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Conserved domains on  [gi|2287779844|ref|XP_049990016|]
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zinc finger protein 54-like, partial [Alexandromys fortis]

Protein Classification

C2H2-type zinc finger protein( domain architecture ID 11472214)

Cys2His2 (C2H2)-type zinc finger protein may be involved in transcriptional regulation

CATH:  3.30.160.60
Gene Ontology:  GO:0008270|GO:0003677
PubMed:  11361095|22803940
SCOP:  4003583

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
57-349 2.52e-06

FOG: Zn-finger [General function prediction only];


:

Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 48.92  E-value: 2.52e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287779844  57 KSFSTALSLTVHQRIHTGEKPYKCQECNKSFTVKSTLTKHQRIHTGKKPYKCN----ICDKSFTQCSSLKTHQRLHTGEK 132
Cdd:COG5048   178 KDPSSNLSLLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTtnsqLSPKSLLSQSPSSLSSSDSSSSA 257

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287779844 133 PYKCRECG--KSFHQSSALKSHQNMHTG-EKPYKCKECDKSFAHYSNFRRHQ--KIHTTEKHYRCQE----CGRVFHWLS 203
Cdd:COG5048   258 SESPRSSLptASSQSSSPNESDSSSEKGfSLPIKSKQCNISFSRSSPLTRHLrsVNHSGESLKPFSCpyslCGKLFSRND 337

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287779844 204 HLRRHYRLHTGEKPYKCNDCDSSFTHYSSFRrhqkthsleelyeckecGKSFLDLSHLKRHHLIHTGEKPYRCevCDKSF 283
Cdd:COG5048   338 ALKRHILLHTSISPAKEKLLNSSSKFSPLLN-----------------NEPPQSLQQYKDLKNDKKSETLSNS--CIRNF 398

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2287779844 284 TLNSTLRRHHKIHTGEKPY--KCEVCDKSFSVISNLRNHQKIHTGEKLYKCRQCSKSFSQDSYLRIHQ 349
Cdd:COG5048   399 KRDSNLSLHIITHLSFRPYncKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDLDLSNHGK 466
 
Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
57-349 2.52e-06

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 48.92  E-value: 2.52e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287779844  57 KSFSTALSLTVHQRIHTGEKPYKCQECNKSFTVKSTLTKHQRIHTGKKPYKCN----ICDKSFTQCSSLKTHQRLHTGEK 132
Cdd:COG5048   178 KDPSSNLSLLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTtnsqLSPKSLLSQSPSSLSSSDSSSSA 257

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287779844 133 PYKCRECG--KSFHQSSALKSHQNMHTG-EKPYKCKECDKSFAHYSNFRRHQ--KIHTTEKHYRCQE----CGRVFHWLS 203
Cdd:COG5048   258 SESPRSSLptASSQSSSPNESDSSSEKGfSLPIKSKQCNISFSRSSPLTRHLrsVNHSGESLKPFSCpyslCGKLFSRND 337

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287779844 204 HLRRHYRLHTGEKPYKCNDCDSSFTHYSSFRrhqkthsleelyeckecGKSFLDLSHLKRHHLIHTGEKPYRCevCDKSF 283
Cdd:COG5048   338 ALKRHILLHTSISPAKEKLLNSSSKFSPLLN-----------------NEPPQSLQQYKDLKNDKKSETLSNS--CIRNF 398

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2287779844 284 TLNSTLRRHHKIHTGEKPY--KCEVCDKSFSVISNLRNHQKIHTGEKLYKCRQCSKSFSQDSYLRIHQ 349
Cdd:COG5048   399 KRDSNLSLHIITHLSFRPYncKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDLDLSNHGK 466
zf-H2C2_2 pfam13465
Zinc-finger double domain;
148-173 1.81e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.42  E-value: 1.81e-03
                          10        20
                  ....*....|....*....|....*.
gi 2287779844 148 ALKSHQNMHTGEKPYKCKECDKSFAH 173
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
SUF4-like cd20908
N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), ...
 76-128 5.88e-03

