|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
665-1322 |
4.10e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.44 E-value: 4.10e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 665 LEKRVSELRSEIADLEGQAAVLREAhhkascrheeekRQLQmafdEEKAQLQEELRQEHERELQARLQQAAESFRQEREG 744
Cdd:COG1196 191 LEDILGELERQLEPLERQAEKAERY------------RELK----EELKELEAELLLLKLRELEAELEELEAELEELEAE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 745 LAQAawtEEKVRGLEQSYQEQLLSLEEKhalekeelreelsehhRRELQEGREEmETECNRRVSQIEAQCQADCEKvteh 824
Cdd:COG1196 255 LEEL---EAELAELEAELEELRLELEEL----------------ELELEEAQAE-EYELLAELARLEQDIARLEER---- 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 825 ceqtlqslevrhRQELRDLLDQHLEERSQWEFEKDELTQECTDAQEQLKEALQRERATAAAMKQEQEILERTYKDRLNIL 904
Cdd:COG1196 311 ------------RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 905 STERKQLLQDLKDLQNASESQHgllsgQILELKRSQERELRDQGQALcQTGVSEQLASQQLERLRVEHEQERREMTGKLA 984
Cdd:COG1196 379 EELEELAEELLEALRAAAELAA-----QLEELEEAEEALLERLERLE-EELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 985 ALESAHRASLERADQEKAEMSTEICRLQNTVKDMQQAASLLMLQGGCQATAGEEAEGDGAMSLLQQGEQLLEEnGDVLIS 1064
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA-VAVLIG 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1065 LQRAHEHAVKenakmATEISRLQQRLKKLEpgSVISSCLEEGTSEISGSSREQVEPIMKQGPATKHFLSDLGDHEARDLA 1144
Cdd:COG1196 532 VEAAYEAALE-----AALAAALQNIVVEDD--EVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLV 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1145 StgTSSVQRQECKTEASEASLDCFSELENSEDTRTESWDLKSQISQLREQLTVLRADCDRASERKQDLLFDISVLKKKLK 1224
Cdd:COG1196 605 A--SDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELE 682
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1225 MLERlpEASSRYKVLYEDAARENSCLQEELRLVETRYEESLDSNKELTAEVYRLQDEMKKMEEVMETFLSLEKSYDEVKV 1304
Cdd:COG1196 683 ELAE--RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPP 760
|
650
....*....|....*...
gi 554506543 1305 ENEELRALVLRLQGKMEK 1322
Cdd:COG1196 761 DLEELERELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
373-1003 |
1.22e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.90 E-value: 1.22e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 373 LERVDQVVREKEK----LRSDLDKAEKLKSLMASEVD-DHHAAIERRNEYNLRKldEEYKERIAALKNELRQEREQmLQQ 447
Cdd:COG1196 188 LERLEDILGELERqlepLERQAEKAERYRELKEELKElEAELLLLKLRELEAEL--EELEAELEELEAELEELEAE-LAE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 448 VGKQRVELEQEIQKAKTEENYIRDRLALSLKENNRLETELLENAEKLAEYESLTQKLQRSLENVLAEKfgdldpssAEFF 527
Cdd:COG1196 265 LEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL--------EELE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 528 LQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQgrvlrlplknslseeldghsggiepdqgpgseecnplnmSIEA 607
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE---------------------------------------LAEA 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 608 ELVIEQMKEQHHRDLcHLRLELEDKVRHYEKQLDDTRVASEQEQAAMKQKYEQGVHTLEKRVSELRSEIADLEGQAAVLR 687
Cdd:COG1196 378 EEELEELAEELLEAL-RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 688 EAHhkascRHEEEKRQLQMAFDEEKAQLQEELRQEHERELQARLQQAAESFRQEREGLAQAAWTEEKVRGLEQSYQEQLL 767
Cdd:COG1196 457 EEE-----ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIG 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 768 SLEEKHALEKEELREELSEHHRRELQEGREEMETECNRRVSQIEAQCQADCEKVTEHCEQTLQSLEVRHRQELRDLLDQH 847
Cdd:COG1196 532 VEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREA 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 848 LEERSQWEFEKDELTQECTD---AQEQLKEALQRERATAAAMKQEQEILERTYKDRLNILSTERKQLLQDlkDLQNASES 924
Cdd:COG1196 612 DARYYVLGDTLLGRTLVAARleaALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAEL--EELAERLA 689
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 554506543 925 QHGLLSGQILELKRSQERELRDQGQALCQTGVSEQLASQQLERLRVEHEQERREMTGKLAALESAHRASLERADQEKAE 1003
Cdd:COG1196 690 EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERE 768
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
344-921 |
1.84e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.13 E-value: 1.84e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 344 LALENELLVTKNGIHQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRN--EYNLRK 421
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQaeEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 422 LDEEYKERIAALKnELRQEREQMLQQVGKQRVELEQEIQKAKTEENYIRDRLALSLKENNRLETELLENAEKLAEYESLT 501
Cdd:COG1196 296 ELARLEQDIARLE-ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 502 QKLQRSLENVLAEKFGDLDpSSAEFFLQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQGRVLRLPLKNSLSEELd 581
Cdd:COG1196 375 AEAEEELEELAEELLEALR-AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA- 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 582 ghsggiepdqgpgsEECNPLNMSIEAELVIEQMKEQHHRDLCHLRLELEDKVRHYEKQLDDTRVASEQEQAAMKQKYEQG 661
Cdd:COG1196 453 --------------ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 662 VHTLEKRVSELRSEIADLEGQAAVLREAHHKASCRHEEEKRQLQMAFDEEKAQLQEELRQEherELQARLQQAAESFRQE 741
Cdd:COG1196 519 LRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPL---DKIRARAALAAALARG 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 742 REGLAQAAWTEEKVRGLEQSYQEQLLSLEEKHALEKEELREELSEHHRRELQEGREEMETEcNRRVSQIEAQCQADCEKV 821
Cdd:COG1196 596 AIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGG-SAGGSLTGGSRRELLAAL 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 822 TEHcEQTLQSLEVRHRQELRDLLDQHLEERSQWEFEKDELTQECTDAQEQLKEALQRERATAAAMKQEQEILERTYKDRL 901
Cdd:COG1196 675 LEA-EAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEAL 753
|
570 580
....*....|....*....|..
gi 554506543 902 NILSTE--RKQLLQDLKDLQNA 921
Cdd:COG1196 754 EELPEPpdLEELERELERLERE 775
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
425-1095 |
1.13e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.43 E-value: 1.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 425 EYKERIAALKNELRQEREQM------LQQVGKQRVELEQEIQKAKTeenyirdrlALSLKEnnrlETELLENAEKLAEYE 498
Cdd:COG1196 169 KYKERKEEAERKLEATEENLerlediLGELERQLEPLERQAEKAER---------YRELKE----ELKELEAELLLLKLR 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 499 SLTQKLQRSLENVLAEKfgdldpssaeffLQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQgrvlrlplKNSLSE 578
Cdd:COG1196 236 ELEAELEELEAELEELE------------AELEELEAELAELEAELEELRLELEELELELEEAQAE--------EYELLA 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 579 ELDGHSGGIEPDQgpgsEECNPLNMSIEAELVIEQMKEQHHRDLCHLRLELEDKVRHYEKQLDDTRVASEQEQAAMKQKy 658
Cdd:COG1196 296 ELARLEQDIARLE----ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA- 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 659 EQGVHTLEKRVSELRSEIADLEGQAAVLREAHHKASCRHEEEKRQLQMAFDEEKAQLQEELRQEHER-ELQARLQQAAES 737
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEeEEEEALEEAAEE 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 738 FRQEREGLAQAAWTEEKVRGLEQSYQEQLLSLEEKHALEKEELREELSEHHRRE--LQEGREEMETECNRRVSQIEAQCQ 815
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEgfLEGVKAALLLAGLRGLAGAVAVLI 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 816 ADCEKVTEHCEQTLQSLEVrhrqelRDLLDQHLEERSQWEFEKDELTQECTDAQEQLKEALQRERATAAAMKQEQEILER 895
Cdd:COG1196 531 GVEAAYEAALEAALAAALQ------NIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLV 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 896 TYKDRLNILSTERKQLLQDLKDLQNASESQHGLLSGQILELKRSQERELRDQGQALCQTGVSEQLASQQLERLRVEHEQE 975
Cdd:COG1196 605 ASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEEL 684
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 976 RREMTGKLAALESAHRASLERADQEKAEMSTEIcrlqntvkdmqqaasllmlqggcQATAGEEAEGDGAMSLLQQGEQLL 1055
Cdd:COG1196 685 AERLAEEELELEEALLAEEEEERELAEAEEERL-----------------------EEELEEEALEEQLEAEREELLEEL 741
|
650 660 670 680
....*....|....*....|....*....|....*....|
gi 554506543 1056 EENGDVLISLQRAHEHAVKENAKMATEISRLQQRLKKLEP 1095
Cdd:COG1196 742 LEEEELLEEEALEELPEPPDLEELERELERLEREIEALGP 781
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
607-1228 |
6.71e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.12 E-value: 6.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 607 AELVIEQMKEQHHRDLCHLRLELEDKVRHYEKQLDDTRVASEQEQAAMKQkyeqgVHTLEKRVSELRSEIADLEGQAAVL 686
Cdd:COG1196 212 AERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAE-----LAELEAELEELRLELEELELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 687 REAHHKASCRHEEEKRQLQMAfDEEKAQLQEELRQEHERELQARLQQAAESFRQEREgLAQAAWTEEKVRGLEQSYQEQL 766
Cdd:COG1196 287 QAEEYELLAELARLEQDIARL-EERRRELEERLEELEEELAELEEELEELEEELEEL-EEELEEAEEELEEAEAELAEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 767 LSLEEKHAlEKEELREELSEHHRRELQEGREEMETEcnRRVSQIEAQcqadcekvtehcEQTLQSLEVRHRQELRDLLDQ 846
Cdd:COG1196 365 EALLEAEA-ELAEAEEELEELAEELLEALRAAAELA--AQLEELEEA------------EEALLERLERLEEELEELEEA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 847 HLEERSqwefEKDELTQECTDAQEQLKEALQRERATAAAMKQEQEILERtYKDRLNILSTERKQLLQDLKDLQNASESQH 926
Cdd:COG1196 430 LAELEE----EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL-LEAALAELLEELAEAAARLLLLLEAEADYE 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 927 GLLSGQILELKRSQERELRDQGQALCQTGVSEQLASQQLERLRVEHEQERREMTGKlAALESAHRASLERADQEKAemst 1006
Cdd:COG1196 505 GFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAA-AAIEYLKAAKAGRATFLPL---- 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1007 eicrlqNTVKDMQQAASLLMLQGGCQATAGEEAEgdgamslLQQGEQLLEENGDVLISLQRAHEHAVKENAKMATEISRL 1086
Cdd:COG1196 580 ------DKIRARAALAAALARGAIGAAVDLVASD-------LREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRL 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1087 QQRLKKLEPGSVISSCLEEGTSEISGSSREQVEpimkqgpatkhFLSDLGDHEARDLASTGTSSVQRQECKTEASEASLD 1166
Cdd:COG1196 647 REVTLEGEGGSAGGSLTGGSRRELLAALLEAEA-----------ELEELAERLAEEELELEEALLAEEEEERELAEAEEE 715
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 554506543 1167 cfsELENSEDTRTESWDLKSQISQLREQLTVLRADCDRASERKQDLLFDISVLKKKLKMLER 1228
Cdd:COG1196 716 ---RLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLER 774
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1435-1735 |
7.61e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.77 E-value: 7.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1435 LQQEATIAELELEKQKLQELTRNLRERVTALvrqKDAPSQGQKE-EELKAMMQDLQITCGEMQRKVELLRYESEKLQEEN 1513
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAEL---RKELEELEEElEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1514 SILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQ-------EKASIQTMVEKLKKQVSDLKIKNQQLDSENIEL 1586
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAqieqlkeELKALREALDELRAELTLLNEEAANLRERLESL 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1587 SQKNSQNKEELKTLNQRLAEMLCQREEPGACTSEKWEQENAsLKEELDHY---KVQTSTLVSSLEAELSEVKLQTHVMEQ 1663
Cdd:TIGR02168 830 ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE-LESELEALlneRASLEEALALLRSELEELSEELRELES 908
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 554506543 1664 ENLLLKDELERLKQLhrcpdLSDFQQKMSS----ILSYNEKLLKEKEVLSEELKSCADKL-AESSLLEHRIATMKQE 1735
Cdd:TIGR02168 909 KRSELRRELEELREK-----LAQLELRLEGlevrIDNLQERLSEEYSLTLEEAEALENKIeDDEEEARRRLKRLENK 980
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
697-1607 |
1.55e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.62 E-value: 1.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 697 HEEEKRQLQMAfdEEKAQLQEELRQEHERELQARLQQAAESFRQEREGLAQAAWTEEKVRGLEQSYQEQLLSLEEKHALe 776
Cdd:TIGR02168 195 LNELERQLKSL--ERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEE- 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 777 keelreelsehHRRELQEGREEMET------ECNRRVSQIEAQCQADCEKVtEHCEQTLQSLEVRHRQELRDLLDQhLEE 850
Cdd:TIGR02168 272 -----------LRLEVSELEEEIEElqkelyALANEISRLEQQKQILRERL-ANLERQLEELEAQLEELESKLDEL-AEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 851 RSQWEFEKDELTQECTDAQEQLKEAlqrerataAAMKQEQEILERTYKDRLNILSTERKQLLQDLKDLQNasesQHGLLS 930
Cdd:TIGR02168 339 LAELEEKLEELKEELESLEAELEEL--------EAELEELESRLEELEEQLETLRSKVAQLELQIASLNN----EIERLE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 931 GQILELKRSQERELRDQGQALcqtgvsEQLASQQLERLRVEHEQERREMTGKLAALEsAHRASLERADQEKAEMSTEIcr 1010
Cdd:TIGR02168 407 ARLERLEDRRERLQQEIEELL------KKLEEAELKELQAELEELEEELEELQEELE-RLEEALEELREELEEAEQAL-- 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1011 lqntvkdmqqaasllmlqggcQATAGEEAEGDGAMSLLQQGEQLLEENGDvlislqrahehAVKENAKMATEISRLQQRL 1090
Cdd:TIGR02168 478 ---------------------DAAERELAQLQARLDSLERLQENLEGFSE-----------GVKALLKNQSGLSGILGVL 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1091 KKL---EPG--SVISSCLEEGTSEISGSSREQVEPI---MKQGPATKHFLSDLGDHEARDLASTGTSSVQRQECktease 1162
Cdd:TIGR02168 526 SELisvDEGyeAAIEAALGGRLQAVVVENLNAAKKAiafLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEG------ 599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1163 aSLDCFSELENSEDtrteswDLKSQISQLREQLTVLrADCDRASE--RKQDLLFDISVLKKKLkmlerlpeASSRYKVLY 1240
Cdd:TIGR02168 600 -FLGVAKDLVKFDP------KLRKALSYLLGGVLVV-DDLDNALElaKKLRPGYRIVTLDGDL--------VRPGGVITG 663
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1241 EDAARENSCLqeelrlvetryeesldsnkELTAEVYRLQDEMKKMEEvmeTFLSLEKSYDEVKVENEELRALVLRLQGKM 1320
Cdd:TIGR02168 664 GSAKTNSSIL-------------------ERRREIEELEEKIEELEE---KIAELEKALAELRKELEELEEELEQLRKEL 721
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1321 EKVLGRAALQGDSYALWEAPSENLEvasdEKMLELRQTPKECTPKVVSMHHIIEECTQETQCCEQGSTKLLARIKAHEIA 1400
Cdd:TIGR02168 722 EELSRQISALRKDLARLEAEVEQLE----ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE 797
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1401 WFhraikthpekpsaqnrvipEGSAALLGLQDKHLQQEATIAELELEKQKLQELTRNLRERVTALVRQKDAPSqgQKEEE 1480
Cdd:TIGR02168 798 LK-------------------ALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS--EDIES 856
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1481 LKAMMQDLQITCGEMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQT 1560
Cdd:TIGR02168 857 LAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEV 936
|
890 900 910 920
....*....|....*....|....*....|....*....|....*...
gi 554506543 1561 MVEKLKKQVSDLKIKNQQLDSENIELSQKNSQN-KEELKTLNQRLAEM 1607
Cdd:TIGR02168 937 RIDNLQERLSEEYSLTLEEAEALENKIEDDEEEaRRRLKRLENKIKEL 984
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1436-1805 |
6.48e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 64.27 E-value: 6.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1436 QQEATIAELELEKQKLQELTRNLRERVTALVRQKDapsqgQKEEELkamMQDLQITCGEMQRKVELLRYESEKLQEENSI 1515
Cdd:TIGR04523 268 QLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNN-----QKEQDW---NKELKSELKNQEKKLEEIQNQISQNNKIISQ 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1516 LRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQTMVEKLKKQVSDLKIKNQQLDSENIELSQKNSQNKE 1595
Cdd:TIGR04523 340 LNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQ 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1596 ELKTLNQRLAEMLCQREEPGAcTSEKWEQENASLK---EELDHYKVQTSTLVSSLEAELSEVKLQTHVMEQENLLLKDEL 1672
Cdd:TIGR04523 420 EKELLEKEIERLKETIIKNNS-EIKDLTNQDSVKEliiKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKEL 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1673 ERLKQLHRCPD--LSDFQQKMSSILSYNEKLLKEKEVLSEELKSCADKLAE------SSLLE-------HRIATMKQEQT 1737
Cdd:TIGR04523 499 KKLNEEKKELEekVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKddfelkKENLEkeideknKEIEELKQTQK 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1738 A--------------WEEQSESLKSQLAVSQAKVQNLEDVLQNVNLQMAEIESDLQVTRQEKEALKQEVMSLHRQLQNAI 1803
Cdd:TIGR04523 579 SlkkkqeekqelidqKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIR 658
|
..
gi 554506543 1804 DK 1805
Cdd:TIGR04523 659 NK 660
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
355-888 |
7.11e-10 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 64.55 E-value: 7.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 355 NGIHQAALasfKA-EIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMAS-----EVDDHHAAIERRNEyNLRKLDEEY-- 426
Cdd:COG4913 238 ERAHEALE---DArEQIELLEPIRELAERYAAARERLAELEYLRAALRLwfaqrRLELLEAELEELRA-ELARLEAELer 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 427 -KERIAALKNELRQEREQMLQQVGKQRVELEQEIQKAKTEENYIRDRLALSLKENNRLETELLENAEKLAEYESLTQKLQ 505
Cdd:COG4913 314 lEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 506 RSLENVLAEkfgdldpssaefflQEERLAQMRNEYEQqcrlLQDQVDELQSELEEYQAQG-----RVLRlpLKNSLSEEL 580
Cdd:COG4913 394 EALEEELEA--------------LEEALAEAEAALRD----LRRELRELEAEIASLERRKsnipaRLLA--LRDALAEAL 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 581 dghsgGIEPDQGPgseecnplnmsIEAELVieQMKEQHH-------RDLCHLRLEL------EDKVRHY------EKQLD 641
Cdd:COG4913 454 -----GLDEAELP-----------FVGELI--EVRPEEErwrgaieRVLGGFALTLlvppehYAAALRWvnrlhlRGRLV 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 642 DTRVASEQEQAAMKQKYEQG-VHTLEKRVSELRSEIADLEGQA-----------------AVLREAHHKAS-CRHE---- 698
Cdd:COG4913 516 YERVRTGLPDPERPRLDPDSlAGKLDFKPHPFRAWLEAELGRRfdyvcvdspeelrrhprAITRAGQVKGNgTRHEkddr 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 699 -EEKRQLQMAFD---------EEKAQLQEELR--QEHERELQARLQQAAESfRQEREGLAQAAWTEEKVRGLEQSY---Q 763
Cdd:COG4913 596 rRIRSRYVLGFDnraklaaleAELAELEEELAeaEERLEALEAELDALQER-REALQRLAEYSWDEIDVASAEREIaelE 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 764 EQLLSLEEkhALEKEELREELSEHHRRELQEGREEMEtECNRRVSQIEAQcQADCEKVTEHCEQTLQSLEVRHRQELRDL 843
Cdd:COG4913 675 AELERLDA--SSDDLAALEEQLEELEAELEELEEELD-ELKGEIGRLEKE-LEQAEEELDELQDRLEAAEDLARLELRAL 750
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 554506543 844 LDQHLEERSQWEFEKdELTQECTDAQEQLKEALQR-ERATAAAMKQ 888
Cdd:COG4913 751 LEERFAAALGDAVER-ELRENLEERIDALRARLNRaEEELERAMRA 795
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
373-1094 |
2.12e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 2.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 373 LERVDQVVRE----KEKLRSDLDKAEKLKSLMASE--------VDDHHAAIERRNEYNLRKldEEYKERIAALKNELrQE 440
Cdd:TIGR02168 188 LDRLEDILNElerqLKSLERQAEKAERYKELKAELrelelallVLRLEELREELEELQEEL--KEAEEELEELTAEL-QE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 441 REQMLQQVGKQRVELEQEIQKAKTEEN--------------YIRDRLALSLKENNRLETELLENAEKLAEYESLTQKLQR 506
Cdd:TIGR02168 265 LEEKLEELRLEVSELEEEIEELQKELYalaneisrleqqkqILRERLANLERQLEELEAQLEELESKLDELAEELAELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 507 ---SLENVLAEKFGDLDPSSAEFFLQEERLAQMRNEYEQQCR---LLQDQVDELQSELEEYQAQGRVLRLPLKNSLSEEL 580
Cdd:TIGR02168 345 kleELKEELESLEAELEELEAELEELESRLEELEEQLETLRSkvaQLELQIASLNNEIERLEARLERLEDRRERLQQEIE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 581 DGHSGGIEPDQGPGSEECNPLNMSIEAELVIEQMKEQHHRDLCHLRLELEDKVRHYEKQLD--DTRVASEQEQAAMKQKY 658
Cdd:TIGR02168 425 ELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAqlQARLDSLERLQENLEGF 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 659 EQGVHTLEK----------RVSELRSEIADLE-GQAAVLREAHHKASCRHEEEKRQLQmAFDEEKAQLQE---ELRQEHE 724
Cdd:TIGR02168 505 SEGVKALLKnqsglsgilgVLSELISVDEGYEaAIEAALGGRLQAVVVENLNAAKKAI-AFLKQNELGRVtflPLDSIKG 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 725 RELQARLQQAAESFRQEREGLAQAAWTEEKVRGLEQ----------SYQEQLLSLEEKHALEK----------------- 777
Cdd:TIGR02168 584 TEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvdDLDNALELAKKLRPGYRivtldgdlvrpggvitg 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 778 -EELREELSEHHRRELQEGREEME------TECNRRVSQIEAQcQADCEKVTEHCEQTLQSLEVRHRqELRDLLDQHLEE 850
Cdd:TIGR02168 664 gSAKTNSSILERRREIEELEEKIEeleekiAELEKALAELRKE-LEELEEELEQLRKELEELSRQIS-ALRKDLARLEAE 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 851 RSQWEFEKDELTQECTDAQEQLKEALQR---ERATAAAMKQEQEILERTYKDRLNILSTERKQLLQDLKDLQNASESQHG 927
Cdd:TIGR02168 742 VEQLEERIAQLSKELTELEAEIEELEERleeAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN 821
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 928 LLSG--QILELKRSQERELRDQGQALCQTGVSEQLASQQLERLRVEHEQERREMTGKLAALESAHRAsLERADQEKAEMS 1005
Cdd:TIGR02168 822 LRERleSLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA-LALLRSELEELS 900
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1006 TEICRLQNTVKDMQQAASLLMLQGGCQATAGEEAEGDgamsLLQQGEQLLEENGDVLislqrahEHAVKENAKMATEISR 1085
Cdd:TIGR02168 901 EELRELESKRSELRRELEELREKLAQLELRLEGLEVR----IDNLQERLSEEYSLTL-------EEAEALENKIEDDEEE 969
|
....*....
gi 554506543 1086 LQQRLKKLE 1094
Cdd:TIGR02168 970 ARRRLKRLE 978
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
869-1613 |
3.96e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 3.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 869 QEQLKEALQRERATAAAMKQEQEILERTYKdRLNILSTERKQLlQDLKDLQNA-SESQHGLLSGQILELKRSQER--ELR 945
Cdd:TIGR02168 171 KERRKETERKLERTRENLDRLEDILNELER-QLKSLERQAEKA-ERYKELKAElRELELALLVLRLEELREELEElqEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 946 DQGQALCQTGVSE-QLASQQLERLRVEHEQERREM----------TGKLAALES---AHRASLERADQEKAEMSTEICRL 1011
Cdd:TIGR02168 249 KEAEEELEELTAElQELEEKLEELRLEVSELEEEIeelqkelyalANEISRLEQqkqILRERLANLERQLEELEAQLEEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1012 QNTVKDMQQAASLLMLQGGCQAT--AGEEAEGDGAMSLLQQGEQLLEENGDVLISLQRAHEHAVKENAKMATEISRLQQR 1089
Cdd:TIGR02168 329 ESKLDELAEELAELEEKLEELKEelESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1090 LKKLEpgsvisSCLEEGTSEISGSSREQVEPIMKQGPATkhflSDLGDHEARDLASTGTSSVQRQECKTEASEASldcfs 1169
Cdd:TIGR02168 409 LERLE------DRRERLQQEIEELLKKLEEAELKELQAE----LEELEEELEELQEELERLEEALEELREELEEA----- 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1170 elensedtRTESWDLKSQISQLREQLTVLRADCDRASERKQDLLFdisVLKKKLKMLERLPEASSRYKVLYEDAARENSC 1249
Cdd:TIGR02168 474 --------EQALDAAERELAQLQARLDSLERLQENLEGFSEGVKA---LLKNQSGLSGILGVLSELISVDEGYEAAIEAA 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1250 LQEELRLVETRYEES--------------------LDSNKELTAEVYRLQdEMKKMEEVMETFLSLEKSYDEVKVENEEL 1309
Cdd:TIGR02168 543 LGGRLQAVVVENLNAakkaiaflkqnelgrvtflpLDSIKGTEIQGNDRE-ILKNIEGFLGVAKDLVKFDPKLRKALSYL 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1310 RALV---------LRLQGKMEKVLGRAALQGD------SYALWEAPSENLEVASDEKMLELRQTPKECTPKVVSMHHIIE 1374
Cdd:TIGR02168 622 LGGVlvvddldnaLELAKKLRPGYRIVTLDGDlvrpggVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALA 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1375 ECTQETQCCEQGSTKLLARIKAHE---------IAWFHRAIKTHPEKPSAQNRVIPEGSAALLGLQDKHLQQEATIAELE 1445
Cdd:TIGR02168 702 ELRKELEELEEELEQLRKELEELSrqisalrkdLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE 781
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1446 LEKQKLQELTRNLRERVTALVRQKDapsqgqkeeELKAMMQDLQITCGEMQRKVELLRYESEKLQEENSILRNEITTLNE 1525
Cdd:TIGR02168 782 AEIEELEAQIEQLKEELKALREALD---------ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE 852
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1526 EDSISNLKLEELNGSQEELWQKIETIEQEKASIQTMVEKLKKQVSDLKIKNQQLDSENIELSQKNSQNKEELKTLNQRLA 1605
Cdd:TIGR02168 853 DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLE 932
|
....*...
gi 554506543 1606 EMLCQREE 1613
Cdd:TIGR02168 933 GLEVRIDN 940
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1476-1816 |
5.11e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.57 E-value: 5.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1476 QKEEELKAMMQDLQITCGEMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEK 1555
Cdd:TIGR04523 398 SKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSI 477
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1556 ASIQTMVEKLKKQvsdLKIKNQQLDseniELSQKNSQNKEELKTLNQRLAEMLCQREEPGACTSEKwEQENASLKEELDh 1635
Cdd:TIGR04523 478 NKIKQNLEQKQKE---LKSKEKELK----KLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEK-ESKISDLEDELN- 548
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1636 ykvqtstlvsSLEAELSEVKLQTHVMEQEnlllkdelERLKQLHrcpdlsdfqQKMSSILSYNEKLLKEKEVLSEELKSC 1715
Cdd:TIGR04523 549 ----------KDDFELKKENLEKEIDEKN--------KEIEELK---------QTQKSLKKKQEEKQELIDQKEKEKKDL 601
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1716 ADKLAEsslLEHRIATMKQEQTAWEEQSESLKSQLAVSQAKVQNLEDVLQNVNLQMAEIESDLQVTRQEKEALKQEVMSL 1795
Cdd:TIGR04523 602 IKEIEE---KEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDI 678
|
330 340
....*....|....*....|.
gi 554506543 1796 hrqlqNAIDKDWVSETAPHLS 1816
Cdd:TIGR04523 679 -----IELMKDWLKELSLHYK 694
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
359-1011 |
2.51e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 2.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 359 QAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVddhhaaieRRNEYNLRKLDEEYKERIAALKNELR 438
Cdd:TIGR02168 357 EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEI--------ERLEARLERLEDRRERLQQEIEELLK 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 439 QEREQMLQQVGKQRVELEQEIQKAKTEENYIRDRLALSLKENNRLETELLENAEKLAEYESLTQKLQRSLENVL------ 512
Cdd:TIGR02168 429 KLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfsegv 508
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 513 ------AEKFGDLDPSSAEFFlqeerlaQMRNEYEQ------QCRLLQDQVDELQSELEEYQAQ-----GRVLRLPLKNS 575
Cdd:TIGR02168 509 kallknQSGLSGILGVLSELI-------SVDEGYEAaieaalGGRLQAVVVENLNAAKKAIAFLkqnelGRVTFLPLDSI 581
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 576 LSEELDGHSGGIEPDQGPGSEECNPL-NMSIEAELVIEQMkeqhhrdLCHLR--------LELEDKVRHYEK--QLDDTR 644
Cdd:TIGR02168 582 KGTEIQGNDREILKNIEGFLGVAKDLvKFDPKLRKALSYL-------LGGVLvvddldnaLELAKKLRPGYRivTLDGDL 654
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 645 VASEQEQAAMKQKYEQGVHTLEKRVSELRSEIADLEGQAavlreahhkascrheeekRQLQMAFDEEKAQLQEelRQEHE 724
Cdd:TIGR02168 655 VRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKI------------------AELEKALAELRKELEE--LEEEL 714
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 725 RELQARLQQAAESFRQEREGLAQAAWTEEKVRGLEQSYQEQLLSLEEKHALEKEELREElsehhRRELQEGREEMETEcN 804
Cdd:TIGR02168 715 EQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA-----EEELAEAEAEIEEL-E 788
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 805 RRVSQIEAQCQADcekvtehcEQTLQSLEVRHrQELRDLLDQHLEERSQWEFEKDELTQECTDAQEQLKEALQRERATAA 884
Cdd:TIGR02168 789 AQIEQLKEELKAL--------REALDELRAEL-TLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAA 859
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 885 AMKQEQEiLERTYKDRLNILSTERKQLLQDLK----DLQNASESQHGlLSGQILELKRsQERELRDQ-GQALCQTGVSEQ 959
Cdd:TIGR02168 860 EIEELEE-LIEELESELEALLNERASLEEALAllrsELEELSEELRE-LESKRSELRR-ELEELREKlAQLELRLEGLEV 936
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 554506543 960 LASQQLERLRVEHEQERREMtgklAALESAHRASLERADQEKAEMSTEICRL 1011
Cdd:TIGR02168 937 RIDNLQERLSEEYSLTLEEA----EALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1010-1789 |
3.11e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.98 E-value: 3.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1010 RLQNTVKDMQQAASLlmlQGGCQATAGEEAEGDGAMSLLQQGeqLLEENGDVLISLQRAHEHAVKENAKMATEISRlqqr 1089
Cdd:pfam15921 146 QLQNTVHELEAAKCL---KEDMLEDSNTQIEQLRKMMLSHEG--VLQEIRSILVDFEEASGKKIYEHDSMSTMHFR---- 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1090 lkklEPGSVISSCLEEGTSEISgSSREQVEPIMKQGPATKHflsdlgdhEARDLASTgtsSVQRQECKTEA--SEASLDC 1167
Cdd:pfam15921 217 ----SLGSAISKILRELDTEIS-YLKGRIFPVEDQLEALKS--------ESQNKIEL---LLQQHQDRIEQliSEHEVEI 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1168 FSELENSEDTRTESWDLKSQISQLREQLtvlRADCDRASERKQDLLFDISVLKKKLKMLERLpeassrykvlYEDAAREn 1247
Cdd:pfam15921 281 TGLTEKASSARSQANSIQSQLEIIQEQA---RNQNSMYMRQLSDLESTVSQLRSELREAKRM----------YEDKIEE- 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1248 scLQEELRLVETRYEESLDSNKELTAEVYRLQDEMKKMEEVM---ETFLSLEKS----------------------YDEV 1302
Cdd:pfam15921 347 --LEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLhkrEKELSLEKEqnkrlwdrdtgnsitidhlrreLDDR 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1303 KVENEELRALVLRL----QGKMEKVLgrAALQGDSYALWEAPSENLEVASDEKMLelRQTPKECTPKVVSMhhiieectq 1378
Cdd:pfam15921 425 NMEVQRLEALLKAMksecQGQMERQM--AAIQGKNESLEKVSSLTAQLESTKEML--RKVVEELTAKKMTL--------- 491
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1379 etQCCEQGSTKLLARIKAHEiawfhRAIK-THPEKPSAQNRVipegSAALLGLQD--------KHLQQEATIAELEL-EK 1448
Cdd:pfam15921 492 --ESSERTVSDLTASLQEKE-----RAIEaTNAEITKLRSRV----DLKLQELQHlknegdhlRNVQTECEALKLQMaEK 560
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1449 QKLQELTRNLRERVTALVrqkdapsqGQKEEELKAMmqdlQITCGEMQRKVELLRYESEKLQEENSILRNEITTLneEDS 1528
Cdd:pfam15921 561 DKVIEILRQQIENMTQLV--------GQHGRTAGAM----QVEKAQLEKEINDRRLELQEFKILKDKKDAKIREL--EAR 626
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1529 ISNLKLEEL---NGSQEELwQKIETIEQEKASIQTMVEKLKKQVSDLkiknqqldSENIELSQKNSQNK-EELKTlnqrl 1604
Cdd:pfam15921 627 VSDLELEKVklvNAGSERL-RAVKDIKQERDQLLNEVKTSRNELNSL--------SEDYEVLKRNFRNKsEEMET----- 692
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1605 aemlcqreepgacTSEKWEQENASLKEELDhykvQTSTLVSSLEAELSEVKLQTHVMEQENLLLKDELERLkqlhrcpdl 1684
Cdd:pfam15921 693 -------------TTNKLKMQLKSAQSELE----QTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDAL--------- 746
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1685 sdfQQKMSSILSYNEKLLKEKEVLSEElkscadklaeSSLLEHRIATMKQEQTAWEEQSESLKSQLAVSQAKVQNLEDVL 1764
Cdd:pfam15921 747 ---QSKIQFLEEAMTNANKEKHFLKEE----------KNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVAL 813
|
810 820
....*....|....*....|....*
gi 554506543 1765 QNVNLQMAEIESDLQvtRQEKEALK 1789
Cdd:pfam15921 814 DKASLQFAECQDIIQ--RQEQESVR 836
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1449-1797 |
3.55e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 3.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1449 QKLQELTRNLRERVTALVRQKdapSQGQKEEELKAMMQDLQITC-----GEMQRKVELLRYESEKLQEENSILRNEITTL 1523
Cdd:TIGR02168 189 DRLEDILNELERQLKSLERQA---EKAERYKELKAELRELELALlvlrlEELREELEELQEELKEAEEELEELTAELQEL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1524 NEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQTMVEKLKKQVSDLKIKNQQLDSENIELSQKNSQNKEELKTLNQR 1603
Cdd:TIGR02168 266 EEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1604 LAEmlcqreepgacTSEKWEQENASLKEELDHYKVQTSTLvSSLEAELSEVKLQTHVMEQENLLLKDELERLKqlhrcpd 1683
Cdd:TIGR02168 346 LEE-----------LKEELESLEAELEELEAELEELESRL-EELEEQLETLRSKVAQLELQIASLNNEIERLE------- 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1684 lsdfqQKMSSILSYNEKLLKEKEVLSEELKSCADKLAESSLLEHR--IATMKQEQTAWEEQSESLKSQLAVSQAKVQNLE 1761
Cdd:TIGR02168 407 -----ARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEeeLEELQEELERLEEALEELREELEEAEQALDAAE 481
|
330 340 350
....*....|....*....|....*....|....*.
gi 554506543 1762 DVLQNVNLQMAEIESDLQVTRQEKEALKQEVMSLHR 1797
Cdd:TIGR02168 482 RELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
320-911 |
3.80e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 3.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 320 ENSQEILKALDFSLDGNINLTELTLALENELLVTKNGIHQAALASFKA---EIRHLLERVDQVVREKEKLRSDLDKAEKL 396
Cdd:TIGR02168 329 ESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEleeQLETLRSKVAQLELQIASLNNEIERLEAR 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 397 KSLMASEVDDHHAAIERRNEYNLRKLDEEYKERIAALKNELRQ------EREQMLQQVGKQRVELEQEIQKAKTEENYIR 470
Cdd:TIGR02168 409 LERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEElqeeleRLEEALEELREELEEAEQALDAAERELAQLQ 488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 471 DRLALSLKENNRLET------ELLENAEKLAEYESL-------TQKLQRSLENVLAEKFGDLDPSSAEF------FLQEE 531
Cdd:TIGR02168 489 ARLDSLERLQENLEGfsegvkALLKNQSGLSGILGVlselisvDEGYEAAIEAALGGRLQAVVVENLNAakkaiaFLKQN 568
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 532 RL------------AQMRNEYEQQCRLLQDQVDELQSELEEYQAQGRVL----------------RLPLKNSLSEE---- 579
Cdd:TIGR02168 569 ELgrvtflpldsikGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllggvlvvddldnALELAKKLRPGyriv 648
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 580 -LDGH---SGGIEpDQGPGSEECNPLNMSIEAELVIEQMKEQHH--RDLCHLRLELEDKVRHYEKQLDDTRVASEQ---- 649
Cdd:TIGR02168 649 tLDGDlvrPGGVI-TGGSAKTNSSILERRREIEELEEKIEELEEkiAELEKALAELRKELEELEEELEQLRKELEElsrq 727
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 650 --EQAAMKQKYEQGVHTLEKRVSELRSEIADLEGQAAVLREAHHKASCRHEEEKRQLQmAFDEEKAQLQEELRQEHER-- 725
Cdd:TIGR02168 728 isALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIE-ELEAQIEQLKEELKALREAld 806
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 726 ELQARLQQAAESFRQEREGLAQAAWTEEKVRGLEQSYQEQLLSLEEkhalekeelREELSEHHRRELQEGREEMETECNr 805
Cdd:TIGR02168 807 ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE---------DIESLAAEIEELEELIEELESELE- 876
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 806 RVSQIEAQCQADCEKVTEHCEQ---TLQSLEvRHRQELRDLLDQHLEERSQWEFEKDELTQECTDAQEQLKEALQRERAT 882
Cdd:TIGR02168 877 ALLNERASLEEALALLRSELEElseELRELE-SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEE 955
|
650 660
....*....|....*....|....*....
