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Conserved domains on  [gi|565671710|ref|NP_001135780|]
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MAM and LDL-receptor class A domain-containing protein 1 precursor [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
865-1021 1.83e-48

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


:

Pssm-ID: 99706  Cd Length: 157  Bit Score: 170.25  E-value: 1.83e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  865 CNFETGICNWEQDAKDDFDWTRSQGPTPTLNTGPmkDNTLGTAKGHYLYIESSEPQaFQDSAALLSPILNATDTKGCtFR 944
Cdd:cd06263     1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPP--DHTHGTGSGHYLYVESSSGR-EGQKARLLSPLLPPPRSSHC-LS 76
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 565671710  945 FYYHMFGKRIYRLAIYQRIWSDSRGQLLWQIFGNQGNRWIRKHLNISS-RQPFQILVEASVGDGFTGDIAIDDLSFMD 1021
Cdd:cd06263    77 FWYHMYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSAsSKPFQVVFEGVRGSGSRGDIALDDISLSP 154
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1307-1461 2.01e-40

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


:

Pssm-ID: 99706  Cd Length: 157  Bit Score: 147.14  E-value: 2.01e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710 1307 CDFEFDLCSWKQEKDEDFDWNLKASSIPAAGTEPaaDHTLGNSSGHYIFIKSLFPqQPMRAARISSPVIS-KRSKNCkII 1385
Cdd:cd06263     1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPP--DHTHGTGSGHYLYVESSSG-REGQKARLLSPLLPpPRSSHC-LS 76
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 565671710 1386 FHYHMYGNGIGALTLMQVSVTNQTKVLL-NLTVEQGNFWRREELSLFG-DEDFQLKFEGRVGKGQRGDIALDDIVLTE 1461
Cdd:cd06263    77 FWYHMYGSGVGTLNVYVREEGGGLGTLLwSASGGQGNQWQEAEVTLSAsSKPFQVVFEGVRGSGSRGDIALDDISLSP 154
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1090-1253 9.02e-39

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


:

Pssm-ID: 99706  Cd Length: 157  Bit Score: 142.52  E-value: 9.02e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710 1090 CSFEKrSLCKWYQpipvhllQDSNTFRWGLGNGISIHHGeenhrPSVDHTQNTTDGWYLYADSSNGKFGDTADILTPIIS 1169
Cdd:cd06263     1 CDFED-GLCGWTQ-------DSTDDFDWTRVSGSTPSPG-----TPPDHTHGTGSGHYLYVESSSGREGQKARLLSPLLP 67
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710 1170 LT-GPKCtLVFWTHMNGATVGSLQVLIKKDN--VTSKLWAQTGQQGAQWKRAEVFLG-IRSHTQIVFRAKRGISYIGDVA 1245
Cdd:cd06263    68 PPrSSHC-LSFWYHMYGSGVGTLNVYVREEGggLGTLLWSASGGQGNQWQEAEVTLSaSSKPFQVVFEGVRGSGSRGDIA 146

                  ....*...
gi 565671710 1246 VDDISFQD 1253
Cdd:cd06263   147 LDDISLSP 154
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1729-1890 7.61e-37

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


:

Pssm-ID: 99706  Cd Length: 157  Bit Score: 137.12  E-value: 7.61e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710 1729 CNFETSsgnwttACSLTQDSEDDLDWAIGSRIPAKALIPDSDHTPGSGQHFLYVNSSGSKEGSVARITTSKSFPASLGMC 1808
Cdd:cd06263     1 CDFEDG------LCGWTQDSTDDFDWTRVSGSTPSPGTPPDHTHGTGSGHYLYVESSSGREGQKARLLSPLLPPPRSSHC 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710 1809 tVRFWFYMIDpRSMGILKVYTIEESG-LNILVWSVIGNKRTGWTYGSVPLSSNS-PFKVAFEADLDGNEDIFIALDDISF 1886
Cdd:cd06263    75 -LSFWYHMYG-SGVGTLNVYVREEGGgLGTLLWSASGGQGNQWQEAEVTLSASSkPFQVVFEGVRGSGSRGDIALDDISL 152

                  ....*
gi 565671710 1887 TP-EC 1890
Cdd:cd06263   153 SPgPC 157
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
654-813 1.39e-35

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


:

Pssm-ID: 99706  Cd Length: 157  Bit Score: 133.27  E-value: 1.39e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  654 CDFEANSCDWfEAISGDHFDWIRSSQSELSADfehqaPPRDHSLNASQGHFMFILKKSSSLWQVAKLQSPTFSQT-GPGC 732
Cdd:cd06263     1 CDFEDGLCGW-TQDSTDDFDWTRVSGSTPSPG-----TPPDHTHGTGSGHYLYVESSSGREGQKARLLSPLLPPPrSSHC 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  733 iLSFWFYNYGLSVGAAELQLHMENSHDSTVIWRVLYNQGKQWLEATIQLGRLSQPFHLSLDKVSLGIYDGVSAIDDIRFE 812
Cdd:cd06263    75 -LSFWYHMYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVRGSGSRGDIALDDISLS 153

                  .
gi 565671710  813 N 813
Cdd:cd06263   154 P 154
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1521-1673 1.70e-34

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


:

Pssm-ID: 99706  Cd Length: 157  Bit Score: 130.19  E-value: 1.70e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710 1521 CTFEKGWCGWQNSQADNFDWVLGVGSHQSLRPPKDHTLGNENGHFMYLEATAvGLRGDKAHFRS-TMWRESSAACtMSFW 1599
Cdd:cd06263     1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPPDHTHGTGSGHYLYVESSS-GREGQKARLLSpLLPPPRSSHC-LSFW 78
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 565671710 1600 YFVSAKATGSIQILIKTEKG--LSKVWQESkQNPGNHWQKADILLGKLRN-FEVIFQGIRTRDLGGGAAIDDIEFKN 1673
Cdd:cd06263    79 YHMYGSGVGTLNVYVREEGGglGTLLWSAS-GGQGNQWQEAEVTLSASSKpFQVVFEGVRGSGSRGDIALDDISLSP 154
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
73-226 3.06e-26

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


:

Pssm-ID: 99706  Cd Length: 157  Bit Score: 106.69  E-value: 3.06e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   73 CDFEDGLCHMTQDQSLQPSWTKRSGMIGLS-PPFYDHNGDVSAHFLSLVSRVDSISSS--LRSRVFLPTNDQHdCqITFY 149
Cdd:cd06263     1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPgTPPDHTHGTGSGHYLYVESSSGREGQKarLLSPLLPPPRSSH-C-LSFW 78
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 565671710  150 YF-SCQVSGKLMVGLQTACGGPIQHLWQNTAALPNQWERNVIKIQS-SQRFQVVFEGQMASTYEQDevIAIDDISFSSG 226
Cdd:cd06263    79 YHmYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSAsSKPFQVVFEGVRGSGSRGD--IALDDISLSPG 155
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
476-632 4.13e-24

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


:

Pssm-ID: 99706  Cd Length: 157  Bit Score: 100.53  E-value: 4.13e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  476 CDFESGFCGWEPFLTEDSHWKLMKGLNNgeHHFPAADHTANINHGSFIYLEA-QRSPG-VAKLGSPVLTklLTASTPCqV 553
Cdd:cd06263     1 CDFEDGLCGWTQDSTDDFDWTRVSGSTP--SPGTPPDHTHGTGSGHYLYVESsSGREGqKARLLSPLLP--PPRSSHC-L 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  554 QFWYHLS--QHSNLSVFTRTSLDGNLQKQGKIIRFSESQWSHAKIDLiaeaGESTLPFQLILEATVLSSNA-TVALDDIS 630
Cdd:cd06263    76 SFWYHMYgsGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTL----SASSKPFQVVFEGVRGSGSRgDIALDDIS 151

                  ..
gi 565671710  631 VS 632
Cdd:cd06263   152 LS 153
MAM super family cl46915
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
270-418 7.42e-14

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


The actual alignment was detected with superfamily member cd06263:

Pssm-ID: 99706  Cd Length: 157  Bit Score: 71.25  E-value: 7.42e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  270 CGFEFDMCEWTSEASAGqISWMRTKAREIPafESTPQQDQGGDDEGYYVWVGAKHGftlnHLDSRAYLNSSVCH-CLGKS 348
Cdd:cd06263     1 CDFEDGLCGWTQDSTDD-FDWTRVSGSTPS--PGTPPDHTHGTGSGHYLYVESSSG----REGQKARLLSPLLPpPRSSH 73
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 565671710  349 ChLQFYYAMESS---VLRV--RLYNNKEEEIFWTYNISTHSQWVKADVLIPEDLKTFKIIFEGTLLS-QRSFIALD 418
Cdd:cd06263    74 C-LSFWYHMYGSgvgTLNVyvREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVRGSgSRGDIALD 148
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1263-1295 2.54e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


:

Pssm-ID: 197566  Cd Length: 33  Bit Score: 54.18  E-value: 2.54e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 565671710   1263 KCTDHEFMCANKHCIAKDKLCDFVNDCADNSDE 1295
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1050-1085 5.20e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 50.67  E-value: 5.20e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 565671710 1050 CTDNEFICRsDGHCIEKMQKCDFKYDCPDKSDEASC 1085
Cdd:cd00112     1 CPPNEFRCA-NGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
434-465 6.03e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


:

Pssm-ID: 197566  Cd Length: 33  Bit Score: 50.32  E-value: 6.03e-08
                            10        20        30
                    ....*....|....*....|....*....|..
gi 565671710    434 CSADEFPCTSGQCIAKESVCDSRQDCSDESDE 465
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1684-1719 1.44e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.13  E-value: 1.44e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 565671710 1684 CPEiTDFLCRDKKCIASHLLCDYKPDCSDRSDEAHC 1719
Cdd:cd00112     1 CPP-NEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1903-1938 5.40e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.59  E-value: 5.40e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 565671710 1903 CEADQFSCiYTLQCVPLSGKCDGHEDCIDGSDEMDC 1938
Cdd:cd00112     1 CPPNEFRC-ANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1947-1981 5.73e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.59  E-value: 5.73e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 565671710 1947 CSNMEFPCSTDECIPSLLLCDGVPDCHFNEDELIC 1981
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1483-1517 4.59e-05

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 42.19  E-value: 4.59e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 565671710 1483 CPLGYRECHNGKCYRLEQSCNFVDNCGDNTDENEC 1517
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
38-67 2.08e-04

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 40.27  E-value: 2.08e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 565671710   38 FQCDNGVSLPPDSICDFTDQCGDSSDERHC 67
Cdd:cd00112     6 FRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
EGF pfam00008
EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very ...
2025-2055 5.88e-04

EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains.


:

Pssm-ID: 394967  Cd Length: 31  Bit Score: 38.90  E-value: 5.88e-04
                           10        20        30
                   ....*....|....*....|....*....|.
gi 565671710  2025 CPLNYCRNGGTCVVEKNGPMCRCRQGWKGNR 2055
Cdd:pfam00008    1 CAPNPCSNGGTCVDTPGGYTCICPEGYTGKR 31
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
827-859 1.02e-03

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 38.34  E-value: 1.02e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 565671710  827 DHFWCRHTRaCIEKLRLCDLVDDCGDRTDEVNC 859
Cdd:cd00112     4 NEFRCANGR-CIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1986-2022 9.47e-03

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 35.65  E-value: 9.47e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 565671710 1986 CSNGALVCASSnSCIPAHQRCDGFADCMDfQLDESSC 2022
Cdd:cd00112     1 CPPNEFRCANG-RCIPSSWVCDGEDDCGD-GSDEENC 35
 
Name Accession Description Interval E-value
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
865-1021 1.83e-48

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 170.25  E-value: 1.83e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  865 CNFETGICNWEQDAKDDFDWTRSQGPTPTLNTGPmkDNTLGTAKGHYLYIESSEPQaFQDSAALLSPILNATDTKGCtFR 944
Cdd:cd06263     1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPP--DHTHGTGSGHYLYVESSSGR-EGQKARLLSPLLPPPRSSHC-LS 76
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 565671710  945 FYYHMFGKRIYRLAIYQRIWSDSRGQLLWQIFGNQGNRWIRKHLNISS-RQPFQILVEASVGDGFTGDIAIDDLSFMD 1021
Cdd:cd06263    77 FWYHMYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSAsSKPFQVVFEGVRGSGSRGDIALDDISLSP 154
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
865-1022 2.30e-48

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 170.24  E-value: 2.30e-48
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   865 CNFETG-ICNWEQDAKDDFDWTRSQGPTPtlNTGPMKDNTLGTAKGHYLYIESSEPQAFQdSAALLSPILNATDTKGCtF 943
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDDFDWERVSGPSV--KTGPSSDHTQGTGSGHFMYVDTSSGAPGQ-TARLLSPLLPPSRSPQC-L 76
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   944 RFYYHMFGKRIYRLAIYQRIWSDSRGQLLWQIFGNQGNRWIRKHLNISSR-QPFQILVEASVGDGFTGDIAIDDLSFM-- 1020
Cdd:pfam00629   77 RFWYHMSGSGVGTLRVYVRENGGTLDTLLWSISGDQGPSWKEARVTLSSStQPFQVVFEGIRGGGSRGGIALDDISLSsg 156

                   ..
gi 565671710  1021 DC 1022
Cdd:pfam00629  157 PC 158
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1307-1461 2.01e-40

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 147.14  E-value: 2.01e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710 1307 CDFEFDLCSWKQEKDEDFDWNLKASSIPAAGTEPaaDHTLGNSSGHYIFIKSLFPqQPMRAARISSPVIS-KRSKNCkII 1385
Cdd:cd06263     1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPP--DHTHGTGSGHYLYVESSSG-REGQKARLLSPLLPpPRSSHC-LS 76
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 565671710 1386 FHYHMYGNGIGALTLMQVSVTNQTKVLL-NLTVEQGNFWRREELSLFG-DEDFQLKFEGRVGKGQRGDIALDDIVLTE 1461
Cdd:cd06263    77 FWYHMYGSGVGTLNVYVREEGGGLGTLLwSASGGQGNQWQEAEVTLSAsSKPFQVVFEGVRGSGSRGDIALDDISLSP 154
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1090-1253 9.02e-39

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 142.52  E-value: 9.02e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710 1090 CSFEKrSLCKWYQpipvhllQDSNTFRWGLGNGISIHHGeenhrPSVDHTQNTTDGWYLYADSSNGKFGDTADILTPIIS 1169
Cdd:cd06263     1 CDFED-GLCGWTQ-------DSTDDFDWTRVSGSTPSPG-----TPPDHTHGTGSGHYLYVESSSGREGQKARLLSPLLP 67
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710 1170 LT-GPKCtLVFWTHMNGATVGSLQVLIKKDN--VTSKLWAQTGQQGAQWKRAEVFLG-IRSHTQIVFRAKRGISYIGDVA 1245
Cdd:cd06263    68 PPrSSHC-LSFWYHMYGSGVGTLNVYVREEGggLGTLLWSASGGQGNQWQEAEVTLSaSSKPFQVVFEGVRGSGSRGDIA 146

                  ....*...
gi 565671710 1246 VDDISFQD 1253
Cdd:cd06263   147 LDDISLSP 154
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
860-1021 1.51e-38

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 142.10  E-value: 1.51e-38
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710    860 APELQCNFETG-ICNWEQDAKDDFDWTRSQGPTPtlNTGPMKDNTLGTakGHYLYIESSEPQAFQdSAALLSPILNATDT 938
Cdd:smart00137    1 TSPGNCDFEEGsTCGWHQDSNDDGHWERVSSATG--IPGPNRDHTTGN--GHFMFFETSSGAEGQ-TARLLSPPLYENRS 75
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710    939 KGCtFRFYYHMFGKRIYRLAIYQRIWSDSRGQLLWQIFGNQGNRWIRKHLNISS-RQPFQILVEASVGDGFTGDIAIDDL 1017
Cdd:smart00137   76 THC-LTFWYYMYGSGSGTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSSwPQPFQVVFEGTRGKGHSGYIALDDI 154

                    ....
gi 565671710   1018 SFMD 1021
Cdd:smart00137  155 LLSN 158
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1729-1890 7.61e-37

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 137.12  E-value: 7.61e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710 1729 CNFETSsgnwttACSLTQDSEDDLDWAIGSRIPAKALIPDSDHTPGSGQHFLYVNSSGSKEGSVARITTSKSFPASLGMC 1808
Cdd:cd06263     1 CDFEDG------LCGWTQDSTDDFDWTRVSGSTPSPGTPPDHTHGTGSGHYLYVESSSGREGQKARLLSPLLPPPRSSHC 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710 1809 tVRFWFYMIDpRSMGILKVYTIEESG-LNILVWSVIGNKRTGWTYGSVPLSSNS-PFKVAFEADLDGNEDIFIALDDISF 1886
Cdd:cd06263    75 -LSFWYHMYG-SGVGTLNVYVREEGGgLGTLLWSASGGQGNQWQEAEVTLSASSkPFQVVFEGVRGSGSRGDIALDDISL 152

                  ....*
gi 565671710 1887 TP-EC 1890
Cdd:cd06263   153 SPgPC 157
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
654-813 1.39e-35

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 133.27  E-value: 1.39e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  654 CDFEANSCDWfEAISGDHFDWIRSSQSELSADfehqaPPRDHSLNASQGHFMFILKKSSSLWQVAKLQSPTFSQT-GPGC 732
Cdd:cd06263     1 CDFEDGLCGW-TQDSTDDFDWTRVSGSTPSPG-----TPPDHTHGTGSGHYLYVESSSGREGQKARLLSPLLPPPrSSHC 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  733 iLSFWFYNYGLSVGAAELQLHMENSHDSTVIWRVLYNQGKQWLEATIQLGRLSQPFHLSLDKVSLGIYDGVSAIDDIRFE 812
Cdd:cd06263    75 -LSFWYHMYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVRGSGSRGDIALDDISLS 153

                  .
gi 565671710  813 N 813
Cdd:cd06263   154 P 154
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
1729-1889 1.55e-35

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 133.26  E-value: 1.55e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  1729 CNFETSSgnwttACSLTQDSEDDLDWAIGSRIPAKAlIPDSDHTPGSGQ-HFLYVNSSGSKEGSVARITtSKSFPASLGM 1807
Cdd:pfam00629    1 CDFEDGN-----LCGWTQDSSDDFDWERVSGPSVKT-GPSSDHTQGTGSgHFMYVDTSSGAPGQTARLL-SPLLPPSRSP 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  1808 CTVRFWFYMIDPrSMGILKVYTIEESG-LNILVWSVIGNKRTGWTYGSVPLSSNS-PFKVAFEADLDGNEDIFIALDDIS 1885
Cdd:pfam00629   74 QCLRFWYHMSGS-GVGTLRVYVRENGGtLDTLLWSISGDQGPSWKEARVTLSSSTqPFQVVFEGIRGGGSRGGIALDDIS 152

                   ....
gi 565671710  1886 FTPE 1889
Cdd:pfam00629  153 LSSG 156
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
654-814 1.57e-35

