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Conserved domains on  [gi|157822895|ref|NP_001101901|]
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tRNA-uridine aminocarboxypropyltransferase 2 [Rattus norvegicus]

Protein Classification

tRNA-uridine aminocarboxypropyltransferase( domain architecture ID 10512228)

tRNA-uridine aminocarboxypropyltransferase catalyzes the transfer of the aminocarboxypropyl group from S-adenosylmethionine to the N3 position of uridine within tRNAs

EC:  2.5.1.25
Gene Ontology:  GO:0006400|GO:0016432

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DTW pfam03942
DTW domain; This presumed domain is found in bacterial and eukaryotic proteins. Its function ...
66-256 1.61e-61

DTW domain; This presumed domain is found in bacterial and eukaryotic proteins. Its function is unknown. The domain contains multiple conserved motifs including a DTXW motif that this domain has been named after.


:

Pssm-ID: 461101  Cd Length: 195  Bit Score: 193.63  E-value: 1.61e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822895   66 RPECSRCSRPQKVCLCPYLPvrPLQIS-THLYIIQHPAEESKVLRTVPLLAACLPPDKCTVkiGRRFSEerDIELSTVCR 144
Cdd:pfam03942   1 RPRCPRCLRPVEVCLCSLIP--PLVTLpTRVLILQHPNEDGKPTNTGRLLALSLPNSRAFV--GSRFEP--DPELLALLA 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822895  145 DSGT--LILYPGAEATNLEEFILDAPVYPS-------TIILIDGTWSQAKDIFYKNSLFRLPKQVQLKTSICSQYVIRMQ 215
Cdd:pfam03942  75 DPKYqpVLLFPGEDAVSLEDVFSSLSLLRPgaegkrpLLILLDGTWRQARKMFRKSPYLQGLPRVSLPPERLSQYRLRKQ 154
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 157822895  216 PTNRCLSTLECAAAALSVLEKNSCIQETLLRPLQALCSFQL 256
Cdd:pfam03942 155 PRDGCLSTIEAAAYALSELEEDEGAADNLLDFFDAMVERQL 195
 
Name Accession Description Interval E-value
DTW pfam03942
DTW domain; This presumed domain is found in bacterial and eukaryotic proteins. Its function ...
66-256 1.61e-61

DTW domain; This presumed domain is found in bacterial and eukaryotic proteins. Its function is unknown. The domain contains multiple conserved motifs including a DTXW motif that this domain has been named after.


Pssm-ID: 461101  Cd Length: 195  Bit Score: 193.63  E-value: 1.61e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822895   66 RPECSRCSRPQKVCLCPYLPvrPLQIS-THLYIIQHPAEESKVLRTVPLLAACLPPDKCTVkiGRRFSEerDIELSTVCR 144
Cdd:pfam03942   1 RPRCPRCLRPVEVCLCSLIP--PLVTLpTRVLILQHPNEDGKPTNTGRLLALSLPNSRAFV--GSRFEP--DPELLALLA 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822895  145 DSGT--LILYPGAEATNLEEFILDAPVYPS-------TIILIDGTWSQAKDIFYKNSLFRLPKQVQLKTSICSQYVIRMQ 215
Cdd:pfam03942  75 DPKYqpVLLFPGEDAVSLEDVFSSLSLLRPgaegkrpLLILLDGTWRQARKMFRKSPYLQGLPRVSLPPERLSQYRLRKQ 154
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 157822895  216 PTNRCLSTLECAAAALSVLEKNSCIQETLLRPLQALCSFQL 256
Cdd:pfam03942 155 PRDGCLSTIEAAAYALSELEEDEGAADNLLDFFDAMVERQL 195
TapT COG3148
tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain [Translation, ribosomal ...
65-271 9.37e-43

tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain [Translation, ribosomal structure and biogenesis];


