|
Name |
Accession |
Description |
Interval |
E-value |
| PHA03247 super family |
cl33720 |
large tegument protein UL36; Provisional |
46-418 |
2.93e-09 |
|
large tegument protein UL36; Provisional
The actual alignment was detected with superfamily member PHA03247:
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 61.11 E-value: 2.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 46 PPQASLSIPVSRGLPQQSSPQQLLSLQGLHSTSLLNGPMLQRALLLQQLQGLDQFAMPPATYDGASLTMPTATLGNLRAF 125
Cdd:PHA03247 2619 PDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSL 2698
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 126 NVTAPSLAAPSLTPPQMVTPNLQQFFPQATRQSL-------LGPPPVGVPINPSQLNHSGRnTQKQARTPSSTTPNRKDS 198
Cdd:PHA03247 2699 ADPPPPPPTPEPAPHALVSATPLPPGPAAARQASpalpaapAPPAVPAGPATPGGPARPAR-PPTTAGPPAPAPPAAPAA 2777
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 199 SSQTVPLEDREDPTEGSEEATELQMDTCEDQDSLVGPDSMLSEPQVPE-PEPFETLEPPAKRCRSSEESTEKGPTGQPQA 277
Cdd:PHA03247 2778 GPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAgPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVA 2857
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 278 RVQPQTQMTAPKQTQTPDRLPEPPEVQMLPRIQPQAlqiQTQPkllrQAQTQTSPEHLAPQQDQVPTQAQSQEQTSEKTQ 357
Cdd:PHA03247 2858 PGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSR---STES----FALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQ 2930
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 357527437 358 DQPQTWPQGSVPPPEQAsGPACATEPQLSSHAAEAGSDPDKALPEPVSAQSSEDRSREASA 418
Cdd:PHA03247 2931 PPPPPPPRPQPPLAPTT-DPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPA 2990
|
|
| zf-C2H2_jaz |
pfam12171 |
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ... |
581-605 |
1.67e-05 |
|
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.
:
Pssm-ID: 432381 [Multi-domain] Cd Length: 27 Bit Score: 42.16 E-value: 1.67e-05
|
| ZnF_U1 |
smart00451 |
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ... |
697-730 |
1.55e-03 |
|
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
:
Pssm-ID: 197732 [Multi-domain] Cd Length: 35 Bit Score: 36.85 E-value: 1.55e-03
10 20 30
....*....|....*....|....*....|....
gi 357527437 697 GYVCQICHKFYDSNSELRlSHCKSLAHFENLQKY 730
Cdd:smart00451 3 GFYCKLCNVTFTDEISVE-AHLKGKKHKKNVKKR 35
|
|
| GIY-YIG_SF super family |
cl15257 |
GIY-YIG nuclease domain superfamily; The GIY-YIG nuclease domain superfamily includes a large ... |
550-617 |
2.67e-03 |
|
GIY-YIG nuclease domain superfamily; The GIY-YIG nuclease domain superfamily includes a large and diverse group of proteins involved in many cellular processes, such as class I homing GIY-YIG family endonucleases, prokaryotic nucleotide excision repair proteins UvrC and Cho, type II restriction enzymes, the endonuclease/reverse transcriptase of eukaryotic retrotransposable elements, and a family of eukaryotic enzymes that repair stalled replication forks. All of these members contain a conserved GIY-YIG nuclease domain that may serve as a scaffold for the coordination of a divalent metal ion required for catalysis of the phosphodiester bond cleavage. By combining with different specificity, targeting, or other domains, the GIY-YIG nucleases may perform different functions.
