|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
588-1353 |
6.61e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.57 E-value: 6.61e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 588 TEYERRIEQLEESLQRAQEELSILEKRktdenkslqleyMAKIETSENENRSKFRAycldLKETQKRYEEQLQQTNEKLA 667
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAE------------LQELEEKLEELRLEVSE----LEEEIEELQKELYALANEIS 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 668 SVTTQcqvhldviKRSLQEKITQAEKERNELAVRhKAELEKIRETLKEKESSYKEKLRQAEEERDKEISRLEVMRNTIAE 747
Cdd:TIGR02168 299 RLEQQ--------KQILRERLANLERQLEELEAQ-LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 748 LHKTNSDREVELEGVKMEKCQLKKLYDKSMLELEQLQctadqkssdllpgssnENIDDLQKKCDQYVQDLELLRGEKAEl 827
Cdd:TIGR02168 370 LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLE----------------ARLERLEDRRERLQQEIEELLKKLEE- 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 828 lSEIQKINGQHSNTIKKLEEIEAEMITLTTQKELERCEIAEKLETFKSKEADikeaLHCAQLRLHAYDKLVCEYE----- 902
Cdd:TIGR02168 433 -AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE----LAQLQARLDSLERLQENLEgfseg 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 903 ------------RLKGCLSDSNKLSENLQKKVERLHAEqlALQEGISGRDSEIKQLRSELKDAIDENKTVREAKVGLENS 970
Cdd:TIGR02168 508 vkallknqsglsGILGVLSELISVDEGYEAAIEAALGG--RLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTE 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 971 LKAVQENMSAQEGQFKQKIADIKGSVDELQIKLKSLQE---VRDHLESRNEELKRKL---------------------KD 1026
Cdd:TIGR02168 586 IQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGgvlVVDDLDNALELAKKLRpgyrivtldgdlvrpggvitgGS 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1027 AQELQNMVDKERKLnSSLREDFDKLEQTKLDLEEQLRAKKVEIDRRSKELGEVTKDCENIRSDLEAQTNDF---LKERET 1103
Cdd:TIGR02168 666 AKTNSSILERRREI-EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLarlEAEVEQ 744
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1104 LNLTISDLRLHNEQLLETSKNYLSDITAANNLNLEMKKNLHDLTKECKSLRSDLQSKEEYF---QTQKQLLDETISNLKE 1180
Cdd:TIGR02168 745 LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALdelRAELTLLNEEAANLRE 824
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1181 ENRKMEEKLSsgnkALKEDCEKLRSTLESKELILQQNKQELEERLTVINEKNGKNALLDAQLKSNETAFTSLRKAWIKQS 1260
Cdd:TIGR02168 825 RLESLERRIA----ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1261 LAIEAANKRSLEMEQKVDKRTREYEELRSTLKTREINFRSEKERMDGTISSLLEDKRNLEEKlctVTELLAKLKRELPAL 1340
Cdd:TIGR02168 901 EELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENK---IEDDEEEARRRLKRL 977
|
810
....*....|...
gi 665407636 1341 HTQKVNGGDVSIE 1353
Cdd:TIGR02168 978 ENKIKELGPVNLA 990
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
407-1149 |
3.98e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.79 E-value: 3.98e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 407 LVKEEDRMRDIIFQLKQEVDGKKNLIEEEKEVINNLRAQITSLNqietiKNQNAKTKILCEELQTKDTVQTANKQESQEV 486
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELE-----EEIEELQKELYALANEISRLEQQKQILRERL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 487 LTLKTSLAHLKSKVCELQKKLEKQSEDEKisELQSDIGEISECCLSMELKLadivnwqaEELRPLDQLQESGVELQHHST 566
Cdd:TIGR02168 312 ANLERQLEELEAQLEELESKLDELAEELA--ELEEKLEELKEELESLEAEL--------EELEAELEELESRLEELEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 567 TAEESLNVEKPIQEQTERTLTTEYERRIEQLEESLQRAQEELSILEKRKTDENKSLQLEYMAKIETSENENRSKFRAYCL 646
Cdd:TIGR02168 382 ETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 647 DLKETQKRYEEQLQQTNEKLASVTtQCQVHLDVIKRSLQEKITQAEKERNELAvrHKAELEKIRETLKEK---ESSYKEK 723