Pssm-ID: 442382  Cd Length: 211  Bit Score: 145.83  E-value: 9.37e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822895  65 RRPECSRCSRPQKVCLCPYLPvrPLQISTHLYIIQHPAEESKVLRTVPLLAACLPpdKCTVKIGRRFSEERDIELSTVCR 144
Cdd:COG3148    8 RVPRCPRCLLPQSLCLCALIP--PLDTRTRVLLLQHPKEAKKPKNTGRLIALSLP--NTELFVGERFEPDPALLALLADP 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822895 145 DSGTLILYPGAEATNLEEFILDAPVYPSTIILIDGTWSQAKDIFYKNS-LFRLPKqVQLKTSICSQYVIRMQPTNRCLST 223
Cdd:COG3148   84 QRQPYLLFPGEDAAPLRVVAPPAAGKPPLLILLDGTWRKARKMFRLSPwLDALPR-LSLPPPPPSRYRLRKAPREGQLST 162
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 157822895 224 LECAAAALSVLEkNSCIQETLLRPLQALCSFQLQHGAQVRLSKEYLLK 271
Cdd:COG3148  163 LEAAALALALLE-GPEAAQPLLAAFDAFVERYLAGRGRRPRERNRRAS 209
 
Name Accession Description Interval E-value
DTW pfam03942
DTW domain; This presumed domain is found in bacterial and eukaryotic proteins. Its function ...
66-256 1.61e-61

DTW domain; This presumed domain is found in bacterial and eukaryotic proteins. Its function is unknown. The domain contains multiple conserved motifs including a DTXW motif that this domain has been named after.


Pssm-ID: 461101  Cd Length: 195  Bit Score: 193.63  E-value: 1.61e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822895   66 RPECSRCSRPQKVCLCPYLPvrPLQIS-THLYIIQHPAEESKVLRTVPLLAACLPPDKCTVkiGRRFSEerDIELSTVCR 144
Cdd:pfam03942   1 RPRCPRCLRPVEVCLCSLIP--PLVTLpTRVLILQHPNEDGKPTNTGRLLALSLPNSRAFV--GSRFEP--DPELLALLA 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822895  145 DSGT--LILYPGAEATNLEEFILDAPVYPS-------TIILIDGTWSQAKDIFYKNSLFRLPKQVQLKTSICSQYVIRMQ 215
Cdd:pfam03942  75 DPKYqpVLLFPGEDAVSLEDVFSSLSLLRPgaegkrpLLILLDGTWRQARKMFRKSPYLQGLPRVSLPPERLSQYRLRKQ 154
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 157822895  216 PTNRCLSTLECAAAALSVLEKNSCIQETLLRPLQALCSFQL 256
Cdd:pfam03942 155 PRDGCLSTIEAAAYALSELEEDEGAADNLLDFFDAMVERQL 195
TapT COG3148
tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain [Translation, ribosomal ...
65-271 9.37e-43

tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain [Translation, ribosomal structure and biogenesis];


Pssm-ID: 442382  Cd Length: 211  Bit Score: 145.83  E-value: 9.37e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822895  65 RRPECSRCSRPQKVCLCPYLPvrPLQISTHLYIIQHPAEESKVLRTVPLLAACLPpdKCTVKIGRRFSEERDIELSTVCR 144
Cdd:COG3148    8 RVPRCPRCLLPQSLCLCALIP--PLDTRTRVLLLQHPKEAKKPKNTGRLIALSLP--NTELFVGERFEPDPALLALLADP 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822895 145 DSGTLILYPGAEATNLEEFILDAPVYPSTIILIDGTWSQAKDIFYKNS-LFRLPKqVQLKTSICSQYVIRMQPTNRCLST 223
Cdd:COG3148   84 QRQPYLLFPGEDAAPLRVVAPPAAGKPPLLILLDGTWRKARKMFRLSPwLDALPR-LSLPPPPPSRYRLRKAPREGQLST 162
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 157822895 224 LECAAAALSVLEkNSCIQETLLRPLQALCSFQLQHGAQVRLSKEYLLK 271
Cdd:COG3148  163 LEAAALALALLE-GPEAAQPLLAAFDAFVERYLAGRGRRPRERNRRAS 209
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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