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Conserved domains on  [gi|157819909|ref|NP_001099716|]
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G patch domain-containing protein 1 [Rattus norvegicus]

Protein Classification

G patch domain-containing protein 1( domain architecture ID 10543151)

G patch domain-containing protein 1 (GPTC1)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1604 pfam07713
Protein of unknown function (DUF1604); This family is found at the N-terminus of several ...
 31-116 2.10e-47

Protein of unknown function (DUF1604); This family is found at the N-terminus of several eukaryotic RNA processing proteins.


:

Pssm-ID: 462241  Cd Length: 84  Bit Score: 163.07  E-value: 2.10e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819909   31 PIPLQDQTVRDEKGRyKRFHGAFSGGFSAGYFNTVGSKEGWTPSTFVSSRQNRADKSALGPEDFMDEEDLSEFGiAPKAI 110
Cdd:pfam07713   1 YVPVWKQEVRDEQGR-RRFHGAFTGGFSAGYFNTVGSKEGWTPSTFKSSRSNRAKKKQQRPEDFMDEEDLGEFG-APRQL 78


                  ....*.
gi 157819909  111 VTTDDF 116
Cdd:pfam07713  79 RTTDEF 84
G-patch pfam01585
G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in ...
 154-172 8.54e-05

G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in proteins that contain RNA binding domains. This suggests that this domain may have an RNA binding function. This domain has seven highly conserved glycines.


:

Pssm-ID: 396249 [Multi-domain]  Cd Length: 45  Bit Score: 40.57  E-value: 8.54e-05
                          10
                  ....*....|....*....
gi 157819909  154 SVGFELLRKMGWKEGQGVG 172
Cdd:pfam01585   3 NIGFKLLQKMGWKEGQGLG 21
 
Name Accession Description Interval E-value
DUF1604 pfam07713
Protein of unknown function (DUF1604); This family is found at the N-terminus of several ...
 31-116 2.10e-47

Protein of unknown function (DUF1604); This family is found at the N-terminus of several eukaryotic RNA processing proteins.


Pssm-ID: 462241  Cd Length: 84  Bit Score: 163.07  E-value: 2.10e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819909   31 PIPLQDQTVRDEKGRyKRFHGAFSGGFSAGYFNTVGSKEGWTPSTFVSSRQNRADKSALGPEDFMDEEDLSEFGiAPKAI 110
Cdd:pfam07713   1 YVPVWKQEVRDEQGR-RRFHGAFTGGFSAGYFNTVGSKEGWTPSTFKSSRSNRAKKKQQRPEDFMDEEDLGEFG-APRQL 78


                  ....*.
gi 157819909  111 VTTDDF 116
Cdd:pfam07713  79 RTTDEF 84
G-patch pfam01585
G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in ...
 154-172 8.54e-05

G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in proteins that contain RNA binding domains. This suggests that this domain may have an RNA binding function. This domain has seven highly conserved glycines.


Pssm-ID: 396249 [Multi-domain]  Cd Length: 45  Bit Score: 40.57  E-value: 8.54e-05
                          10
                  ....*....|....*....
gi 157819909  154 SVGFELLRKMGWKEGQGVG 172
Cdd:pfam01585   3 NIGFKLLQKMGWKEGQGLG 21
G_patch smart00443
glycine rich nucleic binding domain; A predicted glycine rich nucleic binding domain found in ...
 154-172 6.25e-04

glycine rich nucleic binding domain; A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins.


Pssm-ID: 197727 [Multi-domain]  Cd Length: 47  Bit Score: 38.29  E-value: 6.25e-04
                           10
                   ....*....|....*....
gi 157819909   154 SVGFELLRKMGWKEGQGVG 172
Cdd:smart00443   5 NIGAKLLRKMGWKEGQGLG 23
 
Name Accession Description Interval E-value
DUF1604 pfam07713
Protein of unknown function (DUF1604); This family is found at the N-terminus of several ...
 31-116 2.10e-47

Protein of unknown function (DUF1604); This family is found at the N-terminus of several eukaryotic RNA processing proteins.


Pssm-ID: 462241  Cd Length: 84  Bit Score: 163.07  E-value: 2.10e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819909   31 PIPLQDQTVRDEKGRyKRFHGAFSGGFSAGYFNTVGSKEGWTPSTFVSSRQNRADKSALGPEDFMDEEDLSEFGiAPKAI 110
Cdd:pfam07713   1 YVPVWKQEVRDEQGR-RRFHGAFTGGFSAGYFNTVGSKEGWTPSTFKSSRSNRAKKKQQRPEDFMDEEDLGEFG-APRQL 78


                  ....*.
gi 157819909  111 VTTDDF 116
Cdd:pfam07713  79 RTTDEF 84
G-patch pfam01585
G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in ...
 154-172 8.54e-05

G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in proteins that contain RNA binding domains. This suggests that this domain may have an RNA binding function. This domain has seven highly conserved glycines.


Pssm-ID: 396249 [Multi-domain]  Cd Length: 45  Bit Score: 40.57  E-value: 8.54e-05
                          10
                  ....*....|....*....
gi 157819909  154 SVGFELLRKMGWKEGQGVG 172
Cdd:pfam01585   3 NIGFKLLQKMGWKEGQGLG 21
G_patch smart00443
glycine rich nucleic binding domain; A predicted glycine rich nucleic binding domain found in ...
 154-172 6.25e-04

glycine rich nucleic binding domain; A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins.


Pssm-ID: 197727 [Multi-domain]  Cd Length: 47  Bit Score: 38.29  E-value: 6.25e-04
                           10
                   ....*....|....*....
gi 157819909   154 SVGFELLRKMGWKEGQGVG 172
Cdd:smart00443   5 NIGAKLLRKMGWKEGQGLG 23
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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