gi 554506543 883 AAAMKQEQEILERTYKDRLNILSTERKQL 911
Cdd:TIGR02168 956 AEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
404-1291 |
5.02e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 5.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 404 VDDHHAAIERrneyNLRKLDEEYK--ERIAALKNELRQEREQML----QQVGKQRVELEQEIQKAKTEENYIRDRLALSL 477
Cdd:TIGR02168 191 LEDILNELER----QLKSLERQAEkaERYKELKAELRELELALLvlrlEELREELEELQEELKEAEEELEELTAELQELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 478 KENNRLETELLENAEKLAEYESLTQKLQRSLENVLAEKFgdldpssaeffLQEERLAQMRNEYEQqcrlLQDQVDELQSE 557
Cdd:TIGR02168 267 EKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ-----------ILRERLANLERQLEE----LEAQLEELESK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 558 LEEYQAQgrvlrlplKNSLSEELDghsggiepdqgpgseecnplnmsiEAELVIEQMKEQHHrdlchlrlELEDKVRHYE 637
Cdd:TIGR02168 332 LDELAEE--------LAELEEKLE------------------------ELKEELESLEAELE--------ELEAELEELE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 638 KQLDDTRVASEQEQAAMKQKYEQgVHTLEKRVSELRSEIADLEGQAAVLREAHHKASCRHEEEKRQLQMAFDEEKAQLQE 717
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLELQ-IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELE 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 718 ELRQEHEReLQARLQQAAESFRQEREGLAQAAWTEEKVRGLEQSYQEQLLSLEEKHALEKEELREELSEHHRR----ELQ 793
Cdd:TIGR02168 451 ELQEELER-LEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILgvlsELI 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 794 EGREEMETEC----------------NRRVSQIEAQCQADCEKVT-----EHCEQTLQSLEVRHRQELRDLLDQHLEERS 852
Cdd:TIGR02168 530 SVDEGYEAAIeaalggrlqavvvenlNAAKKAIAFLKQNELGRVTflpldSIKGTEIQGNDREILKNIEGFLGVAKDLVK 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 853 QWEFEKDEL---------TQECTDAQEQLKEALQRER--------------ATAAAMKQEQEILERtyKDRLNILSTERK 909
Cdd:TIGR02168 610 FDPKLRKALsyllggvlvVDDLDNALELAKKLRPGYRivtldgdlvrpggvITGGSAKTNSSILER--RREIEELEEKIE 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 910 QLLQDLKDLQNASESQHGLLSG--QILELKRSQERELRDQGQALCQTGVSEQLASQQLERLRVEHEQERREMTGKLAALE 987
Cdd:TIGR02168 688 ELEEKIAELEKALAELRKELEEleEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 988 SAhrasLERADQEKAEMSTEICRLQNTVKDMQQAASLLMLQGgcQATAGEEAEGDGAMSLLQQGEQLLEENgdvLISLQR 1067
Cdd:TIGR02168 768 ER----LEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL--DELRAELTLLNEEAANLRERLESLERR---IAATER 838
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1068 AHEHAVKENAKMATEISRLQQRLKKLE-PGSVISSCLEEGTSEISGSSREQvepimkqgpatkhflsdlgdHEARDLAST 1146
Cdd:TIGR02168 839 RLEDLEEQIEELSEDIESLAAEIEELEeLIEELESELEALLNERASLEEAL--------------------ALLRSELEE 898
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1147 GTSSVQRQECKTEASEASLDCFSELENSEDTRTESwdLKSQISQLREQLTVL-RADCDRASERKQDLLFDISVLKKKLKM 1225
Cdd:TIGR02168 899 LSEELRELESKRSELRRELEELREKLAQLELRLEG--LEVRIDNLQERLSEEySLTLEEAEALENKIEDDEEEARRRLKR 976
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 554506543 1226 LERLPEASSRYKVLYEdaarensclqEELRLVETRYEEsLDSNKE-LTAEVYRLQDEMKKMEEVMET 1291
Cdd:TIGR02168 977 LENKIKELGPVNLAAI----------EEYEELKERYDF-LTAQKEdLTEAKETLEEAIEEIDREARE 1032
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
360-689 |
5.88e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 5.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 360 AALASFKAEIRHLLERVDQVVREKEKLRSDLDkaEKLKSLMASEVDDHHAaiERRNEYNLRKLDEEYKERIAAlKNELRQ 439
Cdd:TIGR02169 163 AGVAEFDRKKEKALEELEEVEENIERLDLIID--EKRQQLERLRREREKA--ERYQALLKEKREYEGYELLKE-KEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 440 EREQMLQQVGKQRVELEQ---EIQKAKTEENYIRDRLA-LSLKENNRLETELLENAEKLAEYESLTQKLQRSLEnVLAEK 515
Cdd:TIGR02169 238 QKEAIERQLASLEEELEKlteEISELEKRLEEIEQLLEeLNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIA-EKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 516 FGDLDPSSAEFFLQ----EERLAQMRNEYEQQCRL----------LQDQVDELQSELEEYQAQGRVLRLPLKnSLSEELD 581
Cdd:TIGR02169 317 LEDAEERLAKLEAEidklLAEIEELEREIEEERKRrdklteeyaeLKEELEDLRAELEEVDKEFAETRDELK-DYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 582 GHSGGIEPDQGpgsEECNPLNMSIEAELVIEQMK------EQHHRDLCHLRLELEDKVRHYE---KQLDDTRVASEQEQA 652
Cdd:TIGR02169 396 KLKREINELKR---ELDRLQEELQRLSEELADLNaaiagiEAKINELEEEKEDKALEIKKQEwklEQLAADLSKYEQELY 472
|
330 340 350
....*....|....*....|....*....|....*..
gi 554506543 653 AMKQKYEQgvhtLEKRVSELRSEIADLEGQAAVLREA 689
Cdd:TIGR02169 473 DLKEEYDR----VEKELSKLQRELAEAEAQARASEER 505
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1433-1766 |
1.36e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 1.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1433 KHLQQEATIAElelekqKLQELTRNLRERvtalvrqkdapsqgqKEEELKAMMQDLQITCGEMQRKVELLRYESEKLQEE 1512
Cdd:COG1196 203 EPLERQAEKAE------RYRELKEELKEL---------------EAELLLLKLRELEAELEELEAELEELEAELEELEAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1513 NSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASiqtmvekLKKQVSDLKIKNQQLDSENIELSQKNSQ 1592
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR-------LEERRRELEERLEELEEELAELEEELEE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1593 NKEELKTLNQRLAEMLCQREEPGAC---TSEKWEQENASLKEELDHYKVQTSTLVSSLEAELSEVKLQTHVMEQENLLLK 1669
Cdd:COG1196 335 LEEELEELEEELEEAEEELEEAEAElaeAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1670 DELERLKQLhrcpdlsdfQQKMSSILSYNEKLLKEKEVLSEELKSCADKLAESSLLEHRIATMKQEQTAWEEQSESLKSQ 1749
Cdd:COG1196 415 RLERLEEEL---------EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE 485
|
330
....*....|....*..
gi 554506543 1750 LAVSQAKVQNLEDVLQN 1766
Cdd:COG1196 486 LAEAAARLLLLLEAEAD 502
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
606-1094 |
1.36e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.85 E-value: 1.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 606 EAELVIEQMKE--QHHRDLCHLR------LELEDKVRHYEKQLDDTRVASEQEQAAMKQKYEQGVHTLEKRVSELRSEIA 677
Cdd:COG4913 226 AADALVEHFDDleRAHEALEDAReqiellEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 678 DLEGQAAVLREAHHKASCRHEEEKRQLQMAFDEEKAQLQEELRQEhERELQaRLQQAAESFRQEREGL-AQAAWTEEKVR 756
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERL-ERELE-ERERRRARLEALLAALgLPLPASAEEFA 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 757 GLEQSYQEQLLSLEEKHALEKEELREELSEHH--RRELQEGREEMETECNRRVS----------QIEAQCQAD------- 817
Cdd:COG4913 384 ALRAEAAALLEALEEELEALEEALAEAEAALRdlRRELRELEAEIASLERRKSNiparllalrdALAEALGLDeaelpfv 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 818 CE--KVTEHC-------EQTLQSL------EVRHRQELRDLLDQ-HLEERSQWE-------------FEKDELTQE---- 864
Cdd:COG4913 464 GEliEVRPEEerwrgaiERVLGGFaltllvPPEHYAAALRWVNRlHLRGRLVYErvrtglpdperprLDPDSLAGKldfk 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 865 -------------------CTDAQEQLKealQRERA-TAAAM-KQEQEILE---RTYKDRLNILSTERKQLLQDLKDLQN 920
Cdd:COG4913 544 phpfrawleaelgrrfdyvCVDSPEELR---RHPRAiTRAGQvKGNGTRHEkddRRRIRSRYVLGFDNRAKLAALEAELA 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 921 ASESQHGLLSGQILELKRsQERELRDQGQAL--CQTGVSEQLASQQLERLRVEHEQERREMT---GKLAALES---AHRA 992
Cdd:COG4913 621 ELEEELAEAEERLEALEA-ELDALQERREALqrLAEYSWDEIDVASAEREIAELEAELERLDassDDLAALEEqleELEA 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 993 SLERADQEKAEMSTEICRLQNTVKDMQQaasllmLQGGCQATAgEEAEGDGAMSLLQQGEQLLEENgdvlisLQRAHEHA 1072
Cdd:COG4913 700 ELEELEEELDELKGEIGRLEKELEQAEE------ELDELQDRL-EAAEDLARLELRALLEERFAAA------LGDAVERE 766
|
570 580
....*....|....*....|..
gi 554506543 1073 VKENakMATEISRLQQRLKKLE 1094
Cdd:COG4913 767 LREN--LEERIDALRARLNRAE 786
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1498-1811 |
1.50e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 56.57 E-value: 1.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1498 KVELLRYESEKLQEENSI--LRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQTMVEKLKKQ------- 1568
Cdd:TIGR04523 123 EVELNKLEKQKKENKKNIdkFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKllklell 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1569 VSDLKIKNQ---QLDSENIELSQKNSQNKEELKTLNQRLAEM---LCQREEPGACTSEKWEQENASLKEELDHYKvQTST 1642
Cdd:TIGR04523 203 LSNLKKKIQknkSLESQISELKKQNNQLKDNIEKKQQEINEKtteISNTQTQLNQLKDEQNKIKKQLSEKQKELE-QNNK 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1643 LVSSLEAELSEVKLQTHVMEQE-----NLLLKDELERLKQLHRC--PDLSDFQQKMSSILSYNEKLLKEKEVLSEELKSC 1715
Cdd:TIGR04523 282 KIKELEKQLNQLKSEISDLNNQkeqdwNKELKSELKNQEKKLEEiqNQISQNNKIISQLNEQISQLKKELTNSESENSEK 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1716 ADKLAESsllEHRIATMKQEQTAWEEQSESLKSQLAVSQAKVQNLEDVLQNVNLQMAEIESDLQVTRQEKEALKQEVMSL 1795
Cdd:TIGR04523 362 QRELEEK---QNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKN 438
|
330
....*....|....*.
gi 554506543 1796 HRQLQNAIDKDWVSET 1811
Cdd:TIGR04523 439 NSEIKDLTNQDSVKEL 454
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1422-1678 |
2.41e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 2.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1422 EGSAALLGLQDKHLQQEATIAELELEKQKLQELTRNLRERVTALVRQKDApsQGQKEEELKAMMQDLQITCGEMQRKVEL 1501
Cdd:TIGR02168 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQI--LRERLANLERQLEELEAQLEELESKLDE 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1502 LRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQTMVEKLKKQVSDLKIKNQQLDS 1581
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1582 ENIELSQKNSQNKEELKTLNQRLAEMLCQREEPGACTSEKWEQENASLKEELDHYKVQTSTLVSSLEAELSEVKLQTHVM 1661
Cdd:TIGR02168 415 RRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL 494
|
250
....*....|....*..
gi 554506543 1662 EQENLLLKDELERLKQL 1678
Cdd:TIGR02168 495 ERLQENLEGFSEGVKAL 511
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
650-999 |
2.44e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 55.90 E-value: 2.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 650 EQAAMKQKYEQGVHTLEKRVSELRSEIA---DLEGQAAVLREAHHKA--------SCRHEEEKRQLQMAFDEEKAQLQEE 718
Cdd:pfam17380 297 EQERLRQEKEEKAREVERRRKLEEAEKArqaEMDRQAAIYAEQERMAmerereleRIRQEERKRELERIRQEEIAMEISR 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 719 LRqEHEReLQARLQQAAESFRQEREGlaqaawtEEKVRGLEQSYQEQLlsleekhalekeelreelsEHHRRELQEGREE 798
Cdd:pfam17380 377 MR-ELER-LQMERQQKNERVRQELEA-------ARKVKILEEERQRKI-------------------QQQKVEMEQIRAE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 799 METECNRRVSQIEAQCQADCEKVTEhceqtlqslEVRHRQELRDLLDQHLEERSQWEFEKDELTQECTDAQEQLKEALQR 878
Cdd:pfam17380 429 QEEARQREVRRLEEERAREMERVRL---------EEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEK 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 879 ERAtaaamKQEQEILERTYKdrlnilsteRKQLLQDLKDLQNASESQhgllsgqilELKRSQERELRDQGQALCQTGVSE 958
Cdd:pfam17380 500 ELE-----ERKQAMIEEERK---------RKLLEKEMEERQKAIYEE---------ERRREAEEERRKQQEMEERRRIQE 556
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 554506543 959 QLASQQLERLRVEHEQERREMTGKLAALESAhRASLERADQ 999
Cdd:pfam17380 557 QMRKATEERSRLEAMEREREMMRQIVESEKA-RAEYEATTP 596
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1462-1800 |
2.83e-07 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 56.06 E-value: 2.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1462 VTALVRQKDAPSQGQKEEELKAMMQDLQITCGEMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQ 1541
Cdd:PLN02939 33 VSCRARRRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAID 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1542 EELWQKIETIEQEkASIQ-----TMVEKLKKQVSDL-KIKNQQLDSENIELSQKNSQNKEeLKTLNQRLAEMLCQRE--E 1613
Cdd:PLN02939 113 NEQQTNSKDGEQL-SDFQledlvGMIQNAEKNILLLnQARLQALEDLEKILTEKEALQGK-INILEMRLSETDARIKlaA 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1614 PGACTSEKWEQENASLKEELDHYKVQTSTLVSSLEAELSEVKLqthvmeqENLLLKDELERLKQlhrcpDLSDFQQKMSS 1693
Cdd:PLN02939 191 QEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKE-------ENMLLKDDIQFLKA-----ELIEVAETEER 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1694 ILsyneKLLKEKEVLSEELKSCADKLAESSLLEHRIATMKQEqtAWEEQSESLKSQLAVSQAKVQNLEDVL-QNVNL--Q 1770
Cdd:PLN02939 259 VF----KLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYD--CWWEKVENLQDLLDRATNQVEKAALVLdQNQDLrdK 332
|
330 340 350
....*....|....*....|....*....|....*.
gi 554506543 1771 MAEIESDLQVTRQEK------EALKQEVMSLHRQLQ 1800
Cdd:PLN02939 333 VDKLEASLKEANVSKfssykvELLQQKLKLLEERLQ 368
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1438-1800 |
3.05e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 3.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1438 EATIAELELEKQKLQELTRNLRERVTALVRQKDAPSQGQKEEELKAMMQDLQITcgEMQRKVELLRYESEKLQEENSILR 1517
Cdd:TIGR02169 173 EKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGY--ELLKEKEALERQKEAIERQLASLE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1518 NEITTLNEEDSISNLKLEELNGSQEELWQKIETI-EQEKASIQTMVEKLKKQVSDLKiKNQQLDSENIELSQKNSQNKEE 1596
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLE-RSIAEKERELEDAEERLAKLEA 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1597 LKTLNQRLAEMLCQREEPGACTSEKWEQENASLKEELDhykvqtstlvsSLEAELSEVklqthvmEQENLLLKDELERLK 1676
Cdd:TIGR02169 330 EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELE-----------DLRAELEEV-------DKEFAETRDELKDYR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1677 QlhrcpDLSDFQQKMSSILSYNEKLLKEKEVLSEELkscadklaesSLLEHRIATMKQEQTAWEEQSESLKSQLAVSQAK 1756
Cdd:TIGR02169 392 E-----KLEKLKREINELKRELDRLQEELQRLSEEL----------ADLNAAIAGIEAKINELEEEKEDKALEIKKQEWK 456
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 554506543 1757 VQNLEDVLQNVNLQMAEIESDLQVTRQEKEALKQEVMSLHRQLQ 1800
Cdd:TIGR02169 457 LEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQAR 500
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
315-947 |
4.69e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 55.36 E-value: 4.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 315 QEEGIENSQEILKALDFSLDGNINLTELTLALENELLVTKNGIHQAALAsfKAEIRHLLERVDQVVREKEKLRSDLDKAE 394
Cdd:pfam02463 276 EEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK--KAEKELKKEKEEIEELEKELKELEIKREA 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 395 KLKSLMASEvddhhaAIERRNEYNLRKLDEEYKERIAALKNELRQEREQMlqqvgkqrvELEQEIQKAKTEENYIRDRLA 474
Cdd:pfam02463 354 EEEEEEELE------KLQEKLEQLEEELLAKKKLESERLSSAAKLKEEEL---------ELKSEEEKEAQLLLELARQLE 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 475 LSLKENNRLETELLENAEKLAEYESLTQKLQRSLENVLAEKFGDLDPSSAEFFLQEERLAQMRNEYEQQCRLLQDQVDEL 554
Cdd:pfam02463 419 DLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEER 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 555 QSELEEYQAQGRVLRLPLKNSLSEELDGHSGGIEpDQGPGSEECNPLNMSIEAELVIEQMKEQHHRDLCHLRLELEDKVR 634
Cdd:pfam02463 499 SQKESKARSGLKVLLALIKDGVGGRIISAHGRLG-DLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGA 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 635 HYEKQLDDTRVASEQEQAAMKQKYEQGVHTLEKRVSELRSEIA-------DLEGQAAVLREAHHKASCRHEEEKRQLQMA 707
Cdd:pfam02463 578 RKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKrakvvegILKDTELTKLKESAKAKESGLRKGVSLEEG 657
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 708 FDEEKAQLQEELRQEHERELQARLQQAAESFRQEREGLAQAAWTEEKVRGLEQSYQEQLLSLEEKHALEKEELREELSEH 787
Cdd:pfam02463 658 LAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEE 737
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 788 HRRELQEGREEMETECNRRVSQIEAQCQADCEKVTEHCEQTLQSLEVRHRQELRDLLDQHLEERSQWEFEKDELTQECTD 867
Cdd:pfam02463 738 LKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELL 817
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 868 AQEQLKEALQRERATAAAMKQEQEILERTYKDRLNILSTERKQLLQdLKDLQNASESQHGLLSGQILELKRSQERELRDQ 947
Cdd:pfam02463 818 EEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEI-TKEELLQELLLKEEELEEQKLKDELESKEEKEK 896
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
606-928 |
4.77e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 4.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 606 EAELVIEQMKEQHHRdlchLRLELEDKVRhYEKQLDDTRVASEQEQAAMKQKYEQGVHTLEKRVSELRSEIADLEGQAAV 685
Cdd:TIGR02169 188 RLDLIIDEKRQQLER----LRREREKAER-YQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 686 LREAHHKASCRHEEEKRQLQMAFDEEKAQLQEELrqeheRELQARLQQAAESFRQEREGLAQAAWTEEKVRGLEQSYQEQ 765
Cdd:TIGR02169 263 LEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKI-----GELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 766 LLSLEEKHALEKEElreelsehhRRELQEGREEMETECNRRVSQIEAQCQADCEKVTEHcEQTLQSLE--VRHRQELRDL 843
Cdd:TIGR02169 338 IEELEREIEEERKR---------RDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL-KDYREKLEklKREINELKRE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 844 LDQHLEERSQWEFEKDELTQECTDAQEQLKEALQRERATAAAMKQEQEILERTYKDrlniLSTERKQLLQDLKDLQNASE 923
Cdd:TIGR02169 408 LDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD----LSKYEQELYDLKEEYDRVEK 483
|
....*
gi 554506543 924 SQHGL 928
Cdd:TIGR02169 484 ELSKL 488
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
442-1023 |
8.96e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 54.46 E-value: 8.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 442 EQMLQQVGKQRVELEQEIQKAKTE-ENYIRDRLALSLKENNRLETELLENAEKlaEYESLTQKLQRSlenvlaeKFGDLD 520
Cdd:pfam12128 199 KSMIVAILEDDGVVPPKSRLNRQQvEHWIRDIQAIAGIMKIRPEFTKLQQEFN--TLESAELRLSHL-------HFGYKS 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 521 PSSAEFFLQEERlAQMRNEYEQQCRLLQDQVDELQSELEE---------YQAQGRVLRLPLKNSLSEELDGHSGGIEPDQ 591
Cdd:pfam12128 270 DETLIASRQEER-QETSAELNQLLRTLDDQWKEKRDELNGelsaadaavAKDRSELEALEDQHGAFLDADIETAAADQEQ 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 592 GPG-SEECNPLNMSIEAEL-VIEQMKEQHHRDLCHLRLELEDKVRHYEKQLDDTRVASEQEQAAMKQKYEQgvhtLEkrv 669
Cdd:pfam12128 349 LPSwQSELENLEERLKALTgKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQA----LE--- 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 670 SELRSEiadLEGQAAVLREAHHKASCRHEEEKRQLQMAFDEEKAQLQEELRQ---EHERE-----------LQARLQQAA 735
Cdd:pfam12128 422 SELREQ---LEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDeriERAREeqeaanaeverLQSELRQAR 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 736 ESFRQEREGLAQAAWTEEKVRGLEQSYQEQL----------LSLEEKHALEKEELREELSEHHRREL-------QEGREE 798
Cdd:pfam12128 499 KRRDQASEALRQASRRLEERQSALDELELQLfpqagtllhfLRKEAPDWEQSIGKVISPELLHRTDLdpevwdgSVGGEL 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 799 METECNRRVSQIEAQCQADCEkvtEHCEQTLQSLEvRHRQELRDLLDQHLEERSQWEFEKDELTQECTDAQEQLKEALQR 878
Cdd:pfam12128 579 NLYGVKLDLKRIDVPEWAASE---EELRERLDKAE-EALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLD 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 879 ERATAAAMKQEQEILERTYKDRLNILSTERKQLLQDLKDLQNASEsqhgllsgQILELKRSQERELRDQGQALCQTGVSE 958
Cdd:pfam12128 655 LRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQ--------AWLEEQKEQKREARTEKQAYWQVVEGA 726
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 554506543 959 QlaSQQLERLRVEHEQERREMTGKLAALESAHRASL-------ERADQEKAEMSTEICRLQNTVKDMQQAAS 1023
Cdd:pfam12128 727 L--DAQLALLKAAIAARRSGAKAELKALETWYKRDLaslgvdpDVIAKLKREIRTLERKIERIAVRRQEVLR 796
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
627-1322 |
9.07e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 9.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 627 LELEDKVRHYEKQLDDTRVASEQEQaamKQKYEQGVHTLEKRVSELRSEIADLEGQAAVLREAHHKAscrhEEEKRQLQM 706
Cdd:TIGR02168 216 KELKAELRELELALLVLRLEELREE---LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEL----EEEIEELQK 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 707 AFDEeKAQLQEELRQEhERELQARLQQAAESFRQEREGLAQAAWTEEKVRGLEQSYQEQLLSLEEKHALEKEELREELSE 786
Cdd:TIGR02168 289 ELYA-LANEISRLEQQ-KQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 787 HHRRE--LQEGREEMETEcNRRVSQIEAQcQADCEKVTEHCEQTLQSLEVRHRQELRDLLDQhleERSQWEFEKDELTQE 864
Cdd:TIGR02168 367 LEELEsrLEELEEQLETL-RSKVAQLELQ-IASLNNEIERLEARLERLEDRRERLQQEIEEL---LKKLEEAELKELQAE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 865 CTDAQEQLKEALQRERATAAAMKQEQEILE------RTYKDRLNILSTERKQLLQDLKDLQNASE---------SQHGLL 929
Cdd:TIGR02168 442 LEELEEELEELQEELERLEEALEELREELEeaeqalDAAERELAQLQARLDSLERLQENLEGFSEgvkallknqSGLSGI 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 930 SGQILELKRSQER-------ELRDQGQALCQTGVSEQLASQQLERlrvEHEQERREM----TGKLAALESAHRASLER-- 996
Cdd:TIGR02168 522 LGVLSELISVDEGyeaaieaALGGRLQAVVVENLNAAKKAIAFLK---QNELGRVTFlpldSIKGTEIQGNDREILKNie 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 997 ------ADQEKAEMSTEIC---RLQNT--VKDMQQAASLLMLQGGCQA---TAGEEAEGDGAMSllqqGEQLLEENGdvL 1062
Cdd:TIGR02168 599 gflgvaKDLVKFDPKLRKAlsyLLGGVlvVDDLDNALELAKKLRPGYRivtLDGDLVRPGGVIT----GGSAKTNSS--I 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1063 ISLQRAHEHAVKENAKMATEISRLQQRLKKLEpgsvisSCLEEGTSEISGSSREQVEPIMKQGPATKHFLSDLGDHE--A 1140
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELR------KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEqlE 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1141 RDLASTGTSSVQRQECKTEASEASLDCFSELENSEDTRTESW----DLKSQISQLREQLTVLRADCDRASERKQDLLFDI 1216
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEaqieQLKEELKALREALDELRAELTLLNEEAANLRERL 826
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1217 SVLKKKLKMLERLPEASsrykvlyEDAARENSCLQEELRLVETRYEESLDsnkELTAEVYRLQDEMKKMEEVMEtflSLE 1296
Cdd:TIGR02168 827 ESLERRIAATERRLEDL-------EEQIEELSEDIESLAAEIEELEELIE---ELESELEALLNERASLEEALA---LLR 893
|
730 740
....*....|....*....|....*.
