLEERQSALDELELQLfpqagtllhflRKEAPDWEQSIGKVispeLLHRtdldpevwdgsVGGELNLYGVKLDLKRid 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 381 ----------LAREKDAVLVAVKGAHvEQLQELQTRVLELQAHCETLEAQLRRAewRQADTAKEKDAA--IDQLREDAST 448
Cdd:pfam12128 592 vpewaaseeeLRERLDKAEEALQSAR-EKQAAAEEQLVQANGELEKASREETFA--RTALKNARLDLRrlFDEKQSEKDK 668
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 449 VKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIE 528
Cdd:pfam12128 669 KNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAE 748
|
....*.
gi 2217311169 529 RDQIQK 534
Cdd:pfam12128 749 LKALET 754
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
300-513 |
8.19e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.14 E-value: 8.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 300 LHKELEAL-KEAGAKAAESLQRAEATNAELeRKLQSRAGELQDLeamsRARVKDLEDKLHSVQltrkKEEETFKRKHEEL 378
Cdd:COG4717 51 LEKEADELfKPQGRKPELNLKELKELEEEL-KEAEEKEEEYAEL----QEELEELEEELEELE----AELEELREELEKL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 379 DRLAREKDavLVAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRAEWRQADtAKEKDAAIDQLREDASTVKSawdaqia 458
Cdd:COG4717 122 EKLLQLLP--LYQELEALEAELAELPERLEELEERLEELRELEEELEELEAE-LAELQEELEELLEQLSLATE------- 191
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2217311169 459 qlsKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQ 513
Cdd:COG4717 192 ---EELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEE 243
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
94-516 |
8.48e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 40.11 E-value: 8.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 94 LGSEPALNELLLRKEEEWRALQAHRTQLQE--AALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQA 171
Cdd:pfam05557 23 LEHKRARIELEKKASALKRQLDRESDRNQElqKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEKESQLADA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 172 REWEEARRAEVSELKIEAAKLRQALAREARKVEELQqqqqlafQEHRLELERVhsdkngeidhhrEQYENLKWTLERKle 251
Cdd:pfam05557 103 REVISCLKNELSELRRQIQRAELELQSTNSELEELQ-------ERLDLLKAKA------------SEAEQLRQNLEKQ-- 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 252 eldgelalqrQELLLEFESKMRKREHEFRLQADN--MSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELE 329
Cdd:pfam05557 162 ----------QSSLAEAEQRIKELEFEIQSQEQDseIVKNSKSELARIPELEKELERLREHNKHLNENIENKLLLKEEVE 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 330 rKLQSRAGELQDleamSRARVKDLEDKLHSVQLTRKKEEETFKRKHEEL---DRLARE------KDAVLVAVKGAHVEQL 400
Cdd:pfam05557 232 -DLKRKLEREEK----YREEAATLELEKEKLEQELQSWVKLAQDTGLNLrspEDLSRRieqlqqREIVLKEENSSLTSSA 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 401 QELQTRVLELQAHC--------------ETLEAQLRRAEWRQADTAKEKD---AAIDQLREDASTVKSAwdaqiAQLSKE 463
Cdd:pfam05557 307 RQLEKARRELEQELaqylkkiedlnkklKRHKALVRRLQRRVLLLTKERDgyrAILESYDKELTMSNYS-----PQLLER 381
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 2217311169 464 MVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSlAVERERSLERDQVQL 516
Cdd:pfam05557 382 IEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQ-TLERELQALRQQESL 433
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
462-633 |
8.61e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 8.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 462 KEMVSRDLQIQTLQEEEVKLKAQVARSQQDIerYKQQLSLAVERERSLER---------------DQVQLGLDWQRRCDD 526
Cdd:pfam17380 305 KEEKAREVERRRKLEEAEKARQAEMDRQAAI--YAEQERMAMERERELERirqeerkrelerirqEEIAMEISRMRELER 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 527 IERDQIQKSEALIQGLSMAKSQvaaKLQETE--QALQEQEVVLKAVTLERDQAVQaLRMHGLPRPGAQMLLRQHEEEISK 604
Cdd:pfam17380 383 LQMERQQKNERVRQELEAARKV---KILEEErqRKIQQQKVEMEQIRAEQEEARQ-REVRRLEEERAREMERVRLEEQER 458
|
170 180
....*....|....*....|....*....
gi 2217311169 605 dfpSSEIQRLREQNTSLRNAIAQMRKEME 633
Cdd:pfam17380 459 ---QQQVERLRQQEEERKRKKLELEKEKR 484
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
320-512 |
9.48e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 39.88 E-value: 9.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 320 RAEATNAELERKLQSRAGELQDLEAmsrarvkdledklhsVQLTRKKEEETFKRKHEELDRLAREKDavlvavkgahvEQ 399
Cdd:pfam07888 28 RAELLQNRLEECLQERAELLQAQEA---------------ANRQREKEKERYKRDREQWERQRRELE-----------SR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311169 400 LQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDaQIAQLSKEMVSRDLQIQTLQEEEV 479
Cdd:pfam07888 82 VAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELEE-DIKTLTQRVLERETELERMKERAK 160
|
170 180 190
....*....|....*....|....*....|...
gi 2217311169 480 KLKAQVARSQQDIERYKQQLSLAVERERSLERD 512
Cdd:pfam07888 161 KAGAQRKEEEAERKQLQAKLQQTEEELRSLSKE 193
|
|
| |
