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Conserved domains on  [gi|71980922|ref|NP_001021004|]
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Nucleolar protein dao-5 [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SRP40_C super family cl04891
SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae ...
 897-966 3.36e-09

SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae SRP40 protein and its homologs. SRP40/nopp40 is a chaperone involved in nucleocytoplasmic transport. SRP40 is also a suppressor of mutant AC40 subunit of RNA polymerase I and III.


The actual alignment was detected with superfamily member pfam05022:

Pssm-ID: 461525  Cd Length: 75  Bit Score: 54.08  E-value: 3.36e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 71980922   897 PFRRVQMTKDSV--SEKFRNNQHDSHF--DQWGQRANESLGKVVGKAFRHEKTKKKKGSYGGGPIN-QSINSIKF 966
Cdd:pfam05022   1 PFQRVDPEDVVVfaDPRLADNSYEAKGaeDDYGEKANEDLIVTRGKGFRKEKNKKKRGSYRGGAIDtNSVNSIKF 75
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
389-606 3.57e-08

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK12323:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 700  Bit Score: 57.58  E-value: 3.57e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  389 TPAKATPKPVAKKAESSSDSsddekkPVAKPTSAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDS 468
Cdd:PRK12323 373 GPATAAAAPVAQPAPAAAAP------AAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGG 446

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  469 SDDEKPAAKSTPAKITPKPTAKKVASSSSDSSDDEKK-PAAKPTPANATPKPVAKKAESSSDSSDDEKKPVAKPTSAKAT 547
Cdd:PRK12323 447 APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAaPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESI 526

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 71980922  548 PKPAAKKADlssdfsdDEAPAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPAKTT 606
Cdd:PRK12323 527 PDPATADPD-------DAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFD 578
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
245-457 1.71e-06

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK12323:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 700  Bit Score: 51.80  E-value: 1.71e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  245 VVKKAESSSDSSDDEKKPVAKPAPAKATPKPAAKKAdsssdssddEAPAKKTPAKAApKPVAKKAESSSDSSDDEKKPAA 324
Cdd:PRK12323 385 PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVA---------AAPARRSPAPEA-LAAARQASARGPGGAPAPAPAP 454

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  325 KPTPAKATPKPVAKKAESSSDSSDDE--KKPVAKPAPAKATPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPKPVAKKA 402
Cdd:PRK12323 455 AAAPAAAARPAAAGPRPVAAAAAAAParAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADP 534

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 71980922  403 ESSSDSSDDEKKPVAKPTSAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKP 457
Cdd:PRK12323 535 DDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLP 589
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 445-886 1.40e-05

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.55  E-value: 1.40e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   445 PAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPAKITPKPTAKKVASSSSDSSDDEKKPAAKPTPANATPKPVAKKA 524
Cdd:PHA03247 2551 PPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPS 2630

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   525 ESSSDSSDDEKKPVAKPTSAKATPKPAAKKADLSSDFSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPAk 604
Cdd:PHA03247 2631 PSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPE- 2709

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   605 ttPKPTAKKAASSSSDSSDDEKKPVAKPTSAKATPKPAAKKADSSSDSSDDEAPAKKTPVKPTPVKIVAKKvdsssdssd 684
Cdd:PHA03247 2710 --PAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAG--------- 2778

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   685 dekkPTKATPVKVTPKSVTKKAAASSSDSSDDEKKPVVKQTPNVVPKKEKAASSSDDssddekkPTAKPTPKATPKQSAK 764
Cdd:PHA03247 2779 ----PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP-------TSAQPTAPPPPPGPPP 2847

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   765 KADSSDDSSDDEAP-AKKTPAKSTPAKTAVkkeassssddssddektkkkSATTPAKSTPKTALKKAESSDSSDDDEDLP 843
Cdd:PHA03247 2848 PSLPLGGSVAPGGDvRRRPPSRSPAAKPAA--------------------PARPPVRRLARPAVSRSTESFALPPDQPER 2907

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|...
gi 71980922   844 KPSKAVTPRPQRADSEESAETEESSSRTPALKAKPLATSTEKA 886
Cdd:PHA03247 2908 PPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPA 2950
 
Name Accession Description Interval E-value
SRP40_C pfam05022
SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae ...
 897-966 3.36e-09

SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae SRP40 protein and its homologs. SRP40/nopp40 is a chaperone involved in nucleocytoplasmic transport. SRP40 is also a suppressor of mutant AC40 subunit of RNA polymerase I and III.


Pssm-ID: 461525  Cd Length: 75  Bit Score: 54.08  E-value: 3.36e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 71980922   897 PFRRVQMTKDSV--SEKFRNNQHDSHF--DQWGQRANESLGKVVGKAFRHEKTKKKKGSYGGGPIN-QSINSIKF 966
Cdd:pfam05022   1 PFQRVDPEDVVVfaDPRLADNSYEAKGaeDDYGEKANEDLIVTRGKGFRKEKNKKKRGSYRGGAIDtNSVNSIKF 75
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
389-606 3.57e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 57.58  E-value: 3.57e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  389 TPAKATPKPVAKKAESSSDSsddekkPVAKPTSAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDS 468
Cdd:PRK12323 373 GPATAAAAPVAQPAPAAAAP------AAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGG 446

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  469 SDDEKPAAKSTPAKITPKPTAKKVASSSSDSSDDEKK-PAAKPTPANATPKPVAKKAESSSDSSDDEKKPVAKPTSAKAT 547
Cdd:PRK12323 447 APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAaPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESI 526

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 71980922  548 PKPAAKKADlssdfsdDEAPAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPAKTT 606
Cdd:PRK12323 527 PDPATADPD-------DAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFD 578
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
245-457 1.71e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 51.80  E-value: 1.71e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  245 VVKKAESSSDSSDDEKKPVAKPAPAKATPKPAAKKAdsssdssddEAPAKKTPAKAApKPVAKKAESSSDSSDDEKKPAA 324
Cdd:PRK12323 385 PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVA---------AAPARRSPAPEA-LAAARQASARGPGGAPAPAPAP 454

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  325 KPTPAKATPKPVAKKAESSSDSSDDE--KKPVAKPAPAKATPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPKPVAKKA 402
Cdd:PRK12323 455 AAAPAAAARPAAAGPRPVAAAAAAAParAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADP 534

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 71980922  403 ESSSDSSDDEKKPVAKPTSAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKP 457
Cdd:PRK12323 535 DDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLP 589
PHA03247 PHA03247
large tegument protein UL36; Provisional
 445-886 1.40e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.55  E-value: 1.40e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   445 PAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPAKITPKPTAKKVASSSSDSSDDEKKPAAKPTPANATPKPVAKKA 524
Cdd:PHA03247 2551 PPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPS 2630

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   525 ESSSDSSDDEKKPVAKPTSAKATPKPAAKKADLSSDFSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPAk 604
Cdd:PHA03247 2631 PSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPE- 2709

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   605 ttPKPTAKKAASSSSDSSDDEKKPVAKPTSAKATPKPAAKKADSSSDSSDDEAPAKKTPVKPTPVKIVAKKvdsssdssd 684
Cdd:PHA03247 2710 --PAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAG--------- 2778

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   685 dekkPTKATPVKVTPKSVTKKAAASSSDSSDDEKKPVVKQTPNVVPKKEKAASSSDDssddekkPTAKPTPKATPKQSAK 764
Cdd:PHA03247 2779 ----PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP-------TSAQPTAPPPPPGPPP 2847

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   765 KADSSDDSSDDEAP-AKKTPAKSTPAKTAVkkeassssddssddektkkkSATTPAKSTPKTALKKAESSDSSDDDEDLP 843
Cdd:PHA03247 2848 PSLPLGGSVAPGGDvRRRPPSRSPAAKPAA--------------------PARPPVRRLARPAVSRSTESFALPPDQPER 2907

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|...
gi 71980922   844 KPSKAVTPRPQRADSEESAETEESSSRTPALKAKPLATSTEKA 886
Cdd:PHA03247 2908 PPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPA 2950
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 320-553 5.90e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 40.52  E-value: 5.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  320 KKPAAKPTPAKATPKPVAKKAESSSDSSDDEKKPVAKPAPAKATPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPKPVA 399
Cdd:NF033839 290 KKPSAPKPGMQPSPQPEKKEVKPEPETPKPEVKPQLEKPKPEVKPQPEKPKPEVKPQLETPKPEVKPQPEKPKPEVKPQP 369

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  400 KKAESSSDSSDDEKKPVAKPTSAKATP--KPAAKKADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDEKPAAK 477
Cdd:NF033839 370 EKPKPEVKPQPETPKPEVKPQPEKPKPevKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKP 449

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 71980922  478 STPAKITPKPTAKKVASSSSDSSDDEKKPAAKPTPANATPKPVAKKAESSSDSSDDEKKPVAKPTSAKATPKPAAK 553
Cdd:NF033839 450 KPEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPKPDNSKPQADDKKPSTPNNLSKDKQPSNQASTNEKATNKPKKS 525
 
Name Accession Description Interval E-value
SRP40_C pfam05022
SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae ...
 897-966 3.36e-09

SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae SRP40 protein and its homologs. SRP40/nopp40 is a chaperone involved in nucleocytoplasmic transport. SRP40 is also a suppressor of mutant AC40 subunit of RNA polymerase I and III.


Pssm-ID: 461525  Cd Length: 75  Bit Score: 54.08  E-value: 3.36e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 71980922   897 PFRRVQMTKDSV--SEKFRNNQHDSHF--DQWGQRANESLGKVVGKAFRHEKTKKKKGSYGGGPIN-QSINSIKF 966
Cdd:pfam05022   1 PFQRVDPEDVVVfaDPRLADNSYEAKGaeDDYGEKANEDLIVTRGKGFRKEKNKKKRGSYRGGAIDtNSVNSIKF 75
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
389-606 3.57e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 57.58  E-value: 3.57e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  389 TPAKATPKPVAKKAESSSDSsddekkPVAKPTSAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDS 468
Cdd:PRK12323 373 GPATAAAAPVAQPAPAAAAP------AAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGG 446

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  469 SDDEKPAAKSTPAKITPKPTAKKVASSSSDSSDDEKK-PAAKPTPANATPKPVAKKAESSSDSSDDEKKPVAKPTSAKAT 547
Cdd:PRK12323 447 APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAaPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESI 526

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 71980922  548 PKPAAKKADlssdfsdDEAPAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPAKTT 606
Cdd:PRK12323 527 PDPATADPD-------DAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFD 578
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
264-548 6.85e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 53.31  E-value: 6.85e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  264 AKPAPAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPvakkaesssdssddekkPAAKPTPAKATPKPVAKKAESS 343
Cdd:PRK07003 372 VPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAP-----------------KAAAAAAATRAEAPPAAPAPPA 434

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  344 SDSSDDEKKPVAKPAPAKAtPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPKPVAKKAESssdssddekkPVAKPTSAK 423
Cdd:PRK07003 435 TADRGDDAADGDAPVPAKA-NARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAP----------RAAAPSAAT 503

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  424 ATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPAKITPKPTAKKVASSSSDSSDDE 503
Cdd:PRK07003 504 PAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAA 583

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 71980922  504 KKPAAKPTPANATPKPVAKKAESSSDSSDDEKKPVAKPTSAKATP 548
Cdd:PRK07003 584 APKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPP 628
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
323-567 1.24e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 52.54  E-value: 1.24e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  323 AAKPTPAKATPKPVAKKAESSSDSSDDEKKPVAKPAPAKATPKPVAKKAESSSDSSDDEKKPAA---KPTPAKATPKPVA 399
Cdd:PRK07003 371 GVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPAtadRGDDAADGDAPVP 450

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  400 KKAESSSDSSDDEKKPVAKPTSAKAtPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKST 479
Cdd:PRK07003 451 AKANARASADSRCDERDAQPPADSG-SASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPA 529

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  480 PAKITPKPTAKKVASSSSDSSDD--------EKKPAAKPTPANATPKPVAKKAESSSDSSDDEKKPVAKPTSAKATPKPA 551
Cdd:PRK07003 530 PEARPPTPAAAAPAARAGGAAAAldvlrnagMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAP 609

                        250
                 ....*....|....*.
gi 71980922  552 AKKADLSSDFSDDEAP 567
Cdd:PRK07003 610 PNGAARAEQAAESRGA 625
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
245-457 1.71e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 51.80  E-value: 1.71e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  245 VVKKAESSSDSSDDEKKPVAKPAPAKATPKPAAKKAdsssdssddEAPAKKTPAKAApKPVAKKAESSSDSSDDEKKPAA 324
Cdd:PRK12323 385 PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVA---------AAPARRSPAPEA-LAAARQASARGPGGAPAPAPAP 454

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  325 KPTPAKATPKPVAKKAESSSDSSDDE--KKPVAKPAPAKATPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPKPVAKKA 402
Cdd:PRK12323 455 AAAPAAAARPAAAGPRPVAAAAAAAParAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADP 534

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 71980922  403 ESSSDSSDDEKKPVAKPTSAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKP 457
Cdd:PRK12323 535 DDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLP 589
PHA03247 PHA03247
large tegument protein UL36; Provisional
 250-610 7.48e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.32  E-value: 7.48e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   250 ESSSDSSDDEKKPVAKPAPAKATPKpaaKKADSSSDSSDDEAPAKKTPAKAAPKPVAKKAeSSSDSSDDEKKPAAKPTPA 329
Cdd:PHA03247 2640 PHPPPTVPPPERPRDDPAPGRVSRP---RRARRLGRAAQASSPPQRPRRRAARPTVGSLT-SLADPPPPPPTPEPAPHAL 2715

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   330 -KATPKPVAKKAESSSDSSddekkPVAKPAPAKATPKPVAKKAESSSDSSDDEKKPAAkPTPAK---ATPKPVAKKAESS 405
Cdd:PHA03247 2716 vSATPLPPGPAAARQASPA-----LPAAPAPPAVPAGPATPGGPARPARPPTTAGPPA-PAPPAapaAGPPRRLTRPAVA 2789

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   406 SDSSDDEKKPVAKPTSAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPAKITP 485
Cdd:PHA03247 2790 SLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSR 2869

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   486 KPTAKKVASSSSDSSDDEKKPAAKPTPANATPKPVAKKAESSSDSSDDEKKPVAKPTSAKATPKPAAKKADLSSDFSDDE 565
Cdd:PHA03247 2870 SPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDP 2949

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 71980922   566 APA-KKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPAKTTPKPT 610
Cdd:PHA03247 2950 AGAgEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPP 2995
PHA03247 PHA03247
large tegument protein UL36; Provisional
 291-668 8.63e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.94  E-value: 8.63e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   291 APAKKTPAKAAPKPVAKKAESSSDSSDDEKKPAAKPTPAkaTPKPVAKKAESSSDSSDDEKKPVAKPAPAKATPKPVAKK 370
Cdd:PHA03247 2558 AAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSA--RPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAA 2635

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   371 AESSSdssddekkPAAKPTPAKATPKPVAKKAESSSDSSDDEKKPVAKPTSAKATPKPAAKKADSSSDSSDDEAPAKKTP 450
Cdd:PHA03247 2636 NEPDP--------HPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPT 2707

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   451 AKAAPKPASKKAESSSDSSDDEKPAAKSTPAKITPKPTAKKVASSSSDSSDDEKKPAA--KPTPAN---ATPKPVAKKAE 525
Cdd:PHA03247 2708 PEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGppAPAPPAapaAGPPRRLTRPA 2787

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   526 SSSDSSDDEKKPVAKPTSAKATPKPAAKKADLSSDFSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPAKT 605
Cdd:PHA03247 2788 VASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPP 2867

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 71980922   606 TPKPTAKKAASSSSDSSDDEKKPVAKPTSAKATPK------PAAKKADSSSDSSDDEAPAKKTPVKPTP 668
Cdd:PHA03247 2868 SRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPdqperpPQPQAPPPPQPQPQPPPPPQPQPPPPPP 2936
PHA03247 PHA03247
large tegument protein UL36; Provisional
 445-886 1.40e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.55  E-value: 1.40e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   445 PAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPAKITPKPTAKKVASSSSDSSDDEKKPAAKPTPANATPKPVAKKA 524
Cdd:PHA03247 2551 PPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPS 2630

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   525 ESSSDSSDDEKKPVAKPTSAKATPKPAAKKADLSSDFSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPAk 604
Cdd:PHA03247 2631 PSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPE- 2709

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   605 ttPKPTAKKAASSSSDSSDDEKKPVAKPTSAKATPKPAAKKADSSSDSSDDEAPAKKTPVKPTPVKIVAKKvdsssdssd 684
Cdd:PHA03247 2710 --PAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAG--------- 2778

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   685 dekkPTKATPVKVTPKSVTKKAAASSSDSSDDEKKPVVKQTPNVVPKKEKAASSSDDssddekkPTAKPTPKATPKQSAK 764
Cdd:PHA03247 2779 ----PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP-------TSAQPTAPPPPPGPPP 2847

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   765 KADSSDDSSDDEAP-AKKTPAKSTPAKTAVkkeassssddssddektkkkSATTPAKSTPKTALKKAESSDSSDDDEDLP 843
Cdd:PHA03247 2848 PSLPLGGSVAPGGDvRRRPPSRSPAAKPAA--------------------PARPPVRRLARPAVSRSTESFALPPDQPER 2907

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|...
gi 71980922   844 KPSKAVTPRPQRADSEESAETEESSSRTPALKAKPLATSTEKA 886
Cdd:PHA03247 2908 PPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPA 2950
valS PRK14900
valyl-tRNA synthetase; Provisional
 259-402 1.51e-05

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 49.22  E-value: 1.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   259 EKKPVAKPAPAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPVAKKAESSsdssddekkpaakptpAKATPKPVAK 338
Cdd:PRK14900  917 EIQNEQKPTQDGPAAEAQPAQENTVVESAEKAVAAVSEAAQQAATAVASGIEKV----------------AEAVRKTVRR 980

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 71980922   339 KAESSSDSSDDEKKPVAKPAPAKATP--KPVAKKA--ESSSDSSDDEKKPAAKPTPAKATPKPVAKKA 402
Cdd:PRK14900  981 SVKKAAATRAAMKKKVAKKAPAKKAAakKAAAKKAaaKKKVAKKAPAKKVARKPAAKKAAKKPARKAA 1048
PTZ00108 PTZ00108
DNA topoisomerase 2-like protein; Provisional
 350-565 2.31e-05

DNA topoisomerase 2-like protein; Provisional


Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 48.50  E-value: 2.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   350 EKKPVAKPAPAKATPKPVAKKAESSsdssddeKKPAAKPTPAKATPKPVAKKAESSSDSSDDEKKPVAKPTSAKATPKPA 429
Cdd:PTZ00108 1156 QRLKSKTKGKASKLRKPKLKKKEKK-------KKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDD 1228

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   430 AKKADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPAKITPKPTAKKVASSSSDSSDDEKKPAAK 509
Cdd:PTZ00108 1229 EEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKK 1308

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   510 PTPANATPKPVA----KKAESSSDSSDDEKKPVAKPTSAKATPKPAAKKADLSSDFSDDE 565
Cdd:PTZ00108 1309 KVKKRLEGSLAAlkkkKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDD 1368
PTZ00121 PTZ00121
MAEBL; Provisional
 246-549 3.43e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 48.21  E-value: 3.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   246 VKKAESSSDSSDDEKKP-VAKPAPAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPVAKKAESSSDSSDDEKKPAA 324
Cdd:PTZ00121 1301 KKKADEAKKKAEEAKKAdEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKA 1380

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   325 KPTPAKATPKPVAKKAESSSDSSDDEKKPVAKPAPAKATPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPKPVAKKAES 404
Cdd:PTZ00121 1381 DAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAE 1460

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   405 SSDSSDDEKKPV--AKPTSAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPA- 481
Cdd:PTZ00121 1461 EAKKKAEEAKKAdeAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAk 1540

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 71980922   482 KITPKPTAKKVASSSSDSSDDEKKPAAKPTPANATPKPVAKKAESSSDSSDDEKKPVAKPTSAKATPK 549
Cdd:PTZ00121 1541 KAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK 1608
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
296-525 7.69e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 46.79  E-value: 7.69e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  296 TPAKAAPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPKPVAkkaesssdssddeKKPVAKPAPAKATPKPVAKKAESSS 375
Cdd:PRK12323 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAA-------------AARAVAAAPARRSPAPEALAAARQA 439

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  376 DSSDDEKKPAAKPTPAkatPKPVAKKAESSSDSSDDEKKPVAKPTSAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAP 455
Cdd:PRK12323 440 SARGPGGAPAPAPAPA---AAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDA 516

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  456 KPASKKAESSSDSSDDEKPAAKSTPAkitPKPTAkkvASSSSDSSDDEKKPAAKPTPANATPKPVAKKAE 525
Cdd:PRK12323 517 APAGWVAESIPDPATADPDDAFETLA---PAPAA---APAPRAAAATEPVVAPRPPRASASGLPDMFDGD 580
valS PRK14900
valyl-tRNA synthetase; Provisional
 290-433 8.18e-05

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 46.52  E-value: 8.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   290 EAPAKKTPAKAAPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPKPVAKKAESSSDSSDDEKKPVAKPAPAK--ATPKPV 367
Cdd:PRK14900  917 EIQNEQKPTQDGPAAEAQPAQENTVVESAEKAVAAVSEAAQQAATAVASGIEKVAEAVRKTVRRSVKKAAATraAMKKKV 996

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 71980922   368 AKKAesssdssdDEKKPAAKPTPAK--ATPKPVAKKAesssDSSDDEKKPVAKPTSAKATPKPAAKKA 433
Cdd:PRK14900  997 AKKA--------PAKKAAAKKAAAKkaAAKKKVAKKA----PAKKVARKPAAKKAAKKPARKAAGRKA 1052
PLN03237 PLN03237
DNA topoisomerase 2; Provisional
 264-565 9.71e-05

DNA topoisomerase 2; Provisional


Pssm-ID: 215641 [Multi-domain]  Cd Length: 1465  Bit Score: 46.39  E-value: 9.71e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   264 AKPAPAKATPKPAAKKADSSSDSSDDeapaKKTPAKAAPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPKPVAKKAESS 343
Cdd:PLN03237 1173 AKAEEAREKLQRAAARGESGAAKKVS----RQAPKKPAPKKTTKKASESETTEETYGSSAMETENVAEVVKPKGRAGAKK 1248

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   344 SDSSDDEKKPVA-KPAPAKATPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPKPVAKKAESSSDSSDDEKKPVaKPTSA 422
Cdd:PLN03237 1249 KAPAAAKEKEEEdEILDLKDRLAAYNLDSAPAQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFAV-EVSLA 1327

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   423 KATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPAKITPKPTAKKVASSSSDSSDD 502
Cdd:PLN03237 1328 ERLKKKGGRKPAAANKKAAKPPAAAKKRGPATVQSGQKLLTEMLKPAEAIGISPEKKVRKMRASPFNKKSGSVLGRAATN 1407

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 71980922   503 EKKPAAKPTPANATPKPVAKKAESSSDSSDDEKKPVAKPTSAKATPKPAakkadlSSDFSDDE 565
Cdd:PLN03237 1408 KETESSENVSGSSSSEKDEIDVSAKPRPQRANRKQTTYVLSDSESESAD------DSDFDDDE 1464
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
 264-454 1.35e-04

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 45.71  E-value: 1.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  264 AKPAPAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPK--------- 334
Cdd:PRK05035 476 AAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKkaavaaaia 555

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  335 -PVAKKAESSSDSSDDE-----KKPVAKPAPAKATPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPKPVAKKAESSSDS 408
Cdd:PRK05035 556 rAKAKKAAQQAANAEAEeevdpKKAAVAAAIARAKAKKAAQQAASAEPEEQVAEVDPKKAAVAAAIARAKAKKAEQQANA 635

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 71980922  409 SDDEKKPVAKPTSAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAA 454
Cdd:PRK05035 636 EPEEPVDPRKAAVAAAIARAKARKAAQQQANAEPEEAEDPKKAAVA 681
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
417-667 1.63e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 45.61  E-value: 1.63e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  417 AKPTSAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPASKKAESssdssddekPAAKSTPAKITPKPTAKKVASSS 496
Cdd:PRK07003 372 VPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAA---------ATRAEAPPAAPAPPATADRGDDA 442

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  497 SDSSDDEKKPAAKPTPANATPKPVAKKAESSSDSSDDEKKPVAKPTSAKATPKPAAKKADLSSDFSDDEAPAKKTPAKAA 576
Cdd:PRK07003 443 ADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAP 522

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  577 PKPASKKAESSSDSSDDEKPAAKSTPAKTTPKPTAKKAASSSSDSSDDEKKPVAKPTSAKATPKPAAKKADSSSDSSDDE 656
Cdd:PRK07003 523 AAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRAR 602

                        250
                 ....*....|.
gi 71980922  657 APAKKTPVKPT 667
Cdd:PRK07003 603 AATGDAPPNGA 613
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 264-369 2.01e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 45.27  E-value: 2.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   264 AKPAPAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPVAKKAEsssdssddekKPAAKPTPAKATPKPVAKKAESS 343
Cdd:PRK12270   34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAP----------AAPPKPAAAAAAAAAPAAPPAAA 103

                          90       100
                  ....*....|....*....|....*.
gi 71980922   344 SDSSDDEKKPVAKPAPAKATPKPVAK 369
Cdd:PRK12270  104 AAAAPAAAAVEDEVTPLRGAAAAVAK 129
valS PRK14900
valyl-tRNA synthetase; Provisional
 412-555 2.44e-04

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 44.98  E-value: 2.44e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   412 EKKPVAKPTSAKATPKPAAKKADSSSDSSDDE-APAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPAKitPKPTAK 490
Cdd:PRK14900  917 EIQNEQKPTQDGPAAEAQPAQENTVVESAEKAvAAVSEAAQQAATAVASGIEKVAEAVRKTVRRSVKKAAAT--RAAMKK 994

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 71980922   491 KVASSSSDSSDDEKKPAAKPTpanATPKPVAKKAesssDSSDDEKKPVAKPTSAKATPKPAAKKA 555
Cdd:PRK14900  995 KVAKKAPAKKAAAKKAAAKKA---AAKKKVAKKA----PAKKVARKPAAKKAAKKPARKAAGRKA 1052
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 292-400 4.50e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.11  E-value: 4.50e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   292 PAKKTPAKAAPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPKPVAkkaesssdssddekkpvAKPAPAKATPKPVAKKA 371
Cdd:PRK12270   38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAP-----------------PKPAAAAAAAAAPAAPP 100

                          90       100
                  ....*....|....*....|....*....
gi 71980922   372 ESSSDSSDDEKKPAAKPTPAKATPKPVAK 400
Cdd:PRK12270  101 AAAAAAAPAAAAVEDEVTPLRGAAAAVAK 129
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 262-609 4.68e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.21  E-value: 4.68e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  262 PVAKPAPAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPKPVAKKAE 341
Cdd:PRK07764 406 PAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPP 485

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  342 SSSDSSDDEKKPVAKPAPAKATPKP--------VAKKAESSSDSSDDEKKPAAKPTPAKAT------PKPVAKKAESSSD 407
Cdd:PRK07764 486 AAPAPAAAPAAPAAPAAPAGADDAAtlrerwpeILAAVPKRSRKTWAILLPEATVLGVRGDtlvlgfSTGGLARRFASPG 565

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  408 SSDDEKKPVAK---------------PTSAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDE 472
Cdd:PRK07764 566 NAEVLVTALAEelggdwqveavvgpaPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAP 645

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  473 KPAAKSTPAKITPKPTAKKVASSSSDSSDDEKKPAAKPTPANATPKPVAKKAESSSDSSDDEKKPVAKPTSAKATPKPAA 552
Cdd:PRK07764 646 GVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAA 725

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 71980922  553 KKADLSSDFSDDEAPAKKTP-AKAAPKPASKKAESSSDSSDDEKPAAKSTPAKTTPKP 609
Cdd:PRK07764 726 QGASAPSPAADDPVPLPPEPdDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEE 783
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
247-481 6.58e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 43.68  E-value: 6.58e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  247 KKAESSSDSSDDEKKPVAKPAPAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPVAKKAESSSDSSDDEKKPAAKP 326
Cdd:PRK07003 399 VTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSAS 478

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  327 TPAKATPKPVAKKAESSSDssddekkpvakpAPAKATPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPKPVAKKAESSS 406
Cdd:PRK07003 479 APASDAPPDAAFEPAPRAA------------APSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARA 546

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 71980922  407 DSSDDekkpvAKPTSAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPA 481
Cdd:PRK07003 547 GGAAA-----ALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARA 616
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 323-457 1.08e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.78  E-value: 1.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  323 AAKPTPAKATPKPVAKKAESSSDSSDDEKKPVAKPAPAKAtPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPKPVAKKA 402
Cdd:PRK14951 363 AFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPA-PAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAA 441

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 71980922  403 ESSSdssddekkPVAKPTSAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKP 457
Cdd:PRK14951 442 PAAV--------ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARL 488
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 262-403 1.11e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 42.93  E-value: 1.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  262 PVAKPAPAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPVAKKAESSSDSSDDEKKPA-AKPTPAKATPKPVAKKA 340
Cdd:PRK07994 381 AQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEpAAASRARPVNSALERLA 460

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 71980922  341 ESSSDSSDDEKKPVAKPAPAKATPKPVAKKAESSSDSSDDekKPAAKPTPakaTPKPVAKKAE 403
Cdd:PRK07994 461 SVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKAL--KKALEHEK---TPELAAKLAA 518
rne PRK10811
ribonuclease E; Reviewed
 269-429 1.18e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 42.72  E-value: 1.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   269 AKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPKPVAKKAESSSDSSD 348
Cdd:PRK10811  864 VQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVA 943

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   349 DEKKPVAKPAPAKATPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPKPVAKKAESSSDSSDDEKKPVAKP-TSAKATPK 427
Cdd:PRK10811  944 EHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNhATAPMTRA 1023


                  ..
gi 71980922   428 PA 429
Cdd:PRK10811 1024 PA 1025
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
 276-483 1.65e-03

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 42.24  E-value: 1.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  276 AAKKADSSSDSSDDEAPAKKTPAKAAPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPKPVAKKAESSSDSSDDEKKPVA 355
Cdd:PRK05035 467 AAREARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPK 546

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  356 KPAPAKATPKPVAKKAESSSDSSDDE-----KKPAAKPTPAKATPKPVAKKAESSSDSSDDEKKPVAKPTSAKATPKPAA 430
Cdd:PRK05035 547 KAAVAAAIARAKAKKAAQQAANAEAEeevdpKKAAVAAAIARAKAKKAAQQAASAEPEEQVAEVDPKKAAVAAAIARAKA 626

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 71980922  431 KKADSSSDSSDDEAP-AKKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPAKI 483
Cdd:PRK05035 627 KKAEQQANAEPEEPVdPRKAAVAAAIARAKARKAAQQQANAEPEEAEDPKKAAV 680
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 268-431 1.87e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 42.16  E-value: 1.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  268 PAKATPKPAAKKADSssdssddeAPAKKTPAKAAPKPVAKKAESSSDSSDDEKKPAAKPTPAKATP-KPVAKKAESSSDS 346
Cdd:PRK07994 361 PAAPLPEPEVPPQSA--------APAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETtSQLLAARQQLQRA 432

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  347 SDDEKKPVAKPAPA---KATPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPKPVAKKAEsssdssddekkPVAKPTSAK 423
Cdd:PRK07994 433 QGATKAKKSEPAAAsraRPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKE-----------PVATPKALK 501

                        170
                 ....*....|....
gi 71980922  424 A------TPKPAAK 431
Cdd:PRK07994 502 KalehekTPELAAK 515
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
381-609 1.87e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.14  E-value: 1.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  381 EKKPAAKPTPAKATP--------KPVAKKAESSSDSSDDEKKPVAKPTSAKATPKPAAKKADSSSDSSDDeAPAKKTPAK 452
Cdd:PRK07003 359 EPAVTGGGAPGGGVParvagavpAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPA-APAPPATAD 437

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  453 AAPKPASKKAESSSDSSDDEKPAAKSTPAKITPKPTAKKVASSSSDSSDDEKKPAAKPT--PANATPKPVAKKAESSSDS 530
Cdd:PRK07003 438 RGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAaaPSAATPAAVPDARAPAAAS 517

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  531 SDDEKKPVAKPTSAKATPKPAAKKA-------------------DLSSDFSDDEAPAKKTPAK--AAPKPASKKAESSSD 589
Cdd:PRK07003 518 REDAPAAAAPPAPEARPPTPAAAAPaaraggaaaaldvlrnagmRVSSDRGARAAAAAKPAAApaAAPKPAAPRVAVQVP 597

                        250       260
                 ....*....|....*....|
gi 71980922  590 SSDDEKPAAKSTPAKTTPKP 609
Cdd:PRK07003 598 TPRARAATGDAPPNGAARAE 617
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 355-487 2.08e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.01  E-value: 2.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  355 AKPAPAKATPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPKPVAkkaesssDSSDDEKKPVAKPTSAKATPKPAAKKAD 434
Cdd:PRK14951 372 AAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAA-------PPAAAPPAPVAAPAAAAPAAAPAAAPAA 444

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 71980922  435 SSSDSSDDEAPAKKT---PAKAAPKPAskkaesssDSSDDEKPAAKSTPAKITPKP 487
Cdd:PRK14951 445 VALAPAPPAQAAPETvaiPVRVAPEPA--------VASAAPAPAAAPAAARLTPTE 492
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 261-338 2.19e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 42.18  E-value: 2.19e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 71980922   261 KPVAKPAPAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPKPVAK 338
Cdd:PRK12270   52 AAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAAAVAK 129
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 390-563 2.44e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 41.77  E-value: 2.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  390 PAKATPKPVAKKAESSSDSSddekkPVAKPTSAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSS 469
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAAS-----AQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGA 435

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  470 DDEKPAAKSTPAKITPKPTA-KKVASSSSDSSDDEKKPAAKPTPANATPKPVAKKAEsssdssddekkPVAKPTSAKA-- 546
Cdd:PRK07994 436 TKAKKSEPAAASRARPVNSAlERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKE-----------PVATPKALKKal 504

                        170       180
                 ....*....|....*....|.
gi 71980922  547 ----TPKPAAKKADLSSDFSD 563
Cdd:PRK07994 505 ehekTPELAAKLAAEAIERDP 525
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
474-673 2.58e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.79  E-value: 2.58e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  474 PAAKSTPAKITPKPTAKKVASSSSDSSDDEKKPAAKPTPANATPKPVAKKAESSSDSSDDEKKPVAKPTSAKATPKPAAK 553
Cdd:PRK12323 374 PATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPA 453

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  554 KAdlssdfsddEAPAKKTPAKAAPkpASKKAESSSDSSDDEKPAAKSTPAKTTPKPTaKKAASSSSDSSDDEKKPVAKPT 633
Cdd:PRK12323 454 PA---------AAPAAAARPAAAG--PRPVAAAAAAAPARAAPAAAPAPADDDPPPW-EELPPEFASPAPAQPDAAPAGW 521

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 71980922  634 SAKATPKPAAKKADSSSDSSDDEAPAKKTPVKPTPVKIVA 673
Cdd:PRK12323 522 VAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVV 561
valS PRK14900
valyl-tRNA synthetase; Provisional
 196-321 2.81e-03

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 41.52  E-value: 2.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   196 KANPVKVTPVANVLQKVVAKKAASSSSDSSDDEKKPAAKPTPAKPTPKPVVKKAessSDSSDDEKKPVAKPAPAKATP-- 273
Cdd:PRK14900  932 EAQPAQENTVVESAEKAVAAVSEAAQQAATAVASGIEKVAEAVRKTVRRSVKKA---AATRAAMKKKVAKKAPAKKAAak 1008

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 71980922   274 KPAAKKADSSSdssddeAPAKKTPAK-AAPKPVAKKAESSSDSSDDEKK 321
Cdd:PRK14900 1009 KAAAKKAAAKK------KVAKKAPAKkVARKPAAKKAAKKPARKAAGRK 1051
PHA03247 PHA03247
large tegument protein UL36; Provisional
 70-450 2.92e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.85  E-value: 2.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922    70 PPVKKMAAKDSSDSDSSDDGAVKKNGVQKPVNVAAKKSATPVQKKAESSSSSDSDAPAKKLTPvkkPAQTPAQKKAASSS 149
Cdd:PHA03247 2623 APDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRR---RAARPTVGSLTSLA 2699

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   150 DSDSDDEPPKKAPAVTTKVAPKPMAKKQDTSDSDSDSEDSDdgkskkANPVKVTPVANVLQKVVAKKAASSSSDSSDDEK 229
Cdd:PHA03247 2700 DPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPA------PPAVPAGPATPGGPARPARPPTTAGPPAPAPPA 2773

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   230 KPAAKPTPAKPTPKPVVKKAESSSDSSDDEKKPVAKPAPAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPVAKKA 309
Cdd:PHA03247 2774 APAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLG 2853

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   310 ESSSDSSDDEKKPAAKPTPAKATPKPVAKKAESSSDSSDDEKKPVAKPAPAKATPKPVAKKAESSSDSSDDEKKPAAKPT 389
Cdd:PHA03247 2854 GSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPP 2933

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 71980922   390 PAKATPKPVAKKAESSSDSSDDEKKPVAKPTSAKATPKPAAKKADSSSDSSDDEAPAKKTP 450
Cdd:PHA03247 2934 PPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTP 2994
valS PRK14900
valyl-tRNA synthetase; Provisional
 358-493 4.09e-03

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 41.13  E-value: 4.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   358 APAKATPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPKPVAKKAESSSDSSDDEKKPVAKptSAKATPKPAAKKADSss 437
Cdd:PRK14900  923 KPTQDGPAAEAQPAQENTVVESAEKAVAAVSEAAQQAATAVASGIEKVAEAVRKTVRRSVK--KAAATRAAMKKKVAK-- 998

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 71980922   438 dssddEAPAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPAKITPKPTAKKVA 493
Cdd:PRK14900  999 -----KAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKAAG 1049
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 560-672 4.66e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 41.03  E-value: 4.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   560 DFSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPAKTTPKPTakkaassssdssddeKKPVAKPTSAKATP 639
Cdd:PRK12270   31 EFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPA---------------APPKPAAAAAAAAA 95

                          90       100       110
                  ....*....|....*....|....*....|...
gi 71980922   640 KPAAKKADSSSDSSDDEAPAKKTPVKPTPVKIV 672
Cdd:PRK12270   96 PAAPPAAAAAAAPAAAAVEDEVTPLRGAAAAVA 128
PHA03247 PHA03247
large tegument protein UL36; Provisional
 385-882 5.05e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 5.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   385 AAKPTPAKATPKPVAKKAESSSDSSDDEKKPVAKPTSAKatpkPAAKKADSSSDSSDDeAPAKKTPAKAAPKPASKKAES 464
Cdd:PHA03247 2559 APPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSAR----PRAPVDDRGDPRGPA-PPSPLPPDTHAPDPPPPSPSP 2633

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   465 SSDSSDDEKPAAKSTPAKITPKPTAKKVASSSSDSSDDEKKPAAKPT------PANATPKPVAKKAESSSDSSDDEKKPV 538
Cdd:PHA03247 2634 AANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPqrprrrAARPTVGSLTSLADPPPPPPTPEPAPH 2713

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   539 AKPTSAKATPKPAAKKAdlssdfsddeaPAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPAKTTPkptakkAASSS 618
Cdd:PHA03247 2714 ALVSATPLPPGPAAARQ-----------ASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAP------PAAPA 2776

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   619 SDSSDDEKKPVAKPTSAKATPKPAAKKADSSSDSSDDEAPAKKTPVKPTPVkivakkVDSSSDSSDDEKKPTKATPVKVT 698
Cdd:PHA03247 2777 AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGP------LPPPTSAQPTAPPPPPGPPPPSL 2850

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   699 PKSVTKKAAASSSDSSDDEKKPVVKQTPNVVPKKEKAASSSDDSSDDEKKPTAKPTPKATPK-QSAKKADSSDDSSDDEA 777
Cdd:PHA03247 2851 PLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQaPPPPQPQPQPPPPPQPQ 2930

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   778 PAKKTPAKSTPaktavkkeassssddssddektkkksattPAKSTPKTALKKAESSDSSDDDEDLPKPSKAVTPRPQRAD 857
Cdd:PHA03247 2931 PPPPPPPRPQP-----------------------------PLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQ 2981

