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Conserved domains on  [gi|157822615|ref|NP_001099495|]
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putative protein MSS51 homolog, mitochondrial [Rattus norvegicus]

Protein Classification

zinc finger MYND domain-containing protein( domain architecture ID 10484396)

MYND (myeloid-Nervy-DEAF-1) domain-containing protein, defined by a C6HC zinc-chelating motif, does not bind DNA, but instead mediates interactions with other proteins

CATH:  3.30.60.180
Gene Ontology:  GO:0045892|GO:0008270|GO:0005515
PubMed:  19925420
SCOP:  4000530

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
MSS51_C pfam20179
MSS51 C-terminal domain; This presumed domain is found at the C-terminus of the MSS51 protein.
242-422 5.91e-23

MSS51 C-terminal domain; This presumed domain is found at the C-terminus of the MSS51 protein.


:

Pssm-ID: 466330  Cd Length: 184  Bit Score: 95.57  E-value: 5.91e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822615  242 PLTLGLGI-RTLAIDVGKTGGS-TLHVVGAsHVETFLIRSgdYDELGYMFPENLgFRVIMVGVDVSADLLQSSSSL---- 315
Cdd:pfam20179   1 PLTLYYALeRLSLAGLIERRRSlVIHIIGA-EAELNLLPA--WEELLHLLPNTD-LEIVFIGPELSVELGPEKVELcppc 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822615  316 -PLEPGTVQLSGHRALYHDFweeqIETGNLAHPDLVAAFHPGFhaspGLMEAWLPTLLLLRDYEIPTLITVYSQQELEAS 394
Cdd:pfam20179  77 kAPGRTRLSIESFHGLYHDY----VPSDPYKKPDLIVAFNAGL----GSYETWAPTLKALLEQKCPLIFTSYSESEAERD 148
                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 157822615  395 LQVLVNLDTHIIACGA--------NPFASLKPEQVY 422
Cdd:pfam20179 149 VARLREVLGPSKELGArfllppekNPFRSPRPRRDP 184
zf-MYND pfam01753
MYND finger;
104-148 4.07e-14

MYND finger;


:

Pssm-ID: 460312  Cd Length: 39  Bit Score: 66.29  E-value: 4.07e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 157822615  104 CAYCKALPhglsscKVLRHCKRCRNVYYCDAECQRSDWPAHRKVC 148
Cdd:pfam01753   1 CAVCGKEA------LKLLRCSRCKSVYYCSKECQKADWPYHKKEC 39
 
Name Accession Description Interval E-value
MSS51_C pfam20179
MSS51 C-terminal domain; This presumed domain is found at the C-terminus of the MSS51 protein.
242-422 5.91e-23

MSS51 C-terminal domain; This presumed domain is found at the C-terminus of the MSS51 protein.


Pssm-ID: 466330  Cd Length: 184  Bit Score: 95.57  E-value: 5.91e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822615  242 PLTLGLGI-RTLAIDVGKTGGS-TLHVVGAsHVETFLIRSgdYDELGYMFPENLgFRVIMVGVDVSADLLQSSSSL---- 315
Cdd:pfam20179   1 PLTLYYALeRLSLAGLIERRRSlVIHIIGA-EAELNLLPA--WEELLHLLPNTD-LEIVFIGPELSVELGPEKVELcppc 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822615  316 -PLEPGTVQLSGHRALYHDFweeqIETGNLAHPDLVAAFHPGFhaspGLMEAWLPTLLLLRDYEIPTLITVYSQQELEAS 394
Cdd:pfam20179  77 kAPGRTRLSIESFHGLYHDY----VPSDPYKKPDLIVAFNAGL----GSYETWAPTLKALLEQKCPLIFTSYSESEAERD 148
                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 157822615  395 LQVLVNLDTHIIACGA--------NPFASLKPEQVY 422
Cdd:pfam20179 149 VARLREVLGPSKELGArfllppekNPFRSPRPRRDP 184
zf-MYND pfam01753
MYND finger;
104-148 4.07e-14

MYND finger;


Pssm-ID: 460312  Cd Length: 39  Bit Score: 66.29  E-value: 4.07e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 157822615  104 CAYCKALPhglsscKVLRHCKRCRNVYYCDAECQRSDWPAHRKVC 148
Cdd:pfam01753   1 CAVCGKEA------LKLLRCSRCKSVYYCSKECQKADWPYHKKEC 39
 
Name Accession Description Interval E-value
MSS51_C pfam20179
MSS51 C-terminal domain; This presumed domain is found at the C-terminus of the MSS51 protein.
242-422 5.91e-23

MSS51 C-terminal domain; This presumed domain is found at the C-terminus of the MSS51 protein.


Pssm-ID: 466330  Cd Length: 184  Bit Score: 95.57  E-value: 5.91e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822615  242 PLTLGLGI-RTLAIDVGKTGGS-TLHVVGAsHVETFLIRSgdYDELGYMFPENLgFRVIMVGVDVSADLLQSSSSL---- 315
Cdd:pfam20179   1 PLTLYYALeRLSLAGLIERRRSlVIHIIGA-EAELNLLPA--WEELLHLLPNTD-LEIVFIGPELSVELGPEKVELcppc 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822615  316 -PLEPGTVQLSGHRALYHDFweeqIETGNLAHPDLVAAFHPGFhaspGLMEAWLPTLLLLRDYEIPTLITVYSQQELEAS 394
Cdd:pfam20179  77 kAPGRTRLSIESFHGLYHDY----VPSDPYKKPDLIVAFNAGL----GSYETWAPTLKALLEQKCPLIFTSYSESEAERD 148
                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 157822615  395 LQVLVNLDTHIIACGA--------NPFASLKPEQVY 422
Cdd:pfam20179 149 VARLREVLGPSKELGArfllppekNPFRSPRPRRDP 184
zf-MYND pfam01753
MYND finger;
104-148 4.07e-14

MYND finger;


Pssm-ID: 460312  Cd Length: 39  Bit Score: 66.29  E-value: 4.07e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 157822615  104 CAYCKALPhglsscKVLRHCKRCRNVYYCDAECQRSDWPAHRKVC 148
Cdd:pfam01753   1 CAVCGKEA------LKLLRCSRCKSVYYCSKECQKADWPYHKKEC 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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