Cdd:TIGR02168 462 ALEELREELEEAEQALDAAERELA-QLQARLDSLERLQENLEGFSEGVKALLK--NQSGLSGILGVLSELisvDEGYEAA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 724 LRQAEEER--DKEISRLEVMRNTIAELHKTNSDR----------EVELEGVKMEKCQLKKLYDKSMLELEQLQCTADQKS 791
Cdd:TIGR02168 539 IEAALGGRlqAVVVENLNAAKKAIAFLKQNELGRvtflpldsikGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 792 SDLLPGS----SNENIDDLQKKCDQY----VQDLELLRGEKAELLSEIQKING--QHSNTIKKLEEIEAEMITLTTQKEL 861
Cdd:TIGR02168 619 SYLLGGVlvvdDLDNALELAKKLRPGyrivTLDGDLVRPGGVITGGSAKTNSSilERRREIEELEEKIEELEEKIAELEK 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 862 ERCEIAEKLETFKSKEADIKEALHCAQLRLHAYDKlvcEYERLKgclsdsnKLSENLQKKVERLHAEQLALQEGISGRDS 941
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQISALRK---DLARLE-------AEVEQLEERIAQLSKELTELEAEIEELEE 768
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 942 EIKQLRSELKDAIDENKTVREAKVGLENSLKAVQENMSAQEGQFKqkiaDIKGSVDELQIKLKSLQEVRDHLESRNEELK 1021
Cdd:TIGR02168 769 RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT----LLNEEAANLRERLESLERRIAATERRLEDLE 844
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1022 RKLKDAQELQNMVDKERklnSSLREDFDKLEQTKLDLEEQLRAKKVEIDRRSKELGEVTKDCENIRSDLeaqtNDFLKER 1101
Cdd:TIGR02168 845 EQIEELSEDIESLAAEI---EELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR----SELRREL 917
|
730 740 750 760
....*....|....*....|....*....|....*....|....*...
gi 665407636 1102 ETLNLTISDLRLHNEQLLETSKNYLSDITAANNLNLEMKKNLHDLTKE 1149
Cdd:TIGR02168 918 EELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIED 965
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
470-1221 |
8.36e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 73.64 E-value: 8.36e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 470 QTKDTVQTANKQESQEVLTLKTSLAHLKSKVCELQKKLEKQSEDEKISELQ--SDIGEISECCLSMELKLADIVNWQAEE 547
Cdd:PTZ00121 1234 EAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKkaEEKKKADEAKKAEEKKKADEAKKKAEE 1313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 548 LRPLDQLQESGVELQHHSTTAEESLNVEKPIQEQTERtlttEYERRIEQLEESLQRAQ--EELSILEKRKTDENKSLQLE 625
Cdd:PTZ00121 1314 AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKA----EAEAAADEAEAAEEKAEaaEKKKEEAKKKADAAKKKAEE 1389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 626 YMAKIETSENENRSKFRAYCLDLKETQKRYEEQLQQTNEKlasvttqcqvhldviKRSLQEKITQAEKERNELAVRHKAE 705
Cdd:PTZ00121 1390 KKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEE---------------KKKADEAKKKAEEAKKADEAKKKAE 1454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 706 LEKIRETLKEKessyKEKLRQAEEERDK-EISRLEVMRNTIAELHKTNSDREVELEGVKMEKCQLKKLYDKSmlELEQLQ 784
Cdd:PTZ00121 1455 EAKKAEEAKKK----AEEAKKADEAKKKaEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK--KADEAK 1528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 785 CTADQKSSDLLPGSSNENIDDLQKKCDQYVQDLELLRGEKAELLSEIQKINGQHSNTIKKLEEIEAEMITLTTQKELE-R 863
Cdd:PTZ00121 1529 KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKmK 1608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 864 CEIAEKLETFKSKEADIKEAlhcaqlrlhayDKLVCEYERLKGCLSDSNKLSENLQKKVE--RLHAEQLALQEgisgrdS 941
Cdd:PTZ00121 1609 AEEAKKAEEAKIKAEELKKA-----------EEEKKKVEQLKKKEAEEKKKAEELKKAEEenKIKAAEEAKKA------E 1671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 942 EIKQLRSELKDAIDENKTVREAKVGLENSLKAVQEnMSAQEGQFKQKIADIKGSVDELQIKLKSLQEVRDHLESRNEELK 1021