                         490       500
                  ....*....|....*....|....*
gi 71980922   858 SEESAETEESSSRTPALKAKPLATS 882
Cdd:PHA03247 2982 PAPSREAPASSTPPLTGHSLSRVSS 3006
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
417-628 5.46e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.63  E-value: 5.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  417 AKPTSAKATPKPAAKKADSSsdssddEAPAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPAKITPkptAKKVASSS 496
Cdd:PRK12323 372 AGPATAAAAPVAQPAPAAAA------PAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALA---AARQASAR 442

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  497 SDSSDDEKKPAAKPTPANATPKPVAKKAEsssdssddekkPVAKPTSAKATPKPAAKKADLSSDFS--DDEAPAKKTPAK 574
Cdd:PRK12323 443 GPGGAPAPAPAPAAAPAAAARPAAAGPRP-----------VAAAAAAAPARAAPAAAPAPADDDPPpwEELPPEFASPAP 511

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 71980922  575 AAPKPASKKAESSSDSSDDEKPAAKSTPAKTTPKPTAKKAASSSSDSSDDEKKP 628
Cdd:PRK12323 512 AQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRP 565
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 320-553 5.90e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 40.52  E-value: 5.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  320 KKPAAKPTPAKATPKPVAKKAESSSDSSDDEKKPVAKPAPAKATPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPKPVA 399
Cdd:NF033839 290 KKPSAPKPGMQPSPQPEKKEVKPEPETPKPEVKPQLEKPKPEVKPQPEKPKPEVKPQLETPKPEVKPQPEKPKPEVKPQP 369

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  400 KKAESSSDSSDDEKKPVAKPTSAKATP--KPAAKKADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDEKPAAK 477
Cdd:NF033839 370 EKPKPEVKPQPETPKPEVKPQPEKPKPevKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKP 449

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 71980922  478 STPAKITPKPTAKKVASSSSDSSDDEKKPAAKPTPANATPKPVAKKAESSSDSSDDEKKPVAKPTSAKATPKPAAK 553
Cdd:NF033839 450 KPEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPKPDNSKPQADDKKPSTPNNLSKDKQPSNQASTNEKATNKPKKS 525
valS PRK14900
valyl-tRNA synthetase; Provisional
 298-458 5.98e-03

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 40.75  E-value: 5.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   298 AKAAPKPVAK-KAESSSDSSDDEKKPAAKPTPAKATPKPVAKKA-ESSSDSSDDEKKPVAKPAPAKATPkpVAKKAESSS 375
Cdd:PRK14900  872 QNAPPAVVEKdRARAEELREKRGKLEAHRAMLSGSEANSARRDTmEIQNEQKPTQDGPAAEAQPAQENT--VVESAEKAV 949

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   376 DSSDDEKKPAAKPTP------AKATPKPVAKKAESSSDSSDDEKKPVAKPTSAKATP--KPAAKKAdSSSDSSDDEAPAK 447
Cdd:PRK14900  950 AAVSEAAQQAATAVAsgiekvAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAakKAAAKKA-AAKKKVAKKAPAK 1028

                         170
                  ....*....|.
gi 71980922   448 KTPAKAAPKPA 458
Cdd:PRK14900 1029 KVARKPAAKKA 1039
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 417-509 6.27e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 40.64  E-value: 6.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   417 AKPTSAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPAKITPKPTAKKVASSS 496
Cdd:PRK12270   34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113

                          90
                  ....*....|...
gi 71980922   497 SDSSDDEKKPAAK 509
Cdd:PRK12270  114 EDEVTPLRGAAAA 126
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 352-456 7.25e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 40.26  E-value: 7.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   352 KPVAKPAPAKATPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPKPVAKKAesssdssddekkpvakPTSAKATPKPAAK 431
Cdd:PRK12270   37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPA----------------AAAAAAAAPAAPP 100

                          90       100
                  ....*....|....*....|....*
gi 71980922   432 KADSSSDSSDDEAPAKKTPAKAAPK 456
Cdd:PRK12270  101 AAAAAAAPAAAAVEDEVTPLRGAAA 125
PHA03247 PHA03247
large tegument protein UL36; Provisional
 109-487 7.69e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.31  E-value: 7.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   109 TPVQKKAESSSSSDSDAPAKKLTPVKKPAQTPAqKKAASSSDSDSDDEPPKKAPAVTTKVAPKPMAKKQDTSDSDSDSED 188
Cdd:PHA03247 2600 APVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPS-PAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASS 2678

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   189 SDDGKSKKANPVKVTPVANVL----QKVVAKKAASSSSDSSDDEKKPAAKPTPAKPTPKPVVKKAESSSDSSDDEKKPVA 264
Cdd:PHA03247 2679 PPQRPRRRAARPTVGSLTSLAdpppPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPA 2758

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   265 KPAPAKATPKPAAKKADSSSDSSDDEAPAKKT--------PAKAAPKPVAKKAESSSDSSDDEKKPAA-KPTPAKATPKP 335
Cdd:PHA03247 2759 RPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASlsesreslPSPWDPADPPAAVLAPAAALPPAASPAGpLPPPTSAQPTA 2838

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   336 VAKKAESSSDSSDDE----------KKPVAKPAPAK--ATPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPKPVAKKAE 403
Cdd:PHA03247 2839 PPPPPGPPPPSLPLGgsvapggdvrRRPPSRSPAAKpaAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQ 2918

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922   404 SSSDSSDDEKKPVAKPTSAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPAKI 483
Cdd:PHA03247 2919 PQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTG 2998


                  ....
gi 71980922   484 TPKP 487
Cdd:PHA03247 2999 HSLS 3002
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 400-520 8.64e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.08  E-value: 8.64e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71980922  400 KKAESSSDSSDDEKKPVAKPTSAKATPKPAAKKADSSSDSsddEAPAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKST 479
Cdd:PRK14951 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPA---AAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAA 441

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 71980922  480 PAKITPKPTAKKVASSSSDSSDDEKKPAAKPTPANATPKPV 520
Cdd:PRK14951 442 PAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAA 482
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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