The actual alignment was detected with superfamily member cd10442:
Pssm-ID: 472790 Cd Length: 92 Bit Score: 37.73 E-value: 2.67e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 550 WCNTCQVYYVGDLIQ--HRRTQEHKVAKQSlrpfcticNRYFKTPrkFVEHVKSQGHKDKAQELKTLEKE 617
Cdd:cd10442 6 PCPKCGLVYIGETKRplRERMKEHRRAIRL--------SGTKKSA--VAKHFNEEGHSIDSDRVRILDKE 65
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
46-418 |
2.93e-09 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 61.11 E-value: 2.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 46 PPQASLSIPVSRGLPQQSSPQQLLSLQGLHSTSLLNGPMLQRALLLQQLQGLDQFAMPPATYDGASLTMPTATLGNLRAF 125
Cdd:PHA03247 2619 PDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSL 2698
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 126 NVTAPSLAAPSLTPPQMVTPNLQQFFPQATRQSL-------LGPPPVGVPINPSQLNHSGRnTQKQARTPSSTTPNRKDS 198
Cdd:PHA03247 2699 ADPPPPPPTPEPAPHALVSATPLPPGPAAARQASpalpaapAPPAVPAGPATPGGPARPAR-PPTTAGPPAPAPPAAPAA 2777
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 199 SSQTVPLEDREDPTEGSEEATELQMDTCEDQDSLVGPDSMLSEPQVPE-PEPFETLEPPAKRCRSSEESTEKGPTGQPQA 277
Cdd:PHA03247 2778 GPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAgPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVA 2857
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 278 RVQPQTQMTAPKQTQTPDRLPEPPEVQMLPRIQPQAlqiQTQPkllrQAQTQTSPEHLAPQQDQVPTQAQSQEQTSEKTQ 357
Cdd:PHA03247 2858 PGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSR---STES----FALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQ 2930
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 357527437 358 DQPQTWPQGSVPPPEQAsGPACATEPQLSSHAAEAGSDPDKALPEPVSAQSSEDRSREASA 418
Cdd:PHA03247 2931 PPPPPPPRPQPPLAPTT-DPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPA 2990
|
|
| zf-C2H2_jaz |
pfam12171 |
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ... |
581-605 |
1.67e-05 |
|
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.
Pssm-ID: 432381 [Multi-domain] Cd Length: 27 Bit Score: 42.16 E-value: 1.67e-05
|
| Agg_substance |
NF033875 |
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ... |
127-355 |
1.31e-04 |
|
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.
Pssm-ID: 411439 [Multi-domain] Cd Length: 1306 Bit Score: 45.86 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 127 VTAPSLAAPSLTPPQMVTPNLQQffpqatrqSLLGPPPVGVPINPSQLN-HSGRNTQKQARTPSSTTpnRKDSSSQTVPL 205
Cdd:NF033875 21 VVAPILFLGVLGVVGLATDNVQA--------AELDTQPGTTTVQPDNPDpQSGSETPKTAVSEEATV--QKDTTSQPTKV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 206 EDREDPTEGSEEATELQMDTCEDQDSLVGPDSMLSEPQVPEPEpfETLEPPAKrcrsseestekgPTGQPQARVQPQTQM 285
Cdd:NF033875 91 EEVASEKNGAEQSSATPNDTTNAQQPTVGAEKSAQEQPVVSPE--TTNEPLGQ------------PTEVAPAENEANKST 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 286 TAPKQTQTPDRLPEPPEVQMLPRI-----------------------QPQALQIQTQPKLLRQ-AQTQTSPEHLAPQQDQ 341
Cdd:NF033875 157 SIPKEFETPDVDKAVDEAKKDPNItvvekpaedlgnvsskdlaakekEVDQLQKEQAKKIAQQaAELKAKNEKIAKENAE 236
|
250
....*....|....
gi 357527437 342 VPTQAQSQEQTSEK 355
Cdd:NF033875 237 IAAKNKAEKERYEK 250
|
|
| ZnF_U1 |
smart00451 |
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ... |
697-730 |
1.55e-03 |
|
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Pssm-ID: 197732 [Multi-domain] Cd Length: 35 Bit Score: 36.85 E-value: 1.55e-03
10 20 30
....*....|....*....|....*....|....
