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Conserved domains on  [gi|56606125|ref|NP_001008394|]
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renal cancer differentiation gene 1 protein [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RCDG1 super family cl24331
Renal cancer differentiation gene 1 protein; This family includes human protein C4orf46, also ...
 5-87 8.68e-31

Renal cancer differentiation gene 1 protein; This family includes human protein C4orf46, also known as renal cancer differentiation gene 1 protein (RCDG1).


The actual alignment was detected with superfamily member pfam15725:

Pssm-ID: 292353  Cd Length: 83  Bit Score: 104.53  E-value: 8.68e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56606125     5 EELQVSSPPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTVDQLEEVELQIGDAAFSLTKLLEATSAVSAQVEEL 84
Cdd:pfam15725   1 EEARASPPPPPPPSSPSSRAAASSSSPELPVSLGWRIPSRSQAPTVDPLEEVELQIGDAAFSLTKLLEATSAVSAQVEEL 80


                  ...
gi 56606125    85 AFK 87
Cdd:pfam15725  81 AFK 83
 
Name Accession Description Interval E-value
RCDG1 pfam15725
Renal cancer differentiation gene 1 protein; This family includes human protein C4orf46, also ...
 5-87 8.68e-31

Renal cancer differentiation gene 1 protein; This family includes human protein C4orf46, also known as renal cancer differentiation gene 1 protein (RCDG1).


Pssm-ID: 292353  Cd Length: 83  Bit Score: 104.53  E-value: 8.68e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56606125     5 EELQVSSPPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTVDQLEEVELQIGDAAFSLTKLLEATSAVSAQVEEL 84
Cdd:pfam15725   1 EEARASPPPPPPPSSPSSRAAASSSSPELPVSLGWRIPSRSQAPTVDPLEEVELQIGDAAFSLTKLLEATSAVSAQVEEL 80


                  ...
gi 56606125    85 AFK 87
Cdd:pfam15725  81 AFK 83
 
Name Accession Description Interval E-value
RCDG1 pfam15725
Renal cancer differentiation gene 1 protein; This family includes human protein C4orf46, also ...
 5-87 8.68e-31

Renal cancer differentiation gene 1 protein; This family includes human protein C4orf46, also known as renal cancer differentiation gene 1 protein (RCDG1).


Pssm-ID: 292353  Cd Length: 83  Bit Score: 104.53  E-value: 8.68e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56606125     5 EELQVSSPPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTVDQLEEVELQIGDAAFSLTKLLEATSAVSAQVEEL 84
Cdd:pfam15725   1 EEARASPPPPPPPSSPSSRAAASSSSPELPVSLGWRIPSRSQAPTVDPLEEVELQIGDAAFSLTKLLEATSAVSAQVEEL 80


                  ...
gi 56606125    85 AFK 87
Cdd:pfam15725  81 AFK 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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