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Conserved domains on  [gi|61557424|ref|NP_001013265|]
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sarcolipin [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Sarcolipin cd20253
Sarcolipin bioactive peptide and similar proteins; Vertebrate sarcolipin (SLN) belongs to a ...
2-31 4.93e-06

Sarcolipin bioactive peptide and similar proteins; Vertebrate sarcolipin (SLN) belongs to a family of bioactive peptides which includes phospholamban (PLN), and invertebrate sarcolamban (SCL). SCLA and SCLB are encoded within a single putative noncoding transcript, pncr003:2L; PLN and SLN are each encoded within a single exon of a spliced transcript. PLN is chiefly expressed in the cardiac muscle, while SLN is expressed in the atria of the heart and embryonic slow-type skeletal muscle; SCL is found in cardiac and somatic muscle of Drosophila melanogaster. PLN and SLN are each a single-pass transmembrane alpha-helix that interacts directly with the sarcoplasmic reticulum (SR) calcium pump (SERCA), lower its affinity for Ca2+, thereby decreasing the rate of Ca2+ reuptake into the SR from the sarcoplasm. In the heart, PLN and SLN inhibit the activity of SERCA2a isoform and function as important regulators of cardiac contractibility and disease. SCLA and SCLB are each predicted to form a single-pass transmembrane helix, localize to the SR with the SR calcium pump (Ca-P60A), and dampen its activity. PLN and SLN differ in their interaction with SERCA. SLN in skeletal muscle has also been shown to amplify calcineurin signaling, and is a potential therapeutic target for the management of muscular dystrophy, as it is upregulated in the skeletal muscle of the classical mouse model for Duchenne muscular dystrophy.


:

Pssm-ID: 380751  Cd Length: 30  Bit Score: 37.09  E-value: 4.93e-06
                       10        20        30
               ....*....|....*....|....*....|
gi 61557424  2 ERSTQELFINFTVVLITVLLMWLLVRSYQY 31
Cdd:cd20253  1 ERSTQELFLNFTVVLITVLLMWLLVRSYQY 30
 
Name Accession Description Interval E-value
Sarcolipin cd20253
Sarcolipin bioactive peptide and similar proteins; Vertebrate sarcolipin (SLN) belongs to a ...
2-31 4.93e-06

Sarcolipin bioactive peptide and similar proteins; Vertebrate sarcolipin (SLN) belongs to a family of bioactive peptides which includes phospholamban (PLN), and invertebrate sarcolamban (SCL). SCLA and SCLB are encoded within a single putative noncoding transcript, pncr003:2L; PLN and SLN are each encoded within a single exon of a spliced transcript. PLN is chiefly expressed in the cardiac muscle, while SLN is expressed in the atria of the heart and embryonic slow-type skeletal muscle; SCL is found in cardiac and somatic muscle of Drosophila melanogaster. PLN and SLN are each a single-pass transmembrane alpha-helix that interacts directly with the sarcoplasmic reticulum (SR) calcium pump (SERCA), lower its affinity for Ca2+, thereby decreasing the rate of Ca2+ reuptake into the SR from the sarcoplasm. In the heart, PLN and SLN inhibit the activity of SERCA2a isoform and function as important regulators of cardiac contractibility and disease. SCLA and SCLB are each predicted to form a single-pass transmembrane helix, localize to the SR with the SR calcium pump (Ca-P60A), and dampen its activity. PLN and SLN differ in their interaction with SERCA. SLN in skeletal muscle has also been shown to amplify calcineurin signaling, and is a potential therapeutic target for the management of muscular dystrophy, as it is upregulated in the skeletal muscle of the classical mouse model for Duchenne muscular dystrophy.


Pssm-ID: 380751  Cd Length: 30  Bit Score: 37.09  E-value: 4.93e-06
                       10        20        30
               ....*....|....*....|....*....|
gi 61557424  2 ERSTQELFINFTVVLITVLLMWLLVRSYQY 31
Cdd:cd20253  1 ERSTQELFLNFTVVLITVLLMWLLVRSYQY 30
Sarcolipin pfam05366
Sarcolipin; Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase ...
1-31 5.44e-06

Sarcolipin; Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle.


Pssm-ID: 368407  Cd Length: 31  Bit Score: 36.80  E-value: 5.44e-06
                         10        20        30
                 ....*....|....*....|....*....|.
gi 61557424    1 MERSTQELFINFTVVLITVLLMWLLVRSYQY 31
Cdd:pfam05366  1 MERSTRELFLNFTVVLITVILMWLLVRSYQY 31
 
Name Accession Description Interval E-value
Sarcolipin cd20253
Sarcolipin bioactive peptide and similar proteins; Vertebrate sarcolipin (SLN) belongs to a ...
2-31 4.93e-06

Sarcolipin bioactive peptide and similar proteins; Vertebrate sarcolipin (SLN) belongs to a family of bioactive peptides which includes phospholamban (PLN), and invertebrate sarcolamban (SCL). SCLA and SCLB are encoded within a single putative noncoding transcript, pncr003:2L; PLN and SLN are each encoded within a single exon of a spliced transcript. PLN is chiefly expressed in the cardiac muscle, while SLN is expressed in the atria of the heart and embryonic slow-type skeletal muscle; SCL is found in cardiac and somatic muscle of Drosophila melanogaster. PLN and SLN are each a single-pass transmembrane alpha-helix that interacts directly with the sarcoplasmic reticulum (SR) calcium pump (SERCA), lower its affinity for Ca2+, thereby decreasing the rate of Ca2+ reuptake into the SR from the sarcoplasm. In the heart, PLN and SLN inhibit the activity of SERCA2a isoform and function as important regulators of cardiac contractibility and disease. SCLA and SCLB are each predicted to form a single-pass transmembrane helix, localize to the SR with the SR calcium pump (Ca-P60A), and dampen its activity. PLN and SLN differ in their interaction with SERCA. SLN in skeletal muscle has also been shown to amplify calcineurin signaling, and is a potential therapeutic target for the management of muscular dystrophy, as it is upregulated in the skeletal muscle of the classical mouse model for Duchenne muscular dystrophy.


Pssm-ID: 380751  Cd Length: 30  Bit Score: 37.09  E-value: 4.93e-06
                       10        20        30
               ....*....|....*....|....*....|
gi 61557424  2 ERSTQELFINFTVVLITVLLMWLLVRSYQY 31
Cdd:cd20253  1 ERSTQELFLNFTVVLITVLLMWLLVRSYQY 30
Sarcolipin pfam05366
Sarcolipin; Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase ...
1-31 5.44e-06

Sarcolipin; Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle.


Pssm-ID: 368407  Cd Length: 31  Bit Score: 36.80  E-value: 5.44e-06
                         10        20        30
                 ....*....|....*....|....*....|.
gi 61557424    1 MERSTQELFINFTVVLITVLLMWLLVRSYQY 31
Cdd:pfam05366  1 MERSTRELFLNFTVVLITVILMWLLVRSYQY 31
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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