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 133.26  E-value: 1.57e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   654 CDFE-ANSCDWFEAISgDHFDWIRSSqselsADFEHQAPPRDHSLNASQGHFMFILKKSSSLWQVAKLQSPTFSQTGPGC 732
Cdd:pfam00629    1 CDFEdGNLCGWTQDSS-DDFDWERVS-----GPSVKTGPSSDHTQGTGSGHFMYVDTSSGAPGQTARLLSPLLPPSRSPQ 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   733 ILSFWFYNYGLSVGAAELQLHMENSHDSTVIWRVLYNQGKQWLEATIQLGRLSQPFHLSLDKVSLGIYDGVSAIDDIRF- 811
Cdd:pfam00629   75 CLRFWYHMSGSGVGTLRVYVRENGGTLDTLLWSISGDQGPSWKEARVTLSSSTQPFQVVFEGIRGGGSRGGIALDDISLs 154

                   ....
gi 565671710   812 -ENC 814
Cdd:pfam00629  155 sGPC 158
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
1090-1255 1.03e-34

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 130.95  E-value: 1.03e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  1090 CSFEKRSLCKWYQPIPVHllqdsntFRWGLGNGISIHHGeenhrPSVDHTQNTTDGWYLYADSSNGKFGDTADILTPIIS 1169
Cdd:pfam00629    1 CDFEDGNLCGWTQDSSDD-------FDWERVSGPSVKTG-----PSSDHTQGTGSGHFMYVDTSSGAPGQTARLLSPLLP 68
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  1170 LTGPKCTLVFWTHMNGATVGSLQVLIKKDNVT--SKLWAQTGQQGAQWKRAEVFLGIRSH-TQIVFRAKRGISYIGDVAV 1246
Cdd:pfam00629   69 PSRSPQCLRFWYHMSGSGVGTLRVYVRENGGTldTLLWSISGDQGPSWKEARVTLSSSTQpFQVVFEGIRGGGSRGGIAL 148
                          170
                   ....*....|.
gi 565671710  1247 DDISFQ--DCS 1255
Cdd:pfam00629  149 DDISLSsgPCP 159
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1521-1673 1.70e-34

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 130.19  E-value: 1.70e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710 1521 CTFEKGWCGWQNSQADNFDWVLGVGSHQSLRPPKDHTLGNENGHFMYLEATAvGLRGDKAHFRS-TMWRESSAACtMSFW 1599
Cdd:cd06263     1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPPDHTHGTGSGHYLYVESSS-GREGQKARLLSpLLPPPRSSHC-LSFW 78
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 565671710 1600 YFVSAKATGSIQILIKTEKG--LSKVWQESkQNPGNHWQKADILLGKLRN-FEVIFQGIRTRDLGGGAAIDDIEFKN 1673
Cdd:cd06263    79 YHMYGSGVGTLNVYVREEGGglGTLLWSAS-GGQGNQWQEAEVTLSASSKpFQVVFEGVRGSGSRGDIALDDISLSP 154
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
1521-1671 2.53e-32

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 124.01  E-value: 2.53e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  1521 CTFEKGW-CGWQNSQADNFDWVLGVGSHQSLRPPKDHTLGNENGHFMYLEATAvGLRGDKAHFRS-TMWRESSAACtMSF 1598
Cdd:pfam00629    1 CDFEDGNlCGWTQDSSDDFDWERVSGPSVKTGPSSDHTQGTGSGHFMYVDTSS-GAPGQTARLLSpLLPPSRSPQC-LRF 78
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 565671710  1599 WYFVSAKATGSIQILIKTEKG--LSKVWQeSKQNPGNHWQKADILLGKLRN-FEVIFQGIRTRDLGGGAAIDDIEF 1671
Cdd:pfam00629   79 WYHMSGSGVGTLRVYVRENGGtlDTLLWS-ISGDQGPSWKEARVTLSSSTQpFQVVFEGIRGGGSRGGIALDDISL 153
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
1307-1463 2.04e-30

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 118.62  E-value: 2.04e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  1307 CDFEFD-LCSWKQEKDEDFDWnlKASSIPAAGTEPAADHTLGNSSGHYIFIKSLFPQqPMRAARISSPVISKRSKNCKII 1385
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDDFDW--ERVSGPSVKTGPSSDHTQGTGSGHFMYVDTSSGA-PGQTARLLSPLLPPSRSPQCLR 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  1386 FHYHMYGNGIGALTL-MQVSVTNQTKVLLNLTVEQGNFWRREELSL-FGDEDFQLKFEGRVGKGQRGDIALDDIVLTE-N 1462
Cdd:pfam00629   78 FWYHMSGSGVGTLRVyVRENGGTLDTLLWSISGDQGPSWKEARVTLsSSTQPFQVVFEGIRGGGSRGGIALDDISLSSgP 157

                   .
gi 565671710  1463 C 1463
Cdd:pfam00629  158 C 158
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
1302-1461 1.17e-29

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 116.67  E-value: 1.17e-29
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   1302 TSSGRCDFEFD-LCSWKQEKDEDFDWnlKASSIPAAGTEPAADHTLGNssGHYIFIKSLFPQQPMRAARISSPVISKRSK 1380
Cdd:smart00137    1 TSPGNCDFEEGsTCGWHQDSNDDGHW--ERVSSATGIPGPNRDHTTGN--GHFMFFETSSGAEGQTARLLSPPLYENRST 76
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   1381 NCkIIFHYHMYGNGIGALTL-MQVSVTNQTKVLLNLTVEQGNFWRREELSLFG-DEDFQLKFEGRVGKGQRGDIALDDIV 1458
Cdd:smart00137   77 HC-LTFWYYMYGSGSGTLNVyVRENNGSQDTLLWSRSGTQGGQWLQAEVALSSwPQPFQVVFEGTRGKGHSGYIALDDIL 155

                    ...
gi 565671710   1459 LTE 1461
Cdd:smart00137  156 LSN 158
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
1090-1253 1.16e-26

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 108.20  E-value: 1.16e-26
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   1090 CSFEKRSLCKWyqpipVHLLQDSNTFRWGLGNgisihhgEENHRPSVDHTQNttDGWYLYADSSNGKFGDTADILTPIIS 1169
Cdd:smart00137    6 CDFEEGSTCGW-----HQDSNDDGHWERVSSA-------TGIPGPNRDHTTG--NGHFMFFETSSGAEGQTARLLSPPLY 71
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   1170 LTGPKCTLVFWTHMNGATVGSLQVLIKKDN--VTSKLWAQTGQQGAQWKRAEVFLGIRSHT-QIVFRAKRGISYIGDVAV 1246
Cdd:smart00137   72 ENRSTHCLTFWYYMYGSGSGTLNVYVRENNgsQDTLLWSRSGTQGGQWLQAEVALSSWPQPfQVVFEGTRGKGHSGYIAL 151

                    ....*..
gi 565671710   1247 DDISFQD 1253
Cdd:smart00137  152 DDILLSN 158
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
73-226 3.06e-26

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 106.69  E-value: 3.06e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   73 CDFEDGLCHMTQDQSLQPSWTKRSGMIGLS-PPFYDHNGDVSAHFLSLVSRVDSISSS--LRSRVFLPTNDQHdCqITFY 149
Cdd:cd06263     1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPgTPPDHTHGTGSGHYLYVESSSGREGQKarLLSPLLPPPRSSH-C-LSFW 78
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 565671710  150 YF-SCQVSGKLMVGLQTACGGPIQHLWQNTAALPNQWERNVIKIQS-SQRFQVVFEGQMASTYEQDevIAIDDISFSSG 226
Cdd:cd06263    79 YHmYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSAsSKPFQVVFEGVRGSGSRGD--IALDDISLSPG 155
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
1727-1888 1.34e-25

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 105.12  E-value: 1.34e-25
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   1727 GSCNFEtssgnWTTACSLTQDSEDDLDWAIGSRIPAKALiPDSDHTPGSGqHFLYVNSSGSKEGSVARITtSKSFPASLG 1806
Cdd:smart00137    4 GNCDFE-----EGSTCGWHQDSNDDGHWERVSSATGIPG-PNRDHTTGNG-HFMFFETSSGAEGQTARLL-SPPLYENRS 75
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   1807 MCTVRFWFYMIDPRSmGILKVYTIEESGLNI-LVWSVIGNKRTGWTYGSVPLSSNS-PFKVAFEADLDGNEDIFIALDDI 1884
Cdd:smart00137   76 THCLTFWYYMYGSGS-GTLNVYVRENNGSQDtLLWSRSGTQGGQWLQAEVALSSWPqPFQVVFEGTRGKGHSGYIALDDI 154

                    ....
gi 565671710   1885 SFTP 1888
Cdd:smart00137  155 LLSN 158
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
1520-1673 2.21e-25

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 104.35  E-value: 2.21e-25
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   1520 SCTFEKGW-CGWQNSQADNFDWVLGVGSHQSLRPPKDHTLGneNGHFMYLEATaVGLRGDKAHFRSTMWRESSAACTMSF 1598
Cdd:smart00137    5 NCDFEEGStCGWHQDSNDDGHWERVSSATGIPGPNRDHTTG--NGHFMFFETS-SGAEGQTARLLSPPLYENRSTHCLTF 81
                            90       100       110       120       130       140       150
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 565671710   1599 WYFVSAKATGSIQILIKTEKG--LSKVWqESKQNPGNHWQKADILLGKLRN-FEVIFQGIRTRDLGGGAAIDDIEFKN 1673
Cdd:smart00137   82 WYYMYGSGSGTLNVYVRENNGsqDTLLW-SRSGTQGGQWLQAEVALSSWPQpFQVVFEGTRGKGHSGYIALDDILLSN 158
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
654-813 3.22e-24