gi 357527437 697 GYVCQICHKFYDSNSELRlSHCKSLAHFENLQKY 730
Cdd:smart00451 3 GFYCKLCNVTFTDEISVE-AHLKGKKHKKNVKKR 35
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
156-412 |
2.62e-03 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 41.17 E-value: 2.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 156 RQSLLGPPPVGVPINPSQLNHSGRNTQKQARTPS-STTPNR----KDSSSQTVPledredptegseeatELQMDTcedqd 230
Cdd:pfam09770 101 RFNRQQPAARAAQSSAQPPASSLPQYQYASQQSQqPSKPVRtgyeKYKEPEPIP---------------DLQVDA----- 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 231 SL--VGPDSMLSEPQVPEPEPFETLEPPAKRCRSSEESTEKGPTGQPQARVQPQT--------QMTAPKQTQTPDRLPEP 300
Cdd:pfam09770 161 SLwgVAPKKAAAPAPAPQPAAQPASLPAPSRKMMSLEEVEAAMRAQAKKPAQQPApapaqppaAPPAQQAQQQQQFPPQI 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 301 PEVQMLPRIQPQALQIQTQPKLLRQAQTQTSPEhLAPQQDQVPTQAQSQEQTSEKTQDQP---------QTWPQGSVPPP 371
Cdd:pfam09770 241 QQQQQPQQQPQQPQQHPGQGHPVTILQRPQSPQ-PDPAQPSIQPQAQQFHQQPPPVPVQPtqilqnpnrLSAARVGYPQN 319
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 357527437 372 EQASGPACATEPQLSSHAAEAGSDPDKALPEPVSAQSSEDR 412
Cdd:pfam09770 320 PQPGVQPAPAHQAHRQQGSFGRQAPIITHPQQLAQLSEEEK 360
|
|
| GIY-YIG_PLEs |
cd10442 |
Catalytic GIY-YIG endonuclease domain of penelope-like elements and similar proteins; This ... |
550-617 |
2.67e-03 |
|
Catalytic GIY-YIG endonuclease domain of penelope-like elements and similar proteins; This model corresponds to the EN domain of PLEs that contains catalytic module of the GIY-YIG endonucleases of group I bacterial/organellar introns, as well as bacterial UvrC DNA repair proteins. It can cleave DNA with low nucleotide sequence specificity. However, the PLEs EN domain is distinct from other GIY-YIG endonucleases by the presence of a well-conserved CCHH motif (CX(2-7)CX(33-39)HX(3-5)H, X can be any residue). The role of the CCHH motif has not yet been identified. Penelope-like elements (PLEs) represent a novel class of eukaryotic retroelements, which do not belong to either long terminal repeat (LTR) retrotransposons or non-LTR retrotransposons (often called LINEs), but instead form a sister clade to telomerase reverse transcriptases (TERTs), highly specialized non-mobile reverse transcriptases (RTs) which are responsible for the addition of telomeric repeats to the ends of eukaryotic chromosomes. The single open reading frame (ORF) encoded by PLE consists of two principal domains, RT domain and endonuclease (EN) domain, jointed by a linker region of variable length. Both of these two domains are functionally active.
Pssm-ID: 198389 Cd Length: 92 Bit Score: 37.73 E-value: 2.67e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 550 WCNTCQVYYVGDLIQ--HRRTQEHKVAKQSlrpfcticNRYFKTPrkFVEHVKSQGHKDKAQELKTLEKE 617
Cdd:cd10442 6 PCPKCGLVYIGETKRplRERMKEHRRAIRL--------SGTKKSA--VAKHFNEEGHSIDSDRVRILDKE 65
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
46-418 |
2.93e-09 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 61.11 E-value: 2.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 46 PPQASLSIPVSRGLPQQSSPQQLLSLQGLHSTSLLNGPMLQRALLLQQLQGLDQFAMPPATYDGASLTMPTATLGNLRAF 125
Cdd:PHA03247 2619 PDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSL 2698
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 126 NVTAPSLAAPSLTPPQMVTPNLQQFFPQATRQSL-------LGPPPVGVPINPSQLNHSGRnTQKQARTPSSTTPNRKDS 198
Cdd:PHA03247 2699 ADPPPPPPTPEPAPHALVSATPLPPGPAAARQASpalpaapAPPAVPAGPATPGGPARPAR-PPTTAGPPAPAPPAAPAA 2777
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 199 SSQTVPLEDREDPTEGSEEATELQMDTCEDQDSLVGPDSMLSEPQVPE-PEPFETLEPPAKRCRSSEESTEKGPTGQPQA 277
Cdd:PHA03247 2778 GPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAgPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVA 2857
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 278 RVQPQTQMTAPKQTQTPDRLPEPPEVQMLPRIQPQAlqiQTQPkllrQAQTQTSPEHLAPQQDQVPTQAQSQEQTSEKTQ 357
Cdd:PHA03247 2858 PGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSR---STES----FALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQ 2930
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 357527437 358 DQPQTWPQGSVPPPEQAsGPACATEPQLSSHAAEAGSDPDKALPEPVSAQSSEDRSREASA 418
Cdd:PHA03247 2931 PPPPPPPRPQPPLAPTT-DPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPA 2990
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
47-424 |
2.28e-08 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 58.03 E-value: 2.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 47 PQASLSIPVSRGLPQQSSPQQLLSlqglhSTSLLNGPMLQRALLLQQLQGLDQFAMPPATYDGASLTMPTATLGNLRAFN 126
Cdd:PHA03247 2694 SLTSLADPPPPPPTPEPAPHALVS-----ATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPA 2768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 127 VTAPslAAPSLTPPQMVTPNLQQFFPQATRQSLLGPPPVGVPINPSQLNHSGRNTQKQART-PSSTTPNRKDSSSQTVPL 205
Cdd:PHA03247 2769 PAPP--AAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPlPPPTSAQPTAPPPPPGPP 2846
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 206 EDREdPTEGSEEATelqmdtcedqdslvGPDSMLSEPQVPEPEPFETLEPPAKRCRSSEESTEKGPTGQPQARVQPQTQM 285
Cdd:PHA03247 2847 PPSL-PLGGSVAPG--------------GDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQP 2911
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 286 TAPKQTQTPDRLPEPPEVQMLPRIQPQAlQIQTQPKLLRQAQTQTSPE-------HLAPQQDQVPTQAQSQEQTSEKTqd 358
Cdd:PHA03247 2912 QAPPPPQPQPQPPPPPQPQPPPPPPPRP-QPPLAPTTDPAGAGEPSGAvpqpwlgALVPGRVAVPRFRVPQPAPSREA-- 2988
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 357527437 359 qpqtwPQGSVPPPEQASGPAcatepqLSSHAAEAGSDPDKAlPEPVS-----------AQSSEDRSREASAGGLDLG 424
Cdd:PHA03247 2989 -----PASSTPPLTGHSLSR------VSSWASSLALHEETD-PPPVSlkqtlwppddtEDSDADSLFDSDSERSDLE 3053
|
|
| zf-C2H2_jaz |
pfam12171 |
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ... |
581-605 |
1.67e-05 |
|
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.
Pssm-ID: 432381 [Multi-domain] Cd Length: 27 Bit Score: 42.16 E-value: 1.67e-05
|
| PRK10927 |
PRK10927 |
cell division protein FtsN; |
245-412 |
1.88e-05 |
|
cell division protein FtsN;
Pssm-ID: 236797 [Multi-domain] Cd Length: 319 Bit Score: 47.37 E-value: 1.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 245 PEPEP----FETLEPPAKRCRSSEESTEKGPTGQPQARVQPQTQMTAPKQT---QTPDRLPEPPEVQMLPRIQPQALQIQ 317
Cdd:PRK10927 77 PKPEErwryIKELESRQPGVRAPTEPSAGGEVKTPEQLTPEQRQLLEQMQAdmrQQPTQLVEVPWNEQTPEQRQQTLQRQ 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 318 TQpkllRQAQTQTSPEHLAPQQDQVPTQAQSQEQTSEKTQDQPQTWPQGSVPPPEQ--ASGPACATEPQLSSHAAEAGSD 395
Cdd:PRK10927 157 RQ----AQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQdlLQTPAHTTAQSKPQQAAPVTRA 232
|
170
....*....|....*..
gi 357527437 396 PDKalPEPVSAQSSEDR 412
Cdd:PRK10927 233 ADA--PKPTAEKKDERR 247
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
139-406 |
2.48e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 48.40 E-value: 2.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 139 PPQMVTPNLQqffPQATRQSLLGPPPVGVPINPSqlnhsgrnTQKQARTPSSTTpnrkDSSSQTVPLEDREDPtEGSEEA 218
Cdd:PHA03247 2551 PPPPLPPAAP---PAAPDRSVPPPRPAPRPSEPA--------VTSRARRPDAPP----QSARPRAPVDDRGDP-RGPAPP 2614
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 219 TELQMDTCEDQDSLVGPDSMLSEPQVPEPEPFETLEPPAK-----RCRSSEESTEKGPTGQPQARVQPQTQMTAPKQTQT 293
Cdd:PHA03247 2615 SPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDdpapgRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGS 2694
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 294 PDRLPEPPEVQMLPRIQPQALQIQTQPKLLRQAQTQTSPE-HLAPQQDQVPTQAQSQEQTSEKTQDQPQTWPQGSVPPPE 372
Cdd:PHA03247 2695 LTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPAlPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAA 2774
|
250 260 270
....*....|....*....|....*....|....*
gi 357527437 373 QASGPA-CATEPQLSSHAAEAGSDPDKALPEPVSA 406
Cdd:PHA03247 2775 PAAGPPrRLTRPAVASLSESRESLPSPWDPADPPA 2809
|
|
| Agg_substance |
NF033875 |
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ... |
127-355 |
1.31e-04 |
|
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.
Pssm-ID: 411439 [Multi-domain] Cd Length: 1306 Bit Score: 45.86 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 127 VTAPSLAAPSLTPPQMVTPNLQQffpqatrqSLLGPPPVGVPINPSQLN-HSGRNTQKQARTPSSTTpnRKDSSSQTVPL 205
Cdd:NF033875 21 VVAPILFLGVLGVVGLATDNVQA--------AELDTQPGTTTVQPDNPDpQSGSETPKTAVSEEATV--QKDTTSQPTKV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 206 EDREDPTEGSEEATELQMDTCEDQDSLVGPDSMLSEPQVPEPEpfETLEPPAKrcrsseestekgPTGQPQARVQPQTQM 285
Cdd:NF033875 91 EEVASEKNGAEQSSATPNDTTNAQQPTVGAEKSAQEQPVVSPE--TTNEPLGQ------------PTEVAPAENEANKST 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 286 TAPKQTQTPDRLPEPPEVQMLPRI-----------------------QPQALQIQTQPKLLRQ-AQTQTSPEHLAPQQDQ 341
Cdd:NF033875 157 SIPKEFETPDVDKAVDEAKKDPNItvvekpaedlgnvsskdlaakekEVDQLQKEQAKKIAQQaAELKAKNEKIAKENAE 236
|
250
....*....|....
gi 357527437 342 VPTQAQSQEQTSEK 355
Cdd:NF033875 237 IAAKNKAEKERYEK 250
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
234-383 |
5.26e-04 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 43.92 E-value: 5.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 234 GPDSMLSEPQV-PEPEPFETLEPPAKrcrsseestekgpTGQPQARVQPQTQMTAPKQTQTPDRLPEPPEVQMLPRIQPQ 312
Cdd:PRK10263 739 GPHEPLFTPIVePVQQPQQPVAPQQQ-------------YQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQ 805
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 357527437 313 ALQIQTQPKLLRQAQTQTSPEHLAPQQDQVPTQAQSQEQ-----TSEKTQDQPQTWPQGSVPPPEQASGPACATEP 383
Cdd:PRK10263 806 QPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTllhplLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEP 881
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
231-372 |
5.39e-04 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 43.54 E-value: 5.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 231 SLVGPDSMLSEPQV---PEPEPfETLEP-----PAKRCRSSEESTEKGPTGQPQARVQPQTQMTAPKQTQTPDRLPEPPE 302
Cdd:PRK10263 345 PVASVDVPPAQPTVawqPVPGP-QTGEPviapaPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAP 423
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 303 VQMLPRIQPQALQIQTQPKLLRQAQTQTSPEHLAPQQDQVPTQAQSQEQTSEKTQDQPQTWPQGSVPPPE 372
Cdd:PRK10263 424 APEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPE 493
|
|
| ZnF_U1 |
smart00451 |
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ... |
697-730 |
1.55e-03 |
|
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Pssm-ID: 197732 [Multi-domain] Cd Length: 35 Bit Score: 36.85 E-value: 1.55e-03
10 20 30
....*....|....*....|....*....|....
gi 357527437 697 GYVCQICHKFYDSNSELRlSHCKSLAHFENLQKY 730
Cdd:smart00451 3 GFYCKLCNVTFTDEISVE-AHLKGKKHKKNVKKR 35
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
271-410 |
2.04e-03 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 41.99 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 271 PTGQPQARVQPqtqmtAP-KQTQTPDRLPEPPEVQMlpriQPQALQIQTQPKLLRQAQTQTSPEHLAPQQDQVPtQAQSQ 349
Cdd:PRK10263 352 PPAQPTVAWQP-----VPgPQTGEPVIAPAPEGYPQ----QSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPA-QQPYY 421
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 357527437 350 EQTSEKTQDQPQTWPQGSVPPPEQASGPacatEPQLSSHAAEAGSDPDKALPEPVSAQSSE 410
Cdd:PRK10263 422 APAPEQPAQQPYYAPAPEQPVAGNAWQA----EEQQSTFAPQSTYQTEQTYQQPAAQEPLY 478
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
156-412 |
2.62e-03 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 41.17 E-value: 2.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 156 RQSLLGPPPVGVPINPSQLNHSGRNTQKQARTPS-STTPNR----KDSSSQTVPledredptegseeatELQMDTcedqd 230
Cdd:pfam09770 101 RFNRQQPAARAAQSSAQPPASSLPQYQYASQQSQqPSKPVRtgyeKYKEPEPIP---------------DLQVDA----- 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 231 SL--VGPDSMLSEPQVPEPEPFETLEPPAKRCRSSEESTEKGPTGQPQARVQPQT--------QMTAPKQTQTPDRLPEP 300
Cdd:pfam09770 161 SLwgVAPKKAAAPAPAPQPAAQPASLPAPSRKMMSLEEVEAAMRAQAKKPAQQPApapaqppaAPPAQQAQQQQQFPPQI 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 301 PEVQMLPRIQPQALQIQTQPKLLRQAQTQTSPEhLAPQQDQVPTQAQSQEQTSEKTQDQP---------QTWPQGSVPPP 371
Cdd:pfam09770 241 QQQQQPQQQPQQPQQHPGQGHPVTILQRPQSPQ-PDPAQPSIQPQAQQFHQQPPPVPVQPtqilqnpnrLSAARVGYPQN 319
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 357527437 372 EQASGPACATEPQLSSHAAEAGSDPDKALPEPVSAQSSEDR 412
Cdd:pfam09770 320 PQPGVQPAPAHQAHRQQGSFGRQAPIITHPQQLAQLSEEEK 360
|
|
| GIY-YIG_PLEs |
cd10442 |
Catalytic GIY-YIG endonuclease domain of penelope-like elements and similar proteins; This ... |
550-617 |
2.67e-03 |
|
Catalytic GIY-YIG endonuclease domain of penelope-like elements and similar proteins; This model corresponds to the EN domain of PLEs that contains catalytic module of the GIY-YIG endonucleases of group I bacterial/organellar introns, as well as bacterial UvrC DNA repair proteins. It can cleave DNA with low nucleotide sequence specificity. However, the PLEs EN domain is distinct from other GIY-YIG endonucleases by the presence of a well-conserved CCHH motif (CX(2-7)CX(33-39)HX(3-5)H, X can be any residue). The role of the CCHH motif has not yet been identified. Penelope-like elements (PLEs) represent a novel class of eukaryotic retroelements, which do not belong to either long terminal repeat (LTR) retrotransposons or non-LTR retrotransposons (often called LINEs), but instead form a sister clade to telomerase reverse transcriptases (TERTs), highly specialized non-mobile reverse transcriptases (RTs) which are responsible for the addition of telomeric repeats to the ends of eukaryotic chromosomes. The single open reading frame (ORF) encoded by PLE consists of two principal domains, RT domain and endonuclease (EN) domain, jointed by a linker region of variable length. Both of these two domains are functionally active.
Pssm-ID: 198389 Cd Length: 92 Bit Score: 37.73 E-value: 2.67e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 550 WCNTCQVYYVGDLIQ--HRRTQEHKVAKQSlrpfcticNRYFKTPrkFVEHVKSQGHKDKAQELKTLEKE 617
Cdd:cd10442 6 PCPKCGLVYIGETKRplRERMKEHRRAIRL--------SGTKKSA--VAKHFNEEGHSIDSDRVRILDKE 65
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
301-412 |
2.82e-03 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 41.22 E-value: 2.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 301 PEVQMLPRIQPQALQIQTQPKLLRQAQTQTSPEHLAPQQDQVPTQAQSQEQTSEKTQDQPQTwPQGSVPPPEQASGPaca 380
Cdd:PRK10263 751 PVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVA-PQPQYQQPQQPVAP--- 826
|
90 100 110
....*....|....*....|....*....|..
