NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2462582333|ref|XP_054180363|]
View 

GDP-fucose protein O-fucosyltransferase 2 isoform X1 [Homo sapiens]

Protein Classification

GDP-fucose protein O-fucosyltransferase 2( domain architecture ID 10181941)

GDP-fucose protein O-fucosyltransferase 2 (POFUT2) catalyzes the reaction that attaches fucose through an O-glycosidic linkage to a conserved serine or threonine residue in the consensus sequence C1-X-X-S/T-C2 of thrombospondin type I repeats (TSRs) where C1 and C2 are the first and second cysteines of the repeat, respectively

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
O-FucT-2 cd11298
GDP-fucose protein O-fucosyltransferase 2; O-FucT-2 adds O-fucose to thrombospondin type 1 ...
45-485 0e+00

GDP-fucose protein O-fucosyltransferase 2; O-FucT-2 adds O-fucose to thrombospondin type 1 repeats (TSRs), and appears conserved in bilateria. The O-fucosylation of TSRs appears to play a role in regulating secretion of metalloproteases of the ADAMTS superfamily. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes.


:

Pssm-ID: 211384  Cd Length: 374  Bit Score: 596.17  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333  45 YLLYDVNPPEGFNLRRDVYIRIASLLKTLLK---TEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVIE 121
Cdd:cd11298     1 YLLYDVNPGEGFNLRRDVYIRVANLVKSLNKrgkEQDWVLVLPPWGRLYHWKSRDIKQSRLPWSLFFDLESLNRYIPVIE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333 122 YEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRCllrllplpqavplcaeaWRMGRDE 201
Cdd:cd11298    81 YEEFLKETGPVSIDILYYLQHYAEGWEKGKWEDKLEERSCIIEPVYSKDCDGKYRG-----------------WFWGYCE 143
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333 202 HLAETpclfpcvFSCiwmlpqgwrscqsqvsiaikgsdttrppvekLSVnslhvssaraagskawQGSASIVAPLLLRNT 281
Cdd:cd11298   144 VTARK-------FSC-------------------------------LSF----------------QGSASYLAPSLLENK 169
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333 282 SARSVMLDRAENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRSRHLNSTDDADRIPFQEDWmKMKVKLGSALGGPYLG 361
Cdd:cd11298   170 FLRSIMIDRAEVLLHDHYGILDYWNARRSMRFAKHLRDIANEFRKEYLNSTDESDKTVRPEWW-RMKKKKGSALGGPYLA 248
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333 362 VHLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLL--PEMVRFEPTWEELELYKDGGVA 439
Cdd:cd11298   249 VHLRRGDFVYGRKKDVPSLKGAAKQILNLMKKLKLKKVFIATDAKKEELEELKKLLkkLKVVRYEPTLEELEKLKDGGVA 328
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*.
gi 2462582333 440 IIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTTYNRFCGD 485
Cdd:cd11298   329 IIDQWICAHARYFIGTKESTFSFRIQEEREILGFPPDTTFNRLCGD 374
 
Name Accession Description Interval E-value
O-FucT-2 cd11298
GDP-fucose protein O-fucosyltransferase 2; O-FucT-2 adds O-fucose to thrombospondin type 1 ...
45-485 0e+00

GDP-fucose protein O-fucosyltransferase 2; O-FucT-2 adds O-fucose to thrombospondin type 1 repeats (TSRs), and appears conserved in bilateria. The O-fucosylation of TSRs appears to play a role in regulating secretion of metalloproteases of the ADAMTS superfamily. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes.


Pssm-ID: 211384  Cd Length: 374  Bit Score: 596.17  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333  45 YLLYDVNPPEGFNLRRDVYIRIASLLKTLLK---TEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVIE 121
Cdd:cd11298     1 YLLYDVNPGEGFNLRRDVYIRVANLVKSLNKrgkEQDWVLVLPPWGRLYHWKSRDIKQSRLPWSLFFDLESLNRYIPVIE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333 122 YEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRCllrllplpqavplcaeaWRMGRDE 201
Cdd:cd11298    81 YEEFLKETGPVSIDILYYLQHYAEGWEKGKWEDKLEERSCIIEPVYSKDCDGKYRG-----------------WFWGYCE 143
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333 202 HLAETpclfpcvFSCiwmlpqgwrscqsqvsiaikgsdttrppvekLSVnslhvssaraagskawQGSASIVAPLLLRNT 281
Cdd:cd11298   144 VTARK-------FSC-------------------------------LSF----------------QGSASYLAPSLLENK 169
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333 282 SARSVMLDRAENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRSRHLNSTDDADRIPFQEDWmKMKVKLGSALGGPYLG 361
Cdd:cd11298   170 FLRSIMIDRAEVLLHDHYGILDYWNARRSMRFAKHLRDIANEFRKEYLNSTDESDKTVRPEWW-RMKKKKGSALGGPYLA 248
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333 362 VHLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLL--PEMVRFEPTWEELELYKDGGVA 439
Cdd:cd11298   249 VHLRRGDFVYGRKKDVPSLKGAAKQILNLMKKLKLKKVFIATDAKKEELEELKKLLkkLKVVRYEPTLEELEKLKDGGVA 328
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*.
gi 2462582333 440 IIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTTYNRFCGD 485
Cdd:cd11298   329 IIDQWICAHARYFIGTKESTFSFRIQEEREILGFPPDTTFNRLCGD 374
O-FucT pfam10250
GDP-fucose protein O-fucosyltransferase; This is a family of conserved proteins representing ...
45-471 9.29e-37

GDP-fucose protein O-fucosyltransferase; This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present in O-FucT-1 as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and C. elegans. Both features are characteriztic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese.


Pssm-ID: 463023 [Multi-domain]  Cd Length: 247  Bit Score: 135.89  E-value: 9.29e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333  45 YLLYDvnPPEG-FNLRRDVYIRIASLLKTLLKTeewvLVLPPWGRLYHWQSPDIhqVRIPWSEFFDLpslnknipvieye 123
Cdd:pfam10250   1 YLLYC--PCNGgFNQQRDHICDAVAFARLLNAT----LVLPPWDQLYHWRDPST--DQIPFSDIFDE------------- 59
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333 124 qfiaesggpFIDqvyvlqsyaegwkegtweekvderpcidqllysqdkheyyrcllrllplpqavPLCaeawrmgrdehl 203
Cdd:pfam10250  60 ---------FIE-----------------------------------------------------SLC------------ 65
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333 204 aetpclfpcvfsciwmlpqgwrscqsqvsiaikgsdttrppveklsvnslhvssaraagsKAWQGSASIvaplllrntsa 283
Cdd:pfam10250  66 ------------------------------------------------------------RSKQGNFGP----------- 74
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333 284 rsvmldraenllhdhyggkeYWDTRRSMVFARHLREVGDEFRSRHLNstddadripfqedwmkmkvklgsalgGPYLGVH 363
Cdd:pfam10250  75 --------------------FWVNFHALRFSPEIEELGDKLVDRLLK--------------------------GPYLALH 108
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333 364 LRR-KDFI--WGHRQD--------------------------VPSLEGAVRKIRSLMKTHRldKVFVATDAVRKEYE--E 412
Cdd:pfam10250 109 LRReKDMLaaSGCAEGggdeeaeedpeerrrnglcpltpeecLPSLVGILLQALGFVKKLT--RIYVATDEIYGGEElaP 186
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462582333 413 LKKLLPEMVRFE--PTWEELELYKDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREIL 471
Cdd:pfam10250 187 LKSMFPNLVTKEslASVEELEPFKDGSSAALDYIICLHSDVFIGTCVSNFSAFVKGERRYL 247
 
Name Accession Description Interval E-value
O-FucT-2 cd11298
GDP-fucose protein O-fucosyltransferase 2; O-FucT-2 adds O-fucose to thrombospondin type 1 ...
45-485 0e+00

GDP-fucose protein O-fucosyltransferase 2; O-FucT-2 adds O-fucose to thrombospondin type 1 repeats (TSRs), and appears conserved in bilateria. The O-fucosylation of TSRs appears to play a role in regulating secretion of metalloproteases of the ADAMTS superfamily. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes.