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 100.88  E-value: 3.22e-24
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710    654 CDFE-ANSCDWfEAISGDHFDWIRSSQSELSAdfehqAPPRDHSLNasQGHFMFILKKSSSLWQVAKLQSPTFSQTGPGC 732
Cdd:smart00137    6 CDFEeGSTCGW-HQDSNDDGHWERVSSATGIP-----GPNRDHTTG--NGHFMFFETSSGAEGQTARLLSPPLYENRSTH 77
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710    733 ILSFWFYNYGLSVGAaeLQLHMENSHDS--TVIWRVLYNQGKQWLEATIQLGRLSQPFHLSLDKVSLGIYDGVSAIDDIR 810
Cdd:smart00137   78 CLTFWYYMYGSGSGT--LNVYVRENNGSqdTLLWSRSGTQGGQWLQAEVALSSWPQPFQVVFEGTRGKGHSGYIALDDIL 155

                    ...
gi 565671710    811 FEN 813
Cdd:smart00137  156 LSN 158
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
476-632 4.13e-24

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 100.53  E-value: 4.13e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  476 CDFESGFCGWEPFLTEDSHWKLMKGLNNgeHHFPAADHTANINHGSFIYLEA-QRSPG-VAKLGSPVLTklLTASTPCqV 553
Cdd:cd06263     1 CDFEDGLCGWTQDSTDDFDWTRVSGSTP--SPGTPPDHTHGTGSGHYLYVESsSGREGqKARLLSPLLP--PPRSSHC-L 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  554 QFWYHLS--QHSNLSVFTRTSLDGNLQKQGKIIRFSESQWSHAKIDLiaeaGESTLPFQLILEATVLSSNA-TVALDDIS 630
Cdd:cd06263    76 SFWYHMYgsGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTL----SASSKPFQVVFEGVRGSGSRgDIALDDIS 151

                  ..
gi 565671710  631 VS 632
Cdd:cd06263   152 LS 153
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
476-634 5.56e-23

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 97.43  E-value: 5.56e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   476 CDFESG-FCGWEPFLTEDSHWKLMKGLNngEHHFPAADHTANINHGSFIYLEAQRSPG--VAKLGSPVLTklLTASTPCq 552
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDDFDWERVSGPS--VKTGPSSDHTQGTGSGHFMYVDTSSGAPgqTARLLSPLLP--PSRSPQC- 75
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   553 VQFWYHLSQHS--NLSVFTRTSLDGNLQKQGKIIRFSESQWSHAKIDLiaeaGESTLPFQLILEATVLSSNA-TVALDDI 629
Cdd:pfam00629   76 LRFWYHMSGSGvgTLRVYVRENGGTLDTLLWSISGDQGPSWKEARVTL----SSSTQPFQVVFEGIRGGGSRgGIALDDI 151

                   ....*
gi 565671710   630 SVSQE 634
Cdd:pfam00629  152 SLSSG 156
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
73-226 5.74e-20

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 88.96  E-value: 5.74e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710    73 CDFEDG-LCHMTQDQSLQPSWTKRSGMIGLSPPFYDHNGDVSA-HFLSLVSRVDSISSS--LRSRVFLPTNDQHdCqITF 148
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDDFDWERVSGPSVKTGPSSDHTQGTGSgHFMYVDTSSGAPGQTarLLSPLLPPSRSPQ-C-LRF 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   149 YYF-SCQVSGKLMVGLQTACGGPIQHLWQNTAALPNQWERNVIKIQSSQR-FQVVFEGQMASTYEQDevIAIDDISFSSG 226
Cdd:pfam00629   79 WYHmSGSGVGTLRVYVRENGGTLDTLLWSISGDQGPSWKEARVTLSSSTQpFQVVFEGIRGGGSRGG--IALDDISLSSG 156
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
474-632 6.73e-19

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 85.86  E-value: 6.73e-19
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710    474 LTCDFESG-FCGWEPFLTEDSHWKLMKGLNNGEHhfPAADHTanINHGSFIYLEAQ-RSPG-VAKLGSPVLTklLTASTP 550
Cdd:smart00137    4 GNCDFEEGsTCGWHQDSNDDGHWERVSSATGIPG--PNRDHT--TGNGHFMFFETSsGAEGqTARLLSPPLY--ENRSTH 77
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710    551 CqVQFWYHL--SQHSNLSVFTRtslDGNLQKQGKIIRFSE---SQWSHAKIDLIAEAGestlPFQLILEATVLSSNA-TV 624
Cdd:smart00137   78 C-LTFWYYMygSGSGTLNVYVR---ENNGSQDTLLWSRSGtqgGQWLQAEVALSSWPQ----PFQVVFEGTRGKGHSgYI 149

                    ....*...
gi 565671710    625 ALDDISVS 632
Cdd:smart00137  150 ALDDILLS 157
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
270-418 7.42e-14

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 71.25  E-value: 7.42e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  270 CGFEFDMCEWTSEASAGqISWMRTKAREIPafESTPQQDQGGDDEGYYVWVGAKHGftlnHLDSRAYLNSSVCH-CLGKS 348
Cdd:cd06263     1 CDFEDGLCGWTQDSTDD-FDWTRVSGSTPS--PGTPPDHTHGTGSGHYLYVESSSG----REGQKARLLSPLLPpPRSSH 73
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 565671710  349 ChLQFYYAMESS---VLRV--RLYNNKEEEIFWTYNISTHSQWVKADVLIPEDLKTFKIIFEGTLLS-QRSFIALD 418
Cdd:cd06263    74 C-LSFWYHMYGSgvgTLNVyvREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVRGSgSRGDIALD 148
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
73-226 3.40e-12

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 66.60  E-value: 3.40e-12
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710     73 CDFEDG-LCHMTQDQSLQPSWTKRSGMIGLSPPFYDH-NGDVSAHFLSLVSRVDSISSSLRSRVFLPTNDQHdCqITFYY 150
Cdd:smart00137    6 CDFEEGsTCGWHQDSNDDGHWERVSSATGIPGPNRDHtTGNGHFMFFETSSGAEGQTARLLSPPLYENRSTH-C-LTFWY 83
                            90       100       110       120       130       140       150
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 565671710    151 F-SCQVSGKLMVGLQTACGGPIQHLWQNTAALPNQWERNVIKIQSSQR-FQVVFEGQMASTYEQDevIAIDDISFSSG 226
Cdd:smart00137   84 YmYGSGSGTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSSWPQpFQVVFEGTRGKGHSGY--IALDDILLSNG 159
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
270-418 1.06e-09

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 59.28  E-value: 1.06e-09
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710    270 CGFEFD-MCEWtSEASAGQISWMRTKAREipaFESTPQQDQGGDDeGYYVWVGA---KHGftlnhldSRAYLNSSVCHCL 345
Cdd:smart00137    6 CDFEEGsTCGW-HQDSNDDGHWERVSSAT---GIPGPNRDHTTGN-GHFMFFETssgAEG-------QTARLLSPPLYEN 73
                            90       100       110       120       130       140       150
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 565671710    346 GKSCHLQFYYAM---ESSVLRVRLYNNKEEEIFWTYNISTH--SQWVKADVLIPEDLKTFKIIFEGTLLS-QRSFIALD 418
Cdd:smart00137   74 RSTHCLTFWYYMygsGSGTLNVYVRENNGSQDTLLWSRSGTqgGQWLQAEVALSSWPQPFQVVFEGTRGKgHSGYIALD 152
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1263-1295 2.54e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 54.18  E-value: 2.54e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 565671710   1263 KCTDHEFMCANKHCIAKDKLCDFVNDCADNSDE 1295
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
270-418 2.64e-09

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 58.14  E-value: 2.64e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   270 CGFEFD-MCEWTSEASAGqISWMRTKAREIPafeSTPQQD-QGGDDEGYYVWVGAKHGftlnHLDSRAYLNSSVCHCLGK 347
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDD-FDWERVSGPSVK---TGPSSDhTQGTGSGHFMYVDTSSG----APGQTARLLSPLLPPSRS 72
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 565671710   348 SCHLQFYYAMESS-----VLRVRLYNNKEEEIFWTYNISTHSQWVKADVLIPEDLKTFKIIFEGTLLS-QRSFIALD 418
Cdd:pfam00629   73 PQCLRFWYHMSGSgvgtlRVYVRENGGTLDTLLWSISGDQGPSWKEARVTLSSSTQPFQVVFEGIRGGgSRGGIALD 149
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1264-1295 4.78e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 53.36  E-value: 4.78e-09
                          10        20        30
                  ....*....|....*....|....*....|..
gi 565671710 1264 CTDHEFMCANKHCIAKDKLCDFVNDCADNSDE 1295
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1050-1085 5.20e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 50.67  E-value: 5.20e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 565671710 1050 CTDNEFICRsDGHCIEKMQKCDFKYDCPDKSDEASC 1085
Cdd:cd00112     1 CPPNEFRCA-NGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
434-465 6.03e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 50.32  E-value: 6.03e-08
                            10        20        30
                    ....*....|....*....|....*....|..
gi 565671710    434 CSADEFPCTSGQCIAKESVCDSRQDCSDESDE 465
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
434-466 1.17e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.51  E-value: 1.17e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 565671710  434 CSADEFPCTSGQCIAKESVCDSRQDCSDESDED 466
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1684-1719 1.44e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.13  E-value: 1.44e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 565671710 1684 CPEiTDFLCRDKKCIASHLLCDYKPDCSDRSDEAHC 1719
Cdd:cd00112     1 CPP-NEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1903-1938 5.40e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.59  E-value: 5.40e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 565671710 1903 CEADQFSCiYTLQCVPLSGKCDGHEDCIDGSDEMDC 1938
Cdd:cd00112     1 CPPNEFRC-ANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1947-1981 5.73e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.59  E-value: 5.73e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 565671710 1947 CSNMEFPCSTDECIPSLLLCDGVPDCHFNEDELIC 1981
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1947-1978 2.28e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 45.70  E-value: 2.28e-06
                            10        20        30
                    ....*....|....*....|....*....|..
gi 565671710   1947 CSNMEFPCSTDECIPSLLLCDGVPDCHFNEDE 1978
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1050-1082 5.31e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 44.93  E-value: 5.31e-06
                            10        20        30
                    ....*....|....*....|....*....|...
gi 565671710   1050 CTDNEFICRsDGHCIEKMQKCDFKYDCPDKSDE 1082
Cdd:smart00192    2 CPPGEFQCD-NGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
434-465 6.86e-06

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 44.55  E-value: 6.86e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 565671710   434 CSADEFPCTSGQCIAKESVCDSRQDCSDESDE 465
Cdd:pfam00057    3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1684-1716 7.94e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 44.16  E-value: 7.94e-06
                            10        20        30
                    ....*....|....*....|....*....|...
gi 565671710   1684 CPEiTDFLCRDKKCIASHLLCDYKPDCSDRSDE 1716
Cdd:smart00192    2 CPP-GEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1901-1938 1.35e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 43.78  E-value: 1.35e-05
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 565671710  1901 SPCEADQFSCIYTlQCVPLSGKCDGHEDCIDGSDEMDC 1938
Cdd:pfam00057    1 STCSPNEFQCGSG-ECIPRSWVCDGDPDCGDGSDEENC 37
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1686-1719 2.23e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 43.01  E-value: 2.23e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 565671710  1686 EITDFLCRDKKCIASHLLCDYKPDCSDRSDEAHC 1719
Cdd:pfam00057    4 SPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1483-1517 4.59e-05

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 42.19  E-value: 4.59e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 565671710 1483 CPLGYRECHNGKCYRLEQSCNFVDNCGDNTDENEC 1517
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1947-1981 7.45e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 41.85  E-value: 7.45e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 565671710  1947 CSNMEFPCSTDECIPSLLLCDGVPDCHFNEDELIC 1981
Cdd:pfam00057    3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1903-1935 8.53e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 41.46  E-value: 8.53e-05
                            10        20        30
                    ....*....|....*....|....*....|...
gi 565671710   1903 CEADQFSCIYTlQCVPLSGKCDGHEDCIDGSDE 1935
Cdd:smart00192    2 CPPGEFQCDNG-RCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
38-67 2.08e-04

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 40.27  E-value: 2.08e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 565671710   38 FQCDNGVSLPPDSICDFTDQCGDSSDERHC 67
Cdd:cd00112     6 FRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
EGF pfam00008
EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very ...
2025-2055 5.88e-04

EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains.


Pssm-ID: 394967  Cd Length: 31  Bit Score: 38.90  E-value: 5.88e-04
                           10        20        30
                   ....*....|....*....|....*....|.
gi 565671710  2025 CPLNYCRNGGTCVVEKNGPMCRCRQGWKGNR 2055
Cdd:pfam00008    1 CAPNPCSNGGTCVDTPGGYTCICPEGYTGKR 31
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1262-1295 6.54e-04

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 39.15  E-value: 6.54e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 565671710  1262 RKCTDHEFMCANKHCIAKDKLCDFVNDCADNSDE 1295
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
2024-2056 6.74e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 39.16  E-value: 6.74e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 565671710 2024 EC-PLNYCRNGGTCVVEKNGPMCRCRQGWKGNRC 2056
Cdd:cd00054     4 ECaSGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
827-859 1.02e-03

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 38.34  E-value: 1.02e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 565671710  827 DHFWCRHTRaCIEKLRLCDLVDDCGDRTDEVNC 859
Cdd:cd00112     4 NEFRCANGR-CIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1483-1514 1.11e-03

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 38.38  E-value: 1.11e-03
                            10        20        30
                    ....*....|....*....|....*....|..
gi 565671710   1483 CPLGYRECHNGKCYRLEQSCNFVDNCGDNTDE 1514
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1050-1085 3.77e-03

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 36.84  E-value: 3.77e-03
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 565671710  1050 CTDNEFICRSdGHCIEKMQKCDFKYDCPDKSDEASC 1085
Cdd:pfam00057    3 CSPNEFQCGS-GECIPRSWVCDGDPDCGDGSDEENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
38-64 5.29e-03

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 36.46  E-value: 5.29e-03
                            10        20
                    ....*....|....*....|....*..
gi 565671710     38 FQCDNGVSLPPDSICDFTDQCGDSSDE 64
Cdd:smart00192    7 FQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1986-2022 9.47e-03

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 35.65  E-value: 9.47e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 565671710 1986 CSNGALVCASSnSCIPAHQRCDGFADCMDfQLDESSC 2022
Cdd:cd00112     1 CPPNEFRCANG-RCIPSSWVCDGEDDCGD-GSDEENC 35
 
Name Accession Description Interval E-value
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
865-1021 1.83e-48

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 170.25  E-value: 1.83e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  865 CNFETGICNWEQDAKDDFDWTRSQGPTPTLNTGPmkDNTLGTAKGHYLYIESSEPQaFQDSAALLSPILNATDTKGCtFR 944
Cdd:cd06263     1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPP--DHTHGTGSGHYLYVESSSGR-EGQKARLLSPLLPPPRSSHC-LS 76
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 565671710  945 FYYHMFGKRIYRLAIYQRIWSDSRGQLLWQIFGNQGNRWIRKHLNISS-RQPFQILVEASVGDGFTGDIAIDDLSFMD 1021
Cdd:cd06263    77 FWYHMYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSAsSKPFQVVFEGVRGSGSRGDIALDDISLSP 154
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
865-1022 2.30e-48

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 170.24  E-value: 2.30e-48
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   865 CNFETG-ICNWEQDAKDDFDWTRSQGPTPtlNTGPMKDNTLGTAKGHYLYIESSEPQAFQdSAALLSPILNATDTKGCtF 943
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDDFDWERVSGPSV--KTGPSSDHTQGTGSGHFMYVDTSSGAPGQ-TARLLSPLLPPSRSPQC-L 76
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   944 RFYYHMFGKRIYRLAIYQRIWSDSRGQLLWQIFGNQGNRWIRKHLNISSR-QPFQILVEASVGDGFTGDIAIDDLSFM-- 1020
Cdd:pfam00629   77 RFWYHMSGSGVGTLRVYVRENGGTLDTLLWSISGDQGPSWKEARVTLSSStQPFQVVFEGIRGGGSRGGIALDDISLSsg 156

                   ..
gi 565671710  1021 DC 1022
Cdd:pfam00629  157 PC 158
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1307-1461 2.01e-40

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 147.14  E-value: 2.01e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710 1307 CDFEFDLCSWKQEKDEDFDWNLKASSIPAAGTEPaaDHTLGNSSGHYIFIKSLFPqQPMRAARISSPVIS-KRSKNCkII 1385
Cdd:cd06263     1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPP--DHTHGTGSGHYLYVESSSG-REGQKARLLSPLLPpPRSSHC-LS 76
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 565671710 1386 FHYHMYGNGIGALTLMQVSVTNQTKVLL-NLTVEQGNFWRREELSLFG-DEDFQLKFEGRVGKGQRGDIALDDIVLTE 1461
Cdd:cd06263    77 FWYHMYGSGVGTLNVYVREEGGGLGTLLwSASGGQGNQWQEAEVTLSAsSKPFQVVFEGVRGSGSRGDIALDDISLSP 154
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1090-1253 9.02e-39

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 142.52  E-value: 9.02e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710 1090 CSFEKrSLCKWYQpipvhllQDSNTFRWGLGNGISIHHGeenhrPSVDHTQNTTDGWYLYADSSNGKFGDTADILTPIIS 1169
Cdd:cd06263     1 CDFED-GLCGWTQ-------DSTDDFDWTRVSGSTPSPG-----TPPDHTHGTGSGHYLYVESSSGREGQKARLLSPLLP 67
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710 1170 LT-GPKCtLVFWTHMNGATVGSLQVLIKKDN--VTSKLWAQTGQQGAQWKRAEVFLG-IRSHTQIVFRAKRGISYIGDVA 1245
Cdd:cd06263    68 PPrSSHC-LSFWYHMYGSGVGTLNVYVREEGggLGTLLWSASGGQGNQWQEAEVTLSaSSKPFQVVFEGVRGSGSRGDIA 146

                  ....*...
gi 565671710 1246 VDDISFQD 1253
Cdd:cd06263   147 LDDISLSP 154
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
860-1021 1.51e-38

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 142.10  E-value: 1.51e-38
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710    860 APELQCNFETG-ICNWEQDAKDDFDWTRSQGPTPtlNTGPMKDNTLGTakGHYLYIESSEPQAFQdSAALLSPILNATDT 938
Cdd:smart00137    1 TSPGNCDFEEGsTCGWHQDSNDDGHWERVSSATG--IPGPNRDHTTGN--GHFMFFETSSGAEGQ-TARLLSPPLYENRS 75
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710    939 KGCtFRFYYHMFGKRIYRLAIYQRIWSDSRGQLLWQIFGNQGNRWIRKHLNISS-RQPFQILVEASVGDGFTGDIAIDDL 1017
Cdd:smart00137   76 THC-LTFWYYMYGSGSGTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSSwPQPFQVVFEGTRGKGHSGYIALDDI 154

                    ....
gi 565671710   1018 SFMD 1021
Cdd:smart00137  155 LLSN 158
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1729-1890 7.61e-37

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 137.12  E-value: 7.61e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710 1729 CNFETSsgnwttACSLTQDSEDDLDWAIGSRIPAKALIPDSDHTPGSGQHFLYVNSSGSKEGSVARITTSKSFPASLGMC 1808
Cdd:cd06263     1 CDFEDG------LCGWTQDSTDDFDWTRVSGSTPSPGTPPDHTHGTGSGHYLYVESSSGREGQKARLLSPLLPPPRSSHC 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710 1809 tVRFWFYMIDpRSMGILKVYTIEESG-LNILVWSVIGNKRTGWTYGSVPLSSNS-PFKVAFEADLDGNEDIFIALDDISF 1886
Cdd:cd06263    75 -LSFWYHMYG-SGVGTLNVYVREEGGgLGTLLWSASGGQGNQWQEAEVTLSASSkPFQVVFEGVRGSGSRGDIALDDISL 152

                  ....*
gi 565671710 1887 TP-EC 1890
Cdd:cd06263   153 SPgPC 157
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
654-813 1.39e-35

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 133.27  E-value: 1.39e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  654 CDFEANSCDWfEAISGDHFDWIRSSQSELSADfehqaPPRDHSLNASQGHFMFILKKSSSLWQVAKLQSPTFSQT-GPGC 732
Cdd:cd06263     1 CDFEDGLCGW-TQDSTDDFDWTRVSGSTPSPG-----TPPDHTHGTGSGHYLYVESSSGREGQKARLLSPLLPPPrSSHC 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  733 iLSFWFYNYGLSVGAAELQLHMENSHDSTVIWRVLYNQGKQWLEATIQLGRLSQPFHLSLDKVSLGIYDGVSAIDDIRFE 812
Cdd:cd06263    75 -LSFWYHMYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVRGSGSRGDIALDDISLS 153

                  .
gi 565671710  813 N 813
Cdd:cd06263   154 P 154
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
1729-1889 1.55e-35

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 133.26  E-value: 1.55e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  1729 CNFETSSgnwttACSLTQDSEDDLDWAIGSRIPAKAlIPDSDHTPGSGQ-HFLYVNSSGSKEGSVARITtSKSFPASLGM 1807
Cdd:pfam00629    1 CDFEDGN-----LCGWTQDSSDDFDWERVSGPSVKT-GPSSDHTQGTGSgHFMYVDTSSGAPGQTARLL-SPLLPPSRSP 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  1808 CTVRFWFYMIDPrSMGILKVYTIEESG-LNILVWSVIGNKRTGWTYGSVPLSSNS-PFKVAFEADLDGNEDIFIALDDIS 1885
Cdd:pfam00629   74 QCLRFWYHMSGS-GVGTLRVYVRENGGtLDTLLWSISGDQGPSWKEARVTLSSSTqPFQVVFEGIRGGGSRGGIALDDIS 152

                   ....
gi 565671710  1886 FTPE 1889
Cdd:pfam00629  153 LSSG 156
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
654-814 1.57e-35

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 133.26  E-value: 1.57e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   654 CDFE-ANSCDWFEAISgDHFDWIRSSqselsADFEHQAPPRDHSLNASQGHFMFILKKSSSLWQVAKLQSPTFSQTGPGC 732
Cdd:pfam00629    1 CDFEdGNLCGWTQDSS-DDFDWERVS-----GPSVKTGPSSDHTQGTGSGHFMYVDTSSGAPGQTARLLSPLLPPSRSPQ 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   733 ILSFWFYNYGLSVGAAELQLHMENSHDSTVIWRVLYNQGKQWLEATIQLGRLSQPFHLSLDKVSLGIYDGVSAIDDIRF- 811
Cdd:pfam00629   75 CLRFWYHMSGSGVGTLRVYVRENGGTLDTLLWSISGDQGPSWKEARVTLSSSTQPFQVVFEGIRGGGSRGGIALDDISLs 154

                   ....
gi 565671710   812 -ENC 814
Cdd:pfam00629  155 sGPC 158
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
1090-1255 1.03e-34

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 130.95  E-value: 1.03e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  1090 CSFEKRSLCKWYQPIPVHllqdsntFRWGLGNGISIHHGeenhrPSVDHTQNTTDGWYLYADSSNGKFGDTADILTPIIS 1169
Cdd:pfam00629    1 CDFEDGNLCGWTQDSSDD-------FDWERVSGPSVKTG-----PSSDHTQGTGSGHFMYVDTSSGAPGQTARLLSPLLP 68
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  1170 LTGPKCTLVFWTHMNGATVGSLQVLIKKDNVT--SKLWAQTGQQGAQWKRAEVFLGIRSH-TQIVFRAKRGISYIGDVAV 1246
Cdd:pfam00629   69 PSRSPQCLRFWYHMSGSGVGTLRVYVRENGGTldTLLWSISGDQGPSWKEARVTLSSSTQpFQVVFEGIRGGGSRGGIAL 148
                          170
                   ....*....|.
gi 565671710  1247 DDISFQ--DCS 1255
Cdd:pfam00629  149 DDISLSsgPCP 159
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1521-1673 1.70e-34

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 130.19  E-value: 1.70e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710 1521 CTFEKGWCGWQNSQADNFDWVLGVGSHQSLRPPKDHTLGNENGHFMYLEATAvGLRGDKAHFRS-TMWRESSAACtMSFW 1599
Cdd:cd06263     1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPPDHTHGTGSGHYLYVESSS-GREGQKARLLSpLLPPPRSSHC-LSFW 78
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 565671710 1600 YFVSAKATGSIQILIKTEKG--LSKVWQESkQNPGNHWQKADILLGKLRN-FEVIFQGIRTRDLGGGAAIDDIEFKN 1673
Cdd:cd06263    79 YHMYGSGVGTLNVYVREEGGglGTLLWSAS-GGQGNQWQEAEVTLSASSKpFQVVFEGVRGSGSRGDIALDDISLSP 154
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
1521-1671 2.53e-32

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 124.01  E-value: 2.53e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  1521 CTFEKGW-CGWQNSQADNFDWVLGVGSHQSLRPPKDHTLGNENGHFMYLEATAvGLRGDKAHFRS-TMWRESSAACtMSF 1598
Cdd:pfam00629    1 CDFEDGNlCGWTQDSSDDFDWERVSGPSVKTGPSSDHTQGTGSGHFMYVDTSS-GAPGQTARLLSpLLPPSRSPQC-LRF 78
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 565671710  1599 WYFVSAKATGSIQILIKTEKG--LSKVWQeSKQNPGNHWQKADILLGKLRN-FEVIFQGIRTRDLGGGAAIDDIEF 1671
Cdd:pfam00629   79 WYHMSGSGVGTLRVYVRENGGtlDTLLWS-ISGDQGPSWKEARVTLSSSTQpFQVVFEGIRGGGSRGGIALDDISL 153
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
1307-1463 2.04e-30

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 118.62  E-value: 2.04e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  1307 CDFEFD-LCSWKQEKDEDFDWnlKASSIPAAGTEPAADHTLGNSSGHYIFIKSLFPQqPMRAARISSPVISKRSKNCKII 1385
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDDFDW--ERVSGPSVKTGPSSDHTQGTGSGHFMYVDTSSGA-PGQTARLLSPLLPPSRSPQCLR 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  1386 FHYHMYGNGIGALTL-MQVSVTNQTKVLLNLTVEQGNFWRREELSL-FGDEDFQLKFEGRVGKGQRGDIALDDIVLTE-N 1462
Cdd:pfam00629   78 FWYHMSGSGVGTLRVyVRENGGTLDTLLWSISGDQGPSWKEARVTLsSSTQPFQVVFEGIRGGGSRGGIALDDISLSSgP 157

                   .
gi 565671710  1463 C 1463
Cdd:pfam00629  158 C 158
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
1302-1461 1.17e-29

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 116.67  E-value: 1.17e-29
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   1302 TSSGRCDFEFD-LCSWKQEKDEDFDWnlKASSIPAAGTEPAADHTLGNssGHYIFIKSLFPQQPMRAARISSPVISKRSK 1380
Cdd:smart00137    1 TSPGNCDFEEGsTCGWHQDSNDDGHW--ERVSSATGIPGPNRDHTTGN--GHFMFFETSSGAEGQTARLLSPPLYENRST 76
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   1381 NCkIIFHYHMYGNGIGALTL-MQVSVTNQTKVLLNLTVEQGNFWRREELSLFG-DEDFQLKFEGRVGKGQRGDIALDDIV 1458
Cdd:smart00137   77 HC-LTFWYYMYGSGSGTLNVyVRENNGSQDTLLWSRSGTQGGQWLQAEVALSSwPQPFQVVFEGTRGKGHSGYIALDDIL 155

                    ...
gi 565671710   1459 LTE 1461
Cdd:smart00137  156 LSN 158
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
1090-1253 1.16e-26

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 108.20  E-value: 1.16e-26
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   1090 CSFEKRSLCKWyqpipVHLLQDSNTFRWGLGNgisihhgEENHRPSVDHTQNttDGWYLYADSSNGKFGDTADILTPIIS 1169
Cdd:smart00137    6 CDFEEGSTCGW-----HQDSNDDGHWERVSSA-------TGIPGPNRDHTTG--NGHFMFFETSSGAEGQTARLLSPPLY 71
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   1170 LTGPKCTLVFWTHMNGATVGSLQVLIKKDN--VTSKLWAQTGQQGAQWKRAEVFLGIRSHT-QIVFRAKRGISYIGDVAV 1246
Cdd:smart00137   72 ENRSTHCLTFWYYMYGSGSGTLNVYVRENNgsQDTLLWSRSGTQGGQWLQAEVALSSWPQPfQVVFEGTRGKGHSGYIAL 151