N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Oryza sativa SUPPRESSOR OF FRI 4 (OsSUF4) is a C2H2-type zinc finger transcription factor which interacts with the major H3K36 methyltransferase SDG725 to promote H3K36me3 (tri-methylation at H3K9) establishment. The transcription factor OsSUF4 recognizes a specific 7-bp DNA element (5'-CGGAAAT-3'), which is contained in the promoter regions of many genes throughout the rice genome. Through interaction with OsSUF4, SDG725 is recruited to the promoters of key florigen genes, RICE FLOWERING LOCUS T1 (RFT1) and Heading date 3a (Hd3a), for H3K36 deposition to promote gene activation and rice plant flowering. OsSUF4 target genes include a number of genes involved in many biological processes. Flowering plant Arabidopsis SUF4 binds to a 15bp DNA element (5'-CCAAATTTTAAGTTT-3') within the promoter of the floral repressor gene FLOWERING LOCUS C (FLC) and recruits the FRI-C transcription activator complex to the FLC promoter. Although the DNA-binding element and target genes of AtSUF4 are different from those of OsSUF4, AtSUF4 is known to interact with the Arabidopsis H3K36 methyltransferase SDG8 (also known as ASHH2/EFS/SET8), and the methylation deposition mechanism mediated by the SUF4 transcription factor and H3K36 methyltransferase may be conserved in Arabidopsis and rice. Proteins in this family have two conserved C2H2-type zinc finger motifs at the N-terminus (included in this model), and a large proline-rich domain at the C-terminus; for OsSUF4, it has been shown that the N-terminal zinc-finger domain is responsible for DNA binding, and that the C-terminal domain interacts with SDG725.


Pssm-ID: 411020 [Multi-domain]  Cd Length: 82  Bit Score: 35.22  E-value: 5.88e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2287779844  76 KPYkCQECNKSFTVKSTLTKHQRIHTgkkpYKCNICDKSFTQCSSLKTH-QRLH 128
Cdd:cd20908     1 KPW-CYYCDREFDDEKILIQHQKAKH----FKCHICHKKLYTAGGLAVHcLQVH 49
 
Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
57-349 2.52e-06

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 48.92  E-value: 2.52e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287779844  57 KSFSTALSLTVHQRIHTGEKPYKCQECNKSFTVKSTLTKHQRIHTGKKPYKCN----ICDKSFTQCSSLKTHQRLHTGEK 132
Cdd:COG5048   178 KDPSSNLSLLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTtnsqLSPKSLLSQSPSSLSSSDSSSSA 257

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287779844 133 PYKCRECG--KSFHQSSALKSHQNMHTG-EKPYKCKECDKSFAHYSNFRRHQ--KIHTTEKHYRCQE----CGRVFHWLS 203
Cdd:COG5048   258 SESPRSSLptASSQSSSPNESDSSSEKGfSLPIKSKQCNISFSRSSPLTRHLrsVNHSGESLKPFSCpyslCGKLFSRND 337

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287779844 204 HLRRHYRLHTGEKPYKCNDCDSSFTHYSSFRrhqkthsleelyeckecGKSFLDLSHLKRHHLIHTGEKPYRCevCDKSF 283
Cdd:COG5048   338 ALKRHILLHTSISPAKEKLLNSSSKFSPLLN-----------------NEPPQSLQQYKDLKNDKKSETLSNS--CIRNF 398

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2287779844 284 TLNSTLRRHHKIHTGEKPY--KCEVCDKSFSVISNLRNHQKIHTGEKLYKCRQCSKSFSQDSYLRIHQ 349
Cdd:COG5048   399 KRDSNLSLHIITHLSFRPYncKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDLDLSNHGK 466
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
31-352 4.64e-06