Cdd:PTZ00121 1672 EDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEE-LKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1022 RKLKDAQELQNMVDKERKLNSSLREDFDKLEQTKLDLEEQLRakKVEIDRRSKelgEVTKDCENIRSDLEAQTNDFLKER 1101
Cdd:PTZ00121 1751 KDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKR--RMEVDKKIK---DIFDNFANIIEGGKEGNLVINDSK 1825
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1102 ETLNLTISDLRLHNEQLLETSKNYLSDITAANNLNLEMKKNLHDLTKECKSLRSDLQSKEEYFQTQKQLLDETISNLKEE 1181
Cdd:PTZ00121 1826 EMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNN 1905
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 665407636 1182 NRKMEEKLSSGNKALKEDCEKlRSTLESKELILQQNKQEL 1221
Cdd:PTZ00121 1906 NMAGKNNDIIDDKLDKDEYIK-RDAEETREEIIKISKKDM 1944
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
588-1092 |
2.76e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 71.63 E-value: 2.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 588 TEYERRIEQLEESLQRAQEelsiLEKRKTDENKSLqleymAKIETSENENRSKFRAYCLDLKETQKRYEEqLQQTNEKLA 667
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTEN----IEELIKEKEKEL-----EEVLREINEISSELPELREELEKLEKEVKE-LEELKEEIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 668 SVTTQcQVHLDVIKRSLQEKITQAEKERNELAVRHKaELEKIRETLKEKE---------SSYKEKLRQAEEERDKEISRL 738
Cdd:PRK03918 242 ELEKE-LESLEGSKRKLEEKIRELEERIEELKKEIE-ELEEKVKELKELKekaeeyiklSEFYEEYLDELREIEKRLSRL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 739 EVMRNTIAELHKTNSDREVELEGVKMEKCQLKK----------LYDKSMLELEQLQcTADQKSSDLLPGSSNENIDDLQK 808
Cdd:PRK03918 320 EEEINGIEERIKELEEKEERLEELKKKLKELEKrleeleerheLYEEAKAKKEELE-RLKKRLTGLTPEKLEKELEELEK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 809 KCDQYVQDLELLRGEKAEL----------LSEIQKINGQHSNTIKKLEEIEAEMITLTTQKELERceIAEKLETFKSKEA 878
Cdd:PRK03918 399 AKEEIEEEISKITARIGELkkeikelkkaIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKR--IEKELKEIEEKER 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 879 DIKEALHCAQLRLHAYDKLVCEYERLKGCLSDSNKLSENLQKKVERLHAEQLALQEGISGRDSEIKQLRSELKDAIDENK 958
Cdd:PRK03918 477 KLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKK 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 959 TVREakvgLENSLKAVQENMSAQEGQ---------------------FKQKIADIKGSVDELQIKLKSLQEVRDHLESRN 1017
Cdd:PRK03918 557 KLAE----LEKKLDELEEELAELLKEleelgfesveeleerlkelepFYNEYLELKDAEKELEREEKELKKLEEELDKAF 632
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 665407636 1018 EELKRKLKDAQELQNMVDKERKLNSslREDFDKLEQTKLDLEEQLRAKKVEIDRRSKELGEVTKDCENIRSDLEA 1092
Cdd:PRK03918 633 EELAETEKRLEELRKELEELEKKYS--EEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE 705
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
502-1184 |
1.26e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.24 E-value: 1.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 502 ELQKKLEKQSEDEKIsELQSDIGEIsecclsmELKLADIVNWQAEELRPLDQLQESGVELQ-HHSTTAEESLNVEKPIQE 580
Cdd:TIGR02169 276 ELNKKIKDLGEEEQL-RVKEKIGEL-------EAEIASLERSIAEKERELEDAEERLAKLEaEIDKLLAEIEELEREIEE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 581 QTER--TLTTEYERRIEQLEESLQRAQEElSILEKRKTDENKSLQLEYMAKIETSENENRSKFRaycldLKETQKRYEEQ 658
Cdd:TIGR02169 348 ERKRrdKLTEEYAELKEELEDLRAELEEV-DKEFAETRDELKDYREKLEKLKREINELKRELDR-----LQEELQRLSEE 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 659 LQQTNEKLASVTTQcQVHLDVIKRSLQEKITQAEKERNELA----------VRHKAELEKIRETLKEKESSY--KEKLRQ 726
Cdd:TIGR02169 422 LADLNAAIAGIEAK-INELEEEKEDKALEIKKQEWKLEQLAadlskyeqelYDLKEEYDRVEKELSKLQRELaeAEAQAR 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 727 AEEERDKEISRLEVMRN--------TIAELHKTNSDRE---------------VELEGVKMEKCQL---KKLYDKSMLEL 780
Cdd:TIGR02169 501 ASEERVRGGRAVEEVLKasiqgvhgTVAQLGSVGERYAtaievaagnrlnnvvVEDDAVAKEAIELlkrRKAGRATFLPL 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 781 EQLQctadQKSSDLLPGSSNENID---DLQKKCDQY-------------VQDLELLRgekaELLSEIQ--KING---QHS 839
Cdd:TIGR02169 581 NKMR----DERRDLSILSEDGVIGfavDLVEFDPKYepafkyvfgdtlvVEDIEAAR----RLMGKYRmvTLEGelfEKS 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 840 NTIKKLEEIEAEMITLTTQKELERCEIAEKLETFKSKEADIKEALHCAQLRLHAydklvceyerLKGCLSDSNKLSENLQ 919
Cdd:TIGR02169 653 GAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDE----------LSQELSDASRKIGEIE 722
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 920 KKVERLHAEQLALQEGISGRDSEIKQLRSELKDAIDENKTVREAKVGLENSLKAVQEnmsaQEGQFKQKIADIKgsVDEL 999
Cdd:TIGR02169 723 KEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE----ALNDLEARLSHSR--IPEI 796
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1000 QIKLKSLQEVRDHLESRNEELKRKLKDAQELQNMVDKERKLNSSLREDFDKLEQTKLDLEEQLRAKKVEIDRRSKE---- 1075
Cdd:TIGR02169 797 QAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEEleaa 876
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1076 ---LGEVTKDCENIRSDLEAQTNDFLKERETLNLTISDLRLHNEQLLETSKNYLSDITAANNLNLEMKK------NLHDL 1146
Cdd:TIGR02169 877 lrdLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEipeeelSLEDV 956
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 665407636 1147 TKECKSL------------------------RSDLQSKEEYFQTQKQLLDETISNLKEENRK 1184
Cdd:TIGR02169 957 QAELQRVeeeiralepvnmlaiqeyeevlkrLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
589-1340 |
1.82e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.86 E-value: 1.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 589 EYERRIEQLEESLQRAQ---EELSILEKRKTDENKSLQLEYMAKIETSENENRSKFRAYCLDLKETQKrYEEQLQQTNEK 665
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEeniERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEA-LERQKEAIERQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 666 LASVTTQCQvHLDVIKRSLQEKITQAEKERNELAVRHKAELEKIRETLKEKESSYKEKLRQAEEERDKEISRLEVM---- 741
Cdd:TIGR02169 246 LASLEEELE-KLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAeerl 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 742 RNTIAELHKTNSDREV---ELEGVKMEKCQLKKLYDKSMLELEQLQCTADQKSSDLlpGSSNENIDDLQKKCDQYVQDLE 818
Cdd:TIGR02169 325 AKLEAEIDKLLAEIEElerEIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF--AETRDELKDYREKLEKLKREIN 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 819 LLRGEKAELLSEIQKINGQHSNTIKKLEEIEAEMITLTTQKELERCEIAEKLETFKSKEADIkealhcaqlrlhayDKLV 898
Cdd:TIGR02169 403 ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL--------------SKYE 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 899 CEYERLKGCLSDSNKLSENLQKKVERLHAEQLALQE-----------------GISGRDSEIKQLRSELKDAIDENKTVR 961
Cdd:TIGR02169 469 QELYDLKEEYDRVEKELSKLQRELAEAEAQARASEErvrggraveevlkasiqGVHGTVAQLGSVGERYATAIEVAAGNR 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 962 EAKVGLENSLKAVQE-----------------NMSAQEGQFKQKIADiKGSVD--------ELQIKLKSLQEVRDHLESR 1016
Cdd:TIGR02169 549 LNNVVVEDDAVAKEAiellkrrkagratflplNKMRDERRDLSILSE-DGVIGfavdlvefDPKYEPAFKYVFGDTLVVE 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1017 NEELKRKLKDAQELQNM--------------VDKERKLNSSLREDFDKLEQTKLDLEE------QLRAKKVEIDRRSKEL 1076
Cdd:TIGR02169 628 DIEAARRLMGKYRMVTLegelfeksgamtggSRAPRGGILFSRSEPAELQRLRERLEGlkrelsSLQSELRRIENRLDEL 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1077 GEVTKDCENIRSDLEAQTNDFLKERETLNLTISDLRLHNEQLLETSKNYLSDITAANNLNLEMKKNLHDLTKECKSL-RS 1155
Cdd:TIGR02169 708 SQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLeAR 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1156 DLQSKEEYFQTQKQLLDETISNLKEENRKMEEKLSS-------------GNKALKEDCEKLRSTLESKELILQQNKQELE 1222
Cdd:TIGR02169 788 LSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRltlekeylekeiqELQEQRIDLKEQIKSIEKEIENLNGKKEELE 867
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1223 ERLtvineKNGKNALLDaqlksnetaftsLRKAWIKQSLAIEAANKRSLEMEQKVDKRTREYEELRSTLKTREINFRSEK 1302
Cdd:TIGR02169 868 EEL-----EELEAALRD------------LESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALE 930
|
810 820 830 840
....*....|....*....|....*....|....*....|
gi 665407636 1303 ERMDGTISSLLEDKRNLEEKLC--TVTELLAKLKRELPAL 1340
Cdd:TIGR02169 931 EELSEIEDPKGEDEEIPEEELSleDVQAELQRVEEEIRAL 970
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
815-1076 |
2.21e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 2.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 815 QDLELLRGEkaELLSEIQKINGQHSNTIKKLEEIEAEMITLTTQKElercEIAEKLETFKSKEADIKEALHCAQLRLHAY 894
Cdd:COG1196 220 EELKELEAE--LLLLKLRELEAELEELEAELEELEAELEELEAELA----ELEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 895 DKlvcEYERLKGCLSDSNKLSENLQKKVERLHAEQLALQEGISGRDSEIKQLRSELKDAIDENKTVREAKVGLENSLKAV 974
Cdd:COG1196 294 LA---ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 975 QENMSAQEGQFKQKIADIKGSVDELQIKLKSLQEVRDHLESRNEELKRKLKDAQELQNMVDKERKLNSSLREDFDKLEQT 1054
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260
....*....|....*....|..
gi 665407636 1055 KLDLEEQLRAKKVEIDRRSKEL 1076
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEA 472
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
391-1106 |
2.59e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 65.52 E-value: 2.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 391 LKCQRFQIVKINQEQNLVKEE--DRMRDIIFQLKQEVDGKKNLIEEEKEVINNLRAQITS----LNQIETIK---NQNAK 461
Cdd:pfam15921 122 MQMERDAMADIRRRESQSQEDlrNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLShegvLQEIRSILvdfEEASG 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 462 TKILCEELQTKDTVQTANKQESQEVLTLKTSLAHLKSKVCELQKKLEKQSedekiselqsdigeiSECCLSMELKLadiv 541
Cdd:pfam15921 202 KKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALK---------------SESQNKIELLL---- 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 542 nwQAEELRPLDQLQESGVELQHHSTTAEESLNVEKPIQEQTE------RTLTTEYERRIEQLEESLQRAQEELSilEKRK 615
Cdd:pfam15921 263 --QQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEiiqeqaRNQNSMYMRQLSDLESTVSQLRSELR--EAKR 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 616 TDENKSLQLEYMAKIETSE-NENRS--------------KFRAYCLDLKETQKRYEEQLQQtNEKLASVTTQCQVHLDVI 680
Cdd:pfam15921 339 MYEDKIEELEKQLVLANSElTEARTerdqfsqesgnlddQLQKLLADLHKREKELSLEKEQ-NKRLWDRDTGNSITIDHL 417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 681 KRSLQEKIT----------------QAEKERNELAVRHKAE-LEKIRETLKEKESSyKEKLRQAEEERDKEISRLEVMRN 743
Cdd:pfam15921 418 RRELDDRNMevqrleallkamksecQGQMERQMAAIQGKNEsLEKVSSLTAQLEST-KEMLRKVVEELTAKKMTLESSER 496
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 744 TIAELHKTNSDREVELEGVKMEKCQLKKLYDKSMLELEQLQCTADQKSsdllpgSSNENIDDLQKKCDQYVQDLELLRGE 823
Cdd:pfam15921 497 TVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLR------NVQTECEALKLQMAEKDKVIEILRQQ 570
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 824 kaelLSEIQKINGQHSNTIKKLEEIEAEMITLTTQKELERCEIA-------EKLETFKSKEADIK----EALHCAQLRLH 892
Cdd:pfam15921 571 ----IENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKilkdkkdAKIRELEARVSDLElekvKLVNAGSERLR 646
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 893 AYDKLVCEYERL----KGCLSDSNKLSE-------NLQKKVERLHAEQLALQEGISGRDSEIKQLRSELKDAIDENKTVR 961
Cdd:pfam15921 647 AVKDIKQERDQLlnevKTSRNELNSLSEdyevlkrNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAM 726
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 962 EAKVGLenslkavQENMSAQEGQfkqkiadikgsVDELQIKLKSLQEVRDHLESRNEELK-RKLKDAQELQNMVDKERKL 1040
Cdd:pfam15921 727 KVAMGM-------QKQITAKRGQ-----------IDALQSKIQFLEEAMTNANKEKHFLKeEKNKLSQELSTVATEKNKM 788
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 665407636 1041 NSSLredfDKLEQTKLDLEEQLRAKKVEIDRRSKELGEvtkdCENIRSDLEaQTNDFLKERETLNL 1106
Cdd:pfam15921 789 AGEL----EVLRSQERRLKEKVANMEVALDKASLQFAE----CQDIIQRQE-QESVRLKLQHTLDV 845
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
489-1111 |
9.74e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.42 E-value: 9.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 489 LKTSLAHLKSKVCELQKKLEKQSEDEKISELQSDIGEISEcclsMELKLADIvNWQAEELRplDQLQESGVELQHHSTTA 568
Cdd:COG1196 225 LEAELLLLKLRELEAELEELEAELEELEAELEELEAELAE----LEAELEEL-RLELEELE--LELEEAQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 569 EESLNVEKPIQEQTErtlttEYERRIEQLEesLQRAQEELSILEKRKTDENKSLQLEYMAKIETSENENRSKFRAYCLDL 648
Cdd:COG1196 298 ARLEQDIARLEERRR-----ELEERLEELE--EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 649 KETQKRYEEQLQQTNEKLASVTTQCQVhldviKRSLQEKITQAEKERNELAVRHKAELEKIRETLKEKESSyKEKLRQAE 728
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAE-----LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE-EEEEEEAL 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 729 EERDKEISRLEvmrNTIAELHKTNSDREVELEGVKMEKCQLKKLYDKSMLELEQLQctaDQKSSDLLPGSSNENIDDLQK 808
Cdd:COG1196 445 EEAAEEEAELE---EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLL---EAEADYEGFLEGVKAALLLAG 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 809 KCDQYVQDLELLRGEKAELLSEIQKINGQHSNTIKKLEEIEAEMITLTTQKELERceiAEKLETFKSKEADIKEALHCAQ 888
Cdd:COG1196 519 LRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGR---ATFLPLDKIRARAALAAALARG 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 889 LRLHAYDKLVCEYERLKGCLSDSNKLSENLQKKVERLHAEQLAlqegISGRDSEIKQLRSELKDAIDENKTVREAKVGLE 968
Cdd:COG1196 596 AIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRR----AVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 969 NSLKAVQENMSAQEGQFKQKIADIKGSVDELQIKLKSLQEVRDHLESRNEELKRKLKDAQELQNMVDKERKLNSSLREDF 1048
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1049 DKLEQTKLDLEEQLRAKKVEIDRRSKELGEVT-------KDCENIRSDLEAQTNDFLKERETLNLTISDL 1111
Cdd:COG1196 752 ALEELPEPPDLEELERELERLEREIEALGPVNllaieeyEELEERYDFLSEQREDLEEARETLEEAIEEI 821
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
681-1223 |
1.77e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.39 E-value: 1.77e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 681 KRSLQEKITQAEKERNELAVRHKAELEKIRETLKEKESSyKEKLRQAEEERDKEISRLEVMRNTIAELHKTNSDREVELE 760
Cdd:PRK03918 177 RIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSE-LPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKR 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 761 GVKMEKCQLKKLYDKSMLELEQLQctadqkssdllpgSSNENIDDLQKKCDQYVQdlelLRGEKAELLSEIQKINGQHSN 840
Cdd:PRK03918 256 KLEEKIRELEERIEELKKEIEELE-------------EKVKELKELKEKAEEYIK----LSEFYEEYLDELREIEKRLSR 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 841 TIKKLEEIEAEMitlttqKELErcEIAEKLETFKSKEADIKEALHCAQLRLHAYDK---LVCEYERLKGCLSDSNKlsEN 917
Cdd:PRK03918 319 LEEEINGIEERI------KELE--EKEERLEELKKKLKELEKRLEELEERHELYEEakaKKEELERLKKRLTGLTP--EK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 918 LQKKVERLHAEQLALQEGIS---GRDSEIKQLRSELKDAIDEnktVREAKVGLENSLKAVQENmsaqegqfkqkiaDIKG 994
Cdd:PRK03918 389 LEKELEELEKAKEEIEEEISkitARIGELKKEIKELKKAIEE---LKKAKGKCPVCGRELTEE-------------HRKE 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 995 SVDELQIKLKSLQEVRDHLESRNEELKRKLKdaqELQNMVDKERKLnSSLREDFDKLEQTKLDLE----EQLRAKKVEID 1070
Cdd:PRK03918 453 LLEEYTAELKRIEKELKEIEEKERKLRKELR---ELEKVLKKESEL-IKLKELAEQLKELEEKLKkynlEELEKKAEEYE 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1071 RRSKELGEVTKDCENIRSDLEaQTNDFLKERETLNLTISDLRLHNEQLLETSKNYLSDITAANNLNLEMKKNLHDLTKEC 1150
Cdd:PRK03918 529 KLKEKLIKLKGEIKSLKKELE-KLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLEL 607
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 665407636 1151 KSLRSDLQSKEEYFQTQKQLLDETISNLKEENRKMEEKLSSGNKALK----EDCEKLRSTLESKELILQQNKQELEE 1223
Cdd:PRK03918 608 KDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKkyseEEYEELREEYLELSRELAGLRAELEE 684
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
100-763 |
2.88e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 2.88e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 100 QFDQLRSEIAATRMKLESMLStfshascEVSQKTTDCKRLSEQISTAHDDFGQLQEKYNNLKHKWSSQKLAIDTMQVDYN 179
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEE-------ELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 180 TIQQKYLQLQDEYRHLELRSDEQCQQ---LQDENSKLQAEIGTLKERVEeihSELLEVPNPDTHPEDMELQNQELKKRLS 256
Cdd:TIGR02168 306 ILRERLANLERQLEELEAQLEELESKldeLAEELAELEEKLEELKEELE---SLEAELEELEAELEELESRLEELEEQLE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 257 KLQWEFDEIQLNYECLSNELMSTIQECDALREEH-KQRTTNSDLESMKSSGVGTECSDPENELDTDLLQQFTKLSKSIQQ 335
Cdd:TIGR02168 383 TLRSKVAQLELQIASLNNEIERLEARLERLEDRReRLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEA 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 336 IELTDYSGGRRLFIYNHAEQDQSVPSLKLCLEPAKYLEGDGKQHDASdSVFLKGFLKCQRFQIV--KINQEQN------- 406
Cdd:TIGR02168 463 LEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVK-ALLKNQSGLSGILGVLseLISVDEGyeaaiea 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 407 ---------LVKEEDRMRDIIFQLKQEVDGKKNLIE-----------EEKEVINNLRAQITSLNQ--------------- 451
Cdd:TIGR02168 542 alggrlqavVVENLNAAKKAIAFLKQNELGRVTFLPldsikgteiqgNDREILKNIEGFLGVAKDlvkfdpklrkalsyl 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 452 ------IETIKNQNAKTKILCEE---------------LQTKDTVQTANK--QESQEVLTLKTSLAHLKSKVCELQKKLE 508
Cdd:TIGR02168 622 lggvlvVDDLDNALELAKKLRPGyrivtldgdlvrpggVITGGSAKTNSSilERRREIEELEEKIEELEEKIAELEKALA 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 509 K-----QSEDEKISELQSDIGEISECCLSMELKLADIVNWQAEELRPLDQLQESGVELQHHSTTAEESLNvekpiqeqTE 583
Cdd:TIGR02168 702 ElrkelEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE--------EA 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 584 RTLTTEYERRIEQLEESLQRAQEELSILEKRKTDENKSLQLEYMAKIETSENENRSKFRAYclDLKETQKRYEEQLQQTN 663
Cdd:TIGR02168 774 EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA--ATERRLEDLEEQIEELS 851
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 664 EKLASVTTQcQVHLDVIKRSLQEKITQAEKER---NELAVRHKAELEKIRETLKEKESSYKEKLRQAEEERDK------E 734
Cdd:TIGR02168 852 EDIESLAAE-IEELEELIEELESELEALLNERaslEEALALLRSELEELSEELRELESKRSELRRELEELREKlaqlelR 930
|
730 740
....*....|....*....|....*....