Pssm-ID: 211384  Cd Length: 374  Bit Score: 596.17  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333  45 YLLYDVNPPEGFNLRRDVYIRIASLLKTLLK---TEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVIE 121
Cdd:cd11298     1 YLLYDVNPGEGFNLRRDVYIRVANLVKSLNKrgkEQDWVLVLPPWGRLYHWKSRDIKQSRLPWSLFFDLESLNRYIPVIE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333 122 YEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRCllrllplpqavplcaeaWRMGRDE 201
Cdd:cd11298    81 YEEFLKETGPVSIDILYYLQHYAEGWEKGKWEDKLEERSCIIEPVYSKDCDGKYRG-----------------WFWGYCE 143
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333 202 HLAETpclfpcvFSCiwmlpqgwrscqsqvsiaikgsdttrppvekLSVnslhvssaraagskawQGSASIVAPLLLRNT 281
Cdd:cd11298   144 VTARK-------FSC-------------------------------LSF----------------QGSASYLAPSLLENK 169
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333 282 SARSVMLDRAENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRSRHLNSTDDADRIPFQEDWmKMKVKLGSALGGPYLG 361
Cdd:cd11298   170 FLRSIMIDRAEVLLHDHYGILDYWNARRSMRFAKHLRDIANEFRKEYLNSTDESDKTVRPEWW-RMKKKKGSALGGPYLA 248
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333 362 VHLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLL--PEMVRFEPTWEELELYKDGGVA 439
Cdd:cd11298   249 VHLRRGDFVYGRKKDVPSLKGAAKQILNLMKKLKLKKVFIATDAKKEELEELKKLLkkLKVVRYEPTLEELEKLKDGGVA 328
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*.
gi 2462582333 440 IIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTTYNRFCGD 485
Cdd:cd11298   329 IIDQWICAHARYFIGTKESTFSFRIQEEREILGFPPDTTFNRLCGD 374
O-FucT pfam10250
GDP-fucose protein O-fucosyltransferase; This is a family of conserved proteins representing ...
45-471 9.29e-37

GDP-fucose protein O-fucosyltransferase; This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present in O-FucT-1 as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and C. elegans. Both features are characteriztic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese.


Pssm-ID: 463023 [Multi-domain]  Cd Length: 247  Bit Score: 135.89  E-value: 9.29e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333  45 YLLYDvnPPEG-FNLRRDVYIRIASLLKTLLKTeewvLVLPPWGRLYHWQSPDIhqVRIPWSEFFDLpslnknipvieye 123
Cdd:pfam10250   1 YLLYC--PCNGgFNQQRDHICDAVAFARLLNAT----LVLPPWDQLYHWRDPST--DQIPFSDIFDE------------- 59
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333 124 qfiaesggpFIDqvyvlqsyaegwkegtweekvderpcidqllysqdkheyyrcllrllplpqavPLCaeawrmgrdehl 203
Cdd:pfam10250  60 ---------FIE-----------------------------------------------------SLC------------ 65
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333 204 aetpclfpcvfsciwmlpqgwrscqsqvsiaikgsdttrppveklsvnslhvssaraagsKAWQGSASIvaplllrntsa 283
Cdd:pfam10250  66 ------------------------------------------------------------RSKQGNFGP----------- 74
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333 284 rsvmldraenllhdhyggkeYWDTRRSMVFARHLREVGDEFRSRHLNstddadripfqedwmkmkvklgsalgGPYLGVH 363
Cdd:pfam10250  75 --------------------FWVNFHALRFSPEIEELGDKLVDRLLK--------------------------GPYLALH 108
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333 364 LRR-KDFI--WGHRQD--------------------------VPSLEGAVRKIRSLMKTHRldKVFVATDAVRKEYE--E 412
Cdd:pfam10250 109 LRReKDMLaaSGCAEGggdeeaeedpeerrrnglcpltpeecLPSLVGILLQALGFVKKLT--RIYVATDEIYGGEElaP 186
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462582333 413 LKKLLPEMVRFE--PTWEELELYKDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREIL 471
Cdd:pfam10250 187 LKSMFPNLVTKEslASVEELEPFKDGSSAALDYIICLHSDVFIGTCVSNFSAFVKGERRYL 247
O-FucT_like cd11296
GDP-fucose protein O-fucosyltransferase and related proteins; O-fucosyltransferase-like ...
304-473 2.44e-27

GDP-fucose protein O-fucosyltransferase and related proteins; O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes.


Pssm-ID: 211383  Cd Length: 206  Bit Score: 109.04  E-value: 2.44e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333 304 YWDTRRSMVFARHLREVGDEFRSrhlnstddadripfqedwmkmkvKLGSALGGPYLGVHLRRKDFIWGHRQ-------- 375
Cdd:cd11296    42 IRLVGKHLRFSPEIRKLADRFVR-----------------------KLLGLPGGPYLAVHLRRGDFEVECCHlakwmgey 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333 376 ---DVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEY--EELKKLLPEMVRFEPTWEELELYKD-----GGVAIIDQWI 445
Cdd:cd11296    99 leeCLLSAEEIAEKIKELMAERKLKVVYVATDEADREElrEELRKAGIRVVTKDDLLEDAELLELekldnYLLSLVDQEI 178
                         170       180
                  ....*....|....*....|....*...
gi 2462582333 446 CAHARFFIGTSVSTFSFRIHEEREILGL 473
Cdd:cd11296   179 CSRADVFIGTGFSTFSSNVALLRRWRGK 206
O-FucT-1 cd11302
GDP-fucose protein O-fucosyltransferase 1; The protein O-fucosyltransferase 1 (Ofut1 or ...
355-473 6.94e-06

GDP-fucose protein O-fucosyltransferase 1; The protein O-fucosyltransferase 1 (Ofut1 or O-FucT-1) adds O-fucose to EGF (epidermal growth factor-like) repeats. The O-fucsosylation of the Notch receptor signaling protein is dependent on this enzyme, which requires GDP-fucose as a substrate. O-fucose residues added to the target of O-FucT-1 may be further elongated by other glycosyltransferases. On top of O-fucosylation, O-FucT-1 may have other functions such as the regulation of the Notch receptor exit from the ER. Six highly conserved cysteines are present in O-FucT-1, which is a soluble ER protein, as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and C. elegans. Both features are characteristic of several glycosyltransferase families. The membrane-bound pre-protein is released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese. O-FucT-1 is similar to family 1 glycosyltransferases (GT1).


Pssm-ID: 211388  Cd Length: 347  Bit Score: 48.00  E-value: 6.94e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333 355 LGGPYLGVHLRR-----------KDFIW------------GHRQDV------PSLEGAVRKIRSLMKTHRLDKVFVATDA 405
Cdd:cd11302   200 LPRPFVGIHLRNgidwknacehvKGTSRnlmaspqclgygNERGTLtkemclPSKEEILKQVKRAVKKIKAKSVFIATDN 279
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462582333 406 VRKEyEELKKLLPemvrfeptWEELELYK-DGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGL 473
Cdd:cd11302   280 DHMI-EELKKALK--------SLKVKVVHlDPDEPQIDLAILGKADHFIGNCVSSFSAFVKRERDVAGL 339
NodZ_like cd11548
Alpha 1,6-fucosyltransferase similar to Bradyrhizobium NodZ; Bradyrhizobium NodZ is an alpha 1, ...
356-461 1.52e-05

Alpha 1,6-fucosyltransferase similar to Bradyrhizobium NodZ; Bradyrhizobium NodZ is an alpha 1,6-fucosyltransferase involved in the biosynthesis of the nodulation factor, a lipo-chitooligosaccharide formed by three-to-six beta-1,4-linked N-acetyl-d-glucosamine (GlcNAc) residues and a fatty acid acyl group attached to the nitrogen atom at the non-reducing end. NodZ transfers L-fucose from the GDP-beta-L-fucose donor to the reducing residue of the chitin oligosaccharide backbone, before the attachment of a fatty acid group. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes.


Pssm-ID: 211389 [Multi-domain]  Cd Length: 287  Bit Score: 46.59  E-value: 1.52e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462582333 356 GGPYLGVHLRRKDfiwGHRQDVPSLEGAVRKIRSLMKTHRLDK---VFVATDAVRKEyEELKKLLPEMV----RFEPTWE 428
Cdd:cd11548   164 GRPTIGVHIRTTD---HKDSLFIKLSPLHRVVDALRKKVALHKdatIFLATDSAEVK-DELKRLFPDVVvtpkEFPPHGE 239
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2462582333 429 ELEL-YKDGGV-AIIDQWICAHARFFIGTSVSTFS 461
Cdd:cd11548   240 RSASdGLEGAEdALIDMYLLARCDHLIGSRFSTFS 274
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH