NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|237858561|ref|NP_001153831|]
View 

UPF0739 protein C1orf74 homolog [Mus musculus]

Protein Classification

DUF4504 domain-containing protein( domain architecture ID 10633133)

DUF4504 domain-containing protein similar to Homo sapiens UPF0739 protein C1orf74

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
DUF4504 pfam14953
Domain of unknown function (DUF4504); This family of proteins is found in eukaryotes. Proteins ...
15-263 1.34e-114

Domain of unknown function (DUF4504); This family of proteins is found in eukaryotes. Proteins in this family are typically between 253 and 329 amino acids in length. There are two conserved sequence motifs: LLGYP and SFS.


:

Pssm-ID: 464399  Cd Length: 255  Bit Score: 329.24  E-value: 1.34e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858561   15 QTLGMGKRKCPPRATCLHLAGEVLAVARGLKPAVLYDCNSAGVLALQSYLEELQGLGFLEPGLHILEIGENNFIVSPEYA 94
Cdd:pfam14953   1 RNCLSRKRKRLSPSSKLRLAADVLAVDTGLKPAVLYDYNGAGMPQLQEYLCSLQELSLLFGPLHVMVIEDMIYLINVEGL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858561   95 CQHLEQTLLG-TVAFVDVSRSQPHPSVRSVD--QLPDLKSLIADVITRFRGLK-KDVSQGVSYTRLHSSDWNLCTVFGIL 170
Cdd:pfam14953  81 ASHLESLLSEnQLAFVDVESSPPKPIICSEEssQVMQLKSIQALFLGHFPLDSsKTSSEIDLSSGLQSSDWNLCTLFGWL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858561  171 LGYPVSYTFDLNREDDNCLTMTPLRVFTARISW--LPGQPSILLYSFSVPESLFPALKNFLSAWEKELRTRFRAQNAFAD 248
Cdd:pfam14953 161 LGYPVVYLFDQEHSFENCLSMTPLRVFTILVSRnrISNKHPEELYSFSVPEDLSSAMQGSLEPWAKSLQERFNAQNVWAD 240
                         250
                  ....*....|....*
gi 237858561  249 LSISSEVVTLPAVAL 263
Cdd:pfam14953 241 LSISVETVTLPSVAL 255
 
Name Accession Description Interval E-value
DUF4504 pfam14953
Domain of unknown function (DUF4504); This family of proteins is found in eukaryotes. Proteins ...
15-263 1.34e-114

Domain of unknown function (DUF4504); This family of proteins is found in eukaryotes. Proteins in this family are typically between 253 and 329 amino acids in length. There are two conserved sequence motifs: LLGYP and SFS.


Pssm-ID: 464399  Cd Length: 255  Bit Score: 329.24  E-value: 1.34e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858561   15 QTLGMGKRKCPPRATCLHLAGEVLAVARGLKPAVLYDCNSAGVLALQSYLEELQGLGFLEPGLHILEIGENNFIVSPEYA 94
Cdd:pfam14953   1 RNCLSRKRKRLSPSSKLRLAADVLAVDTGLKPAVLYDYNGAGMPQLQEYLCSLQELSLLFGPLHVMVIEDMIYLINVEGL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858561   95 CQHLEQTLLG-TVAFVDVSRSQPHPSVRSVD--QLPDLKSLIADVITRFRGLK-KDVSQGVSYTRLHSSDWNLCTVFGIL 170
Cdd:pfam14953  81 ASHLESLLSEnQLAFVDVESSPPKPIICSEEssQVMQLKSIQALFLGHFPLDSsKTSSEIDLSSGLQSSDWNLCTLFGWL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858561  171 LGYPVSYTFDLNREDDNCLTMTPLRVFTARISW--LPGQPSILLYSFSVPESLFPALKNFLSAWEKELRTRFRAQNAFAD 248
Cdd:pfam14953 161 LGYPVVYLFDQEHSFENCLSMTPLRVFTILVSRnrISNKHPEELYSFSVPEDLSSAMQGSLEPWAKSLQERFNAQNVWAD 240
                         250
                  ....*....|....*
gi 237858561  249 LSISSEVVTLPAVAL 263
Cdd:pfam14953 241 LSISVETVTLPSVAL 255
 
Name Accession Description Interval E-value
DUF4504 pfam14953
Domain of unknown function (DUF4504); This family of proteins is found in eukaryotes. Proteins ...
15-263 1.34e-114

Domain of unknown function (DUF4504); This family of proteins is found in eukaryotes. Proteins in this family are typically between 253 and 329 amino acids in length. There are two conserved sequence motifs: LLGYP and SFS.


Pssm-ID: 464399  Cd Length: 255  Bit Score: 329.24  E-value: 1.34e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858561   15 QTLGMGKRKCPPRATCLHLAGEVLAVARGLKPAVLYDCNSAGVLALQSYLEELQGLGFLEPGLHILEIGENNFIVSPEYA 94
Cdd:pfam14953   1 RNCLSRKRKRLSPSSKLRLAADVLAVDTGLKPAVLYDYNGAGMPQLQEYLCSLQELSLLFGPLHVMVIEDMIYLINVEGL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858561   95 CQHLEQTLLG-TVAFVDVSRSQPHPSVRSVD--QLPDLKSLIADVITRFRGLK-KDVSQGVSYTRLHSSDWNLCTVFGIL 170
Cdd:pfam14953  81 ASHLESLLSEnQLAFVDVESSPPKPIICSEEssQVMQLKSIQALFLGHFPLDSsKTSSEIDLSSGLQSSDWNLCTLFGWL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858561  171 LGYPVSYTFDLNREDDNCLTMTPLRVFTARISW--LPGQPSILLYSFSVPESLFPALKNFLSAWEKELRTRFRAQNAFAD 248
Cdd:pfam14953 161 LGYPVVYLFDQEHSFENCLSMTPLRVFTILVSRnrISNKHPEELYSFSVPEDLSSAMQGSLEPWAKSLQERFNAQNVWAD 240
                         250
                  ....*....|....*
gi 237858561  249 LSISSEVVTLPAVAL 263
Cdd:pfam14953 241 LSISVETVTLPSVAL 255
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH