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Conserved domains on  [gi|2462591113|ref|XP_054203129|]
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histone-lysine N-methyltransferase SETD5 isoform X29 [Homo sapiens]

Protein Classification

SETD5 family SET domain-containing protein( domain architecture ID 14442870)

SETD5 family SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain-containing protein similar to SET domain region of Homo sapiens SET domain-containing protein 5, a chromatin regulator required for brain development

CATH:  2.170.270.10
EC:  2.1.1.-
Gene Ontology:  GO:0005515|GO:1904047|GO:0016279
PubMed:  12372294|17013555
SCOP:  3000162

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SET_SETD5 cd19181
SET domain (including post-SET domain) found in SET domain-containing protein 5 (SETD5) and ...
 305-454 1.49e-114

SET domain (including post-SET domain) found in SET domain-containing protein 5 (SETD5) and similar proteins; SETD5 is a probable transcriptional regulator that acts via the formation of large multiprotein complexes that modify and/or remodel the chromatin. SETD5 loss-of-function mutations are a likely cause of a familial syndromic intellectual disability with variable phenotypic expression.


:

Pssm-ID: 380958  Cd Length: 150  Bit Score: 345.84  E-value: 1.49e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 305 GSQMQLQLGRVTRVQKHRKILRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFKKPYPFVLFYSKFNGVEMCVDARTFGN 384
Cdd:cd19181     1 GSQMQLQLGRVTRVQKHRKILRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFKRPYPFVLFYSKFNGVEMCVDARTFGN 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 385 DARFIRRSCTPNAEVRHMIADGMIHLCIYAVSAITKDAEVTIAFDYEYSNCNYKVDCACHKGNRNCPIQK 454
Cdd:cd19181    81 DARFIRRSCTPNAEVRHMIADGMIHLCIYAVAAIAKDAEVTIAFDYEYSNCNYKVDCACHKGNRNCPVQK 150
COG5644 super family cl35035
U3 small nucleolar RNA-associated protein 14 [Function unknown];
473-693 2.28e-03

U3 small nucleolar RNA-associated protein 14 [Function unknown];


The actual alignment was detected with superfamily member COG5644:

Pssm-ID: 227931 [Multi-domain]  Cd Length: 869  Bit Score: 41.61  E-value: 2.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 473 TIGAETRR------RKARRKELEMEQQNEASEENNDQQS-QEVPEKVTVSSDHEEVDNPEEKPEEEKEEVIDDQENlahs 545
Cdd:COG5644   457 SHGEGTREavneqiRKGDELMQRIHGKEIMDGEDVSEFSdSDYDTNEQVSTAFEKIRNEEELKGVLGMKFMRDASN---- 532

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 546 RRTREDRKVEAIMHAFENLEKRKKRRDQPLEQSNsdVEITTTTSE-TPVGEETKTEAPESEVSNSVSnvtiPSTPQSVGV 624
Cdd:COG5644   533 RQMAASKISVADLVKVENGDDIDVGELDEVGGDA--IYANAGRREvFPVVEQRRKLAPRKRKEDFVT----PSTSLEKSM 606

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 625 NTRRSSQAGDIAAEKLVPKPPPA----KPSRPRPKSRISRYRTSSAQRLKRQKQA--------NAQQAELSQAALEEGGS 692
Cdd:COG5644   607 DRILHGQKKRAEGAVVFEKPLEAtenfNPWLDRKMRRIKRIKKKAYRRIRRDKRLkkkmpeeeNTQENHLGSEKKRHGGV 686


                  .
gi 2462591113 693 N 693
Cdd:COG5644   687 P 687
 
Name Accession Description Interval E-value
SET_SETD5 cd19181
SET domain (including post-SET domain) found in SET domain-containing protein 5 (SETD5) and ...
 305-454 1.49e-114

SET domain (including post-SET domain) found in SET domain-containing protein 5 (SETD5) and similar proteins; SETD5 is a probable transcriptional regulator that acts via the formation of large multiprotein complexes that modify and/or remodel the chromatin. SETD5 loss-of-function mutations are a likely cause of a familial syndromic intellectual disability with variable phenotypic expression.


Pssm-ID: 380958  Cd Length: 150  Bit Score: 345.84  E-value: 1.49e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 305 GSQMQLQLGRVTRVQKHRKILRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFKKPYPFVLFYSKFNGVEMCVDARTFGN 384
Cdd:cd19181     1 GSQMQLQLGRVTRVQKHRKILRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFKRPYPFVLFYSKFNGVEMCVDARTFGN 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 385 DARFIRRSCTPNAEVRHMIADGMIHLCIYAVSAITKDAEVTIAFDYEYSNCNYKVDCACHKGNRNCPIQK 454
Cdd:cd19181    81 DARFIRRSCTPNAEVRHMIADGMIHLCIYAVAAIAKDAEVTIAFDYEYSNCNYKVDCACHKGNRNCPVQK 150
SET smart00317
SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain; Putative methyl transferase, based on ...
 325-434 2.18e-25

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain; Putative methyl transferase, based on outlier plant homologues


Pssm-ID: 214614 [Multi-domain]  Cd Length: 124  Bit Score: 102.03  E-value: 2.18e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113  325 LRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFK--KPYPFVLFYSKfngVEMCVDARTFGNDARFIRRSCTPNAEVRHM 402
Cdd:smart00317  15 VRATEDIPKGEFIGEYVGEIITSEEAEERPKAYDtdGAKAFYLFDID---SDLCIDARRKGNLARFINHSCEPNCELLFV 91

                           90       100       110
                   ....*....|....*....|....*....|..
gi 2462591113  403 IADGMIHLCIYAVSAITKDAEVTIAFDYEYSN 434
Cdd:smart00317  92 EVNGDDRIVIFALRDIKPGEELTIDYGSDYAN 123
SET pfam00856
SET domain; SET domains are protein lysine methyltransferase enzymes. SET domains appear to be ...
 325-430 6.40e-14

SET domain; SET domains are protein lysine methyltransferase enzymes. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains have been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as SET-N and SET-C. SET-C forms an unusual and conserved knot-like structure of probably functional importance. Additionally to SET-N and SET-C, an insert region (SET-I) and flanking regions of high structural variability form part of the overall structure.


Pssm-ID: 459965 [Multi-domain]  Cd Length: 115  Bit Score: 68.70  E-value: 6.40e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 325 LRAARDLALDTLIIEYRGKVML-------RQQFEVNGHFFKKPYPFVLFYSKFngVEMCVDARTF--GNDARFIRRSCTP 395
Cdd:pfam00856   4 LFATEDIPKGEFIGEYVEVLLItkeeadkRELLYYDKLELRLWGPYLFTLDED--SEYCIDARALyyGNWARFINHSCDP 81

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2462591113 396 NAEVRHMIADGMIHLCIYAVSAITKDAEVTIafDY 430
Cdd:pfam00856  82 NCEVRVVYVNGGPRIVIFALRDIKPGEELTI--DY 114
SET COG2940
SET domain-containing protein (function unknown) [General function prediction only];
327-450 5.85e-12

SET domain-containing protein (function unknown) [General function prediction only];


Pssm-ID: 442183 [Multi-domain]  Cd Length: 134  Bit Score: 63.83  E-value: 5.85e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 327 AARDLALDTLIIEYRGKVMLRQQFEVNGHFFKKPYPFVLFYSKfNGVemcVDARTFGNDARFIRRSCTPNAEVRhmIADG 406
Cdd:COG2940    22 ATRDIPKGTLIGEYPGEVITWAEAERREPHKEPLHTYLFELDD-DGV---IDGALGGNPARFINHSCDPNCEAD--EEDG 95

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 2462591113 407 miHLCIYAVSAITKDAEVTIafDYEYSNCNYKVDCAChkgnRNC 450
Cdd:COG2940    96 --RIFIVALRDIAAGEELTY--DYGLDYDEEEYPCRC----PNC 131
COG5644 COG5644
U3 small nucleolar RNA-associated protein 14 [Function unknown];
473-693 2.28e-03

U3 small nucleolar RNA-associated protein 14 [Function unknown];


Pssm-ID: 227931 [Multi-domain]  Cd Length: 869  Bit Score: 41.61  E-value: 2.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 473 TIGAETRR------RKARRKELEMEQQNEASEENNDQQS-QEVPEKVTVSSDHEEVDNPEEKPEEEKEEVIDDQENlahs 545
Cdd:COG5644   457 SHGEGTREavneqiRKGDELMQRIHGKEIMDGEDVSEFSdSDYDTNEQVSTAFEKIRNEEELKGVLGMKFMRDASN---- 532

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 546 RRTREDRKVEAIMHAFENLEKRKKRRDQPLEQSNsdVEITTTTSE-TPVGEETKTEAPESEVSNSVSnvtiPSTPQSVGV 624
Cdd:COG5644   533 RQMAASKISVADLVKVENGDDIDVGELDEVGGDA--IYANAGRREvFPVVEQRRKLAPRKRKEDFVT----PSTSLEKSM 606

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 625 NTRRSSQAGDIAAEKLVPKPPPA----KPSRPRPKSRISRYRTSSAQRLKRQKQA--------NAQQAELSQAALEEGGS 692
Cdd:COG5644   607 DRILHGQKKRAEGAVVFEKPLEAtenfNPWLDRKMRRIKRIKKKAYRRIRRDKRLkkkmpeeeNTQENHLGSEKKRHGGV 686


                  .
gi 2462591113 693 N 693
Cdd:COG5644   687 P 687
 
Name Accession Description Interval E-value
SET_SETD5 cd19181
SET domain (including post-SET domain) found in SET domain-containing protein 5 (SETD5) and ...
 305-454 1.49e-114

SET domain (including post-SET domain) found in SET domain-containing protein 5 (SETD5) and similar proteins; SETD5 is a probable transcriptional regulator that acts via the formation of large multiprotein complexes that modify and/or remodel the chromatin. SETD5 loss-of-function mutations are a likely cause of a familial syndromic intellectual disability with variable phenotypic expression.


Pssm-ID: 380958  Cd Length: 150  Bit Score: 345.84  E-value: 1.49e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 305 GSQMQLQLGRVTRVQKHRKILRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFKKPYPFVLFYSKFNGVEMCVDARTFGN 384
Cdd:cd19181     1 GSQMQLQLGRVTRVQKHRKILRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFKRPYPFVLFYSKFNGVEMCVDARTFGN 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 385 DARFIRRSCTPNAEVRHMIADGMIHLCIYAVSAITKDAEVTIAFDYEYSNCNYKVDCACHKGNRNCPIQK 454
Cdd:cd19181    81 DARFIRRSCTPNAEVRHMIADGMIHLCIYAVAAIAKDAEVTIAFDYEYSNCNYKVDCACHKGNRNCPVQK 150
SET_KMT2E cd19182
SET domain found in inactive histone-lysine N-methyltransferase 2E (KMT2E) and similar ...
 316-432 8.83e-67

SET domain found in inactive histone-lysine N-methyltransferase 2E (KMT2E) and similar proteins; KMT2E (also termed inactive lysine N-methyltransferase 2E, myeloid/lymphoid or mixed-lineage leukemia protein 5 (MLL5)) plays a key role in hematopoiesis, spermatogenesis and cell cycle progression. It associates with chromatin regions downstream of transcriptional start sites of active genes and thus regulates gene transcription. Lack of key residues in the SET domain as well as the presence of an unusually large loop in the SET-I subdomain preclude the interaction of MLL5 SET with its cofactor and substrate thus making MLL5 devoid of any in vitro methyltransferase activity on full-length histones and histone H3 peptide.


Pssm-ID: 380959  Cd Length: 129  Bit Score: 218.61  E-value: 8.83e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 316 TRVQKHRKILRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFKKPYPFVLFYSKFNGVEMCVDARTFGNDARFIRRSCTP 395
Cdd:cd19182    12 SHVQKNKKILKAAKDLPPDTLIIEYRGKFMLREQFEANGYFFKRPYPFVLFYSKFHGLEMCVDARTFGNEARFIRRSCTP 91

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2462591113 396 NAEVRHMIADGMIHLCIYAVSAITKDAEVTIAFDYEY 432
Cdd:cd19182    92 NAEVRHVIEDGTIHLYIYSIRSIPKGTEITIAFDFDY 128
SET_SETD5-like cd10529
SET domain found in SET domain-containing protein 5 (SETD5), inactive histone-lysine ...
 318-432 8.25e-51

SET domain found in SET domain-containing protein 5 (SETD5), inactive histone-lysine N-methyltransferase 2E (KMT2E) and similar proteins; SETD5 is a probable transcriptional regulator that acts via the formation of large multiprotein complexes that modify and/or remodel the chromatin. KMT2E (also termed inactive lysine N-methyltransferase 2E or myeloid/lymphoid or mixed-lineage leukemia protein 5 (MLL5)) associates with chromatin regions downstream of transcriptional start sites of active genes and thus regulates gene transcription. The family also includes Saccharomyces cerevisiae SET domain-containing proteins, SET3 and SET4, and Schizosaccharomyces pombe SET3. Most of these family members contain a post-SET domain which harbors a zinc-binding site.


Pssm-ID: 380927  Cd Length: 127  Bit Score: 174.39  E-value: 8.25e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 318 VQKHRKILRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFKKPYPFVLFYSKFNGVEMCVDARTFGNDARFIRRSCTPNA 397
Cdd:cd10529    12 VGKNRKGLVATEDISPGEPILEYKGEVSLRSEFKEDNGFFKRPSPFVFFYDGFEGLPLCVDARKYGNEARFIRRSCRPNA 91

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2462591113 398 EVRHMIA-DGMIHLCIYAVSAITKDAEVTIAFDYEY 432
Cdd:cd10529    92 ELRHVVVsNGELRLFIFALKDIRKGTEITIPFDYDY 127
SET smart00317
SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain; Putative methyl transferase, based on ...
 325-434 2.18e-25

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain; Putative methyl transferase, based on outlier plant homologues


Pssm-ID: 214614 [Multi-domain]  Cd Length: 124  Bit Score: 102.03  E-value: 2.18e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113  325 LRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFK--KPYPFVLFYSKfngVEMCVDARTFGNDARFIRRSCTPNAEVRHM 402
Cdd:smart00317  15 VRATEDIPKGEFIGEYVGEIITSEEAEERPKAYDtdGAKAFYLFDID---SDLCIDARRKGNLARFINHSCEPNCELLFV 91

                           90       100       110
                   ....*....|....*....|....*....|..
gi 2462591113  403 IADGMIHLCIYAVSAITKDAEVTIAFDYEYSN 434
Cdd:smart00317  92 EVNGDDRIVIFALRDIKPGEELTIDYGSDYAN 123
SET_SpSET3-like cd19183
SET domain (including post-SET domain) found in Schizosaccharomyces pombe SET ...
 322-452 7.41e-17

SET domain (including post-SET domain) found in Schizosaccharomyces pombe SET domain-containing protein 3 (SETD3) and similar proteins; Schizosaccharomyces pombe SETD3 functions as a transcriptional regulator that acts via the formation of large multiprotein complexes that modify and/or remodel the chromatin. It is required for both, gene activation and repression.


Pssm-ID: 380960  Cd Length: 173  Bit Score: 78.98  E-value: 7.41e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 322 RKILRAARDLALDTLIIEYRGKVMLRQQFEVNG----HFFKKPYPFVLFYSKFngvEMCVDARTFGNDARFIRRSCTPNA 397
Cdd:cd19183    13 RFGLFADRPIPAGDPIQELLGEIGLQSEYIADPenqyQILGAPKPHVFFHPQS---PLYIDTRRSGSVARFIRRSCRPNA 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 398 EVRHMIAD--GMIHLCIYAVSAITKDAEVTIAFDYEYSNCNYKV----------------------------DCACHKGn 447
Cdd:cd19183    90 ELVTVASDsgSVLKFVLYASRDISPGEEITIGWDWDNPHPFRRFalgelvpsnldleqhllsfllqtilsngECACGDG- 168


                  ....*
gi 2462591113 448 RNCPI 452
Cdd:cd19183   169 KNCLF 173
SET_ASHR3-like cd19175
SET domain (including post-SET domain) found in Arabidopsis thaliana ASH1-related protein 3 ...
 325-450 5.03e-16

SET domain (including post-SET domain) found in Arabidopsis thaliana ASH1-related protein 3 (ASHR3) and similar proteins; This family includes Arabidopsis thaliana ASH1-related protein 3 (ASHR3, also termed protein SET DOMAIN GROUP 4 or protein stamen loss), ASH1 homolog 3 (ASHH3, also termed protein SET DOMAIN GROUP 7) and homolog 4 (ASHH4, also termed protein SET DOMAIN GROUP 24). They all function as histone-lysine N-methyltransferases (EC 2.1.1.43).


Pssm-ID: 380952 [Multi-domain]  Cd Length: 139  Bit Score: 75.53  E-value: 5.03e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 325 LRAARDLALDTLIIEYRGKV-----------MLRQQFEVNghffkkpypfvlFYSKFNGVEMCVDARTFGNDARFIRRSC 393
Cdd:cd19175    14 LVADEDINAGEFIIEYVGEViddktceerlwDMKHKGEKN------------FYMCEIDKDMVIDATFKGNLSRFINHSC 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2462591113 394 TPNAEVRHMIADGMIHLCIYAVSAITKDAEVTiaFDYEYSNCNYKVDCAChkGNRNC 450
Cdd:cd19175    82 DPNCELQKWQVDGETRIGVFAIRDIKKGEELT--YDYQFVQFGADQDCHC--GSKNC 134
SET_SETD2-like cd10531
SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2), ...
 325-450 1.69e-15

SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2), nuclear SETD2 (NSD2), ASH1-like protein (ASH1L) and similar proteins; This family includes SET domain-containing protein 2 (SETD2), nuclear SETD2 (NSD2) and ASH1-like protein (ASH1L), which function as histone-lysine N-methyltransferases. SETD2 specifically trimethylates 'Lys-36' of histone H3 (H3K36me3) using demethylated 'Lys-36' (H3K36me2) as substrate. NSD2 shows histone H3 'Lys-27' (H3K27me) methyltransferase activity. ASH1L specifically methylates 'Lys-36' of histone H3 (H3K36me). The family also includes Arabidopsis thaliana ASH1-related protein 3 (ASHR3) and similar proteins.


Pssm-ID: 380929  Cd Length: 136  Bit Score: 73.83  E-value: 1.69e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 325 LRAARDLALDTLIIEYRGKV--------MLRQQFEVNghffkKPYPFVLFYSKfngvEMCVDARTFGNDARFIRRSCTPN 396
Cdd:cd10531    14 VKAKEDIQKGEFIIEYVGEVidkkefkeRLDEYEELG-----KSNFYILSLSD----DVVIDATRKGNLSRFINHSCEPN 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2462591113 397 AEVRHMIADGMIHLCIYAVSAITKDAEVTiaFDYEYSNCNYKvDCACHKGNRNC 450
Cdd:cd10531    85 CETQKWIVNGEYRIGIFALRDIPAGEELT--FDYNFVNYNEA-KQVCLCGAQNC 135
SET_LegAS4-like cd10522
SET domain found in Legionella pneumophila type IV secretion system effector LegAS4 and ...
 314-432 6.22e-14

SET domain found in Legionella pneumophila type IV secretion system effector LegAS4 and similar proteins; LegAS4 is a type IV secretion system effector of Legionella pneumophila. It contains a SET domain that is involved in the modification of Lys4 of histone H3 (H3K4) in the nucleolus of the host cell, thereby enhancing heterochromatic rDNA transcription. It also contains an ankyrin repeat domain of unknown function at its C-terminal region.


Pssm-ID: 380920 [Multi-domain]  Cd Length: 122  Bit Score: 68.91  E-value: 6.22e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 314 RVTRVQKHRKI---LRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFKKP-YPFvlfysKFNGVEMCVDARTFGNDARFI 389
Cdd:cd10522     3 DISMIPNLSHNglgLFAAETIAKGEFVGEYTGEVLDRWEEDRDSVYHYDPlYPF-----DLNGDILVIDAGKKGNLTRFI 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2462591113 390 RRSCTPNAEVRHMIADGMIHLCIYAVSAITKDAEVTIAFDYEY 432
Cdd:cd10522    78 NHSDQPNLELIVRTLKGEQHIGFVAIRDIKPGEELFISYGPKY 120
SET pfam00856
SET domain; SET domains are protein lysine methyltransferase enzymes. SET domains appear to be ...
 325-430 6.40e-14

SET domain; SET domains are protein lysine methyltransferase enzymes. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains have been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as SET-N and SET-C. SET-C forms an unusual and conserved knot-like structure of probably functional importance. Additionally to SET-N and SET-C, an insert region (SET-I) and flanking regions of high structural variability form part of the overall structure.


Pssm-ID: 459965 [Multi-domain]  Cd Length: 115  Bit Score: 68.70  E-value: 6.40e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 325 LRAARDLALDTLIIEYRGKVML-------RQQFEVNGHFFKKPYPFVLFYSKFngVEMCVDARTF--GNDARFIRRSCTP 395
Cdd:pfam00856   4 LFATEDIPKGEFIGEYVEVLLItkeeadkRELLYYDKLELRLWGPYLFTLDED--SEYCIDARALyyGNWARFINHSCDP 81

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2462591113 396 NAEVRHMIADGMIHLCIYAVSAITKDAEVTIafDY 430
Cdd:pfam00856  82 NCEVRVVYVNGGPRIVIFALRDIKPGEELTI--DY 114
SET COG2940
SET domain-containing protein (function unknown) [General function prediction only];
327-450 5.85e-12

SET domain-containing protein (function unknown) [General function prediction only];


Pssm-ID: 442183 [Multi-domain]  Cd Length: 134  Bit Score: 63.83  E-value: 5.85e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 327 AARDLALDTLIIEYRGKVMLRQQFEVNGHFFKKPYPFVLFYSKfNGVemcVDARTFGNDARFIRRSCTPNAEVRhmIADG 406
Cdd:COG2940    22 ATRDIPKGTLIGEYPGEVITWAEAERREPHKEPLHTYLFELDD-DGV---IDGALGGNPARFINHSCDPNCEAD--EEDG 95

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 2462591113 407 miHLCIYAVSAITKDAEVTIafDYEYSNCNYKVDCAChkgnRNC 450
Cdd:COG2940    96 --RIFIVALRDIAAGEELTY--DYGLDYDEEEYPCRC----PNC 131
SET_SETD2 cd19172
SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2) and ...
 325-432 7.05e-12

SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2) and similar proteins; SETD2 (also termed HIF-1, huntingtin yeast partner B, huntingtin-interacting protein 1 (HIP-1), huntingtin-interacting protein B, lysine N-methyltransferase 3A or protein-lysine N-methyltransferase SETD2) acts as histone-lysine N-methyltransferase that specifically trimethylates 'Lys-36' of histone H3 (H3K36me3) using demethylated 'Lys-36' (H3K36me2) as substrate. It has been shown that methylation is a posttranslational modification of dynamic microtubules and that SETD2 methylates alpha-tubulin at lysine 40, the same lysine that is marked by acetylation on microtubules. Methylation of microtubules occurs during mitosis and cytokinesis and can be ablated by SETD2 deletion, which causes mitotic spindle and cytokinesis defects, micronuclei, and polyploidy.


Pssm-ID: 380949 [Multi-domain]  Cd Length: 142  Bit Score: 63.75  E-value: 7.05e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 325 LRAARDLALDTLIIEYRGKVMLRQQFEVNGHFF----KKPYPFVLFYSkfngvEMCVDARTFGNDARFIRRSCTPNAEVR 400
Cdd:cd19172    16 LRAAEDLPKGTFVIEYVGEVLDEKEFKRRMKEYaregNRHYYFMALKS-----DEIIDATKKGNLSRFINHSCEPNCETQ 90

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2462591113 401 HMIADGMIHLCIYAVSAITKDAEVTiaFDYEY 432
Cdd:cd19172    91 KWTVNGELRVGFFAKRDIPAGEELT--FDYQF 120
SET_ASH1L cd19174
SET domain (including post-SET domain) found in ASH1-like protein (ASH1L) and similar proteins; ...
 325-450 1.41e-11

SET domain (including post-SET domain) found in ASH1-like protein (ASH1L) and similar proteins; ASH1L (EC 2.1.1.43; also termed absent small and homeotic disks protein 1 homolog, KMT2H, or lysine N-methyltransferase 2H) acts as histone-lysine N-methyltransferase that specifically methylates 'Lys-36' of histone H3 (H3K36me). It plays important roles in development; heterozygous mutation of ASH1L is associated with severe intellectual disability (ID) and multiple congenital anomaly (MCA).


Pssm-ID: 380951 [Multi-domain]  Cd Length: 141  Bit Score: 63.08  E-value: 1.41e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 325 LRAARDLALDTLIIEYRGKVMLRQQFE--VNGHFFKKPYPFVLfysKFNGvEMCVDARTFGNDARFIRRSCTPNAEVRHM 402
Cdd:cd19174    14 VRTKEPIKAGQFIIEYVGEVVSEQEFRrrMIEQYHNHSHHYCL---NLDS-GMVIDGYRMGNEARFVNHSCDPNCEMQKW 89

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 2462591113 403 IADGMIHLCIYAVSAITKDAEVTiaFDYEYSNCNYKVDCACHKGNRNC 450
Cdd:cd19174    90 SVNGVYRIGLFALKDIPAGEELT--YDYNFHSFNVEKQQPCKCGSPNC 135
SET_SETD1-like cd10518
SET domain (including post-SET domain) found in SET domain-containing proteins (SETD1A/SETD1B), ...
 327-450 8.75e-11

SET domain (including post-SET domain) found in SET domain-containing proteins (SETD1A/SETD1B), histone-lysine N-methyltransferases (KMT2A/KMT2B/KMT2C/KMT2D) and similar proteins; This family includes SET domain-containing protein 1A (SETD1A), 1B (SETD1B), as well as histone-lysine N-methyltransferase 2A (KMT2A), 2B (KMT2B), 2C (KMT2C), 2D (KMT2D). These proteins are histone-lysine N-methyltransferases (EC 2.1.1.43) that specifically methylate 'Lys-4' of histone H3 (H3K4me).


Pssm-ID: 380916  Cd Length: 150  Bit Score: 61.07  E-value: 8.75e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 327 AARDLALDTLIIEYRGKVM------LRQQF--EVNGhffKKPYPFvlfysKFNGvEMCVDARTFGNDARFIRRSCTPNAE 398
Cdd:cd10518    30 AKRPIAAGEMVIEYVGEVIrpivadKREKRydEEGG---GGTYMF-----RIDE-DLVIDATKKGNIARFINHSCDPNCY 100

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2462591113 399 VRHMIADGMIHLCIYAVSAITKDAEVTiaFDYEY-SNCNYKVDCAChkGNRNC 450
Cdd:cd10518   101 AKIITVDGEKHIVIFAKRDIAPGEELT--YDYKFpIEDEEKIPCLC--GAPNC 149
SET_KMT2A_2B cd19170
SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2A (KMT2A), ...
 315-450 2.47e-10

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2A (KMT2A), 2B (KMT2B) and similar proteins; This family includes KMT2A and KMT2B. Both KMT2A (also termed ALL-1 or CXXC7 or MLL or MLL1 or TRX1 or HRX) and KMT2B (also termed MLL4 or TRX2) act as histone methyltransferases that methylate 'Lys-4' of histone H3 (H3K4me).


Pssm-ID: 380947 [Multi-domain]  Cd Length: 152  Bit Score: 59.71  E-value: 2.47e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 315 VTRVQKHRKILRAARDLALDTLIIEYRGKVM---LRQQFEvnghffkKPYPfvlfySKFNGVEM-------CVDARTFGN 384
Cdd:cd19170    18 VYRSPIHGRGLFCKRNIDAGEMVIEYAGEVIrsvLTDKRE-------KYYE-----SKGIGCYMfridddeVVDATMHGN 85

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462591113 385 DARFIRRSCTPNAEVRHMIADGMIHLCIYAVSAITKDAEVTiaFDYEYSNCNYKVDCAChkGNRNC 450
Cdd:cd19170    86 AARFINHSCEPNCYSRVVNIDGKKHIVIFALRRILRGEELT--YDYKFPIEDVKIPCTC--GSKKC 147
SET_KMT2A cd19206
SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2A (KMT2A) ...
 315-450 1.01e-09

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2A (KMT2A) and similar proteins; KMT2A (EC2.1.1.43; also termed lysine N-methyltransferase 2A, ALL-1, CXXC-type zinc finger protein 7 (CXXC7), myeloid/lymphoid or mixed-lineage leukemia (MLL), myeloid/lymphoid or mixed-lineage leukemia protein 1 (MLL1), trithorax-like protein (TRX1), or zinc finger protein HRX) acts as a histone methyltransferase that plays an essential role in early development and hematopoiesis. It is a catalytic subunit of the MLL1/MLL complex, a multiprotein complex that mediates both methylation of 'Lys-4' of histone H3 (H3K4me) complex and acetylation of 'Lys-16' of histone H4 (H4K16ac).


Pssm-ID: 380983 [Multi-domain]  Cd Length: 154  Bit Score: 58.11  E-value: 1.01e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 315 VTRVQKHRKILRAARDLALDTLIIEYRGKVMLRQQFEVNGHFF-KKPYPFVLFysKFNGVEMcVDARTFGNDARFIRRSC 393
Cdd:cd19206    18 VYRSPIHGRGLFCKRNIDAGEMVIEYSGNVIRSILTDKREKYYdSKGIGCYMF--RIDDSEV-VDATMHGNAARFINHSC 94

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2462591113 394 TPNAEVRHMIADGMIHLCIYAVSAITKDAEVTIAFDYEYSNCNYKVDCAChkGNRNC 450
Cdd:cd19206    95 EPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDASNKLPCNC--GAKKC 149
SET_SETD1 cd19169
SET domain (including post-SET domain) found in SET domain-containing protein 1 (SETD1) and ...
 325-450 2.45e-09

SET domain (including post-SET domain) found in SET domain-containing protein 1 (SETD1) and similar proteins; This family includes SET domain-containing protein 1A (SETD1A) and SET domain-containing protein 1B (SETD1B). These proteins are histone-lysine N-methyltransferases that specifically methylate 'Lys-4' of histone H3 (H3K4me) when part of the SET1 histone methyltransferase (HMT) complex, but not if the neighboring 'Lys-9' residue is already methylated.


Pssm-ID: 380946  Cd Length: 148  Bit Score: 56.58  E-value: 2.45e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 325 LRAARDLALDTLIIEYRGKVmLRQ--------QFEVNGhfFKKPYPFVLfyskfnGVEMCVDARTFGNDARFIRRSCTPN 396
Cdd:cd19169    27 LFALEPIAADEMVIEYVGQV-IRQsvaderekRYEAIG--IGSSYLFRV------DDDTIIDATKCGNLARFINHSCNPN 97

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2462591113 397 AEVRHMIADGMIHLCIYAVSAITKDAEVTiaFDYEYSNCNYKVDCAChkGNRNC 450
Cdd:cd19169    98 CYAKIITVESQKKIVIYSKRPIAVNEEIT--YDYKFPIEDEKIPCLC--GAPQC 147
SET_SETMAR cd10544
SET domain (including pre-SET and post-SET domains) found in SET domain and mariner ...
 299-450 4.00e-09

SET domain (including pre-SET and post-SET domains) found in SET domain and mariner transposase fusion protein (SETMAR) and similar proteins; SETMAR (also termed metnase) is a DNA-binding protein that is indirectly recruited to sites of DNA damage through protein-protein interactions. It has a sequence-specific DNA-binding activity recognizing the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element and displays a DNA nicking and end joining activity. SETMAR also acts as a histone-lysine N-methyltransferase that methylates 'Lys-4' and 'Lys-36' of histone H3. It specifically mediates dimethylation of H3 'Lys-36' at sites of DNA double-strand break and may recruit proteins required for efficient DSB repair through non-homologous end-joining.


Pssm-ID: 380942 [Multi-domain]  Cd Length: 254  Bit Score: 58.46  E-value: 4.00e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 299 CNNTVI--GSQMQLQlgrVTRVQKHRKILRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFKKP---YPFVL--FYSKFN 371
Cdd:cd10544    79 CQNRVVqnGLQFKLQ---VFKTPKKGWGLRTLEFIPKGRFVCEYAGEVIGFEEARRRTKSQTKGdmnYIIVLreHLSSGK 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 372 GVEMCVDARTFGNDARFIRRSCTPNAevrHMIA---DGMI-HLCIYAVSAITKDAEVTiaFDYEYSNCNYKVDCA----- 442
Cdd:cd10544   156 VLETFVDPTYIGNIGRFLNHSCEPNL---FMVPvrvDSMVpKLALFAARDIVAGEELS--FDYSGEFSNSVESVTlarqd 230

                         170
                  ....*....|....*
gi 2462591113 443 -------CHKGNRNC 450
Cdd:cd10544   231 esksrkpCLCGAENC 245
SET_KMT2C_2D cd19171
SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2C (KMT2C), ...
 325-450 1.37e-08

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2C (KMT2C), 2D (KMT2D) and similar proteins; This family includes KMT2C and KMT2D. Both, KMT2C (also termed HALR or MLL3) and KMT2D (also termed ALR or MLL2), act as histone methyltransferases that methylate 'Lys-4' of histone H3 (H3K4me). They are subunits of MLL2/3 complex, a coactivator complex of nuclear receptors, involved in transcriptional coactivation.


Pssm-ID: 380948 [Multi-domain]  Cd Length: 153  Bit Score: 54.74  E-value: 1.37e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 325 LRAARDLALDTLIIEYRGKVMLRQQFEVNGHffkkpypfvLFYSKFNGVEM-------CVDARTFGNDARFIRRSCTPN- 396
Cdd:cd19171    28 LYAARDIEKHTMVIEYIGEIIRNEVANRREK---------IYESQNRGIYMfridndwVIDATMTGGPARYINHSCNPNc 98

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2462591113 397 -AEVRHmiADGMIHLCIYAVSAITKDAEVTIAFDYEYSNCNYKVDCAChkGNRNC 450
Cdd:cd19171    99 vAEVVT--FDKEKKIIIISNRRIAKGEELTYDYKFDFEDDQHKIPCLC--GAPNC 149
SET_SETDB-like cd10538
SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 1 (SETDB1) ...
 299-430 3.97e-08

SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 1 (SETDB1) and 2 (SETDB2), suppressor of variegation 3-9 homologs, SUV39H1 and SUV39H2, euchromatic histone-lysine N-methyltransferase EHMT1 and EHMT2, and similar proteins; The family includes SET domain bifurcated 1 (SETDB1) and 2 (SETDB2), suppressor of variegation 3-9 homologs, SUV39H1 and SUV39H2, euchromatic histone-lysine N-methyltransferase EHMT1 and EHMT2. SETDB1 (EC 2.1.1.43; also termed ERG-associated protein with SET domain (ESET), histone H3-K9 methyltransferase 4, H3-K9-HMTase 4, or lysine N-methyltransferase 1E (KMT1E)) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). It mainly functions in euchromatin regions, thereby playing a central role in the silencing of euchromatic genes. SETDB2 (EC 2.1.1.43; also termed chronic lymphocytic leukemia deletion region gene 8 protein (CLLD8), or lysine N-methyltransferase 1F (KMT1F)) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). It is involved in left-right axis specification in early development and mitosis. SUV39H1 (also termed histone H3-K9 methyltransferase 1, H3-K9-HMTase 1, lysine N-methyltransferase 1A, KMT1A, position-effect variegation 3-9 homolog, SUV39H, or Su(var)3-9 homolog 1) and SUV39H2 (also termed histone H3-K9 methyltransferase 2, H3-K9-HMTase 2, lysine N-methyltransferase 1B, KMT1B, or Su(var)3-9 homolog 2), both act as histone-lysine N-methyltransferases that specifically trimethylate 'Lys-9' of histone H3 (H3K9me3) using monomethylated H3 'Lys-9' as substrate. They mainly function in heterochromatin regions, thereby playing central roles in the establishment of constitutive heterochromatin at pericentric and telomere regions. EHMT1 (also termed Eu-HMTase1, G9a-like protein 1, GLP, GLP1, histone H3-K9 methyltransferase 5, H3-K9-HMTase 5, lysine N-methyltransferase 1D, or KMT1D) and EHMT2 (also termed Eu-HMTase2, HLA-B-associated transcript 8, histone H3-K9 methyltransferase 3, H3-K9-HMTase 3, lysine N-methyltransferase 1C, KMT1C, or protein G9a), both act as histone-lysine N-methyltransferases that specifically mono- and dimethylate 'Lys-9' of histone H3 (H3K9me1 and H3K9me2, respectively) in euchromatin. This family also includes the pre-SET domain, which is found in a number of histone methyltransferases (HMTase), N-terminal to the SET domain. Pre-SET domain is a zinc binding motif which contains 9 conserved cysteines that coordinate three zinc ions. It is thought that this region plays a structural role in stabilizing SET domains. Most family members, except for Arabidopsis thaliana SUVH9, contain a post-SET domain which harbors a zinc-binding site.


Pssm-ID: 380936 [Multi-domain]  Cd Length: 217  Bit Score: 54.68  E-value: 3.97e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 299 CNNTV--IGSQMQLQlgrVTRVQKHRKILRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFKKP---YPFVL---FYSKF 370
Cdd:cd10538    78 CKNRVvqRGLQARLQ---VFRTSKKGWGVRSLEFIPKGSFVCEYVGEVITTSEADRRGKIYDKSggsYLFDLdefSDSDG 154

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462591113 371 NGVEMCVDARTFGNDARFIRRSCTPN---AEVRHMIADGMIH-LCIYAVSAITKDAEVTiaFDY 430
Cdd:cd10538   155 DGEELCVDATFCGNVSRFINHSCDPNlfpFNVVIDHDDLRYPrIALFATRDILPGEELT--FDY 216
SET_SET1 cd20072
SET domain (including post-SET domain) found in catalytic component of the Saccharomyces ...
 325-450 9.42e-08

SET domain (including post-SET domain) found in catalytic component of the Saccharomyces cerevisiae COMPASS complex and similar proteins; The family contains mostly fungal SET domains, including SET1 found in the catalytic component of the Saccharomyces cerevisiae COMPASS (complex of proteins associated with Set1). SET1 is a histone-lysine N-methyltransferase that specifically methylates 'Lys-4' of histone H3 (H3K4me), when part of the SET1 histone methyltransferase (HMT) complex. The activity of this catalytic domain is established through forming a complex with a set of core proteins; it is extensively contacted by Cps60 (Bre2), Cps50 (Swd1), and Cps30 (Swd3).


Pssm-ID: 380998  Cd Length: 148  Bit Score: 52.04  E-value: 9.42e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 325 LRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFKKPYPF--VLFYSKFNGVemcVDARTFGNDARFIRRSCTPNAEVRHM 402
Cdd:cd20072    27 LYAMENISAKDMVIEYVGEVIRQQVADEREKRYLRQGIGssYLFRIDDDTV---VDATKKGNIARFINHCCDPNCTAKII 103

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 2462591113 403 IADGMIHLCIYAVSAITKDAEVTiaFDYEYSNCNYKVDCAChkGNRNC 450
Cdd:cd20072   104 KVEGEKRIVIYAKRDIAAGEELT--YDYKFPREEDKIPCLC--GAPNC 147
SET_KMT2B cd19207
SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2B (KMT2B) ...
 315-450 1.32e-07

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2B (KMT2B) and similar proteins; KMT2B (EC2.1.1.43; also termed lysine N-methyltransferase 2B, myeloid/lymphoid or mixed-lineage leukemia protein 4 (MLL2/MLL4), trithorax homolog 2 (TRX2), or WW domain-binding protein 7 (WBP-7)), acts as a histone methyltransferase that methylates 'Lys-4' of histone H3 (H3K4me). It is required during the transcriptionally active period of oocyte growth for the establishment and/or maintenance of bulk H3K4 trimethylation (H3K4me3), global transcriptional silencing that precedes resumption of meiosis, oocyte survival and normal zygotic genome activation.


Pssm-ID: 380984 [Multi-domain]  Cd Length: 154  Bit Score: 51.95  E-value: 1.32e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 315 VTRVQKHRKILRAARDLALDTLIIEYRGkVMLRQQFEVNGHFFKKPYPFVLFYSKFNGVEMcVDARTFGNDARFIRRSCT 394
Cdd:cd19207    18 VYRSAIHGRGLFCKRNIDAGEMVIEYSG-IVIRSVLTDKREKFYDSKGIGCYMFRIDDFDV-VDATMHGNAARFINHSCE 95

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2462591113 395 PNAEVRHMIADGMIHLCIYAVSAITKDAEVTIAFDYEYSNCNYKVDCAChkGNRNC 450
Cdd:cd19207    96 PNCYSRVIHVEGQKHIVIFALRKIYRGEELTYDYKFPIEDASNKLPCNC--GAKRC 149
SET_SETD1A cd19204
SET domain (including post-SET domain) found in SET domain-containing protein 1A (SETD1A) and ...
 314-450 1.94e-07

SET domain (including post-SET domain) found in SET domain-containing protein 1A (SETD1A) and similar proteins; SETD1A (EC2.1.1.43), also termed lysine N-methyltransferase 2F, or Set1/Ash2 histone methyltransferase complex subunit SET1, is a histone-lysine N-methyltransferase that specifically methylates 'Lys-4' of histone H3 (H3K4me), when part of the SET1 histone methyltransferase (HMT) complex, but not if the neighboring 'Lys-9' residue is already methylated. Human SET domain containing protein 1A (hSETD1A) expression occurs at a high rate in hepatocellular carcinoma patients and controls tumor metastasis in breast cancer by activating MMP expression.


Pssm-ID: 380981 [Multi-domain]  Cd Length: 153  Bit Score: 51.56  E-value: 1.94e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 314 RVTRVQKHRKILRAARDLALDTLIIEYRGKvMLRQqfeVNGHFFKKPY------PFVLFYSKFNGVemcVDARTFGNDAR 387
Cdd:cd19204    17 RFGRSRIHEWGLFAMEPIAADEMVIEYVGQ-NIRQ---VVADMREKRYvqegigSSYLFRVDHDTI---IDATKCGNLAR 89

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462591113 388 FIRRSCTPNAEVRHMIADGMIHLCIYAVSAITKDAEVTiaFDYEYSNCNYKVDCAChkGNRNC 450
Cdd:cd19204    90 FINHCCTPNCYAKVITIESQKKIVIYSKQPIGVNEEIT--YDYKFPIEDNKIPCLC--GTENC 148
SET_NSD cd19173
SET domain (including post-SET domain) found in nuclear SET domain-containing proteins, NSD1, ...
 377-450 2.59e-07

SET domain (including post-SET domain) found in nuclear SET domain-containing proteins, NSD1, NSD2, NSD3 and similar proteins; The nuclear receptor-binding SET Domain (NSD) family of histone H3 lysine 36 methyltransferases is comprised of NSD1, NSD2, and NSD3, which are primarily known to be involved in chromatin integrity and gene expression through mono-, di-, or tri-methylating lysine 36 of histone H3 (H3K36), respectively. NSD1 (EC 2.1.1.43; also termed histone-lysine N-methyltransferase H3 lysine-36 and H4 lysine-20 specific, androgen receptor coactivator 267 kDa protein (ARA267), androgen receptor-associated protein of 267 kDa, H3-K36-HMTase, H4-K20-HMTase, lysine N-methyltransferase 3B (KMT3B) or NR-binding SET domain-containing protein 1) functions as a histone-lysine N-methyltransferase that preferentially methylates 'Lys-36' of histone H3 and 'Lys-20' of histone H4. NSD2 (EC 2.1.1.43; also termed multiple myeloma SET domain-containing protein (MMSET), protein trithorax-5 (TRX5), or wolf-Hirschhorn syndrome candidate 1 protein (WHSC1)) acts as histone-lysine N-methyltransferase with histone H3 'Lys-27' (H3K27me) methyltransferase activity. NSD3 (EC 2.1.1.43; also termed protein whistle, WHSC1-like 1 isoform 9 with methyltransferase activity to lysine, Wolf-Hirschhorn syndrome candidate 1-like protein 1 (WHSC1L1), or WHSC1-like protein 1) functions as a histone-lysine N-methyltransferase that preferentially methylates 'Lys-4' and 'Lys-27' of histone H3.


Pssm-ID: 380950 [Multi-domain]  Cd Length: 142  Bit Score: 50.78  E-value: 2.59e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 377 VDARTFGNDARFIRRSCTPNAEVRHMIADGMIHLCIYAVSAITKDAEVTIafdyeysncNYKVDC------ACHKGNRNC 450
Cdd:cd19173    67 IDAGPKGNLSRFMNHSCQPNCETQKWTVNGDTRVGLFAVRDIPAGEELTF---------NYNLDClgnekkVCRCGAPNC 137
SET_EZH cd10519
SET domain found in enhancer of zeste homolog 1 (EZH1), zeste homolog 2 (EZH2) and similar ...
 334-432 3.60e-07

SET domain found in enhancer of zeste homolog 1 (EZH1), zeste homolog 2 (EZH2) and similar proteins; The family includes EZH1 and EZH2. EZH1 (EC 2.1.1.43; also termed ENX-2, or histone-lysine N-methyltransferase EZH1) is a catalytic subunit of the PRC2/EED-EZH1 complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene. EZH2 (EC 2.1.1.43; also termed lysine N-methyltransferase 6, ENX-1, or histone-lysine N-methyltransferase EZH2) is a catalytic subunit of the PRC2/EED-EZH2 complex, which methylates 'Lys-9' (H3K9me) and 'Lys-27' (H3K27me) of histone H3, leading to transcriptional repression of the affected target gene. Both, EZH1 and EZH2, can mono-, di- and trimethylate 'Lys-27' of histone H3 to form H3K27me1, H3K27me2 and H3K27me3, respectively.


Pssm-ID: 380917  Cd Length: 117  Bit Score: 49.55  E-value: 3.60e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 334 DTLIIEYRGKVMLRQQFEVNGHFFKKPYPFVLFysKFNGvEMCVDARTFGNDARFIRRSCTPNAEVRHMIADGMIHLCIY 413
Cdd:cd10519    24 DEFIGEYTGELISQDEADRRGKIYDKYNSSYLF--NLND-QFVVDATRKGNKIRFANHSSNPNCYAKVMMVNGDHRIGIF 100

                          90
                  ....*....|....*....
gi 2462591113 414 AVSAITKDAEVTiaFDYEY 432
Cdd:cd10519   101 AKRDIEAGEELF--FDYGY 117
SET cd08161
SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily; The Su(var)3-9, ...
 386-430 5.99e-07

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily; The Su(var)3-9, Enhancer-of-zeste, Trithorax (SET) domain superfamily corresponds to SET domain-containing lysine methyltransferases, which catalyze site and state-specific methylation of lysine residues in histones that are fundamental in epigenetic regulation of gene activation and silencing in eukaryotic organisms. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains has been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as N-SET and C-SET. C-SET forms an unusual and conserved knot-like structure of probable functional importance. In addition to N-SET and C-SET, an insert region (I-SET) and flanking regions of high structural variability form part of the overall structure. Some family members contain a pre-SET domain, which is found in a number of histone methyltransferases (HMTase), and a post-SET domain, which harbors a zinc-binding site.


Pssm-ID: 380914 [Multi-domain]  Cd Length: 72  Bit Score: 47.63  E-value: 5.99e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2462591113 386 ARFIRRSCTPNAEVRHMIADGMIHLCIYAVSAITKDAEVTiaFDY 430
Cdd:cd08161    29 ARFINHSCEPNCEFEEVYVGGKPRVFIVALRDIKAGEELT--VDY 71
SET_SETD1B cd19205
SET domain (including post-SET domain) found in SET domain-containing protein 1B (SETD1B) and ...
 314-450 8.28e-07

SET domain (including post-SET domain) found in SET domain-containing protein 1B (SETD1B) and similar proteins; SETD1B (EC2.1.1.43), also termed lysine N-methyltransferase 2G, is a histone-lysine N-methyltransferase that specifically methylates 'Lys-4' of histone H3 (H3K4me) when part of the SET1 histone methyltransferase (HMT) complex, but not if the neighboring 'Lys-9' residue is already methylated. Loss of SETD1B occurs in up to half the gastric and colorectal cancers, most commonly via SETD1B mutations, while de novo variants in SETD1B are associated with intellectual disability, epilepsy and autism.


Pssm-ID: 380982 [Multi-domain]  Cd Length: 153  Bit Score: 49.67  E-value: 8.28e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 314 RVTRVQKHRKILRAARDLALDTLIIEYRGKV-------MLRQQFEVNGhfFKKPYPFVLFYskfngvEMCVDARTFGNDA 386
Cdd:cd19205    17 KFCKSHIHDWGLFAMEPIAADEMVIEYVGQNirqviadMREKRYEDEG--IGSSYMFRVDH------DTIIDATKCGNFA 88

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462591113 387 RFIRRSCTPNAEVRHMIADGMIHLCIYAVSAITKDAEVTiaFDYEYSNCNYKVDCAChkGNRNC 450
Cdd:cd19205    89 RFINHSCNPNCYAKVITVESQKKIVIYSKQHINVNEEIT--YDYKFPIEDVKIPCLC--GSENC 148
SET_SUV39H cd10542
SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 ...
 314-450 1.85e-06

SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 homologs, SUV39H1, SUV39H2 and similar proteins; This family includes SUV39H1 (also termed histone H3-K9 methyltransferase 1, H3-K9-HMTase 1, lysine N-methyltransferase 1A, KMT1A, position-effect variegation 3-9 homolog, SUV39H, or Su(var)3-9 homolog 1) and SUV39H2 (also termed histone H3-K9 methyltransferase 2, H3-K9-HMTase 2, lysine N-methyltransferase 1B, KMT1B, or Su(var)3-9 homolog 2), both act as histone-lysine N-methyltransferases that specifically trimethylate 'Lys-9' of histone H3 (H3K9me3) using monomethylated H3 'Lys-9' as substrate. They mainly function in heterochromatin regions, thereby playing central roles in the establishment of constitutive heterochromatin at pericentric and telomere regions. Also included are Schizosaccharomyces pombe H3K9 methyltransferase Clr4 (SUV39H homolog) and Neurospora crassa DIM-5, both of which also methylate 'Lys-9' of histone H3.