gi 357527437 381 tEPQLSSHAAEAGSDPDKALPEPVSAQSSEDR 412
Cdd:PRK10263 827 -QPQYQQPQQPVAPQPQDTLLHPLLMRNGDSR 857
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
111-489 |
3.23e-03 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 41.29 E-value: 3.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 111 SLTMPTATLGNLRAFNVTAPSLAAPSLTPPQMVTPnlqQFFPQATRQSLLGPPPVGVPINPSQLNHSGrntqkqartPSS 190
Cdd:pfam03154 229 TLIQQTPTLHPQRLPSPHPPLQPMTQPPPPSQVSP---QPLPQPSLHGQMPPMPHSLQTGPSHMQHPV---------PPQ 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 191 TTPNRKDSSSQTVPLEdredPTEGSEEATELQMDTCEDQDSLVGPDSMLSEPQVPEPEPFETLEPPAkrcrsseeSTEKG 270
Cdd:pfam03154 297 PFPLTPQSSQSQVPPG----PSPAAPGQSQQRIHTPPSQSQLQSQQPPREQPLPPAPLSMPHIKPPP--------TTPIP 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 271 PTGQPQARVQPqTQMTAPKQTQTPDRLPEPPEVQMLPRIQPQALQIQTQPKLLRQAQTQTSPEhlAPQQDQVPTQAQSQE 350
Cdd:pfam03154 365 QLPNPQSHKHP-PHLSGPSPFQMNSNLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQQLPP--PPAQPPVLTQSQSLP 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 351 qtsektqdqpqtwPQGSVPPPEQASGPAcATEPQLSSHAAEAGSDPDKALPE--PVSAQSSEDRSREASAGGLDLGecek 428
Cdd:pfam03154 442 -------------PPAASHPPTSGLHQV-PSQSPFPQHPFVPGGPPPITPPSgpPTSTSSAMPGIQPPSSASVSSS---- 503
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 357527437 429 ragemlGMWGAGSSLKVTILQSSNSRAFNTTPLTSGPRPGDSTSATPAIASTPS--KQSLQFF 489
Cdd:pfam03154 504 ------GPVPAAVSCPLPPVQIKEEALDEAEEPESPPPPPRSPSPEPTVVNTPShaSQSARFY 560
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
234-422 |
3.30e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.12 E-value: 3.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 234 GPDSMLSEPQVPEPEPFETLEPPAKRCR------SSEESTEKGPTGQPQARVQPQTQMTAPKQT---QTPDRLPEPPEVQ 304
Cdd:PRK07764 602 APASSGPPEEAARPAAPAAPAAPAAPAPagaaaaPAEASAAPAPGVAAPEHHPKHVAVPDASDGgdgWPAKAGGAAPAAP 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 305 MLPRIQPQALQIQTQPKllRQAQTQTSPEHLAPQQDQVPTQAQSQEQTsektQDQPQTWPQGSVPPPEQASGPACATEPQ 384
Cdd:PRK07764 682 PPAPAPAAPAAPAGAAP--AQPAPAPAATPPAGQADDPAAQPPQAAQG----ASAPSPAADDPVPLPPEPDDPPDPAGAP 755
|
170 180 190
....*....|....*....|....*....|....*....
gi 357527437 385 LSSHAAEAGSDPDKALPEP-VSAQSSEDRSREASAGGLD 422
Cdd:PRK07764 756 AQPPPPPAPAPAAAPAAAPpPSPPSEEEEMAEDDAPSMD 794
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
168-424 |
4.96e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 40.46 E-value: 4.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 168 PINPSQLNHSGRNTQKQARTPSSTTPNRKDSSSQTVPLEDREDPTEGSEEATELQMDTcedQDSLVGPDSMLSEPQVP-- 245
Cdd:PRK08691 360 PLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPS---EGKTAGPVSNQENNDVPpw 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 246 --EPEPFETLEPPAKrcrsseestekgptgQPQARVQPQTQMTAPKQTQTPDRLPEPPEVQMLPRIQPQALQIQTQPKll 323
Cdd:PRK08691 437 edAPDEAQTAAGTAQ---------------TSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPIQATPN-- 499
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 324 RQAQTQTSPEHLAPQQdqvPTQAQSQEQTSEKTQDQPQtwpqgsVPPPEQASGPACATEPQLSSHAAEAGSDPDKALP-E 402
Cdd:PRK08691 500 DEAVETETFAHEAPAE---PFYGYGFPDNDCPPEDGAE------IPPPDWEHAAPADTAGGGADEEAEAGGIGGNNTPsA 570
|
250 260
....*....|....*....|..
gi 357527437 403 PVSAQSSEDRSREASAGGLDLG 424
Cdd:PRK08691 571 PPPEFSTENWAAIVRHFARKLG 592
|
|
| PRK12757 |
PRK12757 |
cell division protein FtsN; Provisional |
271-378 |
6.03e-03 |
|
cell division protein FtsN; Provisional
Pssm-ID: 237191 [Multi-domain] Cd Length: 256 Bit Score: 39.26 E-value: 6.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 271 PTGQPQARVQPQ---------TQMTAPKQtQTPDRLPEPPEVQMLPRIQPQALQIQTQPKLLRQAQTQTSPehlAPQQDQ 341
Cdd:PRK12757 68 PSAGGEVNSPTQltdeqrqllEQMQADMR-QQPTQLSEVPYNEQTPQVPRSTVQIQQQAQQQQPPATTAQP---QPVTPP 143
|
90 100 110
....*....|....*....|....*....|....*..
gi 357527437 342 VPTQAQSQEQTSEKTQDQPQTWPQGSVPPPEQASGPA 378
Cdd:PRK12757 144 RQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKE 180
|
|
| PRK10927 |
PRK10927 |
cell division protein FtsN; |
254-374 |
7.25e-03 |
|
cell division protein FtsN;
Pssm-ID: 236797 [Multi-domain] Cd Length: 319 Bit Score: 39.28 E-value: 7.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 254 EPPAKRCRSSEESTEKGPTGQPQARVQPQTQMTAPKQTQTpdRLPEPPEVQMLPRIQPQALQIQTQPKLLrQAQTQTSPE 333
Cdd:PRK10927 144 QTPEQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQT--RTSQAAPVQAQPRQSKPASTQQPYQDLL-QTPAHTTAQ 220
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 357527437 334 HLAPQQDQVPTQAQSQEQTSEKTQDQPQTWPQGSVPPPEQA 374
Cdd:PRK10927 221 SKPQQAAPVTRAADAPKPTAEKKDERRWMVQCGSFRGAEQA 261
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
265-400 |
7.81e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 39.97 E-value: 7.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 265 ESTEKGPTGQPQARVQPQTQMTAPKQTQTPDRLPEPPEVQMLPRIQPQAlqiQTQPKLLRQAQTQTSPEHLAPQQDQVPT 344
Cdd:PRK07764 379 ERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAA---APQPAPAPAPAPAPPSPAGNAPAGGAPS 455
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 357527437 345 QAQSQEQTSEKTQDQPQTWPQGSVPPPEQASGPACATEPQLSSH-AAEAGSDPDKAL 400
Cdd:PRK07764 456 PPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAApAAPAGADDAATL 512
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
130-396 |
8.63e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 39.92 E-value: 8.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 130 PSLAAPSLTPPQMVTPNLQQFFPQATRQSLLGPPPVGVPINPSQLNHSG-------RNTQKQARTPSSTTPNRKdsssqt 202
Cdd:PHA03247 2609 RGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPApgrvsrpRRARRLGRAAQASSPPQR------ 2682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 203 vpledredPTEGSEEATelqmdtcedqdslVGPDSMLSEPQVPEPEPfETLEPPAKRCRSSEESTEKGPTGQPQARVQPQ 282
Cdd:PHA03247 2683 --------PRRRAARPT-------------VGSLTSLADPPPPPPTP-EPAPHALVSATPLPPGPAAARQASPALPAAPA 2740
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357527437 283 TQM--TAPKQTQTPDRLPEPPEVQMLPRIQPQALQIQT-QPKLLRQAQTQTSPEHLAPQQDQVPTQAQSQEQTSEKTQDQ 359
Cdd:PHA03247 2741 PPAvpAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGpPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPP 2820
|
250 260 270
....*....|....*....|....*....|....*....
gi 357527437 360 PQTwPQGSVPPPEQA--SGPACATEPQLSSHAAEAGSDP 396
Cdd:PHA03247 2821 AAS-PAGPLPPPTSAqpTAPPPPPGPPPPSLPLGGSVAP 2858
|
|
| |