                    ....*..
gi 565671710   1247 DDISFQD 1253
Cdd:smart00137  152 DDILLSN 158
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
73-226 3.06e-26

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 106.69  E-value: 3.06e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   73 CDFEDGLCHMTQDQSLQPSWTKRSGMIGLS-PPFYDHNGDVSAHFLSLVSRVDSISSS--LRSRVFLPTNDQHdCqITFY 149
Cdd:cd06263     1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPgTPPDHTHGTGSGHYLYVESSSGREGQKarLLSPLLPPPRSSH-C-LSFW 78
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 565671710  150 YF-SCQVSGKLMVGLQTACGGPIQHLWQNTAALPNQWERNVIKIQS-SQRFQVVFEGQMASTYEQDevIAIDDISFSSG 226
Cdd:cd06263    79 YHmYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSAsSKPFQVVFEGVRGSGSRGD--IALDDISLSPG 155
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
1727-1888 1.34e-25

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 105.12  E-value: 1.34e-25
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   1727 GSCNFEtssgnWTTACSLTQDSEDDLDWAIGSRIPAKALiPDSDHTPGSGqHFLYVNSSGSKEGSVARITtSKSFPASLG 1806
Cdd:smart00137    4 GNCDFE-----EGSTCGWHQDSNDDGHWERVSSATGIPG-PNRDHTTGNG-HFMFFETSSGAEGQTARLL-SPPLYENRS 75
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   1807 MCTVRFWFYMIDPRSmGILKVYTIEESGLNI-LVWSVIGNKRTGWTYGSVPLSSNS-PFKVAFEADLDGNEDIFIALDDI 1884
Cdd:smart00137   76 THCLTFWYYMYGSGS-GTLNVYVRENNGSQDtLLWSRSGTQGGQWLQAEVALSSWPqPFQVVFEGTRGKGHSGYIALDDI 154

                    ....
gi 565671710   1885 SFTP 1888
Cdd:smart00137  155 LLSN 158
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
1520-1673 2.21e-25

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 104.35  E-value: 2.21e-25
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   1520 SCTFEKGW-CGWQNSQADNFDWVLGVGSHQSLRPPKDHTLGneNGHFMYLEATaVGLRGDKAHFRSTMWRESSAACTMSF 1598
Cdd:smart00137    5 NCDFEEGStCGWHQDSNDDGHWERVSSATGIPGPNRDHTTG--NGHFMFFETS-SGAEGQTARLLSPPLYENRSTHCLTF 81
                            90       100       110       120       130       140       150
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 565671710   1599 WYFVSAKATGSIQILIKTEKG--LSKVWqESKQNPGNHWQKADILLGKLRN-FEVIFQGIRTRDLGGGAAIDDIEFKN 1673
Cdd:smart00137   82 WYYMYGSGSGTLNVYVRENNGsqDTLLW-SRSGTQGGQWLQAEVALSSWPQpFQVVFEGTRGKGHSGYIALDDILLSN 158
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
654-813 3.22e-24

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 100.88  E-value: 3.22e-24
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710    654 CDFE-ANSCDWfEAISGDHFDWIRSSQSELSAdfehqAPPRDHSLNasQGHFMFILKKSSSLWQVAKLQSPTFSQTGPGC 732
Cdd:smart00137    6 CDFEeGSTCGW-HQDSNDDGHWERVSSATGIP-----GPNRDHTTG--NGHFMFFETSSGAEGQTARLLSPPLYENRSTH 77
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710    733 ILSFWFYNYGLSVGAaeLQLHMENSHDS--TVIWRVLYNQGKQWLEATIQLGRLSQPFHLSLDKVSLGIYDGVSAIDDIR 810
Cdd:smart00137   78 CLTFWYYMYGSGSGT--LNVYVRENNGSqdTLLWSRSGTQGGQWLQAEVALSSWPQPFQVVFEGTRGKGHSGYIALDDIL 155

                    ...
gi 565671710    811 FEN 813
Cdd:smart00137  156 LSN 158
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
476-632 4.13e-24

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 100.53  E-value: 4.13e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  476 CDFESGFCGWEPFLTEDSHWKLMKGLNNgeHHFPAADHTANINHGSFIYLEA-QRSPG-VAKLGSPVLTklLTASTPCqV 553
Cdd:cd06263     1 CDFEDGLCGWTQDSTDDFDWTRVSGSTP--SPGTPPDHTHGTGSGHYLYVESsSGREGqKARLLSPLLP--PPRSSHC-L 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  554 QFWYHLS--QHSNLSVFTRTSLDGNLQKQGKIIRFSESQWSHAKIDLiaeaGESTLPFQLILEATVLSSNA-TVALDDIS 630
Cdd:cd06263    76 SFWYHMYgsGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTL----SASSKPFQVVFEGVRGSGSRgDIALDDIS 151

                  ..
gi 565671710  631 VS 632
Cdd:cd06263   152 LS 153
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
476-634 5.56e-23

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 97.43  E-value: 5.56e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   476 CDFESG-FCGWEPFLTEDSHWKLMKGLNngEHHFPAADHTANINHGSFIYLEAQRSPG--VAKLGSPVLTklLTASTPCq 552
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDDFDWERVSGPS--VKTGPSSDHTQGTGSGHFMYVDTSSGAPgqTARLLSPLLP--PSRSPQC- 75
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   553 VQFWYHLSQHS--NLSVFTRTSLDGNLQKQGKIIRFSESQWSHAKIDLiaeaGESTLPFQLILEATVLSSNA-TVALDDI 629
Cdd:pfam00629   76 LRFWYHMSGSGvgTLRVYVRENGGTLDTLLWSISGDQGPSWKEARVTL----SSSTQPFQVVFEGIRGGGSRgGIALDDI 151

                   ....*
gi 565671710   630 SVSQE 634
Cdd:pfam00629  152 SLSSG 156
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
73-226 5.74e-20

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 88.96  E-value: 5.74e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710    73 CDFEDG-LCHMTQDQSLQPSWTKRSGMIGLSPPFYDHNGDVSA-HFLSLVSRVDSISSS--LRSRVFLPTNDQHdCqITF 148
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDDFDWERVSGPSVKTGPSSDHTQGTGSgHFMYVDTSSGAPGQTarLLSPLLPPSRSPQ-C-LRF 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   149 YYF-SCQVSGKLMVGLQTACGGPIQHLWQNTAALPNQWERNVIKIQSSQR-FQVVFEGQMASTYEQDevIAIDDISFSSG 226
Cdd:pfam00629   79 WYHmSGSGVGTLRVYVRENGGTLDTLLWSISGDQGPSWKEARVTLSSSTQpFQVVFEGIRGGGSRGG--IALDDISLSSG 156
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
474-632 6.73e-19

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 85.86  E-value: 6.73e-19
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710    474 LTCDFESG-FCGWEPFLTEDSHWKLMKGLNNGEHhfPAADHTanINHGSFIYLEAQ-RSPG-VAKLGSPVLTklLTASTP 550
Cdd:smart00137    4 GNCDFEEGsTCGWHQDSNDDGHWERVSSATGIPG--PNRDHT--TGNGHFMFFETSsGAEGqTARLLSPPLY--ENRSTH 77
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710    551 CqVQFWYHL--SQHSNLSVFTRtslDGNLQKQGKIIRFSE---SQWSHAKIDLIAEAGestlPFQLILEATVLSSNA-TV 624
Cdd:smart00137   78 C-LTFWYYMygSGSGTLNVYVR---ENNGSQDTLLWSRSGtqgGQWLQAEVALSSWPQ----PFQVVFEGTRGKGHSgYI 149

                    ....*...
gi 565671710    625 ALDDISVS 632
Cdd:smart00137  150 ALDDILLS 157
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
270-418 7.42e-14

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 71.25  E-value: 7.42e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710  270 CGFEFDMCEWTSEASAGqISWMRTKAREIPafESTPQQDQGGDDEGYYVWVGAKHGftlnHLDSRAYLNSSVCH-CLGKS 348
Cdd:cd06263     1 CDFEDGLCGWTQDSTDD-FDWTRVSGSTPS--PGTPPDHTHGTGSGHYLYVESSSG----REGQKARLLSPLLPpPRSSH 73
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 565671710  349 ChLQFYYAMESS---VLRV--RLYNNKEEEIFWTYNISTHSQWVKADVLIPEDLKTFKIIFEGTLLS-QRSFIALD 418
Cdd:cd06263    74 C-LSFWYHMYGSgvgTLNVyvREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVRGSgSRGDIALD 148
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
73-226 3.40e-12

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 66.60  E-value: 3.40e-12
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710     73 CDFEDG-LCHMTQDQSLQPSWTKRSGMIGLSPPFYDH-NGDVSAHFLSLVSRVDSISSSLRSRVFLPTNDQHdCqITFYY 150
Cdd:smart00137    6 CDFEEGsTCGWHQDSNDDGHWERVSSATGIPGPNRDHtTGNGHFMFFETSSGAEGQTARLLSPPLYENRSTH-C-LTFWY 83
                            90       100       110       120       130       140       150
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 565671710    151 F-SCQVSGKLMVGLQTACGGPIQHLWQNTAALPNQWERNVIKIQSSQR-FQVVFEGQMASTYEQDevIAIDDISFSSG 226
Cdd:smart00137   84 YmYGSGSGTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSSWPQpFQVVFEGTRGKGHSGY--IALDDILLSNG 159
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
270-418 1.06e-09