Pssm-ID: 380940 [Multi-domain]  Cd Length: 245  Bit Score: 49.98  E-value: 1.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 314 RVtrVQKHRKI--------------LRAARDLALDTLIIEYRGKVMLRQQFEVNGHFF---KKPYpfvLFYSKFNGVEMC 376
Cdd:cd10542    79 RV--VQRGRKVplcifrtsngrgwgVKTLEDIKKGTFVMEYVGEIITSEEAERRGKIYdanGRTY---LFDLDYNDDDCE 153

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 377 --VDARTFGNDARFIRRSCTPNAEVRHMIADGMI----HLCIYAVSAITKDAEVTiaFDYEYS----------NCNYKVD 440
Cdd:cd10542   154 ytVDAAYYGNISHFINHSCDPNLAVYAVWINHLDprlpRIAFFAKRDIKAGEELT--FDYLMTgtggssestiPKPKDVR 231

                         170
                  ....*....|
gi 2462591113 441 CACHKGNRNC 450
Cdd:cd10542   232 VPCLCGSKNC 241
SET_KMT2D cd19209
SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2D (KMT2D) ...
 325-450 2.63e-06

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2D (KMT2D) and similar proteins; KMT2D (EC2.1.1.43; also termed lysine N-methyltransferase 2D, ALL1-related protein (ALR), or myeloid/lymphoid or mixed-lineage leukemia protein 2 (MLL2)), acts as histone methyltransferase that methylates 'Lys-4' of histone H3 (H3K4me). It is a coactivator for estrogen receptor by being recruited by ESR1, thereby activating transcription. KMT2D is a subunit of MLL2/3 complex, a coactivator complex of nuclear receptors, involved in transcriptional coactivation.


Pssm-ID: 380986 [Multi-domain]  Cd Length: 155  Bit Score: 48.15  E-value: 2.63e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 325 LRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFKKPYPFVLFYSKFNgvEMCVDARTFGNDARFIRRSCTPNAEVRHMIA 404
Cdd:cd19209    30 LYAAKDLEKHTMVIEYIGTIIRNEVANRREKIYEEQNRGIYMFRINN--EHVIDATLTGGPARYINHSCAPNCVAEVVTF 107

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2462591113 405 DGMIHLCIYAVSAITKDAEVTIAFDYEYSNCNYKVDCAChkGNRNC 450
Cdd:cd19209   108 DKEDKIIIISSRRIPKGEELTYDYQFDFEDDQHKIPCHC--GAWNC 151
SET_NSD3 cd19212
SET domain (including post-SET domain) found in nuclear receptor-binding SET domain-containing ...
 377-450 2.72e-06

SET domain (including post-SET domain) found in nuclear receptor-binding SET domain-containing protein 3 (NSD3) and similar proteins; NSD3 (EC 2.1.1.43; also termed protein whistle, WHSC1-like 1 isoform 9 with methyltransferase activity to lysine, Wolf-Hirschhorn syndrome candidate 1-like protein 1 (WHSC1L1), or WHSC1-like protein 1) functions as a histone-lysine N-methyltransferase that preferentially methylates 'Lys-4' and 'Lys-27' of histone H3. NSD3 is amplified and overexpressed in multiple cancer types, including acute myeloid leukemia (AML), breast, lung, pancreatic and bladder cancers, as well as squamous cell carcinoma of the head and neck (SCCHN). NSD3 contributes to tumorigenesis by interacting with bromodomain-containing protein 4 (BRD4), the bromodomain and extraterminal (BET) protein, which is a potential therapeutic target in acute myeloid leukemia (AML). NSD3 is amplified in primary tumors and cell lines from breast carcinoma, and can promote the cell viability of small-cell lung cancer and pancreatic ductal adenocarcinoma. High NSD3 expression is implicated in poor grade and heavy smoking history in SCCHN. Thus, NSD3 may serve as a potential druggable target for selective cancer therapy.


Pssm-ID: 380989 [Multi-domain]  Cd Length: 142  Bit Score: 47.61  E-value: 2.72e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 377 VDARTFGNDARFIRRSCTPNAEVRHMIADGMIHLCIYAVSAITKDAEVTIafdyeysncNYKVDC------ACHKGNRNC 450
Cdd:cd19212    67 IDAGPKGNYSRFMNHSCNPNCETQKWTVNGDVRVGLFALCDIPAGMELTF---------NYNLDClgngrtECHCGADNC 137
SET_EHMT2 cd10533
SET domain (including pre-SET and post-SET domains) found in euchromatic histone-lysine ...
 299-396 3.51e-05

SET domain (including pre-SET and post-SET domains) found in euchromatic histone-lysine N-methyltransferase 2 (EHMT2) and similar proteins; EHMT2 (also termed Eu-HMTase2, HLA-B-associated transcript 8, histone H3-K9 methyltransferase 3, H3-K9-HMTase 3, lysine N-methyltransferase 1C (KMT1C), or protein G9a) acts as a histone-lysine N-methyltransferase that specifically mono- and dimethylates 'Lys-9' of histone H3 (H3K9me1 and H3K9me2, respectively) in euchromatin.


Pssm-ID: 380931 [Multi-domain]  Cd Length: 239  Bit Score: 46.16  E-value: 3.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 299 CNNTVIGSQMQLQLgRVTRVQKHRKILRAARDLALDTLIIEYRGKVMLRQQFEVnghffKKPYPFVLFYSKFNGVEMCVD 378
Cdd:cd10533    80 CKNRVVQSGIKVRL-QLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADV-----REDDSYLFDLDNKDGEVYCID 153

                          90
                  ....*....|....*...
gi 2462591113 379 ARTFGNDARFIRRSCTPN 396
Cdd:cd10533   154 ARYYGNISRFINHLCDPN 171
SET_EHMT1 cd10535
SET domain (including pre-SET and post-SET domains) found in euchromatic histone-lysine ...
 299-396 4.02e-05

SET domain (including pre-SET and post-SET domains) found in euchromatic histone-lysine N-methyltransferase 1 (EHMT1) and similar proteins; EHMT1 (also termed Eu-HMTase1, G9a-like protein 1, GLP, GLP1, histone H3-K9 methyltransferase 5, H3-K9-HMTase 5, or lysine N-methyltransferase 1D (KMT1D)) acts as a histone-lysine N-methyltransferase that specifically mono- and dimethylates 'Lys-9' of histone H3 (H3K9me1 and H3K9me2, respectively) in euchromatin.


Pssm-ID: 380933 [Multi-domain]  Cd Length: 231  Bit Score: 46.08  E-value: 4.02e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 299 CNNTVIGSQMQLQLgRVTRVQKHRKILRAARDLALDTLIIEYRGKVMLRQQFEVNGhffKKPYPFVLfySKFNGVEMCVD 378
Cdd:cd10535    80 CRNRVVQNGLRARL-QLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVRE---EDSYLFDL--DNKDGEVYCID 153

                          90
                  ....*....|....*...
gi 2462591113 379 ARTFGNDARFIRRSCTPN 396
Cdd:cd10535   154 ARFYGNVSRFINHHCEPN 171
SET_SUV39H2 cd10532
SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 ...
 299-431 4.96e-05

SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 homolog 2 (SUV39H2) and similar proteins; SUV39H2 (EC 2.1.1.43; also termed histone H3-K9 methyltransferase 2, H3-K9-HMTase 2, lysine N-methyltransferase 1B (KMT1B), or Su(var)3-9 homolog 2) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3) using monomethylated H3 'Lys-9' as substrate. It mainly functions in heterochromatin regions, thereby playing a central role in the establishment of constitutive heterochromatin at pericentric and telomere regions.


Pssm-ID: 380930 [Multi-domain]  Cd Length: 243  Bit Score: 45.65  E-value: 4.96e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 299 CNNTVI--GSQMQLQL-----GRVTRVQKHRKILRaardlalDTLIIEYRGKVMLRQQFEVNGHFFKKPYPFVLFYSKFN 371
Cdd:cd10532    73 CPNRVVqkGTQYSLCIfrtsnGRGWGVKTLQKIKK-------NSFVMEYVGEVITSEEAERRGQFYDSKGITYLFDLDYE 145

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462591113 372 GVEMCVDARTFGNDARFIRRSCTPNAEVRHMIADGM----IHLCIYAVSAITKDAEVTiaFDYE 431
Cdd:cd10532   146 SDEFTVDAARYGNVSHFVNHSCDPNLQVFNVFIDNLdtrlPRIALFSTRTIKAGEELT--FDYQ 207
SET_NSD1 cd19210
SET domain (including post-SET domain) found in nuclear receptor-binding SET domain-containing ...
 377-450 6.43e-05

SET domain (including post-SET domain) found in nuclear receptor-binding SET domain-containing protein 1 (NSD1) and similar proteins; NSD1 (EC 2.1.1.43; also termed Histone-lysine N-methyltransferase H3 lysine-36 and H4 lysine-20 specific, androgen receptor coactivator 267 kDa protein (ARA267), androgen receptor-associated protein of 267 kDa, H3-K36-HMTase, H4-K20-HMTase, lysine N-methyltransferase 3B (KMT3B), or NR-binding SET domain-containing protein 1) functions as a histone-lysine N-methyltransferase that preferentially methylates 'Lys-36' of histone H3 and 'Lys-20' of histone H4. NSD1 is altered in approximately 10% of head and neck cancer patients with 55% decrease in risk of death in NSD1-mutated versus non-mutated patients; its disruption promotes favorable chemotherapeutic responses linked to hypomethylation.


Pssm-ID: 380987 [Multi-domain]  Cd Length: 142  Bit Score: 43.76  E-value: 6.43e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462591113 377 VDARTFGNDARFIRRSCTPNAEVRHMIADGMIHLCIYAVSAITKDAEVTIAFDYEysnC--NYKVDCAChkGNRNC 450
Cdd:cd19210    67 IDAGPKGNYARFMNHCCQPNCETQKWTVNGDTRVGLFALCDIKAGTELTFNYNLE---ClgNGKTVCKC--GAPNC 137
SET_KMT2C cd19208
SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2C (KMT2C) ...
 325-450 8.52e-05

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2C (KMT2C) and similar proteins; KMT2C (EC2.1.1.43; also termed lysine N-methyltransferase 2C, homologous to ALR protein (HALR) myeloid/lymphoid, or mixed-lineage leukemia protein 3 (MLL3)), acts as a histone methyltransferase that methylates 'Lys-4' of histone H3 (H3K4me) and may be involved in leukemogenesis and developmental disorder. KMT2C is a catalytic subunit of MLL2/3 complex, a coactivator complex of nuclear receptors, involved in transcriptional coactivation. Overexpression of KMT2C is associated with estrogen receptor-positive breast cancer; KMT2C mediates the estrogen dependence of breast cancer through regulation of estrogen receptor alpha (ERalpha) enhancer function. KMT2C is frequently mutated in certain populations with diffuse-type gastric adenocarcinomas (DGA); its loss promotes epithelial-to-mesenchymal transition (EMT) and is associated with worse overall survival.


Pssm-ID: 380985 [Multi-domain]  Cd Length: 154  Bit Score: 43.85  E-value: 8.52e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 325 LRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFKKPYPFVLFYSKFNgvEMCVDARTFGNDARFIRRSCTPNAEVRHMIA 404
Cdd:cd19208    29 LYAARDIEKHTMVIEYIGTIIRNEVANRKEKLYESQNRGVYMFRIDN--DHVIDATLTGGPARYINHSCAPNCVAEVVTF 106

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2462591113 405 DGMIHLCIYAVSAITKDAEVTIAFDYEYSNCNYKVDCAChkGNRNC 450
Cdd:cd19208   107 EKGHKIIISSSRRIQKGEELCYDYKFDFEDDQHKIPCHC--GAVNC 150
SET_NSD2 cd19211
SET domain (including post-SET domain) found in nuclear SET domain-containing protein 2 (NSD2) ...
 377-450 1.18e-04

SET domain (including post-SET domain) found in nuclear SET domain-containing protein 2 (NSD2) and similar proteins; NSD2 (EC 2.1.1.43; also termed multiple myeloma SET domain-containing protein (MMSET), protein trithorax-5 (TRX5), or wolf-Hirschhorn syndrome candidate 1 protein (WHSC1)) acts as histone-lysine N-methyltransferase with histone H3 'Lys-36' (H3K36me) methyltransferase activity. NSD2 has been shown to mediate di- and trimethylation of H3K36 and dimethylation of H4K20 in different systems, and has been characterized as a transcriptional repressor interacting with histone deacetylase HDAC1 and histone demethylase LSD1. NSD2 mediates constitutive NF-kappaB signaling for cancer cell proliferation, survival and tumor growth. It is highly overexpressed in several types of human cancers, including small-cell lung cancers, neuroblastoma, carcinomas of stomach and colon, and bladder cancers, and its overexpression tends to be associated with tumor aggressiveness. WHSC1 is frequently deleted in Wolf-Hirschhorn syndrome (WHS).


Pssm-ID: 380988 [Multi-domain]  Cd Length: 142  Bit Score: 43.06  E-value: 1.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 377 VDARTFGNDARFIRRSCTPNAEVRHMIADGMIHLCIYAVSAITKDAEVTIafdyeysncNYKVDC------ACHKGNRNC 450
Cdd:cd19211    67 IDAGPKGNYSRFMNHSCQPNCETQKWTVNGDTRVGLFAVCDIPAGTELTF---------NYNLDClgnektVCRCGAPNC 137
SET_SUV39H_Clr4-like cd20073
SET domain (including pre-SET and post-SET domains) found in of Schizosaccharomyces pombe H3K9 ...
 297-450 1.65e-04

SET domain (including pre-SET and post-SET domains) found in of Schizosaccharomyces pombe H3K9 methyltransferase Clr4, and similar proteins; This subfamily contains fission yeast Schizosaccharomyces pombe H3K9 methyltransferase Clr4 (also known as Suv39h), the sole homolog of the mammalian SUV39H1 and SUV39H2 enzymes, that has a critical role in preventing aberrant heterochromatin formation. It is known to di- and tri-methylate Lys-9 of histone H3, a central heterochromatic histone modification, with its specificity profile most similar to that of the human SUV39H2 homolog.


Pssm-ID: 380999 [Multi-domain]  Cd Length: 259  Bit Score: 44.48  E-value: 1.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 297 LACNNTVI--GSQMQLQLGRVtrvqKHRKI-LRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFKK---PYPFVL-FYSK 369
Cdd:cd20073    80 INCPNRVVqrGRKLPLEIFKT----KHKGWgLRCPRFIKAGTFIGVYLGEVITQSEAEIRGKKYDNvgvTYLFDLdLFED 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 370 FNGVEMCVDARTFGNDARFIRRSCTPNAEVRHMIAD----GMIHLCIYAVSAITKDAEVTiaFDYEYSN----------- 434
Cdd:cd20073   156 QVDEYYTVDAQYCGDVTRFINHSCDPNLAIYSVLRDksdsKIYDLAFFAIKDIPALEELT--FDYSGRNnfdqlgfignr 233

                         170       180
                  ....*....|....*....|.
gi 2462591113 435 -----CNYKVDCACHKGNRNC 450
Cdd:cd20073   234 snskyINLKNKRPCYCGSANC 254
SET_EHMT cd10543
SET domain (including pre-SET and post-SET domains) found in euchromatic histone-lysine ...
 299-443 2.35e-04

SET domain (including pre-SET and post-SET domains) found in euchromatic histone-lysine N-methyltransferase EHMT1, EHMT2 and similar proteins; This family includes EHMT1 (also termed Eu-HMTase1, G9a-like protein 1, GLP, GLP1, histone H3-K9 methyltransferase 5, H3-K9-HMTase 5, lysine N-methyltransferase 1D, or KMT1D) and EHMT2 (also termed Eu-HMTase2, HLA-B-associated transcript 8, histone H3-K9 methyltransferase 3, H3-K9-HMTase 3, lysine N-methyltransferase 1C, KMT1C, or protein G9a), both act as histone-lysine N-methyltransferases that specifically mono- and dimethylate 'Lys-9' of histone H3 (H3K9me1 and H3K9me2, respectively) in euchromatin.


Pssm-ID: 380941 [Multi-domain]  Cd Length: 231  Bit Score: 43.48  E-value: 2.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 299 CNNTVIgsqmqlQLGRVTRVQKHRKI-----LRAARDLALDTLIIEYRGKVM------LRQQ----FEVNGHffkkpypf 363
Cdd:cd10543    80 CRNRVV------QNGIRYRLQLFRTRgmgwgVRALQDIPKGTFVCEYIGELIsdseadSREDdsylFDLDNK-------- 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 364 vlfyskfNGVEMCVDARTFGNDARFIRRSCTPNA-EVRHMIAdgmiH-------LCIYAVSAITKDAEvtIAFDY--EYS 433
Cdd:cd10543   146 -------DGETYCIDARRYGNISRFINHLCEPNLiPVRVFVE----HqdlrfprIAFFASRDIKAGEE--LGFDYgeKFW 212

                         170
                  ....*....|.
gi 2462591113 434 NCNYK-VDCAC 443
Cdd:cd10543   213 RIKGKyFTCRC 223
SET_AtSUVH-like cd10545
SET domain found in Arabidopsis thaliana histone H3-K9 methyltransferases (SUVHs) and similar ...
 373-432 3.01e-04

SET domain found in Arabidopsis thaliana histone H3-K9 methyltransferases (SUVHs) and similar proteins; Arabidopsis thaliana SUVH protein (also termed suppressor of variegation 3-9 homolog protein) is a histone-lysine N-methyltransferase that methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression. Some family members contain a post-SET domain which binds a Zn2+ ion. Most family members, except for Arabidopsis thaliana SUVH9, contain a post-SET domain which harbors a zinc-binding site.


Pssm-ID: 380943 [Multi-domain]  Cd Length: 232  Bit Score: 43.16  E-value: 3.01e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462591113 373 VEMCVDARTFGNDARFIRRSCTPNAEVRHMIADG----MIHLCIYAVSAITKDAEVTiaFDYEY 432
Cdd:cd10545   171 SEFTIDAGSFGNVARFINHSCSPNLFVQCVLYDHndlrLPRVMLFAADNIPPLQELT--YDYGY 232
SET_SETD8 cd10528
SET domain found in SET domain-containing protein 8 (SETD8) and similar proteins; SETD8 (EC 2. ...
 327-430 3.30e-04

SET domain found in SET domain-containing protein 8 (SETD8) and similar proteins; SETD8 (EC 2.1.1.43; also termed N-lysine methyltransferase KMT5A, H4-K20-HMTase KMT5A, lysine N-methyltransferase 5A, lysine-specific methylase 5A, PR/SET domain-containing protein 07, PR-Set7 or PR/SET07) is a nucleosomal histone-lysine N-methyltransferase that specifically monomethylates 'Lys-20' of histone H4 (H4K20me1). It plays a central role in the silencing of euchromatic genes.


Pssm-ID: 380926 [Multi-domain]  Cd Length: 141  Bit Score: 41.79  E-value: 3.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 327 AARDLALDTLIIEYRGKVMLRQQFEVNGHFFKKpYPFV---LFYSKFNGVEMCVDARTF-GNDARFIRRSCT-PNAEVRH 401
Cdd:cd10528    33 ATRPFEKGDFVVEYHGDLITITEAKKREALYAK-DPSTgcyMYYFQYKGKTYCVDATKEsGRLGRLINHSKKkPNLKTKL 111

                          90       100
                  ....*....|....*....|....*....
gi 2462591113 402 MIADGMIHLCIYAVSAITKDAEVTiaFDY 430
Cdd:cd10528   112 LVIDGVPHLILVAKRDIKPGEELL--YDY 138
SET_EZH2 cd19218
SET domain found in enhancer of zeste homolog 2 (EZH2) and similar proteins; EZH2 (EC 2.1.1.43) ...
 336-432 1.56e-03

SET domain found in enhancer of zeste homolog 2 (EZH2) and similar proteins; EZH2 (EC 2.1.1.43), also termed lysine N-methyltransferase 6, or ENX-1, or histone-lysine N-methyltransferase EZH2, is a catalytic subunit of the polycomb repressive complex 2 (PRC2)/EED-EZH2 complex, which methylates 'Lys-9' (H3K9me) and 'Lys-27' (H3K27me) of histone H3, leading to transcriptional repression of the affected target gene. It can mono-, di- and trimethylate 'Lys-27' of histone H3 to form H3K27me1, H3K27me2 and H3K27me3, respectively. PRC2 is involved in several cancers; EZH2 is overexpressed in breast, liver and prostate cancer, while point mutations in EZH2 alter the substrate preference and product specificity of PRC2 in Non-Hodgkin lymphomas (NHLs). Thus, PRC2 is a popular target for cancer therapeutics.


Pssm-ID: 380995  Cd Length: 120  Bit Score: 39.13  E-value: 1.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 336 LIIEYRGKVMLRQQFEVNGHFFKKPYPFVLFysKFNGvEMCVDARTFGNDARFIRRSCTPNAEVRHMIADGMIHLCIYAV 415
Cdd:cd19218    29 FISEYCGEIISQDEADRRGKVYDKYMCSFLF--NLNN-DFVVDATRKGNKIRFANHSVNPNCYAKVMMVNGDHRIGIFAK 105

                          90
                  ....*....|....*..
gi 2462591113 416 SAITKDAEvtIAFDYEY 432
Cdd:cd19218   106 RAIQTGEE--LFFDYRY 120
SET_SETDB cd10541
SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 1 (SETDB1), ...
 299-443 1.86e-03

SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 1 (SETDB1), SET domain bifurcated 2 (SETDB2), and similar proteins; SETDB1 (EC 2.1.1.43; also termed ERG-associated protein with SET domain (ESET), histone H3-K9 methyltransferase 4, H3-K9-HMTase 4, or lysine N-methyltransferase 1E (KMT1E)) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). It mainly functions in euchromatin regions, thereby playing a central role in the silencing of euchromatic genes. SETDB2 (EC 2.1.1.43; also termed chronic lymphocytic leukemia deletion region gene 8 protein (CLLD8), or lysine N-methyltransferase 1F (KMT1F)) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). It is involved in left-right axis specification in early development and mitosis.


Pssm-ID: 380939 [Multi-domain]  Cd Length: 236  Bit Score: 40.99  E-value: 1.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 299 CNNTVIGSQMQLQLgRVTRVQKHRKILRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFKKPYpfvlfYSKFNGVE---M 375
Cdd:cd10541    81 CQNRLVQHGLQVRL-QLFKTQNKGWGIRCLDDIAKGTFVCIYAGKILTDDFADKEGLEMGDEY-----FANLDHIEescY 154

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462591113 376 CVDARTFGNDARFIRRSCTPNAEVRHMIADgmIH------LCIYAVSAITKDAEVTIAFDYEYSNCNYKVD-CAC 443
Cdd:cd10541   155 IIDAKLEGNLGRYLNHSCSPNLFVQNVFVD--THdlrfpwVAFFASKRIKAGTELTWDYNYEVGSVEGKELlCCC 227
SET_EZH1 cd19217
SET domain found in enhancer of zeste homolog 1 (EZH1) and similar proteins; EZH1 (EC 2.1.1.43) ...
 334-436 1.89e-03

SET domain found in enhancer of zeste homolog 1 (EZH1) and similar proteins; EZH1 (EC 2.1.1.43), also termed ENX-2, or histone-lysine N-methyltransferase EZH1, is a catalytic subunit of the PRC2/EED-EZH1 complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene. It can mono-, di- and trimethylate 'Lys-27' of histone H3 to form H3K27me1, H3K27me2 and H3K27me3, respectively.


Pssm-ID: 380994  Cd Length: 136  Bit Score: 39.28  E-value: 1.89e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 334 DTLIIEYRGKVMLRQQFEVNGHFFKKPYPFVLFysKFNGvEMCVDARTFGNDARFIRRSCTPNAEVRHMIADGMIHLCIY 413
Cdd:cd19217    29 NEFISEYCGELISQDEADRRGKVYDKYMSSFLF--NLNN-DFVVDATRKGNKIRFANHSVNPNCYAKVVMVNGDHRIGIF 105

                          90       100
                  ....*....|....*....|...
gi 2462591113 414 AVSAITKDAEvtIAFDYEYSNCN 436
Cdd:cd19217   106 AKRAIQQGEE--LFFDYRYSQAD 126
COG5644 COG5644
U3 small nucleolar RNA-associated protein 14 [Function unknown];
473-693 2.28e-03

U3 small nucleolar RNA-associated protein 14 [Function unknown];


Pssm-ID: 227931 [Multi-domain]  Cd Length: 869  Bit Score: 41.61  E-value: 2.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 473 TIGAETRR------RKARRKELEMEQQNEASEENNDQQS-QEVPEKVTVSSDHEEVDNPEEKPEEEKEEVIDDQENlahs 545
Cdd:COG5644   457 SHGEGTREavneqiRKGDELMQRIHGKEIMDGEDVSEFSdSDYDTNEQVSTAFEKIRNEEELKGVLGMKFMRDASN---- 532

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 546 RRTREDRKVEAIMHAFENLEKRKKRRDQPLEQSNsdVEITTTTSE-TPVGEETKTEAPESEVSNSVSnvtiPSTPQSVGV 624
Cdd:COG5644   533 RQMAASKISVADLVKVENGDDIDVGELDEVGGDA--IYANAGRREvFPVVEQRRKLAPRKRKEDFVT----PSTSLEKSM 606

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 625 NTRRSSQAGDIAAEKLVPKPPPA----KPSRPRPKSRISRYRTSSAQRLKRQKQA--------NAQQAELSQAALEEGGS 692
Cdd:COG5644   607 DRILHGQKKRAEGAVVFEKPLEAtenfNPWLDRKMRRIKRIKKKAYRRIRRDKRLkkkmpeeeNTQENHLGSEKKRHGGV 686


                  .
gi 2462591113 693 N 693
Cdd:COG5644   687 P 687
SET_SUV39H1 cd10525
SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 ...
 334-430 2.79e-03

SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 homolog 1 (SUV39H1) and similar proteins; SUV39H1 (EC 2.1.1.43; also termed histone H3-K9 methyltransferase 1, H3-K9-HMTase 1, lysine N-methyltransferase 1A (KMT1A), position-effect variegation 3-9 homolog (SUV39H), or Su(var)3-9 homolog 1) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3) using monomethylated H3 'Lys-9' as substrate. It mainly functions in heterochromatin regions, thereby playing a central role in the establishment of constitutive heterochromatin at pericentric and telomere regions.


Pssm-ID: 380923 [Multi-domain]  Cd Length: 255  Bit Score: 40.65  E-value: 2.79e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 334 DTLIIEYRGKVMLRQQFEVNGHFFKKPYPFVLFYSKFNGVEMCVDARTFGNDARFIRRSCTPNAEVRHMIADG----MIH 409
Cdd:cd10525   110 NSFVMEYVGEIITSEEAERRGQIYDRQGATYLFDLDYVEDVYTVDAAYYGNISHFVNHSCDPNLQVYNVFIDNlderLPR 189

                          90       100
                  ....*....|....*....|.
gi 2462591113 410 LCIYAVSAITKDAEVTiaFDY 430
Cdd:cd10525   190 IALFATRTIRAGEELT--FDY 208
SET_SMYD cd20071
SET domain (including SET domain and post-SET domain) found in SET and MYND domain-containing ...
 365-445 5.86e-03

SET domain (including SET domain and post-SET domain) found in SET and MYND domain-containing protein, and similar proteins; The family includes SET and MYND domain-containing proteins, SMYD1-SYMD5. SMYD1 (EC 2.1.1.43; also termed BOP) is a heart and muscle specific SET-MYND domain containing protein, which functions as a histone methyltransferase and regulates downstream gene transcription. It methylates histone H3 at 'Lys-4' (H3K4me), seems able to perform both mono-, di-, and trimethylation. SMYD2 (also termed HSKM-B, or lysine N-methyltransferase 3C (KMT3C)) functions as a histone methyltransferase that methylates both histones and non-histone proteins, including p53/TP53 and RB1. It specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). SMYD3 (also termed zinc finger MYND domain-containing protein 1) functions as a histone methyltransferase that specifically methylates 'Lys-4' of histone H3, inducing di- and tri-methylation, but not monomethylation. It also methylates 'Lys-5' of histone H4. SMYD3 plays an important role in transcriptional activation as a member of an RNA polymerase complex. SMYD4 functions as a potential tumor suppressor that plays a critical role in breast carcinogenesis at least partly through inhibiting the expression of PDGFR-alpha. SMYD5 (also termed protein NN8-4AG, or retinoic acid-induced protein 15) functions as histone lysine methyltransferase that mediates H4K20me3 at heterochromatin regions.


Pssm-ID: 380997 [Multi-domain]  Cd Length: 122  Bit Score: 37.74  E-value: 5.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462591113 365 LFYSKFNGVEMCVDARTFGN----DARFIRRSCTPNAEVRHmiaDGMIHLCIYAVSAITKDAEVTIAFDYEYSN------ 434
Cdd:cd20071    31 LVSVPSNSFSLTDGLNEIGVglfpLASLLNHSCDPNAVVVF---DGNGTLRVRALRDIKAGEELTISYIDPLLPrterrr 107

                          90
                  ....*....|....
gi 2462591113 435 ---CNYKVDCACHK 445
Cdd:cd20071   108 ellEKYGFTCSCPR 121
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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