gi 554506543 1297 KSYDEVKVENEELRALVLRLQGKMEK 1322
Cdd:TIGR02168 894 SELEELSEELRELESKRSELRRELEE 919
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1467-1795 |
1.13e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 1.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1467 RQKDAPSQGQKEEELKAMMQDLQITCGEMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQ 1546
Cdd:TIGR02169 665 GILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEE 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1547 KIETIEQEKASIQTMVEKLKKQVSDLKIKNQQLdsenielsqknsqnKEELKTLNQRLAEmlcqreepgactsEKWEQEN 1626
Cdd:TIGR02169 745 DLSSLEQEIENVKSELKELEARIEELEEDLHKL--------------EEALNDLEARLSH-------------SRIPEIQ 797
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1627 ASLkEELDHYKVQTSTLVSSLEAELSEVKLQTHVMEQENLLLKDELERLK--QLHRCPDLSDFQQKMSSILSYNEKLLKE 1704
Cdd:TIGR02169 798 AEL-SKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKeqIKSIEKEIENLNGKKEELEEELEELEAA 876
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1705 KEVLSEELKSCADKLAEsslLEHRIATMKQEQTAWEEQSESLKSQLAVSQAKVQNLEDVLQNVNLQMAEIES------DL 1778
Cdd:TIGR02169 877 LRDLESRLGDLKKERDE---LEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEipeeelSL 953
|
330
....*....|....*..
gi 554506543 1779 QVTRQEKEALKQEVMSL 1795
Cdd:TIGR02169 954 EDVQAELQRVEEEIRAL 970
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1207-1942 |
1.53e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 1.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1207 ERKQDLLFDisvLKKKLKMLERLPEASSRYKVLYEDaarenscLQE-ELRLVETRYEESLDSNKELTAEVYRLQDEMKKM 1285
Cdd:TIGR02168 189 DRLEDILNE---LERQLKSLERQAEKAERYKELKAE-------LRElELALLVLRLEELREELEELQEELKEAEEELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1286 EEVMETflsLEKSYDEVKVENEELRALVLRLQGKmekvlgraalQGDSYALWEAPSENLEVAsDEKMLELRQTPKEctpk 1365
Cdd:TIGR02168 259 TAELQE---LEEKLEELRLEVSELEEEIEELQKE----------LYALANEISRLEQQKQIL-RERLANLERQLEE---- 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1366 vvsmhhiIEECTQETQCCEQGSTKLLARIKAhEIAWFHRAIKTHPEKPSAQNRVIPEGSAALLGLQDKHLQQEATIAELE 1445
Cdd:TIGR02168 321 -------LEAQLEELESKLDELAEELAELEE-KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1446 LEKQKLQELTRNLRERVTALVRQKDAPSQGQKEEELK---AMMQDLQITCGEMQRKVELLRYESEKLQEENSILRNEITT 1522
Cdd:TIGR02168 393 LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKleeAELKELQAELEELEEELEELQEELERLEEALEELREELEE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1523 LNEEDSISNLKLEELNGSQEELwqkiETIEQEKASIQTMVEKLKKQVSDLKIKNQQLdSENIELSQKNSQNKEelKTLNQ 1602
Cdd:TIGR02168 473 AEQALDAAERELAQLQARLDSL----ERLQENLEGFSEGVKALLKNQSGLSGILGVL-SELISVDEGYEAAIE--AALGG 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1603 RLAEMLCQREEPgactsekWEQENASLKEElDHYKVQTSTLVSSLEAELSEVKLQTHVMEQENLLLKDELE--------- 1673
Cdd:TIGR02168 546 RLQAVVVENLNA-------AKKAIAFLKQN-ELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVkfdpklrka 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1674 ---RLKQLHRCPDLSDFQQkMSSILSYNEKL--LKEKEVLSEELKSCADKLAESSLLEHR--IATMKQEQTAWEEQSESL 1746
Cdd:TIGR02168 618 lsyLLGGVLVVDDLDNALE-LAKKLRPGYRIvtLDGDLVRPGGVITGGSAKTNSSILERRreIEELEEKIEELEEKIAEL 696
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1747 KSQLAVSQAKVQNLEDVLQNVNLQMAEIESDLQVTRQEKEALKQEVMSLHRQLQNAidkdwvsetapHLSGLRGQQRRLS 1826
Cdd:TIGR02168 697 EKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL-----------SKELTELEAEIEE 765
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1827 WDKLDHLMNEEPQLLCQESKRLQTVVQNTQADLTHSREKVRQLESNLLPTKhQKQLNQPCTVKSTEQEKLTLKRECEQSQ 1906
Cdd:TIGR02168 766 LEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN-EEAANLRERLESLERRIAATERRLEDLE 844
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 554506543 1907 KEQSPTSRKV----GQMGSLERGLETIHLENEGLKKKQMQ 1942
Cdd:TIGR02168 845 EQIEELSEDIeslaAEIEELEELIEELESELEALLNERAS 884
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
387-771 |
1.71e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 1.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 387 RSDLDKAEKLKSLMASEVDDHHAAIERrneynLRKLDEEYKERIAALKNELrQEREQMLQQVGKQRVELEQEIQKAKTEE 466
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAE-----LRKELEELEEELEQLRKEL-EELSRQISALRKDLARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 467 NYIRDRLALSLKENNRLETELLENAEKLAEYESLTQKLQRSLENVlaekfgdldpsSAEFFLQEERLAQMRNEYEQQCRL 546
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL-----------KEELKALREALDELRAELTLLNEE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 547 LQDQVDELQSELEEYQAQGRVLRlplknslseeldghsggiepdqgpgseecnplnmsiEAELVIEQMKEQhhrdLCHLR 626
Cdd:TIGR02168 819 AANLRERLESLERRIAATERRLE------------------------------------DLEEQIEELSED----IESLA 858
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 627 LELEDKVRHYEKQLDDTRVASEQeqaamKQKYEQGVHTLEKRVSELRSEIADLEGQAAVLREAHHKASCRHEEEKRQLQm 706
Cdd:TIGR02168 859 AEIEELEELIEELESELEALLNE-----RASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLE- 932
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 554506543 707 AFDEEKAQLQEELRQEHERELqarlqQAAESFRQEREGLAQAAwtEEKVRGLEQSYQE----QLLSLEE 771
Cdd:TIGR02168 933 GLEVRIDNLQERLSEEYSLTL-----EEAEALENKIEDDEEEA--RRRLKRLENKIKElgpvNLAAIEE 994
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
682-1088 |
2.49e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 53.03 E-value: 2.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 682 QAAVLREAHHKA-SCRHEEEKRQLQMAfdEEKAQLQEElrqehERELQARLQQAAESFRQEREGLAQAawteEKVrgleQ 760
Cdd:COG3096 286 RALELRRELFGArRQLAEEQYRLVEMA--RELEELSAR-----ESDLEQDYQAASDHLNLVQTALRQQ----EKI----E 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 761 SYQEQLLSLEEKHALEKEELREELSEHHRRELQEGREEMETECNRrvSQIEAQCQADCEKVTE--HCEQTLQSLE-VRHR 837
Cdd:COG3096 351 RYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLK--SQLADYQQALDVQQTRaiQYQQAVQALEkARAL 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 838 QELRDLLDQHLEER-SQWEFEKDELTQECTDAQEQLKEALQRERATAAAMKQEQEILERTykDRLNILSTERkQLLQDLK 916
Cdd:COG3096 429 CGLPDLTPENAEDYlAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEV--ERSQAWQTAR-ELLRRYR 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 917 DLQNASESQHGLlSGQILELKR--SQERELRDQGQALCQTGVSEQLASQQLERLRVEHEQERREMTGKLAAlESAHRASL 994
Cdd:COG3096 506 SQQALAQRLQQL-RAQLAELEQrlRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAE-AVEQRSEL 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 995 ERADQEKAEMSTEICRLQNTVKDMQQAASLLMLQGGCQATAGEEaegdgamsLLQQGEQLLEEngdvLISLQRAHEHAVK 1074
Cdd:COG3096 584 RQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQE--------VTAAMQQLLER----EREATVERDELAA 651
|
410
....*....|....
gi 554506543 1075 ENAKMATEISRLQQ 1088
Cdd:COG3096 652 RKQALESQIERLSQ 665
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1186-1603 |
6.46e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 6.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1186 SQISQLREQLTVLRADCDRASERKQDLLFDISVLKKKLKMLERLPEASSRYKVlyedaarenscLQEELRlvETRYEESL 1265
Cdd:TIGR02169 163 AGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQA-----------LLKEKR--EYEGYELL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1266 DSNKELTAEVYRLQDEMKkmeevmetflSLEKSYDEVKVENEELRALVLRLQGKMEKVlgraalqgdsyalweapSENLE 1345
Cdd:TIGR02169 230 KEKEALERQKEAIERQLA----------SLEEELEKLTEEISELEKRLEEIEQLLEEL-----------------NKKIK 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1346 VASDEKMLELRQTPKECTPKVVSMHHIIEECTQETQCCEQGSTKLLARIkaHEIAWFHRAIKTHpekpsaqnrvipegsa 1425
Cdd:TIGR02169 283 DLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEI--DKLLAEIEELERE---------------- 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1426 allgLQDKHLQQEATIAELELEKQKLQELTRNLRERVTALVRQKDAPSQGQKEEElkammqDLQITCGEMQRKVELLRYE 1505
Cdd:TIGR02169 345 ----IEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE------KLKREINELKRELDRLQEE 414
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1506 SEKLQEENSILRNEITTLNEedsisnlKLEELNGSQEELWQKIETIEQEKASIQTMVEKLKKQVSDLKIKNQQLDSENIE 1585
Cdd:TIGR02169 415 LQRLSEELADLNAAIAGIEA-------KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSK 487
|
410
....*....|....*...
gi 554506543 1586 LSQKNSQNKEELKTLNQR 1603
Cdd:TIGR02169 488 LQRELAEAEAQARASEER 505
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1169-1711 |
8.90e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.83 E-value: 8.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1169 SELENSEDTRTESWDLKSQISQLREQLTVLRADCDRASERKQDLLFDISVLKKKLKMLErlpEASSRYKVLYEDAarens 1248
Cdd:PRK03918 221 EELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELE---EKVKELKELKEKA----- 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1249 clqEELRLVETRYEESLDSNKELTAEVYRLQDEMKKMEEVMETFLSLEKSYDEVKVENEELRALVLRLQGKMEKVLGRAA 1328
Cdd:PRK03918 293 ---EEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKA 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1329 LQGDSYALwEAPSENLEVASDEKMLELRQTPKEctpkvvSMHHIIEECTQETQCCEQGSTKLLARIKaheiawfhrAIKT 1408
Cdd:PRK03918 370 KKEELERL-KKRLTGLTPEKLEKELEELEKAKE------EIEEEISKITARIGELKKEIKELKKAIE---------ELKK 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1409 HPEKPSAQNRVIPEGSAALLgLQDKHLQQEATIAELELEKQKLQELTRNLRERVTALVRQKDAPSQGQKEEELKAMMQDL 1488
Cdd:PRK03918 434 AKGKCPVCGRELTEEHRKEL-LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKL 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1489 Q-ITCGEMQRKVEllryESEKLQEENSILRNEITTLNEEDSisnlKLEELNGSQEELWQKIETIEQEKASIQTMVEKLK- 1566
Cdd:PRK03918 513 KkYNLEELEKKAE----EYEKLKEKLIKLKGEIKSLKKELE----KLEELKKKLAELEKKLDELEEELAELLKELEELGf 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1567 KQVSDLKIKNQQLDS---ENIELSQKNSQNKEELKTLnQRLAEMLCQREEPGACTSEKWEQENASLKEELDHYKVQT--- 1640
Cdd:PRK03918 585 ESVEELEERLKELEPfynEYLELKDAEKELEREEKEL-KKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEyee 663
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 554506543 1641 --------STLVSSLEAELSEVKLQTHVMEQENLLLKDELERLKQLHRcpDLSDFQQKMSSILSYNEKLLKEKEVLSEE 1711
Cdd:PRK03918 664 lreeylelSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKK--ELEKLEKALERVEELREKVKKYKALLKER 740
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
529-977 |
9.92e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.54 E-value: 9.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 529 QEERLAQMRNEYEQqCRLLQDQVDELQSELEEYQAQGRVLRLPLKnSLSEELDGHSGGIEPDQgpgseecnplnmsIEAE 608
Cdd:COG4717 76 LEEELKEAEEKEEE-YAELQEELEELEEELEELEAELEELREELE-KLEKLLQLLPLYQELEA-------------LEAE 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 609 LVIEQMKEQHHRDLCHLRLELEDKVRHYEKQLDDTRVASEQEQAAMKQKYEQGVHTLEKRVSELRSEIADLEGQAAVLRE 688
Cdd:COG4717 141 LAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQE 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 689 AHHKASCRHEEEKRQLQMAFDEEK-AQLQEELRQEHERELQARLQQAAESFRQEREGLAQA--------AWTEEKVRGLE 759
Cdd:COG4717 221 ELEELEEELEQLENELEAAALEERlKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLvlgllallFLLLAREKASL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 760 QSYQEQLLSLEEKHALEKEELREELSEHH------RRELQEGREEMETECNRRVSQIEAQCQADCEKVTEHCEQTLQSLE 833
Cdd:COG4717 301 GKEAEELQALPALEELEEEELEELLAALGlppdlsPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 834 VRHRQELRDLLDQHLEERsqwefekdELTQECTDAQEQLKEALQRERATAAAMKQEQ-EILERTYKDRLNILSTERKQLL 912
Cdd:COG4717 381 VEDEEELRAALEQAEEYQ--------ELKEELEELEEQLEELLGELEELLEALDEEElEEELEELEEELEELEEELEELR 452
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 554506543 913 QDLKDLQNASESqhgLLSGQILELKRSQERELRDQGQALCQTGVSEQLASQQLERLRVEHEQERR 977
Cdd:COG4717 453 EELAELEAELEQ---LEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERL 514
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
368-581 |
1.06e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 50.70 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 368 EIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKERIAALkNELRQEREQMLQQ 447
Cdd:PRK05771 44 RLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEI-SELENEIKELEQE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 448 vgKQRVE----LEQEIQKAKTEENYIrdRLALSLKENNRLETELLENAEKLAEYESLTQKL------QRSLENVLAEKFG 517
Cdd:PRK05771 123 --IERLEpwgnFDLDLSLLLGFKYVS--VFVGTVPEDKLEELKLESDVENVEYISTDKGYVyvvvvvLKELSDEVEEELK 198
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 554506543 518 DLDPSSAEFFlQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQGRVLRLPLKNSLSEELD 581
Cdd:PRK05771 199 KLGFERLELE-EEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELE 261
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
381-850 |
1.58e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.15 E-value: 1.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 381 REKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYnlrkldEEYKERIAALKNELRQEREQMLQQvgKQRVELEQEIQ 460
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEEL------EEELEELEAELEELREELEKLEKL--LQLLPLYQELE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 461 KAKTEENYIRDRLalslkenNRLETELLENAEKLAEYESLTQKLQRsLENVLAEKFGDLDPSSAEfflQEERLAQMRNEY 540
Cdd:COG4717 136 ALEAELAELPERL-------EELEERLEELRELEEELEELEAELAE-LQEELEELLEQLSLATEE---ELQDLAEELEEL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 541 EQQCRLLQDQVDELQSELEEYQAQGRVLRLPL-KNSLSEELDGHS------GGIEPDQGPGSEECNPLNMSIEAELVIEQ 613
Cdd:COG4717 205 QQRLAELEEELEEAQEELEELEEELEQLENELeAAALEERLKEARlllliaAALLALLGLGGSLLSLILTIAGVLFLVLG 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 614 MKEQHHRDLCHLRLELEDKVRHYEKQLDDTRVAsEQEQAAMKQKYEQGVHTLEKRVSELRSEIADLEGQAAVLREAHHKA 693
Cdd:COG4717 285 LLALLFLLLAREKASLGKEAEELQALPALEELE-EEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 694 SCRHEEEKRQ--LQMAFDEEKAQLQEELRQ-EHERELQARLQQAAESFRQEREGLAQ--AAWTEEKVRGLEQSYQEQLLS 768
Cdd:COG4717 364 QLEELEQEIAalLAEAGVEDEEELRAALEQaEEYQELKEELEELEEQLEELLGELEEllEALDEEELEEELEELEEELEE 443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 769 LEEKHALEKEELREELSEHHRRELQEGREEMETECNRRVSQIEAQCQADCEKVTehCEQTLQSLEVRHRQELRDLLDQHL 848
Cdd:COG4717 444 LEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEEWAALKL--ALELLEEAREEYREERLPPVLERA 521
|
..
gi 554506543 849 EE 850
Cdd:COG4717 522 SE 523
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1540-1827 |
1.95e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 1.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1540 SQEELWQKIETIEQEKASIQTMVEKLKKQVSDLKIKNQQLDSENIELSQKNSQNKEELKTLNQRLAEMlcqreepgacts 1619
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL------------ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1620 ekwEQENASLKEELDhykvqtstlvsSLEAELSEVKLQTHVMEQENlllkdeleRLKQLHRCPDLSDFQQKMSSILSYNE 1699
Cdd:COG4942 89 ---EKEIAELRAELE-----------AQKEELAELLRALYRLGRQP--------PLALLLSPEDFLDAVRRLQYLKYLAP 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1700 KLLKEKEVLSEELKscadklaessllehRIATMKQEQtawEEQSESLKSQLAVSQAKVQNLEDVLQNVNLQMAEIESDLQ 1779
Cdd:COG4942 147 ARREQAEELRADLA--------------ELAALRAEL---EAERAELEALLAELEEERAALEALKAERQKLLARLEKELA 209
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 554506543 1780 VTRQEKEALKQEVMSLHRQLQNAIDKDWVSETAPHLSGLRGQQRRLSW 1827
Cdd:COG4942 210 ELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKLPW 257
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
366-935 |
2.05e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 2.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 366 KAEIRHLLERVDQVVREKEKLRSDLDKAEKLKslmasEVDDHHAAIERRNEYNLRKLDEEYKERIAALKNElrQEREQML 445
Cdd:PTZ00121 1259 EARMAHFARRQAAIKAEEARKADELKKAEEKK-----KADEAKKAEEKKKADEAKKKAEEAKKADEAKKKA--EEAKKKA 1331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 446 QQVGKQRVELEQEIQKAKTEENYIRDRLALSLKENNRLETELLENAEKLAEYESLTQKLQRSLEnvlAEKFGDLDPSSAE 525
Cdd:PTZ00121 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADE---AKKKAEEDKKKAD 1408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 526 FFLQEERLAQMRNEYEQQCRLLQdQVDELQSELEEYQAQGRVLRLPLKNSLSEELDGHSggiepdqgpgsEECNplnmsi 605
Cdd:PTZ00121 1409 ELKKAAAAKKKADEAKKKAEEKK-KADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKA-----------EEAK------ 1470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 606 EAELVIEQMKEQHHRDlchlrlELEDKVRHYEKQLDDTRVASEQeqaamKQKYEQGVHTLEKRVSElRSEIADLEGQAAV 685
Cdd:PTZ00121 1471 KADEAKKKAEEAKKAD------EAKKKAEEAKKKADEAKKAAEA-----KKKADEAKKAEEAKKAD-EAKKAEEAKKADE 1538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 686 LREAHHKAscRHEEEKRQLQMAFDEEKAQLQEELRQEHERELQARLQQAAESFRQEREGLAQAAWTEEKVRGLEQSYQEQ 765
Cdd:PTZ00121 1539 AKKAEEKK--KADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAE 1616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 766 LLSLEEKHALEKEELREELSEHHRRELQEGREEMETECNRRVSQIEAQCQADCEKVTEHCEQTLQSLEVRHRQELRDLLD 845
Cdd:PTZ00121 1617 EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKK 1696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 846 QHLEERSQWEFEKDElTQECTDAQEQLKEALQRERATAAAMKQEQEilERTYKDRLNILSTERKQLLQDLKDLQNASESQ 925
Cdd:PTZ00121 1697 EAEEAKKAEELKKKE-AEEKKKAEELKKAEEENKIKAEEAKKEAEE--DKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEI 1773
|
570
....*....|
gi 554506543 926 HGLLSGQILE 935
Cdd:PTZ00121 1774 RKEKEAVIEE 1783
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1411-1664 |
2.09e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 2.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1411 EKPSAQNRVIPEGSAALLGLQDKHLQQEATIAELELEKQKLQELTRNLRERVTALVRQKDapsqGQKEEELKAMMQDLQI 1490
Cdd:TIGR02169 730 QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS----HSRIPEIQAELSKLEE 805
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1491 TCGEMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQTMVEKLKKQVS 1570
Cdd:TIGR02169 806 EVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG 885
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1571 DLKIKNQQLDSENIELSQKNSQNKEELKTLNQRLAEMLCQREEpgactsekweqenasLKEELDHYKVQTSTLVSSLEAE 1650
Cdd:TIGR02169 886 DLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEA---------------LEEELSEIEDPKGEDEEIPEEE 950
|
250
....*....|....
gi 554506543 1651 LSEVKLQTHVMEQE 1664
Cdd:TIGR02169 951 LSLEDVQAELQRVE 964
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
638-1322 |
2.21e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 2.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 638 KQLDDTRVASEQEQAAMKQKYEQGVHTLEKRvselRSEIADLEGQAAVLREAHHKASCRHEEEKRQLQMAFDEEKAQLQE 717
Cdd:PTZ00121 1104 KKTETGKAEEARKAEEAKKKAEDARKAEEAR----KAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAE 1179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 718 ELRQEHERELQARLQQAAESFRQEREGLAQAAWTEEKVRGLEQSYQEQLLSLEEKHALEKEELREELSEHHRRELQEGRE 797
Cdd:PTZ00121 1180 AARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEE 1259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 798 EMETECNRRVSQIEAQCQADCEKVTEhCEQTLQSLEVRHRQELR--DLLDQHLEERSQWEFEKDELTQECTDAQEQLKEA 875
Cdd:PTZ00121 1260 ARMAHFARRQAAIKAEEARKADELKK-AEEKKKADEAKKAEEKKkaDEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKA 1338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 876 LQRERATAAAMKQEQEILERTYKdrlnilsTERKQLLQDLKDLQNASESQHglLSGQILELKRSQERelrdQGQALCQTG 955
Cdd:PTZ00121 1339 EEAKKAAEAAKAEAEAAADEAEA-------AEEKAEAAEKKKEEAKKKADA--AKKKAEEKKKADEA----KKKAEEDKK 1405
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 956 VSEQLASQQLERLRVEHEQERREMTGKlaALESAHRASLERADQEKAEMSTEICRLQNTVKDMQQAASLLMLqggcQATA 1035
Cdd:PTZ00121 1406 KADELKKAAAAKKKADEAKKKAEEKKK--ADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEA----KKKA 1479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1036 GEEAEGDGAMSLLQQGEQLLEENGDVLISLQRAHEHAVKENAKMATEISRLQQRLKKLEpgsvisscLEEGTSEISGSSR 1115
Cdd:PTZ00121 1480 EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADE--------AKKAEEKKKADEL 1551
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1116 EQVEPIMKQGPATKHflsdlgdHEARDLASTGTSSVQRQECKTEASEASLDCFSELENSEDTrteswdLKSQISQLREQL 1195
Cdd:PTZ00121 1552 KKAEELKKAEEKKKA-------EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKK------MKAEEAKKAEEA 1618
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1196 TVLRADCDRASERKQDLLFDISVLKKKLKMLERLPEASSRYKVLYEDAARENsclQEELRLVETRYEESLDSNKELTAeV 1275
Cdd:PTZ00121 1619 KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA---EEDKKKAEEAKKAEEDEKKAAEA-L 1694
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 554506543 1276 YRLQDEMKKMEEVMETFLSLEKSYDEVKVENEELRALVLRLQGKMEK 1322
Cdd:PTZ00121 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE 1741
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1431-1798 |
3.08e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 3.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1431 QDKHLQQEATIAELELEKQKLQELTRNLRERVTALVRQKDAPSQGQKEEELKAMMQDLQITCGEMQRKVEL---LRYESE 1507
Cdd:COG4717 87 EEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEElreLEEELE 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1508 KLQEENSILRNEITTLNEEDSISNLK-LEELNGSQEELWQKIETIEQEKASIQTMVEKLKKQVSDLkiknqQLDSENIEL 1586
Cdd:COG4717 167 ELEAELAELQEELEELLEQLSLATEEeLQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQL-----ENELEAAAL 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1587 SQKNSQNKEELKTLNQRLA----------------------------EMLCQREEPGACTSEKWEQENASLKEELDHYKV 1638
Cdd:COG4717 242 EERLKEARLLLLIAAALLAllglggsllsliltiagvlflvlgllalLFLLLAREKASLGKEAEELQALPALEELEEEEL 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1639 QTSTLVSSLEAELSEVKLQTHVMEQENllLKDELERLKQLHRCPDLSDFQQKMSSILSYNE-----------KLLKEKEV 1707
Cdd:COG4717 322 EELLAALGLPPDLSPEELLELLDRIEE--LQELLREAEELEEELQLEELEQEIAALLAEAGvedeeelraalEQAEEYQE 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1708 LSEELKSCADKLAESSLLEHRIATMKQEqTAWEEQSESLKSQLAVSQAKVQNLEDVLQNVNLQMAEIESD--LQVTRQEK 1785
Cdd:COG4717 400 LKEELEELEEQLEELLGELEELLEALDE-EELEEELEELEEELEELEEELEELREELAELEAELEQLEEDgeLAELLQEL 478
|
410
....*....|...
gi 554506543 1786 EALKQEVMSLHRQ 1798
Cdd:COG4717 479 EELKAELRELAEE 491
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
307-505 |
4.32e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 4.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 307 VERILDTWQEEGIE-NSQEILKALDFsLDGNINLTELTL-ALENELLVTKNgihQAALASFKAEIRHLLERVDQVVREKE 384
Cdd:COG3206 154 ANALAEAYLEQNLElRREEARKALEF-LEEQLPELRKELeEAEAALEEFRQ---KNGLVDLSEEAKLLLQQLSELESQLA 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 385 KLRSDLDKAE----------KLKSLMASEVDDHHAAIERRNEYN-----LRKLDEEYKE---RIAALKNELRQEREQMLQ 446
Cdd:COG3206 230 EARAELAEAEarlaalraqlGSGPDALPELLQSPVIQQLRAQLAeleaeLAELSARYTPnhpDVIALRAQIAALRAQLQQ 309
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 554506543 447 QVGKQRVELEQEIQKAKTEENYIRDRLAlslkennRLETELLENAEKLAEYESLTQKLQ 505
Cdd:COG3206 310 EAQRILASLEAELEALQAREASLQAQLA-------QLEARLAELPELEAELRRLEREVE 361
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
401-1003 |
6.10e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.60 E-value: 6.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 401 ASEVDDHHAAIERRNEYNLRKLdEEYKERIAALKNELRQEREQMLQQVGKQRVELEQEIQKAKTEEN------YIRDRLA 474
Cdd:PTZ00121 1175 AKKAEAARKAEEVRKAEELRKA-EDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEeakkaeEERNNEE 1253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 475 LSLKENNRLETELLENAEKLAEYESLTQKLQRSLENVLAEKFGDLDP-SSAEFFLQEERLAQMRNEYEQQCRLLQDQVDE 553
Cdd:PTZ00121 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEkKKADEAKKKAEEAKKADEAKKKAEEAKKKADA 1333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 554 LQSELEEYQAQGRVLRLPLKNSlSEELDGHSGGIEPDQGPGSEEcnplnmSIEAELVIEQMKEQHHRDlchlrlELEDKV 633
Cdd:PTZ00121 1334 AKKKAEEAKKAAEAAKAEAEAA-ADEAEAAEEKAEAAEKKKEEA------KKKADAAKKKAEEKKKAD------EAKKKA 1400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 634 RHYEKQLDDTRVASEQEQAA--MKQKYEqgvhtlEKRVSElrseiadlegqaavlrEAHHKAscrhEEEKRQLQMAFDEE 711
Cdd:PTZ00121 1401 EEDKKKADELKKAAAAKKKAdeAKKKAE------EKKKAD----------------EAKKKA----EEAKKADEAKKKAE 1454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 712 KAQLQEELRQEHERELQA-RLQQAAESFRQEREGLAQAAWTEEKVRGLEQSYQEQLLSLEEKHALEKEELREELSEHHRR 790
Cdd:PTZ00121 1455 EAKKAEEAKKKAEEAKKAdEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK 1534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 791 ELQEGREEMETECNRRVSQIEAQCQADCEKVTEHC--EQTLQSLEVRHRQELRDLldqhleERSQWEFEKDELTQECTDA 868
Cdd:PTZ00121 1535 KADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAkkAEEDKNMALRKAEEAKKA------EEARIEEVMKLYEEEKKMK 1608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 869 QEQLKEAlQRERATAAAMKQEQEilERTYKDRLNILSTERKQLLQDLKDLQNASESQHGLLSGQILELKRSQE--RELRD 946
Cdd:PTZ00121 1609 AEEAKKA-EEAKIKAEELKKAEE--EKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEeaKKAEE 1685
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 554506543 947 QGQALCQTGVSEQLASQQLERLRVEHEQERREMTgKLAALESAHRASLERADQEKAE 1003
Cdd:PTZ00121 1686 DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE-ELKKAEEENKIKAEEAKKEAEE 1741
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1168-1770 |
8.75e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 47.77 E-value: 8.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1168 FSELENSEDTRTESWDLKsqisQLREQLTVLRADCDRASERKQDLLFDISV---LKKKLKMLERLpeassRYKVLYEDAA 1244
Cdd:COG5022 861 FSLLKKETIYLQSAQRVE----LAERQLQELKIDVKSISSLKLVNLELESEiieLKKSLSSDLIE-----NLEFKTELIA 931
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1245 RENSCLQEelrlveTRYEESLDSNKELTAEVYRLQDEMKKMEEVMETFLSLEKSYDEVKVENEELRALVLRLQGKM-EKV 1323
Cdd:COG5022 932 RLKKLLNN------IDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELaELS 1005
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1324 LGRAALQGDSYALWEAPSENLEVASDEKML----ELRQTPKEcTPKVVSMHHIIEECTQ----------------ETQCC 1383
Cdd:COG5022 1006 KQYGALQESTKQLKELPVEVAELQSASKIIssesTELSILKP-LQKLKGLLLLENNQLQarykalklrrenslldDKQLY 1084
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1384 EQGSTK-LLARIKAHEIawfhRAIKTHPEKPSAQNRVIPEGSAALLGLQDKHLQQEATIAELELEKQKLQ--ELTRNLRE 1460
Cdd:COG5022 1085 QLESTEnLLKTINVKDL----EVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSvlQLELDGLF 1160
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1461 RVTALVR--QKDAPSQGQKEEELKAMMQDL--QITCGEMQRKVELLryeSEKLQEENSILRNEITTLNEEDSISNLKLEE 1536
Cdd:COG5022 1161 WEANLEAlpSPPPFAALSEKRLYQSALYDEksKLSSSEVNDLKNEL---IALFSKIFSGWPRGDKLKKLISEGWVPTEYS 1237
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1537 LNGSQEELWQKIETIEQEKaSIQTMVEKLKKQVSDLKIKNQQLDSENIELSQknsqnkeELKTLNQRLAEMLCQREEPGA 1616
Cdd:COG5022 1238 TSLKGFNNLNKKFDTPASM-SNEKLLSLLNSIDNLLSSYKLEEEVLPATINS-------LLQYINVGLFNALRTKASSLR 1309
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1617 CTSEKWEQENASLKEELDHykvqtstlvsslEAELSEVKLQTHVMEQENL---LLKDELERLKQLHR-CPDLSDFQqkMS 1692
Cdd:COG5022 1310 WKSATEVNYNSEELDDWCR------------EFEISDVDEELEELIQAVKvlqLLKDDLNKLDELLDaCYSLNPAE--IQ 1375
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1693 SILSYNEKLLKEKEVLSEELK-----SCADKLAESSLLEHRIATMKQEQTAWEEQSESLKSQLAVSQAKVQNLEDVLQNV 1767
Cdd:COG5022 1376 NLKSRYDPADKENNLPKEILKkiealLIKQELQLSLEGKDETEVHLSEIFSEEKSLISLDRNSIYKEEVLSSLSALLTKE 1455
|
...
gi 554506543 1768 NLQ 1770
Cdd:COG5022 1456 KIA 1458
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1443-1825 |
1.03e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.42 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1443 ELELEKQKLQEL-TRNLRERVTALVRQKDAPSQGQKEEELKAMMQDLQITC-GEMQRKVELLRYESEKLQEENSIL---- 1516
Cdd:pfam15921 392 ELSLEKEQNKRLwDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECqGQMERQMAAIQGKNESLEKVSSLTaqle 471
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1517 --RNEITTLNEEDSISNLKLE-------ELNGSQEELWQKIETIEQEKASIQTMVEKLKKQVSDLKIKNQQLDSENIE-- 1585
Cdd:pfam15921 472 stKEMLRKVVEELTAKKMTLEssertvsDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTEce 551
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1586 -LSQKNSQNKEELKTLNQRLAEMLCQREEPGAcTSEKWEQENASLKEELDHYKVQTStlvsslEAELSEVKLQTHVMEQE 1664
Cdd:pfam15921 552 aLKLQMAEKDKVIEILRQQIENMTQLVGQHGR-TAGAMQVEKAQLEKEINDRRLELQ------EFKILKDKKDAKIRELE 624
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1665 NLLLKDELERLKQLH----RCPDLSDFQQKMSSIL-----SYNE--KLLKEKEVL-------SEELKSCADKL-----AE 1721
Cdd:pfam15921 625 ARVSDLELEKVKLVNagseRLRAVKDIKQERDQLLnevktSRNElnSLSEDYEVLkrnfrnkSEEMETTTNKLkmqlkSA 704
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1722 SSLLEHRIATMKQEQTA----------WEEQSESLKSQLAVSQAKVQNLEDVLQNVNlqmaeiesdlqvtrQEKEALKQE 1791
Cdd:pfam15921 705 QSELEQTRNTLKSMEGSdghamkvamgMQKQITAKRGQIDALQSKIQFLEEAMTNAN--------------KEKHFLKEE 770
|
410 420 430
....*....|....*....|....*....|....
gi 554506543 1792 VMSLHRQLQNAIDKDwvSETAPHLSGLRGQQRRL 1825
Cdd:pfam15921 771 KNKLSQELSTVATEK--NKMAGELEVLRSQERRL 802
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1258-1791 |
1.32e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.98 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1258 ETRYEESLDSNKELTAEVYRLQDEMKKMEEVMETFLSLEKSYDEVKVENEELRALVLRLQGKMEKVlgraalqgdsyalw 1337
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKL-------------- 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1338 eapsenlevasDEKMLELRQTPKEctpkvvsmhhiIEECTQETQCCEQGSTKLLARIKahEIAWFHRAIKTHPEKPSAQN 1417
Cdd:PRK03918 227 -----------EKEVKELEELKEE-----------IEELEKELESLEGSKRKLEEKIR--ELEERIEELKKEIEELEEKV 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1418 RVIPEgsaaLLGLQDKHLQQEATIAELELEKQKLQELTRNLRERVTALVRQ-KDAPSQGQKEEELKAMMQDLQITCGEMQ 1496
Cdd:PRK03918 283 KELKE----LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERiKELEEKEERLEELKKKLKELEKRLEELE 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1497 RKVELLRyESEKLQEENSILRNEITTLNEEDSISnlKLEELNGSQEELWQKIETIEQEKASIQTMVEKLKKQVSDLKIKN 1576
Cdd:PRK03918 359 ERHELYE-EAKAKKEELERLKKRLTGLTPEKLEK--ELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAK 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1577 QQLDSENIELSQKNSQN-----KEELKTLNQRLAEMLCQREEpgaCTSEKWEQENASLKEELDHYKVQTSTLVSSLEAEL 1651
Cdd:PRK03918 436 GKCPVCGRELTEEHRKElleeyTAELKRIEKELKEIEEKERK---LRKELRELEKVLKKESELIKLKELAEQLKELEEKL 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1652 SEVKLQThvMEQENLLLKDELERLKQLH-RCPDLSDFQQKMSSILSYNEKLLKEKEVLSEELKSCADKLAESSL-----L 1725
Cdd:PRK03918 513 KKYNLEE--LEKKAEEYEKLKEKLIKLKgEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFesveeL 590
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 554506543 1726 EHRIATMKQEQTAWEEQSESlKSQLAVSQAKVQNLEDVLQNVNLQMAEIESDLQVTRQEKEALKQE 1791
Cdd:PRK03918 591 EERLKELEPFYNEYLELKDA-EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK 655
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
359-560 |
1.79e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 359 QAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEyNLRKLdeeyKERIAALKNELR 438
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEA-ELAEL----EKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 439 QEREQMLQQVGKQ-----------------------RVELEQEIQKAKTEEnyiRDRLALSLKENNRLETELLENAEKLA 495
Cdd:COG4942 101 AQKEELAELLRALyrlgrqpplalllspedfldavrRLQYLKYLAPARREQ---AEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 554506543 496 EYESLTQKLQRSLENVLAEKFGDLDPSSAEFFLQEERLAQMRNEYEQqcrlLQDQVDELQSELEE 560
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE----LEALIARLEAEAAA 238
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
612-968 |
1.83e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.87 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 612 EQMKEQHHRdLCHLRLELEDKVRHYEKQLDDTRVASEQ---EQAAMKQKyeqgvHTLEKRVSELRSEIADLEGQAAVLRE 688
Cdd:COG3096 299 RQLAEEQYR-LVEMARELEELSARESDLEQDYQAASDHlnlVQTALRQQ-----EKIERYQEDLEELTERLEEQEEVVEE 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 689 AHHKAScRHEEEKRQLQMAFDEEKAQL---QEELRQEHERELQarLQQAAESFRQEREGLAQAAWTEEKVRGLEQSYQEQ 765
Cdd:COG3096 373 AAEQLA-EAEARLEAAEEEVDSLKSQLadyQQALDVQQTRAIQ--YQQAVQALEKARALCGLPDLTPENAEDYLAAFRAK 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 766 -------LLSLEEKHALEKEelreelsehHRRELQEGREEMET---ECNR----------------------RVSQIEAQ 813
Cdd:COG3096 450 eqqateeVLELEQKLSVADA---------ARRQFEKAYELVCKiagEVERsqawqtarellrryrsqqalaqRLQQLRAQ 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 814 cQADCEKVTEH---CEQTLQSLEVRHRQEL--RDLLDQHLEErsqWEFEKDELTQECTDAQEQLKEALQRERATAAAMKQ 888
Cdd:COG3096 521 -LAELEQRLRQqqnAERLLEEFCQRIGQQLdaAEELEELLAE---LEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKE 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 889 --EQEILERTYKDRLNILSTERKQLLQDLKDLQNASEsqhgllsgQILELKRSQERElRDQGQAlcqtgvSEQLASQQLE 966
Cdd:COG3096 597 laARAPAWLAAQDALERLREQSGEALADSQEVTAAMQ--------QLLEREREATVE-RDELAA------RKQALESQIE 661
|
..
gi 554506543 967 RL 968
Cdd:COG3096 662 RL 663
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1445-1634 |
2.72e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 2.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1445 ELEKQKLQELTRNLRERVTALVRQKDAPSQGQKEEELKAMMQDLQITCGEMQRKVELLRYESEKLQEENSILRNEITTLN 1524
Cdd:PTZ00121 1616 EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK 1695
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1525 EEDSISNlKLEELNGSQEELWQKIETIEQEKASIQTMVEKLKKQVSDLKIKNQQLDSENIELSQKNSQNKEELKTLNQrl 1604
Cdd:PTZ00121 1696 KEAEEAK-KAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEE-- 1772
|
170 180 190
....*....|....*....|....*....|
gi 554506543 1605 aemlcQREEPGACTSEKWEQENASLKEELD 1634
Cdd:PTZ00121 1773 -----IRKEKEAVIEEELDEEDEKRRMEVD 1797
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1441-1793 |
2.84e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.87 E-value: 2.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1441 IAELELEKQKLQELTRNLRERVTalvrqkdapsqgQKEEELKAMMQDLQITCGEMQRKVELLRYESEKLQEENSILRNEI 1520
Cdd:pfam05483 351 VTEFEATTCSLEELLRTEQQRLE------------KNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDE 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1521 TTLNEEDSISNLKlEELNGSQEELW-------QKIETIEQEKASIQTMVEKLKKQVSDLKIKNQQLDSENIELSQKNSQN 1593
Cdd:pfam05483 419 KLLDEKKQFEKIA-EELKGKEQELIfllqareKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKL 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1594 KEELKTLNQRLAEMLCQREEPgactsekweqenaslKEELDHYKVQTSTLVSSLEAelsevklqthvMEQENLLLKDELE 1673
Cdd:pfam05483 498 LLENKELTQEASDMTLELKKH---------------QEDIINCKKQEERMLKQIEN-----------LEEKEMNLRDELE 551
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1674 RLKQ---LHRCPDLSDFQQKMSSILSYNEKLLKEKEVLSEELKSCADKLAESSLLEHRIATMKQEQTAWEEQSESLKSQL 1750
Cdd:pfam05483 552 SVREefiQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQL 631
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 554506543 1751 AVSQAKVQNLEDVLQNVNLQMAEIESDLQVTRQEKEALKQEVM 1793
Cdd:pfam05483 632 NAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLL 674
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1430-1873 |
3.41e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 3.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1430 LQDKHLQQEATIAELELEKQKLQELTRNLRERVTALVRQKDApSQGQKEEELKAMMQDLQITCGEMQRKVEllryesekl 1509
Cdd:COG4913 293 LEAELEELRAELARLEAELERLEARLDALREELDELEAQIRG-NGGDRLEQLEREIERLERELEERERRRA--------- 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1510 qeensILRNEITTLNEEDSISNLKLEELngsQEELWQKIETIEQEKASIQTMVEKLKKQVSDLKIKNQQLDSENIELSQK 1589
Cdd:COG4913 363 -----RLEALLAALGLPLPASAEEFAAL---RAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERR 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1590 NSQNKEELKTLNQRLAEMLCQREE--PGAC-------TSEKWEQ---------------------------ENASLKEEL 1633
Cdd:COG4913 435 KSNIPARLLALRDALAEALGLDEAelPFVGelievrpEEERWRGaiervlggfaltllvppehyaaalrwvNRLHLRGRL 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1634 DHYKVQTST----LVSSLEAELSEvKLQTHVMEQENLLlKDELERLKQLHRCPDLSDFQQKMSSI----LSYNEKLLKEK 1705
Cdd:COG4913 515 VYERVRTGLpdpeRPRLDPDSLAG-KLDFKPHPFRAWL-EAELGRRFDYVCVDSPEELRRHPRAItragQVKGNGTRHEK 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1706 --------------------EVLSEELKSCADKLAEsslLEHRIATMKQEQTAWEEQSESLKSQLAVS---------QAK 1756
Cdd:COG4913 593 ddrrrirsryvlgfdnraklAALEAELAELEEELAE---AEERLEALEAELDALQERREALQRLAEYSwdeidvasaERE 669
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1757 VQNLEDVLQNVNL----------QMAEIESDLQVTRQEKEALKQEVMSLHRQLQNAidKDWVSETAPHLSGLRGQQRRLS 1826
Cdd:COG4913 670 IAELEAELERLDAssddlaaleeQLEELEAELEELEEELDELKGEIGRLEKELEQA--EEELDELQDRLEAAEDLARLEL 747
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 554506543 1827 WDKLDHLMNEEPQllcqeSKRLQTVVQNTQADLTHSREKVRQLESNL 1873
Cdd:COG4913 748 RALLEERFAAALG-----DAVERELRENLEERIDALRARLNRAEEEL 789
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1485-1812 |
4.42e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.89 E-value: 4.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1485 MQDLQITCGEMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQTMVEK 1564
Cdd:COG4372 40 LDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEE 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1565 LKKQVSDLKIKNQQLDSENIELSQKNSQNKEELKTLNQRLAEMlcqREEPGACTSEKWEQENASLKEELDHYKVQTSTLV 1644
Cdd:COG4372 120 LQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESL---QEELAALEQELQALSEAEAEQALDELLKEANRNA 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1645 SSLEAELSEVKLQthvmEQENLLLKDELERLKQLHRCPDLSDFQQKMSSILSYNEKLLKEKEVLSEELKSCADKLAESSL 1724
Cdd:COG4372 197 EKEEELAEAEKLI----ESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKD 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1725 LEHRIATMKQEQTAWEEQSESLKSQLAVSQAKVQNLEDVLQNVNLQMAEIESDLQVTRQEKEALKQEVMSLHRQLQNAID 1804
Cdd:COG4372 273 TEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLLD 352
|
....*...
gi 554506543 1805 KDWVSETA 1812
Cdd:COG4372 353 NDVLELLS 360
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
837-1025 |
4.85e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 4.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 837 RQELRDLLDQHLEERSQWEFEKDELTQECTDAQEQLKEALQRERATAAAMKQEQEILERTyKDRLNILSTERKQLLQDLK 916
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL-EKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 917 DL-------------------QNASESQHGL-LSGQILELKRSQERELRDQGQALCQTGVSEQLASQQLERLRVEHEQER 976
Cdd:COG4942 108 ELlralyrlgrqpplalllspEDFLDAVRRLqYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEER 187
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 554506543 977 REmtgkLAALESAHRASLERADQEKAEMSTEICRLQNTVKDMQQAASLL 1025
Cdd:COG4942 188 AA----LEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
368-929 |
4.95e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.42 E-value: 4.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 368 EIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRneynlrkldEEYKERIAALKNELRQEREQmLQQ 447
Cdd:PRK02224 200 EEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEH---------EERREELETLEAEIEDLRET-IAE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 448 VGKQRVELEQEIQKAKTEENYIRDRLALSLKENNRLETELLENAEKLAEYESLTQKLQRSLENVlaekfgdlDPSSAEFF 527
Cdd:PRK02224 270 TEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEEC--------RVAAQAHN 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 528 LQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQGRVLRLPLKnSLSEELDGHSGGIE--PDQGPGSEEcnplnmsi 605
Cdd:PRK02224 342 EEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIE-ELEEEIEELRERFGdaPVDLGNAED-------- 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 606 EAELVIEQMKEQHHR--DLCHLRLELEDKVRHYEKQLDDTRvASEQEQAAMKQKYEQGVHTLEKRVSELRSEIADLEGQA 683
Cdd:PRK02224 413 FLEELREERDELREReaELEATLRTARERVEEAEALLEAGK-CPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEV 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 684 AVLREAHHKASCRHEEEKRQLQMafdEEKAQLQEELRQEHERELQARLQQAAESFRQEREGLAQAAWTEEKVRGLEQSYQ 763
Cdd:PRK02224 492 EEVEERLERAEDLVEAEDRIERL---EERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAE 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 764 EQLLSLEEKHALEKEELREELSEHHRRELQEGREEMETECNRRVSQIEAQCQADCEKvtehcEQTLQSLEVRHRQELRDL 843
Cdd:PRK02224 569 EAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDER-----RERLAEKRERKRELEAEF 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 844 LDQHLEERSQWEFEKDELTQECTDAQEQLKEALQRERATAAAMKQEQEILErTYKDRLNILStERKQLLQDLKDLQNASE 923
Cdd:PRK02224 644 DEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELE-ELRERREALE-NRVEALEALYDEAEELE 721
|
....*.
gi 554506543 924 SQHGLL 929
Cdd:PRK02224 722 SMYGDL 727
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
438-877 |
6.57e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.94 E-value: 6.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 438 RQEREQMLQQVGKQRVELeQEIQKAKTEENYIRDRLALSLKENNRLETELLenaeklAEYESLTQKLQRSLENV-LAEKF 516
Cdd:COG3096 277 ANERRELSERALELRREL-FGARRQLAEEQYRLVEMARELEELSARESDLE------QDYQAASDHLNLVQTALrQQEKI 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 517 G--DLDPSSAEFFLQE-----ERLAQMRNEYEQQCRLLQDQVDELQSELEEYQaQGrvlrlplknslseeLDG-HSGGIE 588
Cdd:COG3096 350 EryQEDLEELTERLEEqeevvEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQ-QA--------------LDVqQTRAIQ 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 589 PDQGPGSEEcNPLNMSIEAELVIEQMKEQHHrdlchlrlELEDKvrhyEKQLDDTRVASEQEQA---AMKQKYEQGVHTL 665
Cdd:COG3096 415 YQQAVQALE-KARALCGLPDLTPENAEDYLA--------AFRAK----EQQATEEVLELEQKLSvadAARRQFEKAYELV 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 666 EKRVSElrseiadlegqaaVLREAHHKASCRHEEEKRQLQMAfdeekAQLQEELRQEHeRELQARLQQAAESFRQERE-- 743
Cdd:COG3096 482 CKIAGE-------------VERSQAWQTARELLRRYRSQQAL-----AQRLQQLRAQL-AELEQRLRQQQNAERLLEEfc 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 744 -GLAQAAWTEEKVRGLEQSYQEQLLSLEEKHALEKEELREelsehHRRELQEGREEMETECNRRVSQIEAQCQAdcEKVT 822
Cdd:COG3096 543 qRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSE-----LRQQLEQLRARIKELAARAPAWLAAQDAL--ERLR 615
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 554506543 823 EHCEQTLQSlevrhRQELRDLLDQHLEERSQWEFEKDELTQECTDAQEQLKEALQ 877
Cdd:COG3096 616 EQSGEALAD-----SQEVTAAMQQLLEREREATVERDELAARKQALESQIERLSQ 665
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1218-1800 |
6.90e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 44.89 E-value: 6.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1218 VLKKKLKMLErlPEASSrYKVLYEDAARENSCLQE---ELRLVETRYEESLDSNKELTAEVYRLQDEMKKMEEVMETFLS 1294
Cdd:PRK01156 170 KLKDVIDMLR--AEISN-IDYLEEKLKSSNLELENikkQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSS 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1295 LEksyDEVKVENEELRALVLRLQGKMEKVlgraalqgdsyalweapsenlevaSDEKMLELRQTPKECTPKVVSMHHIIE 1374
Cdd:PRK01156 247 LE---DMKNRYESEIKTAESDLSMELEKN------------------------NYYKELEERHMKIINDPVYKNRNYIND 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1375 ECTQETQCceQGSTKLLARIKAhEIAWFHRAIKTHPEKPSAQNRVIPEGSA------ALLGLQDKHLQQEATIAELELEK 1448
Cdd:PRK01156 300 YFKYKNDI--ENKKQILSNIDA-EINKYHAIIKKLSVLQKDYNDYIKKKSRyddlnnQILELEGYEMDYNSYLKSIESLK 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1449 QKLQELTRNLR----ERVTALVRQKDAPSQGQKE-EELKAMMQDLQITCGEMQRKVELLRYESEKLQEENSILRNEI--- 1520
Cdd:PRK01156 377 KKIEEYSKNIErmsaFISEILKIQEIDPDAIKKElNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSvcp 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1521 ---TTLNEEDS--ISNLKLEELNGSQEElwqkIETIEQEKASIQTMVEKLKKQVSDLKIKN-QQLDSENIELSQKNSQNK 1594
Cdd:PRK01156 457 vcgTTLGEEKSnhIINHYNEKKSRLEEK----IREIEIEVKDIDEKIVDLKKRKEYLESEEiNKSINEYNKIESARADLE 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1595 EELKTLNQRLAEMLCQREEPGACTSEKWEQENASLKEELDHYKVQTSTLVSSLEAELSEVKLQthvmeqenllLKDELER 1674
Cdd:PRK01156 533 DIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQ----------LNDLESR 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1675 LKQLH-RCPDLSDFQQKMSSILSYNEKLLKEKEVLSEELKSCADKLAES-SLLEHRIATMKQEQTAWEEqsesLKSQLAV 1752
Cdd:PRK01156 603 LQEIEiGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKiDNYKKQIAEIDSIIPDLKE----ITSRIND 678
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 554506543 1753 SQAKVQNLEDVLQNVNLQMAEIESDLQVTRQEKEALKQEVMSLHRQLQ 1800
Cdd:PRK01156 679 IEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLE 726
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1725-1909 |
7.28e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 7.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1725 LEHRIATMKQEQTAWEEQSESLKSQLAVSQAKVQNLEDVLQNVNLQMAEIESDLQVTRQEKEALKQEVMSLHRQLQNAID 1804
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLR 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1805 KDWVSETAPHLSGLRGQQ------RRLSWdkLDHLMN------EEPQLLCQESKRLQTVVQNTQADLTHSREKVRQLESN 1872
Cdd:COG4942 112 ALYRLGRQPPLALLLSPEdfldavRRLQY--LKYLAParreqaEELRADLAELAALRAELEAERAELEALLAELEEERAA 189
|
170 180 190
....*....|....*....|....*....|....*..
gi 554506543 1873 LLPTKHQKQLnqpcTVKSTEQEKLTLKRECEQSQKEQ 1909
Cdd:COG4942 190 LEALKAERQK----LLARLEKELAELAAELAELQQEA 222
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
810-1299 |
7.49e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 44.68 E-value: 7.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 810 IEAQCQADCEKVTEHCEQTLQSLEVRHRQ---ELRDLLDQHLEERSQWEFEKDELTQECTDAQEQLKEALQRERATAAAM 886
Cdd:COG5022 940 IDLEEGPSIEYVKLPELNKLHEVESKLKEtseEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLK 1019
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 887 KQEQEILERTYKDRLNILSTERKQLLQDLKDLQNASESQHGLLSGQILELKRSQERELRDQGQaLCQTGVSEQLASqqle 966
Cdd:COG5022 1020 ELPVEVAELQSASKIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQ-LYQLESTENLLK---- 1094
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 967 RLRVEHEQERREMTGKLAALESAHRASLERADQEKaEMSTEICRLQNTVKDMQQAASLLMLQGGC---QATAGEEAEGDG 1043
Cdd:COG5022 1095 TINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQ-EISKFLSQLVNTLEPVFQKLSVLQLELDGlfwEANLEALPSPPP 1173
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1044 AMSLLQQ---GEQLLEENGDVLISLQRAHEHAVKENAKMATEISRLQQRLKKLE-PGSVISSCLEEGTSEISGSSREQVE 1119
Cdd:COG5022 1174 FAALSEKrlyQSALYDEKSKLSSSEVNDLKNELIALFSKIFSGWPRGDKLKKLIsEGWVPTEYSTSLKGFNNLNKKFDTP 1253
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1120 PIMKQgPATKHFLSDL-GDHEARDLASTGTSSVQRQECKT----EASEASLDCFS-ELENSED-----TRTESWDLKSQI 1188
Cdd:COG5022 1254 ASMSN-EKLLSLLNSIdNLLSSYKLEEEVLPATINSLLQYinvgLFNALRTKASSlRWKSATEvnynsEELDDWCREFEI 1332
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1189 SQLREQLTVLRadcdRASERKQDLLFDISVLKKKLKMLERL-PEASSRYKVLYEDAARENSCLQEELRLVET-RYEESLD 1266
Cdd:COG5022 1333 SDVDEELEELI----QAVKVLQLLKDDLNKLDELLDACYSLnPAEIQNLKSRYDPADKENNLPKEILKKIEAlLIKQELQ 1408
|
490 500 510
....*....|....*....|....*....|...
gi 554506543 1267 SNKELTAEVYRLQDEMKKMEEVMetfLSLEKSY 1299
Cdd:COG5022 1409 LSLEGKDETEVHLSEIFSEEKSL---ISLDRNS 1438
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
403-1148 |
8.42e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 8.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 403 EVDDHHAAIERRNEYNLRKLDEEYKERIAALKNELRQEREQMLQQ---VGKQRVELEQEIQKAKTEENY---IRDRLALS 476
Cdd:pfam15921 60 ELDSPRKIIAYPGKEHIERVLEEYSHQVKDLQRRLNESNELHEKQkfyLRQSVIDLQTKLQEMQMERDAmadIRRRESQS 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 477 LKE-NNRLETEL--LENAEKLAE---YESLTQ-----KLQRSLENVLAEKFG---DLDPSSAEFFLQEERLAQMR----- 537
Cdd:pfam15921 140 QEDlRNQLQNTVheLEAAKCLKEdmlEDSNTQieqlrKMMLSHEGVLQEIRSilvDFEEASGKKIYEHDSMSTMHfrslg 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 538 NEYEQQCRLLQDQVDELQSELEEYQAQGRVLRLPLKNSLSEELDGHSGGIEP------------DQGPGSEECNPLNMSI 605
Cdd:pfam15921 220 SAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQliseheveitglTEKASSARSQANSIQS 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 606 EAELVIEQMKEQHHRDLCHLRlELEDKVRHYEKQLDDTrvaseqeqaamKQKYEQGVHTLEKRVSELRSEIADLegqaav 685
Cdd:pfam15921 300 QLEIIQEQARNQNSMYMRQLS-DLESTVSQLRSELREA-----------KRMYEDKIEELEKQLVLANSELTEA------ 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 686 lreahhkascrhEEEKRQLQMAFDEEKAQLQEELRQEHERELQARLQQAAESFRQEREglaqaAWTEEKVRGLEQSYQEQ 765
Cdd:pfam15921 362 ------------RTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRD-----TGNSITIDHLRRELDDR 424
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 766 LLSLEEKHALEKEELREELSEHHRR--ELQEGREEMEtecnrRVSQIEAQCQADCE---KVTEHCEQTLQSLEVRHRQeL 840
Cdd:pfam15921 425 NMEVQRLEALLKAMKSECQGQMERQmaAIQGKNESLE-----KVSSLTAQLESTKEmlrKVVEELTAKKMTLESSERT-V 498
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 841 RDLLDQHLEERSQWEFEKDELTQECTDAQEQLKEaLQRerataaaMKQEQEILE--RTYKDRLNILSTERKQLLQDLK-D 917
Cdd:pfam15921 499 SDLTASLQEKERAIEATNAEITKLRSRVDLKLQE-LQH-------LKNEGDHLRnvQTECEALKLQMAEKDKVIEILRqQ 570
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 918 LQNASE--SQHGLLSGQILELKRSQERELRDQgqalcqtgvseQLASQQLERLRVEHEQERREMTGKLAALE-------- 987
Cdd:pfam15921 571 IENMTQlvGQHGRTAGAMQVEKAQLEKEINDR-----------RLELQEFKILKDKKDAKIRELEARVSDLElekvklvn 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 988 --SAHRASLERADQEKAEMSTEICRLQNTVKDMQQAASLLMLQGGCQATAGEEAEGDGAMSlLQQGEQLLEENGDVLISL 1065
Cdd:pfam15921 640 agSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQ-LKSAQSELEQTRNTLKSM 718
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1066 QRAHEHAVKENAKMATEISRLQQRLKKLEpgsvisscleegtseisgSSREQVEPIMKQGPATKHFLSDLGDHEARDLAS 1145
Cdd:pfam15921 719 EGSDGHAMKVAMGMQKQITAKRGQIDALQ------------------SKIQFLEEAMTNANKEKHFLKEEKNKLSQELST 780
|
...
gi 554506543 1146 TGT 1148
Cdd:pfam15921 781 VAT 783
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
339-1002 |
9.18e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.56 E-value: 9.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 339 LTELTLALENELlvtknGIHQAALASFKAEIRHLLERVDQVVRE--KEKLRSDLDKAEKLKSLMASEV--DDHHAAIERR 414
Cdd:PRK04863 454 ATEELLSLEQKL-----SVAQAAHSQFEQAYQLVRKIAGEVSRSeaWDVARELLRRLREQRHLAEQLQqlRMRLSELEQR 528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 415 --NEYNLRKLDEEYKERI------AALKNELRQEREQMLQ-------QVGKQRVELEQEIQKAKTEENYIRDRLALSLKE 479
Cdd:PRK04863 529 lrQQQRAERLLAEFCKRLgknlddEDELEQLQEELEARLEslsesvsEARERRMALRQQLEQLQARIQRLAARAPAWLAA 608
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 480 NNRLETELLENAEKLAEYESLTQKLQRSLEnvlaekfgdldpssaefflQEERLAQMRNEYEQQCRLLQDQVDELQ---- 555
Cdd:PRK04863 609 QDALARLREQSGEEFEDSQDVTEYMQQLLE-------------------RERELTVERDELAARKQALDEEIERLSqpgg 669
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 556 SELEEYQAQ----GRVLrlplknsLSEELDGhsggIEPDQGPG-SEECNPLNMSI---EAELVIEQMKEQhhrDLCHLRL 627
Cdd:PRK04863 670 SEDPRLNALaerfGGVL-------LSEIYDD----VSLEDAPYfSALYGPARHAIvvpDLSDAAEQLAGL---EDCPEDL 735
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 628 ELedkVRHYEKQLDDTRVASEQEQAAMKQKYEQgvhtLEKRVSELRSE-----------IADLEGQAAVLREAHHKASCR 696
Cdd:PRK04863 736 YL---IEGDPDSFDDSVFSVEELEKAVVVKIAD----RQWRYSRFPEVplfgraarekrIEQLRAEREELAERYATLSFD 808
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 697 HEEEKRQLQ-----------MAFDEEKAQLQEELRQEHeRELQARLQQAAESFRQEREGLAQAawtEEKVRGLEQSYQEQ 765
Cdd:PRK04863 809 VQKLQRLHQafsrfigshlaVAFEADPEAELRQLNRRR-VELERALADHESQEQQQRSQLEQA---KEGLSALNRLLPRL 884
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 766 LLSLEEKHALEKeelreelsehhrRELQEGREEME------TECNRRVSQIEAQC---QADCEKVTEHCEQTLQSLEVRH 836
Cdd:PRK04863 885 NLLADETLADRV------------EEIREQLDEAEeakrfvQQHGNALAQLEPIVsvlQSDPEQFEQLKQDYQQAQQTQR 952
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 837 RQELR-DLLDQHLEERSQWEFEKD-ELTQECTDAQEQLKEALQRERATAAAMKQEQeileRTYKDRLnilsTERKQLLQD 914
Cdd:PRK04863 953 DAKQQaFALTEVVQRRAHFSYEDAaEMLAKNSDLNEKLRQRLEQAEQERTRAREQL----RQAQAQL----AQYNQVLAS 1024
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 915 LKDLQNASESQHGLLsgqilelkrsqERELRDQGQALCQtGVSEQLASQ----------------QLERLRVEHEQERRE 978
Cdd:PRK04863 1025 LKSSYDAKRQMLQEL-----------KQELQDLGVPADS-GAEERARARrdelharlsanrsrrnQLEKQLTFCEAEMDN 1092
|
730 740
....*....|....*....|....
gi 554506543 979 MTGKLAALESAHRASLERADQEKA 1002
Cdd:PRK04863 1093 LTKKLRKLERDYHEMREQVVNAKA 1116
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
374-900 |
1.04e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.36 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 374 ERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKERIAALKNELRQEREQMLQQVGKQRV 453
Cdd:PTZ00121 1290 KKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAA 1369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 454 ELEQEIQKAKTEENYIRDRLALSLKENNRLETELLENAEKLAEYESLTQKLQRSLENVLAEKFGDLDPSSAEfflqEERL 533
Cdd:PTZ00121 1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE----EAKK 1445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 534 AQMRNEYEQQCRllqdQVDELQSELEEYQAQGRVLRLPLKNSLSEELDGHSGGIEPDQGPGSEECNPLNMSIEAELVIEQ 613
Cdd:PTZ00121 1446 ADEAKKKAEEAK----KAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEA 1521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 614 MKEQHHRDLCHLRLELEDKVRHYEKQLDDTRVASEQEQAAMKQKYEQGVHTLEKRVSELRSeiADLEGQAAVLREAHHKA 693
Cdd:PTZ00121 1522 KKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK--AEEAKKAEEARIEEVMK 1599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 694 SCRHEEEKRQLQMAFDEEKAQLQEELRQEHE--------RELQARLQQAAESFRQEREglaqaawtEEKVRgleqsyQEQ 765
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAKIKAEELKKAEEekkkveqlKKKEAEEKKKAEELKKAEE--------ENKIK------AAE 1665
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 766 LLSLEEKHALEKEELREELSEHHRRELQEGREEMETECNRRVSQIEAQCQADCEKVTEHCEQTLQSLEVRHRQELRDllD 845
Cdd:PTZ00121 1666 EAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED--K 1743
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 554506543 846 QHLEERSQWEFEKDELTQECTDAQEQLKEALQRERATAAAMKQEQEILERTYKDR 900
Cdd:PTZ00121 1744 KKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
446-765 |
1.07e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.96 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 446 QQVGKQRVELEQEIQKAKTEENYIRDRLALSLKENNRlETELLENAEKLAEYESLTQKLQRSLENVLaekfgdldpssae 525
Cdd:pfam17380 289 QQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKAR-QAEMDRQAAIYAEQERMAMERERELERIR------------- 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 526 fflQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQGRVLRLPLKNSLSEELDGHSGGIEPDQGPGSEECNPLNMSI 605
Cdd:pfam17380 355 ---QEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEE 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 606 EAELVIEQMKEQHHRDLCHLRLEledkvrHYEKQLDDTRVASEQEQAAMKQKYEQGVHTLEKRVSELRSEIADLEGQA-- 683
Cdd:pfam17380 432 ARQREVRRLEEERAREMERVRLE------EQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEErk 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 684 -AVLREAHHKASCRHEEEKRQLQMAFDEEKAQLQEELRQEHERELQARLQQAAESFRQEREGLAQAAWTEEKVRGLEQSY 762
Cdd:pfam17380 506 qAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESE 585
|
...
gi 554506543 763 QEQ 765
Cdd:pfam17380 586 KAR 588
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1162-1673 |
1.29e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.94 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1162 EASLDCFSELEnsEDTRTESWDLKSQISQ---LREQLTVLRADCDRASERKQDLLFDISVLKK--------KLKMLERLP 1230
Cdd:pfam05483 264 EESRDKANQLE--EKTKLQDENLKELIEKkdhLTKELEDIKMSLQRSMSTQKALEEDLQIATKticqlteeKEAQMEELN 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1231 EASSRYKVLYEDAARENSCLQEELRLVETRYEESLDSNKELTAEVYRLQDEMKKMEevmetflsleKSYDEVKVENEELR 1310
Cdd:pfam05483 342 KAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMT----------KFKNNKEVELEELK 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1311 alvlrlqgkmeKVLGRAALQGDSYALWEAPSENLEVASDEKMLELRQTPKECtpkvvsmhHIIEECTQETQCCEQGSTKL 1390
Cdd:pfam05483 412 -----------KILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEI--------HDLEIQLTAIKTSEEHYLKE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1391 LarikaheiawfhRAIKTHPEKPSAQNRVIPEGSAALLgLQDKHLQQEATIAELELEKQK-------------------L 1451
Cdd:pfam05483 473 V------------EDLKTELEKEKLKNIELTAHCDKLL-LENKELTQEASDMTLELKKHQediinckkqeermlkqienL 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1452 QELTRNLRERVTALVR----------------QKDAPSQGQKEEELKAMMQDLQITCGEMQRKVELLRYESEKLQEENSI 1515
Cdd:pfam05483 540 EEKEMNLRDELESVREefiqkgdevkckldksEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKA 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1516 LRNEITTLNEEDSISNLKLEELNGSQEELWQKIEtieqekasiqTMVEKLKKQVSDLKIKNQQLDSE----NIELSQKNS 1591
Cdd:pfam05483 620 LKKKGSAENKQLNAYEIKVNKLELELASAKQKFE----------EIIDNYQKEIEDKKISEEKLLEEvekaKAIADEAVK 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1592 QNKEELKTLNQRLAEMLCQREEPGACTSEKWEQENASL------KEELDHYKVQTSTLVSSLEAELSEVKLQTHVMEQEN 1665
Cdd:pfam05483 690 LQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELglyknkEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEK 769
|
....*...
gi 554506543 1666 LLLKDELE 1673
Cdd:pfam05483 770 EKLKMEAK 777
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
377-1123 |
1.55e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 377 DQVVREKEKLRSDLDKAEKLKSLMASEV--DDHHAAIERRNEYNLRK-------LDEEYKERIAALKNELRQEREQMLQQ 447
Cdd:PTZ00121 1039 DDVLKEKDIIDEDIDGNHEGKAEAKAHVgqDEGLKPSYKDFDFDAKEdnradeaTEEAFGKAEEAKKTETGKAEEARKAE 1118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 448 VGKQRVELEQEIQKAKTEENYIRDRLALSLKENNRLE-TELLENAEKL-----AEYESLTQKLQRSLENVLAE---KFGD 518
Cdd:PTZ00121 1119 EAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEiARKAEDARKAeearkAEDAKKAEAARKAEEVRKAEelrKAED 1198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 519 LDPSSAEFFLQEERLAQMRNEYEQQCRLLQ-DQVDELQSELEEYQAQGRVLRLPLKNSLSEELDGH----SGGIEPDQGP 593
Cdd:PTZ00121 1199 ARKAEAARKAEEERKAEEARKAEDAKKAEAvKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHfarrQAAIKAEEAR 1278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 594 GSEECNPLNMSIEAElviEQMKEQHHRDLCHLRLELEDKVRHYE---KQLDDTRVASEQEQAAMKQKYEQGVHTLEKRVS 670
Cdd:PTZ00121 1279 KADELKKAEEKKKAD---EAKKAEEKKKADEAKKKAEEAKKADEakkKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA 1355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 671 ELRSEIADLEGQAAVLREAHHKASCRHEEEKRQLQMAFDEEKAQLQEELRQEHERELQARLQQAAESFRQEREGLAQAaw 750
Cdd:PTZ00121 1356 ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKA-- 1433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 751 TEEKVRGLEQSYQEQLLSLEEKHALEKEELREELSEHHRRELQEGREEMETECNRRVSQIEAQCQADCEKVTEHCEQTLQ 830
Cdd:PTZ00121 1434 DEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAD 1513
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 831 SLEVRHRQELRDLLDQHLEERSQWEFEKDELTQECTDAQ--EQLKEALQRERATAAAMKQEQEILERTYKDRLNILSTER 908
Cdd:PTZ00121 1514 EAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKkaEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEAR 1593
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 909 KQLLQDLKDLQNASESQHgLLSGQILELKRSQERELRDQGQALCQTGVSEQLASQQLERLRVEHEQE--RREMTGKLAAL 986
Cdd:PTZ00121 1594 IEEVMKLYEEEKKMKAEE-AKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENkiKAAEEAKKAEE 1672
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 987 ESAHRASLERADQEKAEMSTEICRLQNTVKDMQQAASLLM--LQGGCQATAGEEAEGDGAMSLLQQGEQlleengdvliS 1064
Cdd:PTZ00121 1673 DKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAeeKKKAEELKKAEEENKIKAEEAKKEAEE----------D 1742
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*....
gi 554506543 1065 LQRAHEHAVKENAKMATEISRLQQRLKKLEPGSVISSCLEEGTSEISGSSREQVEPIMK 1123
Cdd:PTZ00121 1743 KKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
530-1334 |
1.78e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 530 EERLAQMRNEYEQQCRLLQDQVDELQSELEEYQ------AQGRVLRLPLKNSLSEELDGHSGGIEPDQGPGSEECNPLNM 603
Cdd:pfam15921 91 QRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQmerdamADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNT 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 604 SIEAelvIEQMKEQHHRDLCHLRLELEDKVRHYEKQLDDTRVASEQEQAAMKQKYEQGVHTLEKRVSELRSEIADLEGQA 683
Cdd:pfam15921 171 QIEQ---LRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQL 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 684 AVLREahhkascrheEEKRQLQMAFDEEKAQLqEELRQEHERELQARLQQAAESFRQEREGLAQAAWTEEKVRGLEQSYQ 763
Cdd:pfam15921 248 EALKS----------ESQNKIELLLQQHQDRI-EQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYM 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 764 EQLLSLEEKHALEkeelreelsehhRRELQEGREEMETecnrRVSQIEAQCQADCEKVTEHceqtlqslevrhrqelrdl 843
Cdd:pfam15921 317 RQLSDLESTVSQL------------RSELREAKRMYED----KIEELEKQLVLANSELTEA------------------- 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 844 ldqhleersqwEFEKDELTQECTDAQEQLKEAL----QRERATAAAMKQEQEILERTYKDRLNIlsterKQLLQDLKDLQ 919
Cdd:pfam15921 362 -----------RTERDQFSQESGNLDDQLQKLLadlhKREKELSLEKEQNKRLWDRDTGNSITI-----DHLRRELDDRN 425
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 920 NASESQHGLLSGQILELKRSQERELRD-QGQALCQTGVSEQLAsqQLERLRVEHEQERREMTGKLAALESAHR------A 992
Cdd:pfam15921 426 MEVQRLEALLKAMKSECQGQMERQMAAiQGKNESLEKVSSLTA--QLESTKEMLRKVVEELTAKKMTLESSERtvsdltA 503
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 993 SLERADQEKAEMSTEICRLQNTV----KDMQ----QAASLLMLQGGCQATAGEEAEGDGAMSLLQQG----EQLLEENGD 1060
Cdd:pfam15921 504 SLQEKERAIEATNAEITKLRSRVdlklQELQhlknEGDHLRNVQTECEALKLQMAEKDKVIEILRQQienmTQLVGQHGR 583
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1061 VLISLQrahehavKENAKMATEISRLQQRLKKLEP-GSVISSCLEEGTSEISGSSREQVEpIMKQGPATKHFLSDLGDHE 1139
Cdd:pfam15921 584 TAGAMQ-------VEKAQLEKEINDRRLELQEFKIlKDKKDAKIRELEARVSDLELEKVK-LVNAGSERLRAVKDIKQER 655
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1140 ARDLASTGTSsvqRQECKTEASEASLDCFSELENSEDTRTESWDLK-------SQISQLREQLTVLRADCDRASERKQDL 1212
Cdd:pfam15921 656 DQLLNEVKTS---RNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKmqlksaqSELEQTRNTLKSMEGSDGHAMKVAMGM 732
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1213 LFDIS-------VLKKKLKMLERLPEASSRYKVLYEDaarENSCLQEELRLVETRYEESLDSNKELTAEVYRLQDEMKKM 1285
Cdd:pfam15921 733 QKQITakrgqidALQSKIQFLEEAMTNANKEKHFLKE---EKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANM 809
|
810 820 830 840
....*....|....*....|....*....|....*....|....*....
gi 554506543 1286 EEVMETfLSLEKSYDEVKVENEELRALVLRLQgkmeKVLGRAALQGDSY 1334
Cdd:pfam15921 810 EVALDK-ASLQFAECQDIIQRQEQESVRLKLQ----HTLDVKELQGPGY 853
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
710-1093 |
1.94e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.42 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 710 EEKAQLQEELRQEHERELQARLQQAAESFRQEREGLAQAAWTEEKVRGLEQSYQEQllsLEEKHALEKEELREELSEHHR 789
Cdd:TIGR00618 200 TLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQ---LKKQQLLKQLRARIEELRAQE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 790 RELQEGREEMETECNRRVSQIEAQCQADCEKVTEHCEQTLQSLEVRHRQEL---RDLLDQHLEERSQWEFEKDELTQE-- 864
Cdd:TIGR00618 277 AVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLmkrAAHVKQQSSIEEQRRLLQTLHSQEih 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 865 ---CTDAQEQLKEALQRERATAAAMKQEQEILErTYKDRLNILSTERKQlLQDLKDLQNASESQHGLLSGQILELKRSQE 941
Cdd:TIGR00618 357 irdAHEVATSIREISCQQHTLTQHIHTLQQQKT-TLTQKLQSLCKELDI-LQREQATIDTRTSAFRDLQGQLAHAKKQQE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 942 RELRDqgQALCQTGVSEQLASQQLE-RLRVEHEQERREMTGKLAALESAHRASLERA---DQEKAEMSTEICRLQNTVKD 1017
Cdd:TIGR00618 435 LQQRY--AELCAAAITCTAQCEKLEkIHLQESAQSLKEREQQLQTKEQIHLQETRKKavvLARLLELQEEPCPLCGSCIH 512
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 554506543 1018 MQQAASLLMLQGGCQatageeaegdgamSLLQQGEQLLEENGDVLISLQRAHEHAVKENAKMATEISRLQQRLKKL 1093
Cdd:TIGR00618 513 PNPARQDIDNPGPLT-------------RRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSIL 575
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
531-765 |
2.20e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 531 ERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQGRVLRLpLKNSLSEELDghsggiepdqgpgseecnplNMSIEAELV 610
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQR-LAEYSWDEID--------------------VASAEREIA 671
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 611 ieqmkeqhhrdlchlrlELEDKVRHYEKQLDDTRVASEQEQAamkqkyeqgvhtLEKRVSELRSEIADLEGQAAVLREAH 690
Cdd:COG4913 672 -----------------ELEAELERLDASSDDLAALEEQLEE------------LEAELEELEEELDELKGEIGRLEKEL 722
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 554506543 691 HKASCRHEEEKRQLQMAFDEEKAQLQEELRQEHERELQ-ARLQQAAESFRQEREGLAQAAW-TEEKVRGLEQSYQEQ 765
Cdd:COG4913 723 EQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGdAVERELRENLEERIDALRARLNrAEEELERAMRAFNRE 799
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
428-564 |
2.24e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 2.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 428 ERIAALKNELRQEREQmLQQVGKQRVELEQEIQKAKTEENYIRDRLALSLKENNRLETELLENAEKLAEYESLTQKLQRS 507
Cdd:COG4942 20 DAAAEAEAELEQLQQE-IAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 508 LEN---------VLAEKFGDLDPS----SAEFFLQEERLAQMRNEYEQQcrlLQDQVDELQSELEEYQAQ 564
Cdd:COG4942 99 LEAqkeelaellRALYRLGRQPPLalllSPEDFLDAVRRLQYLKYLAPA---RREQAEELRADLAELAAL 165
|
|
| CHASE3 |
COG5278 |
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms]; |
656-1094 |
2.32e-03 |
|
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];
Pssm-ID: 444089 [Multi-domain] Cd Length: 530 Bit Score: 42.97 E-value: 2.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 656 QKYEQGVHTLEKRVSELRSEIADLEGQAAVLREAHHKASCRHEEEKRQLQMAFDEEKAQLQEELRQEHERELQARLQQAA 735
Cdd:COG5278 79 EPYEEARAEIDELLAELRSLTADNPEQQARLDELEALIDQWLAELEQVIALRRAGGLEAALALVRSGEGKALMDEIRARL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 736 ESFRQEREGLAQAAWTEEKVRGLEQSYQEQLLSLEEKHALEKEELREELSEHHRRELQEGREEMETECNRRVSQIEAQCQ 815
Cdd:COG5278 159 LLLALALAALLLAAAALLLLLLALAALLALAELLLLALARALAALLLLLLLEAELAAAAALLAAAAALAALAALELLAAL 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 816 ADCEKVTEHCEQTLQSLEVRHRQELRDLLDQHLEERSQWEFEKDELTQECTDAQEQLKEALQRERATAAAMKQEQEILER 895
Cdd:COG5278 239 ALALALLLAALLLALLAALALAALLAAALLALAALLLALAAAAALAAAAALELAAAEALALAELELELLLAAAAAAAAAA 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 896 TYKDRLNILSTERKQLLQDLKDLQNASESQHGLLSGQILELKRSQERELRDQGQALCQTGVSEQLASQQLERLRVEHEQE 975
Cdd:COG5278 319 AAAAAALAALLALALATALAAAAAALALLAALLAEAAAAAAEEAEAAAEAAAAALAGLAEVEAEGAAEAVELEVLAIAAA 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 976 RREMTGKLAALESAHRASLERADQEKAEMSTEICRLQNTVKDMQQAASLLMLQGGCQATAGEEAEGDGAMSLLQQGEQLL 1055
Cdd:COG5278 399 AAAAAAEAAAAAAAAAAASAAEALELAEALAEALALAEEEALALAAASSELAEAGAALALAAAEALAEELAAVAALAALA 478
|
410 420 430
....*....|....*....|....*....|....*....
gi 554506543 1056 EENGDVLISLQRAHEHAVKENAKMATEISRLQQRLKKLE 1094
Cdd:COG5278 479 AAAAALAEAEAAAALAAAAALSLALALAALLLAAAEAAL 517
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
531-1323 |
2.72e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 531 ERLAQMRNEYEQQCRLLQDQVD------ELQSELEEYQAQGRVLRLplkNSLSEELDGHSGGIEPDQgpgsEECNplnmS 604
Cdd:TIGR02168 189 DRLEDILNELERQLKSLERQAEkaerykELKAELRELELALLVLRL---EELREELEELQEELKEAE----EELE----E 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 605 IEAELvieQMKEQHHRDLCHLRLELEDKVRHYEKQLDDTrVASEQEQAAMKQKYEQGVHTLEKRVSELRSEIADLEGQAA 684
Cdd:TIGR02168 258 LTAEL---QELEEKLEELRLEVSELEEEIEELQKELYAL-ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLD 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 685 VLREAHHKAscrhEEEKRQLQMAFDEEKAQLQEElrQEHERELQARLQQAAESFRQEREGLAQAAWTEEKVRGLEQSYQE 764
Cdd:TIGR02168 334 ELAEELAEL----EEKLEELKEELESLEAELEEL--EAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 765 QLLSLEEKHA---LEKEELREELSEHHRRELQEGREEMETE------CNRRVSQIEAQCQADCEKVTEHCEQTLQSL-EV 834
Cdd:TIGR02168 408 RLERLEDRRErlqQEIEELLKKLEEAELKELQAELEELEEEleelqeELERLEEALEELREELEEAEQALDAAERELaQL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 835 RHRQELRDLLDQHLEERS----QWEFEKDELTQ---------ECTDAQEQLKEALQRERATAAAM------KQEQEILER 895
Cdd:TIGR02168 488 QARLDSLERLQENLEGFSegvkALLKNQSGLSGilgvlseliSVDEGYEAAIEAALGGRLQAVVVenlnaaKKAIAFLKQ 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 896 TYKDRLNIL-----------STERKQL------LQDLKDLQNASESQHGLLSG------------QILELKRSQERELR- 945
Cdd:TIGR02168 568 NELGRVTFLpldsikgteiqGNDREILkniegfLGVAKDLVKFDPKLRKALSYllggvlvvddldNALELAKKLRPGYRi 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 946 --DQGQAL----CQTGVSEQLASQQLERLR--VEHEQERREMTGKLAALESAhrasLERADQEKAEMSTEICRLQNTVKD 1017
Cdd:TIGR02168 648 vtLDGDLVrpggVITGGSAKTNSSILERRReiEELEEKIEELEEKIAELEKA----LAELRKELEELEEELEQLRKELEE 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1018 MQQAASLL--MLQGGCQATAGEEAEGDGAMSLLQQGEQLLEENGDVLISLQRAHEHAVKENAKMATEISRLQQRLKKLEP 1095
Cdd:TIGR02168 724 LSRQISALrkDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE 803
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1096 GSVISSCLEEGTSEISGSSREQVEPIMKQGPATKHFLSDLgDHEARDLASTGTSSVQRQECKTEASEASLDCFSELENSE 1175
Cdd:TIGR02168 804 ALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL-EEQIEELSEDIESLAAEIEELEELIEELESELEALLNER 882
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1176 DTRTEswdlksQISQLREQLTVLRADCDRASERKQDLLFDISVLKKKL-KMLERLPEASSRYKVLYEDAAREnscLQEEL 1254
Cdd:TIGR02168 883 ASLEE------ALALLRSELEELSEELRELESKRSELRRELEELREKLaQLELRLEGLEVRIDNLQERLSEE---YSLTL 953
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 554506543 1255 RLVETRYEESLDSNKELTAEVYRLQDEMKKMEEV----METFLSLEKSYDEVKVENEELRALVLRLQGKMEKV 1323
Cdd:TIGR02168 954 EEAEALENKIEDDEEEARRRLKRLENKIKELGPVnlaaIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
706-942 |
3.77e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 3.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 706 MAFDEEKAQLQEELrQEHERELQARLQQAAESFRQEREGLAQAAWTEEKVRGLE---QSYQEQLLSLEEKHALEKEElre 782
Cdd:COG4942 16 AAQADAAAEAEAEL-EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALArriRALEQELAALEAELAELEKE--- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 783 elsehhRRELQEGREEMETECNRRVSQIEAQCQADCEKVTEHCEQTLQSLEVRHR-----QELRDLLDQHLEERSQWEFE 857
Cdd:COG4942 92 ------IAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYlkylaPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 858 KDELTQEcTDAQEQLKEALQRERATAAAMKQEQEILertykdrLNILSTERKQLLQDLKDLQNASESQHGLLSGQILELK 937
Cdd:COG4942 166 RAELEAE-RAELEALLAELEEERAALEALKAERQKL-------LARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
....*
gi 554506543 938 RSQER 942
Cdd:COG4942 238 AAAER 242
|
|
| LCD1 |
pfam09798 |
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. ... |
1474-1583 |
4.30e-03 |
|
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe this protein is called Rad26 and in Saccharomyces cerevisiae it is called LCD1.
Pssm-ID: 462906 Cd Length: 615 Bit Score: 41.92 E-value: 4.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1474 QGQKEEELKAMMQDLQITCGEMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQ 1553
Cdd:pfam09798 10 QQEKEKELEKLKNSYEELKSSHEEELEKLKQEVQKLEDEKKFLLNELRSLSATSPASSQSHETDTDDSSSVSLKKRKIEE 89
|
90 100 110
....*....|....*....|....*....|
gi 554506543 1554 EKAsiqtmvEKLKKQVsdLKIKNQQLDSEN 1583
Cdd:pfam09798 90 STA------ESLKQKY--IRLQNNRIVDET 111
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
378-960 |
4.33e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.26 E-value: 4.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 378 QVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKERIAALKNELRQEREQMlQQVGKQRVELEQ 457
Cdd:TIGR00618 264 QLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKR-AAHVKQQSSIEE 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 458 EIQKAKT---EENYIRDR--LALSLKENNRLETELLENAEKLAE-YESLTQKLQ--RSLENVLAEKFGDLDPSSAEFFLQ 529
Cdd:TIGR00618 343 QRRLLQTlhsQEIHIRDAheVATSIREISCQQHTLTQHIHTLQQqKTTLTQKLQslCKELDILQREQATIDTRTSAFRDL 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 530 EERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQGRVLRLPLK--NSLSEELDGHSGGIEPDQGPGSEECNPLNMSIEA 607
Cdd:TIGR00618 423 QGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQslKEREQQLQTKEQIHLQETRKKAVVLARLLELQEE 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 608 ELVIEQMKEQHHRDL---------CHLRLELEDKVRHYEKQLDDT---------RVASEQEQAAMKQKYEQGVHTLEKRV 669
Cdd:TIGR00618 503 PCPLCGSCIHPNPARqdidnpgplTRRMQRGEQTYAQLETSEEDVyhqltserkQRASLKEQMQEIQQSFSILTQCDNRS 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 670 SE----LRSEIADLEGQAAVLREAHHKASCRHEEEKRQLQMAFDEEKAQLQEELRQEHERELQARLQQAAESFRQEREGL 745
Cdd:TIGR00618 583 KEdipnLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVRE 662
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 746 AQAAWTEEKvrglEQSYQEQLLSLEEKHALEKEELREELSEHHRRELQEGREEMETECNRRVSQIEAQCQADCEKVTEHC 825
Cdd:TIGR00618 663 HALSIRVLP----KELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAARE 738
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 826 EQTLQSLevRHRQELRDLLDQHLEERSQWEFEKDELTQECTDAQEQLKEALQRERATAAA----MKQEQEILERTYKDRL 901
Cdd:TIGR00618 739 DALNQSL--KELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEdthlLKTLEAEIGQEIPSDE 816
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 554506543 902 NILSTERKQLLQDLKDLQNASESQHGLLSGQILELKRSQERELRDQGQALCQTGVSEQL 960
Cdd:TIGR00618 817 DILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLS 875
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1430-1657 |
4.43e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 4.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1430 LQDKHLQQEATIAELELEKQKLQELTRNLRERVTALVR--QKDAPSQGQKEEELKAMMQDLQITCGEMQRKVELLRYESE 1507
Cdd:TIGR02169 260 ISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGelEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1508 KLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQTMVEKLKKQVSDLKIKNQQLDSENIELS 1587
Cdd:TIGR02169 340 ELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLS 419
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 554506543 1588 QKNSQNKEELKTLNQRLAEMLCQREEPGACTSEKwEQENASLKEELDHYKVQ---TSTLVSSLEAELSEVKLQ 1657
Cdd:TIGR02169 420 EELADLNAAIAGIEAKINELEEEKEDKALEIKKQ-EWKLEQLAADLSKYEQElydLKEEYDRVEKELSKLQRE 491
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1509-1800 |
4.53e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.93 E-value: 4.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1509 LQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQTMVEKLKKQvsdLKIKNQQLDSENIELSQ 1588
Cdd:TIGR04523 73 SNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQ---KKENKKNIDKFLTEIKK 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1589 KNSqnkeELKTLNQRLAEMLCQRE----EPGACTSEKWEQENASLKEELDHYKVQTSTLV--------SSLEAELSEVKL 1656
Cdd:TIGR04523 150 KEK----ELEKLNNKYNDLKKQKEelenELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNlkkkiqknKSLESQISELKK 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1657 QTHVMEQENLLLKDELERLKQlhrcpDLSDFQQKMSSILSYNEKLLKEKEVLSEELKSCADKLAEsslLEHRIATMKQEQ 1736
Cdd:TIGR04523 226 QNNQLKDNIEKKQQEINEKTT-----EISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE---LEKQLNQLKSEI 297
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 554506543 1737 TAWEEQSES-----LKSQLAVSQAKVQNLEDVLQNVNLQMAEIESDLQVTRQEKEALKQEVMSLHRQLQ 1800
Cdd:TIGR04523 298 SDLNNQKEQdwnkeLKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELE 366
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1436-1873 |
6.86e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 6.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1436 QQEATIAELELEKQKLQELTRNLRERVTALVRQKDapSQGQKEEELKAMMQDLQITCGEMQRKVELLRYESEKLQEENSI 1515
Cdd:TIGR02169 319 DAEERLAKLEAEIDKLLAEIEELEREIEEERKRRD--KLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1516 LRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQTMVEKLKKQVSDLKIKNQQLDSENIELSQKNSQNKE 1595
Cdd:TIGR02169 397 LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE 476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1596 ELKTLNQRLAEMlcQRE----EPGACTSEKWEQENASLKEELDhykvQTSTLVSSLEAELSEVK--------------LQ 1657
Cdd:TIGR02169 477 EYDRVEKELSKL--QRElaeaEAQARASEERVRGGRAVEEVLK----ASIQGVHGTVAQLGSVGeryataievaagnrLN 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1658 THVMEQENL------LLKDE---------LERLKQLHRCP-------------DLSDFQQKMSSILSY------------ 1697
Cdd:TIGR02169 551 NVVVEDDAVakeaieLLKRRkagratflpLNKMRDERRDLsilsedgvigfavDLVEFDPKYEPAFKYvfgdtlvvedie 630
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1698 ---------------------------------------------NEKLLKEKEVLSEELKSCADKLAES---------- 1722
Cdd:TIGR02169 631 aarrlmgkyrmvtlegelfeksgamtggsraprggilfsrsepaeLQRLRERLEGLKRELSSLQSELRRIenrldelsqe 710
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1723 -SLLEHRIATMKQEQTAWEEQSESLKSQLAVSQAKVQNLEDVLQNVNLQMAEIESDLQVTRQEKEALKQEVMSLHR---- 1797
Cdd:TIGR02169 711 lSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEArlsh 790
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1798 ----QLQNAIDK--DWVSETAPHLSGLRGQQRRLSWDK--LDHLMNEEPQLL----------CQESKRLQTVVQNTQADL 1859
Cdd:TIGR02169 791 sripEIQAELSKleEEVSRIEARLREIEQKLNRLTLEKeyLEKEIQELQEQRidlkeqiksiEKEIENLNGKKEELEEEL 870
|
570
....*....|....
gi 554506543 1860 THSREKVRQLESNL 1873
Cdd:TIGR02169 871 EELEAALRDLESRL 884
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
629-733 |
7.68e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.38 E-value: 7.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 629 LEDKVRHYEKQLDDTRVASEQEQAAMKQKYEQGVHTLEKRVSELRSEIADLEGQAAVLREAHHKASCRHEEEKRQLQM-- 706
Cdd:COG2433 382 LEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEERRei 461
|
90 100 110
....*....|....*....|....*....|....*.
gi 554506543 707 -------AFDEEKAQLQEELRQEHER--ELQARLQQ 733
Cdd:COG2433 462 rkdreisRLDREIERLERELEEERERieELKRKLER 497
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1436-1805 |
8.39e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.58 E-value: 8.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1436 QQEATIAELELEKQKLQELTRNLRERVTALVRQKDAPSQGQKEEELKAMMQDLqITcgemqrKVELLRYesekLQEENSI 1515
Cdd:TIGR01612 1126 KIDHHIKALEEIKKKSENYIDEIKAQINDLEDVADKAISNDDPEEIEKKIENI-VT------KIDKKKN----IYDEIKK 1194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1516 LRNEITTLnEEDSISNLKLEELNGSQEELWQKI--ETIEQEKASIQTMVEKLKKQVSDL-KIKNQQLDSENiELSQKNSQ 1592
Cdd:TIGR01612 1195 LLNEIAEI-EKDKTSLEEVKGINLSYGKNLGKLflEKIDEEKKKSEHMIKAMEAYIEDLdEIKEKSPEIEN-EMGIEMDI 1272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1593 NKeELKTLN-------------QRLAEMLCQ-REEPGACTSEKWEQENAS-LKEELDHYKVQTSTLVSSLEAELSEVKLQ 1657
Cdd:TIGR01612 1273 KA-EMETFNishdddkdhhiisKKHDENISDiREKSLKIIEDFSEESDINdIKKELQKNLLDAQKHNSDINLYLNEIANI 1351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1658 THVMEQENllLKDELERLKQLHRcpDLSDFQQKMSSILSYNEKLLKE-KEVLSeeLKSCADKLaESSLLEHRIATMKQEQ 1736
Cdd:TIGR01612 1352 YNILKLNK--IKKIIDEVKEYTK--EIEENNKNIKDELDKSEKLIKKiKDDIN--LEECKSKI-ESTLDDKDIDECIKKI 1424
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 554506543 1737 TAWEEQ--SESLKSQLAVSQAKVQNlEDVLQNV-NLQMAEIESDLQVTRQEKEALKQEVMSLHrQLQNAIDK 1805
Cdd:TIGR01612 1425 KELKNHilSEESNIDTYFKNADENN-ENVLLLFkNIEMADNKSQHILKIKKDNATNDHDFNIN-ELKEHIDK 1494
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
359-975 |
9.07e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 9.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 359 QAALASFKAEIRHLLERVDQVVREKEKLRSDLDK-AEKLKSL-------MASEVDDHHAAIER------RNEYNLRKLDE 424
Cdd:TIGR02169 243 ERQLASLEEELEKLTEEISELEKRLEEIEQLLEElNKKIKDLgeeeqlrVKEKIGELEAEIASlersiaEKERELEDAEE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 425 E---YKERIAALKNELRQEREQmLQQVGKQRVELEQEIQKAKTEENYIRDRLALSLKENNRLETELLENAEKLAEYESLT 501
Cdd:TIGR02169 323 RlakLEAEIDKLLAEIEELERE-IEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREI 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 502 QKLQRSLENVLAEKFG------------------------DLDPSSAEFFLQE---ERLAQMRNEYEQQ-------CRLL 547
Cdd:TIGR02169 402 NELKRELDRLQEELQRlseeladlnaaiagieakineleeEKEDKALEIKKQEwklEQLAADLSKYEQElydlkeeYDRV 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 548 QDQVDELQSELEEYQAQGRVLRLPLKNS------LSEELDGHSGGIEPDQGPGSEECNPL---------NMSIEAELV-- 610
Cdd:TIGR02169 482 EKELSKLQRELAEAEAQARASEERVRGGraveevLKASIQGVHGTVAQLGSVGERYATAIevaagnrlnNVVVEDDAVak 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 611 --IEQMKE---------------QHHRDLCHLRL-----------ELEDKVRHYEKQ-LDDTRVASEQEQAAMkqkyeqg 661
Cdd:TIGR02169 562 eaIELLKRrkagratflplnkmrDERRDLSILSEdgvigfavdlvEFDPKYEPAFKYvFGDTLVVEDIEAARR------- 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 662 vHTLEKRVSELRSEIADLEGQAAVLREAHHKASCRHEEEKRQLQMafdeekaqLQEELrQEHERELqARLQQAAESFRQE 741
Cdd:TIGR02169 635 -LMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQR--------LRERL-EGLKREL-SSLQSELRRIENR 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 742 REGLAQAAWTEEKVRGLEQSYQEQLLSLEEKHALEKEELREELsehhrRELQEGREEMETECNRRVSQIEAQcQADCEKV 821
Cdd:TIGR02169 704 LDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDL-----SSLEQEIENVKSELKELEARIEEL-EEDLHKL 777
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 822 TEHCEQTLQSLEVRHRQELRDLLDQHLEERSQWEFEKDELTQEcTDAQEQLKEALQRERATAAAMKQEQEILERTYKDRL 901
Cdd:TIGR02169 778 EEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQK-LNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI 856
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 554506543 902 NILSTERKQLLQDLKDLQNAS---ESQHGLLSGQILELKrSQERELRD-QGQALCQTGVSEQLASQQLERLRVEHEQE 975
Cdd:TIGR02169 857 ENLNGKKEELEEELEELEAALrdlESRLGDLKKERDELE-AQLRELERkIEELEAQIEKKRKRLSELKAKLEALEEEL 933
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
782-1604 |
9.31e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.11 E-value: 9.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 782 EELSEHHRRELQEGREEMETECNRRVSQIEAQCQADCEKVTEHCEQTLQSLEVRHRQELRDLLDQHLEERSQWEFEKDEL 861
Cdd:pfam02463 176 KKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIES 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 862 TQECTDAQEQLKEALQRERATAAAMKQEQEILERTYKDRLNILSTER---KQLLQDLKDLQNASESQHGLLSGQILELK- 937
Cdd:pfam02463 256 SKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELlklERRKVDDEEKLKESEKEKKKAEKELKKEKe 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 938 ----RSQERELRDQGQALCQTGVSEQLASQQ-LERLRVEHEQERREMTGKLAALESAHRASLERADQEKAEMSTEICRLQ 1012
Cdd:pfam02463 336 eieeLEKELKELEIKREAEEEEEEELEKLQEkLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELAR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1013 NTVKDMQQAASLLMLQGGCQATAGEEAEGDGAMSLLQQGEQLLEENGDVLISLQRAHEHAVKENAKMATEISRLQQRLKK 1092
Cdd:pfam02463 416 QLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1093 LEPGSVISSCLEEGTSEISGSSREQVEPIM-------KQGPATKHFLSDLGDHEARDLASTGTSSVQRQECKTEASEASL 1165
Cdd:pfam02463 496 EERSQKESKARSGLKVLLALIKDGVGGRIIsahgrlgDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPL 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1166 DCFSELENSEDTRTESWDLKSQISQL-----REQLTVLRADCDRASERKQDLLFDISVLKK----KLKMLERLPEASSRY 1236
Cdd:pfam02463 576 GARKLRLLIPKLKLPLKSIAVLEIDPilnlaQLDKATLEADEDDKRAKVVEGILKDTELTKlkesAKAKESGLRKGVSLE 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1237 KVLYEDAARENSCLQEELRLVETRYEESLDSNKELTAEVYRLQDEMKKMEEvMETFLSLEKSYDEVKVENEELRALVLRL 1316
Cdd:pfam02463 656 EGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQ-REKEELKKLKLEAEELLADRVQEAQDKI 734
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1317 QG-----KMEKVLGRAALQGDSYALWEAPSENLEVASDEKMLELRQTPKECTPKVVSMHHIIEEctQETQCCEQGSTKLL 1391
Cdd:pfam02463 735 NEelkllKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKA--QEEELRALEEELKE 812
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1392 ARIKAHEIAwfhrAIKTHPEKPSAQNRVIPEGSAALLGLQDKHLQQEATIaELELEKQKLQELTRNLRERVTALVRQKDA 1471
Cdd:pfam02463 813 EAELLEEEQ----LLIEQEEKIKEEELEELALELKEEQKLEKLAEEELER-LEEEITKEELLQELLLKEEELEEQKLKDE 887
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554506543 1472 PSQGQKEEELKAMMQDLQITCGEMQRKVEllRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETI 1551
Cdd:pfam02463 888 LESKEEKEKEEKKELEEESQKLNLLEEKE--NEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRL 965
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....
gi 554506543 1552 EQEKASIQTMVEKLKKQVSDLKIKNQQLDSENIELSQ-KNSQNKEELKTLNQRL 1604
Cdd:pfam02463 966 LLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEeKKKLIRAIIEETCQRL 1019
|
|
| |