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 59.28  E-value: 1.06e-09
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710    270 CGFEFD-MCEWtSEASAGQISWMRTKAREipaFESTPQQDQGGDDeGYYVWVGA---KHGftlnhldSRAYLNSSVCHCL 345
Cdd:smart00137    6 CDFEEGsTCGW-HQDSNDDGHWERVSSAT---GIPGPNRDHTTGN-GHFMFFETssgAEG-------QTARLLSPPLYEN 73
                            90       100       110       120       130       140       150
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 565671710    346 GKSCHLQFYYAM---ESSVLRVRLYNNKEEEIFWTYNISTH--SQWVKADVLIPEDLKTFKIIFEGTLLS-QRSFIALD 418
Cdd:smart00137   74 RSTHCLTFWYYMygsGSGTLNVYVRENNGSQDTLLWSRSGTqgGQWLQAEVALSSWPQPFQVVFEGTRGKgHSGYIALD 152
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1263-1295 2.54e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 54.18  E-value: 2.54e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 565671710   1263 KCTDHEFMCANKHCIAKDKLCDFVNDCADNSDE 1295
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
270-418 2.64e-09

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 58.14  E-value: 2.64e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565671710   270 CGFEFD-MCEWTSEASAGqISWMRTKAREIPafeSTPQQD-QGGDDEGYYVWVGAKHGftlnHLDSRAYLNSSVCHCLGK 347
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDD-FDWERVSGPSVK---TGPSSDhTQGTGSGHFMYVDTSSG----APGQTARLLSPLLPPSRS 72
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 565671710   348 SCHLQFYYAMESS-----VLRVRLYNNKEEEIFWTYNISTHSQWVKADVLIPEDLKTFKIIFEGTLLS-QRSFIALD 418
Cdd:pfam00629   73 PQCLRFWYHMSGSgvgtlRVYVRENGGTLDTLLWSISGDQGPSWKEARVTLSSSTQPFQVVFEGIRGGgSRGGIALD 149
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1264-1295 4.78e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 53.36  E-value: 4.78e-09
                          10        20        30
                  ....*....|....*....|....*....|..
gi 565671710 1264 CTDHEFMCANKHCIAKDKLCDFVNDCADNSDE 1295
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1050-1085 5.20e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 50.67  E-value: 5.20e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 565671710 1050 CTDNEFICRsDGHCIEKMQKCDFKYDCPDKSDEASC 1085
Cdd:cd00112     1 CPPNEFRCA-NGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
434-465 6.03e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 50.32  E-value: 6.03e-08
                            10        20        30
                    ....*....|....*....|....*....|..
gi 565671710    434 CSADEFPCTSGQCIAKESVCDSRQDCSDESDE 465
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
434-466 1.17e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.51  E-value: 1.17e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 565671710  434 CSADEFPCTSGQCIAKESVCDSRQDCSDESDED 466
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1684-1719 1.44e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.13  E-value: 1.44e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 565671710 1684 CPEiTDFLCRDKKCIASHLLCDYKPDCSDRSDEAHC 1719
Cdd:cd00112     1 CPP-NEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1903-1938 5.40e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.59  E-value: 5.40e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 565671710 1903 CEADQFSCiYTLQCVPLSGKCDGHEDCIDGSDEMDC 1938
Cdd:cd00112     1 CPPNEFRC-ANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1947-1981 5.73e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.59  E-value: 5.73e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 565671710 1947 CSNMEFPCSTDECIPSLLLCDGVPDCHFNEDELIC 1981
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1947-1978 2.28e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 45.70  E-value: 2.28e-06
                            10        20        30
                    ....*....|....*....|....*....|..
gi 565671710   1947 CSNMEFPCSTDECIPSLLLCDGVPDCHFNEDE 1978
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1050-1082 5.31e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 44.93  E-value: 5.31e-06
                            10        20        30
                    ....*....|....*....|....*....|...
gi 565671710   1050 CTDNEFICRsDGHCIEKMQKCDFKYDCPDKSDE 1082
Cdd:smart00192    2 CPPGEFQCD-NGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
434-465 6.86e-06

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 44.55  E-value: 6.86e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 565671710   434 CSADEFPCTSGQCIAKESVCDSRQDCSDESDE 465
Cdd:pfam00057    3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1684-1716 7.94e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 44.16  E-value: 7.94e-06
                            10        20        30
                    ....*....|....*....|....*....|...
gi 565671710   1684 CPEiTDFLCRDKKCIASHLLCDYKPDCSDRSDE 1716
Cdd:smart00192    2 CPP-GEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1901-1938 1.35e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 43.78  E-value: 1.35e-05
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 565671710  1901 SPCEADQFSCIYTlQCVPLSGKCDGHEDCIDGSDEMDC 1938
Cdd:pfam00057    1 STCSPNEFQCGSG-ECIPRSWVCDGDPDCGDGSDEENC 37
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1686-1719 2.23e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 43.01  E-value: 2.23e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 565671710  1686 EITDFLCRDKKCIASHLLCDYKPDCSDRSDEAHC 1719
Cdd:pfam00057    4 SPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1483-1517 4.59e-05

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 42.19  E-value: 4.59e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 565671710 1483 CPLGYRECHNGKCYRLEQSCNFVDNCGDNTDENEC 1517
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1947-1981 7.45e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 41.85  E-value: 7.45e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 565671710  1947 CSNMEFPCSTDECIPSLLLCDGVPDCHFNEDELIC 1981
Cdd:pfam00057    3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1903-1935 8.53e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 41.46  E-value: 8.53e-05
                            10        20        30
                    ....*....|....*....|....*....|...
gi 565671710   1903 CEADQFSCIYTlQCVPLSGKCDGHEDCIDGSDE 1935
Cdd:smart00192    2 CPPGEFQCDNG-RCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
38-67 2.08e-04

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 40.27  E-value: 2.08e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 565671710   38 FQCDNGVSLPPDSICDFTDQCGDSSDERHC 67
Cdd:cd00112     6 FRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
EGF pfam00008
EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very ...
2025-2055 5.88e-04

EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains.


Pssm-ID: 394967  Cd Length: 31  Bit Score: 38.90  E-value: 5.88e-04
                           10        20        30
                   ....*....|....*....|....*....|.
gi 565671710  2025 CPLNYCRNGGTCVVEKNGPMCRCRQGWKGNR 2055
Cdd:pfam00008    1 CAPNPCSNGGTCVDTPGGYTCICPEGYTGKR 31
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1262-1295 6.54e-04

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 39.15  E-value: 6.54e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 565671710  1262 RKCTDHEFMCANKHCIAKDKLCDFVNDCADNSDE 1295
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
2024-2056 6.74e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 39.16  E-value: 6.74e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 565671710 2024 EC-PLNYCRNGGTCVVEKNGPMCRCRQGWKGNRC 2056
Cdd:cd00054     4 ECaSGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37
hEGF pfam12661
Human growth factor-like EGF; hEGF, or human growth factor-like EGF, domains have six ...
2030-2051 9.14e-04

Human growth factor-like EGF; hEGF, or human growth factor-like EGF, domains have six conserved residues disulfide-bonded into the characteriztic 'ababcc' pattern. They are involved in growth and proliferation of cells, in proteins of the Notch/Delta pathway, neurogulin and selectins. hEGFs are also found in mosaic proteins with four-disulfide laminin EGFs such as aggrecan and perlecan. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal Cys residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In hEGFs the C-terminal thiol resides in the beta-turn, resulting in shorter loop-lengths between the Cys residues of disulfide 'c', typically C[8-9]XC. These shorter loop-lengths are also typical of the four-disulfide EGF domains, laminin ad integrin. Tandem hEGF domains have six linking residues between terminal cysteines of adjacent domains. hEGF domains may or may not bind calcium in the linker region. hEGF domains with the consensus motif CXD4X[F,Y]XCXC are hydroxylated exclusively in the Asp residue.


Pssm-ID: 463660  Cd Length: 22  Bit Score: 38.47  E-value: 9.14e-04
                           10        20
                   ....*....|....*....|..
gi 565671710  2030 CRNGGTCVVEKNGPMCRCRQGW 2051
Cdd:pfam12661    1 CQNGGTCVDGVNGYKCQCPPGY 22
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
827-859 1.02e-03

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 38.34  E-value: 1.02e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 565671710  827 DHFWCRHTRaCIEKLRLCDLVDDCGDRTDEVNC 859
Cdd:cd00112     4 NEFRCANGR-CIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1483-1514 1.11e-03

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 38.38  E-value: 1.11e-03
                            10        20        30
                    ....*....|....*....|....*....|..
gi 565671710   1483 CPLGYRECHNGKCYRLEQSCNFVDNCGDNTDE 1514
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1050-1085 3.77e-03

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 36.84  E-value: 3.77e-03
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 565671710  1050 CTDNEFICRSdGHCIEKMQKCDFKYDCPDKSDEASC 1085
Cdd:pfam00057    3 CSPNEFQCGS-GECIPRSWVCDGDPDCGDGSDEENC 37
EGF cd00053
Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large ...
2024-2055 4.36e-03

Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.


Pssm-ID: 238010  Cd Length: 36  Bit Score: 36.69  E-value: 4.36e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 565671710 2024 EC-PLNYCRNGGTCVVEKNGPMCRCRQGWKGNR 2055
Cdd:cd00053     1 ECaASNPCSNGGTCVNTPGSYRCVCPPGYTGDR 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
38-64 5.29e-03

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 36.46  E-value: 5.29e-03
                            10        20
                    ....*....|....*....|....*..
gi 565671710     38 FQCDNGVSLPPDSICDFTDQCGDSSDE 64
Cdd:smart00192    7 FQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1986-2022 9.47e-03

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 35.65  E-value: 9.47e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 565671710 1986 CSNGALVCASSnSCIPAHQRCDGFADCMDfQLDESSC 2022
Cdd:cd00112     1 CPPNEFRCANG-RCIPSSWVCDGEDDCGD-GSDEENC 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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