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Conserved domains on  [gi|2462517570|ref|XP_054221049|]
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zinc finger protein 438 isoform X5 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG5048 super family cl34881
FOG: Zn-finger [General function prediction only];
47-126 4.64e-03

FOG: Zn-finger [General function prediction only];


The actual alignment was detected with superfamily member COG5048:

Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 38.91  E-value: 4.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462517570  47 QDNSSSPKPSSVFRNGFSGIKKPWHrCHVCNHHFQFKQHLRDHMNTHTNRRPYSCR--ICRKSYVRPGSLSTHMKLHHGE 124
Cdd:COG5048    11 SNNSVLSSTPKSTLKSLSNAPRPDS-CPNCTDSFSRLEHLTRHIRSHTGEKPSQCSysGCDKSFSRPLELSRHLRTHHNN 89


                  ..
gi 2462517570 125 NR 126
Cdd:COG5048    90 PS 91
 
Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
47-126 4.64e-03

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 38.91  E-value: 4.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462517570  47 QDNSSSPKPSSVFRNGFSGIKKPWHrCHVCNHHFQFKQHLRDHMNTHTNRRPYSCR--ICRKSYVRPGSLSTHMKLHHGE 124
Cdd:COG5048    11 SNNSVLSSTPKSTLKSLSNAPRPDS-CPNCTDSFSRLEHLTRHIRSHTGEKPSQCSysGCDKSFSRPLELSRHLRTHHNN 89


                  ..
gi 2462517570 125 NR 126
Cdd:COG5048    90 PS 91
 
Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
47-126 4.64e-03

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 38.91  E-value: 4.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462517570  47 QDNSSSPKPSSVFRNGFSGIKKPWHrCHVCNHHFQFKQHLRDHMNTHTNRRPYSCR--ICRKSYVRPGSLSTHMKLHHGE 124
Cdd:COG5048    11 SNNSVLSSTPKSTLKSLSNAPRPDS-CPNCTDSFSRLEHLTRHIRSHTGEKPSQCSysGCDKSFSRPLELSRHLRTHHNN 89


                  ..
gi 2462517570 125 NR 126
Cdd:COG5048    90 PS 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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