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 48.15  E-value: 4.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287779844  31 HFSSTYNGLQQKFCIGEKPHQCGKCGKSFSTALSLTVHQRIHTGEKPYKC--QECNKSFTVKSTLTKHQRIHTGKKPYKC 108
Cdd:COG5048    15 VLSSTPKSTLKSLSNAPRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCsySGCDKSFSRPLELSRHLRTHHNNPSDLN 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287779844 109 NICDKS--FTQCSSLKTHQRLHTgekPYKCRECGKSFHQSSALKSHQNMHTGEKPYKCKEcdksfaHYSNFRRHQKIHTT 186
Cdd:COG5048    95 SKSLPLsnSKASSSSLSSSSSNS---NDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPL------PGNNSSSVNTPQSN 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287779844 187 EKHYRCQECGRVFHWLSHLRRHY--RLHTGEKPYKCNDCDSSFTHYSSFRRHQKTHSLEELY------------------ 246
Cdd:COG5048   166 SLHPPLPANSLSKDPSSNLSLLIssNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLplttnsqlspksllsqsp 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287779844 247 ----------ECKECGKSFLDLSHLKRHHLIHTGE-------KPYRCEVCDKSFTLNSTLRRH--HKIHTGE--KPYKC- 304
Cdd:COG5048   246 sslsssdsssSASESPRSSLPTASSQSSSPNESDSssekgfsLPIKSKQCNISFSRSSPLTRHlrSVNHSGEslKPFSCp 325

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2287779844 305 -EVCDKSFSVISNLRNHQKIHTGEKLYKC--RQCSKSFSQDSYLRIHQRIH 352
Cdd:COG5048   326 ySLCGKLFSRNDALKRHILLHTSISPAKEklLNSSSKFSPLLNNEPPQSLQ 376
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 102-182 5.24e-06

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 47.79  E-value: 5.24e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287779844 102 GKKPYKCNI--CDKSFTQCSSLKTHqRLHTgekpykcrECGKSFHQSSALKSHQNMHTGEKPYKCKECDKSFAHYSNFRR 179
Cdd:COG5189   346 DGKPYKCPVegCNKKYKNQNGLKYH-MLHG--------HQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKY 416


                  ...
gi 2287779844 180 HQK 182
Cdd:COG5189   417 HRK 419
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
109-357 1.67e-05

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 46.61  E-value: 1.67e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287779844 109 NICDKSFTQCSSLKTHQRLHTGEKPYKCRECGKSFHQSSALKSHQNMHTGEKPYKCKECDKSFAHYSNFRRHQKIHTTEK 188
Cdd:COG5048   174 NSLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSDS 253

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287779844 189 HYRCQECGRVF--HWLSHLRRHYRLHTGE-----KPYKCNDCDSSFTHYSSFRRHQKT--HSLEELYECKE----CGKSF 255
Cdd:COG5048   254 SSSASESPRSSlpTASSQSSSPNESDSSSekgfsLPIKSKQCNISFSRSSPLTRHLRSvnHSGESLKPFSCpyslCGKLF 333

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287779844 256 LDLSHLKRHHLIHTGEKPYRC--EVCDKSFTLNSTLRRH--HKIHTGEKPYKCEVCDKSFSVISNLRNH-------QKIH 324
Cdd:COG5048   334 SRNDALKRHILLHTSISPAKEklLNSSSKFSPLLNNEPPqsLQQYKDLKNDKKSETLSNSCIRNFKRDSnlslhiiTHLS 413

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2287779844 325 TGEKLYKCRQCSKSFSQDSYLRIHQRIHTGERP 357
Cdd:COG5048   414 FRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAP 446
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 270-322 6.24e-05

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 44.71  E-value: 6.24e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2287779844 270 GEKPYRCEV--CDKSFTlNSTLRRHHKIH--------------------TGEKPYKCEVCDKSFSVISNLRNHQK 322
Cdd:COG5189   346 DGKPYKCPVegCNKKYK-NQNGLKYHMLHghqnqklhenpspekmnifsAKDKPYRCEVCDKRYKNLNGLKYHRK 419
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 214-294 5.23e-04

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 41.63  E-value: 5.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287779844 214 GEKPYKCN--DCDSSFTHYSSFRRHQKT-HSLEELYECKECGKsfldlshlkrHHLIHTGEKPYRCEVCDKSFTLNSTLR 290
Cdd:COG5189   346 DGKPYKCPveGCNKKYKNQNGLKYHMLHgHQNQKLHENPSPEK----------MNIFSAKDKPYRCEVCDKRYKNLNGLK 415


                  ....
gi 2287779844 291 RHHK 294
Cdd:COG5189   416 YHRK 419
zf-H2C2_2 pfam13465
Zinc-finger double domain;
148-173 1.81e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.42  E-value: 1.81e-03
                          10        20
                  ....*....|....*....|....*.
gi 2287779844 148 ALKSHQNMHTGEKPYKCKECDKSFAH 173
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_2 pfam13465
Zinc-finger double domain;
289-312 1.84e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.42  E-value: 1.84e-03
                          10        20
                  ....*....|....*....|....
gi 2287779844 289 LRRHHKIHTGEKPYKCEVCDKSFS 312
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFK 25
zf-H2C2_2 pfam13465
Zinc-finger double domain;
204-229 3.23e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 34.65  E-value: 3.23e-03
                          10        20
                  ....*....|....*....|....*.
gi 2287779844 204 HLRRHYRLHTGEKPYKCNDCDSSFTH 229
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_2 pfam13465
Zinc-finger double domain;
260-284 3.74e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 34.65  E-value: 3.74e-03
                          10        20
                  ....*....|....*....|....*
gi 2287779844 260 HLKRHHLIHTGEKPYRCEVCDKSFT 284
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFK 25
zf-H2C2_2 pfam13465
Zinc-finger double domain;
120-143 5.27e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 33.88  E-value: 5.27e-03
                          10        20
                  ....*....|....*....|....
gi 2287779844 120 SLKTHQRLHTGEKPYKCRECGKSF 143
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSF 24
zf-H2C2_2 pfam13465
Zinc-finger double domain;
93-117 5.38e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 33.88  E-value: 5.38e-03
                          10        20
                  ....*....|....*....|....*
gi 2287779844  93 LTKHQRIHTGKKPYKCNICDKSFTQ 117
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFKS 26
SUF4-like cd20908
N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), ...
 76-128 5.88e-03

N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Oryza sativa SUPPRESSOR OF FRI 4 (OsSUF4) is a C2H2-type zinc finger transcription factor which interacts with the major H3K36 methyltransferase SDG725 to promote H3K36me3 (tri-methylation at H3K9) establishment. The transcription factor OsSUF4 recognizes a specific 7-bp DNA element (5'-CGGAAAT-3'), which is contained in the promoter regions of many genes throughout the rice genome. Through interaction with OsSUF4, SDG725 is recruited to the promoters of key florigen genes, RICE FLOWERING LOCUS T1 (RFT1) and Heading date 3a (Hd3a), for H3K36 deposition to promote gene activation and rice plant flowering. OsSUF4 target genes include a number of genes involved in many biological processes. Flowering plant Arabidopsis SUF4 binds to a 15bp DNA element (5'-CCAAATTTTAAGTTT-3') within the promoter of the floral repressor gene FLOWERING LOCUS C (FLC) and recruits the FRI-C transcription activator complex to the FLC promoter. Although the DNA-binding element and target genes of AtSUF4 are different from those of OsSUF4, AtSUF4 is known to interact with the Arabidopsis H3K36 methyltransferase SDG8 (also known as ASHH2/EFS/SET8), and the methylation deposition mechanism mediated by the SUF4 transcription factor and H3K36 methyltransferase may be conserved in Arabidopsis and rice. Proteins in this family have two conserved C2H2-type zinc finger motifs at the N-terminus (included in this model), and a large proline-rich domain at the C-terminus; for OsSUF4, it has been shown that the N-terminal zinc-finger domain is responsible for DNA binding, and that the C-terminal domain interacts with SDG725.


Pssm-ID: 411020 [Multi-domain]  Cd Length: 82  Bit Score: 35.22  E-value: 5.88e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2287779844  76 KPYkCQECNKSFTVKSTLTKHQRIHTgkkpYKCNICDKSFTQCSSLKTH-QRLH 128
Cdd:cd20908     1 KPW-CYYCDREFDDEKILIQHQKAKH----FKCHICHKKLYTAGGLAVHcLQVH 49
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 74-124 7.52e-03

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 38.16  E-value: 7.52e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2287779844  74 GEKPYKCQ--ECNKSFTVKSTLT-------------------KHQRIHTGKKPYKCNICDKSFTQCSSLKTH 124
Cdd:COG5189   346 DGKPYKCPveGCNKKYKNQNGLKyhmlhghqnqklhenpspeKMNIFSAKDKPYRCEVCDKRYKNLNGLKYH 417
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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