gi 665407636 735 ISRLEVMRNTIAElhKTNSDREVELEGVK 763
Cdd:TIGR02168 931 LEGLEVRIDNLQE--RLSEEYSLTLEEAE 957
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
594-1321 |
4.84e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.31 E-value: 4.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 594 IEQLEESLQRAQEELSILEKRKTDENKSLQLEYMAKIETSENENRSKFRAYC-LDLKETQKRYEEQLQQTNEKLASVTTQ 672
Cdd:PTZ00121 1026 IEKIEELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKdFDFDAKEDNRADEATEEAFGKAEEAKK 1105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 673 CQVHLDVIKRSLQEKITQAEKERNELAVRHKAELEKIRETLKEKESSYKEKLRQAEEERDKEISRLEVMRNTIAELHKTN 752
Cdd:PTZ00121 1106 TETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAE 1185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 753 SDREVElegvkmekcQLKKLYDKSMLElEQLQCTADQKSSDLLPGSSNENIDDLQKKCDQYVQDLELLRGEKAELLSEIQ 832
Cdd:PTZ00121 1186 EVRKAE---------ELRKAEDARKAE-AARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIR 1255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 833 KIN-------GQHSNTIKKLEEIEAEMITLTTQK----ELERCEIAEKLETFKSKEADIKEAlhcaqlrlhayDKLVCEY 901
Cdd:PTZ00121 1256 KFEearmahfARRQAAIKAEEARKADELKKAEEKkkadEAKKAEEKKKADEAKKKAEEAKKA-----------DEAKKKA 1324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 902 ERLKGCLSDSNKLSENLQKKVERLHAEQLALQEgiSGRDSEIKQLRSELKDAiDENKTVREAKVGLENSLKAVQENMSAQ 981
Cdd:PTZ00121 1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAAD--EAEAAEEKAEAAEKKKE-EAKKKADAAKKKAEEKKKADEAKKKAE 1401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 982 EGQFK----QKIADIKGSVDELQiklKSLQEVRdhlesRNEELKRKL---KDAQELQNMVDKERKLNSSLR--EDFDKLE 1052
Cdd:PTZ00121 1402 EDKKKadelKKAAAAKKKADEAK---KKAEEKK-----KADEAKKKAeeaKKADEAKKKAEEAKKAEEAKKkaEEAKKAD 1473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1053 QTKLDLEE-----QLRAKKVEIDRRSKEL---GEVTKDCENIRSDLEAQTNDFLKEREtlnltisDLRLHNEQLLETSKN 1124
Cdd:PTZ00121 1474 EAKKKAEEakkadEAKKKAEEAKKKADEAkkaAEAKKKADEAKKAEEAKKADEAKKAE-------EAKKADEAKKAEEKK 1546
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1125 YLSDITAANNL-NLEMKKNLHDLTKECKSLRSDLQSKEEYFQTQKQLLDETISNLKEENRKMEEKLSSGNKAlKEDCEKL 1203
Cdd:PTZ00121 1547 KADELKKAEELkKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEA-KIKAEEL 1625
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1204 RSTLESKELILQQNKQELEE--RLTVINEKNGKNALLDAQLKSNET----AFTSLRKAWIKQSLAIEAANKRSLEMEQKV 1277
Cdd:PTZ00121 1626 KKAEEEKKKVEQLKKKEAEEkkKAEELKKAEEENKIKAAEEAKKAEedkkKAEEAKKAEEDEKKAAEALKKEAEEAKKAE 1705
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 665407636 1278 DKRTREYEELRSTLKTREINfRSEKERMDGTISSLLEDKRNLEE 1321
Cdd:PTZ00121 1706 ELKKKEAEEKKKAEELKKAE-EENKIKAEEAKKEAEEDKKKAEE 1748
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
967-1262 |
1.06e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 1.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 967 LENSLKAVQENMSAQEGQFKQKIADIKGSVDELQIKLKSLQEVRDHLESRNEELKRKLKDAQELQNMVDKERKLNSSLRE 1046
Cdd:COG1196 237 LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1047 DFDKLEQTKLDLEEQLRAKKVEIDRRSKELgevtKDCENIRSDLEAQTNDFLKERETLNLTISDLRLHNEQLLETSKNYL 1126
Cdd:COG1196 317 RLEELEEELAELEEELEELEEELEELEEEL----EEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1127 SDITAANNLNLEMKKNLHDLTKECKSLRSDLQSKEEYFQTQKQLLDETISNLKEENRKMEEklssgnkaLKEDCEKLRST 1206
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE--------LEEEEEALLEL 464
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 665407636 1207 LESKELILQQNKQELEERLTVINEKNGKNALLDAQLKSNETAFTSLRKAWIKQSLA 1262
Cdd:COG1196 465 LAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
578-1104 |
1.06e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 1.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 578 IQEQTERTLTTEYERRIEQLEESLQRAQEELSILEKRKTDENKSLQLeymakIETSENENRSKFRAYCLDLKETQKRYEE 657
Cdd:COG1196 218 LKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAE-----LEAELEELRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 658 QLQQTNEKLASVTtqcqvHLDVIKRSLQEKITQAEKERNELAvRHKAELEKIRETLKEKESSYKEKLRQAEEERDKEISR 737
Cdd:COG1196 293 LLAELARLEQDIA-----RLEERRRELEERLEELEEELAELE-EELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 738 LEVMRNTIAELHKTNSDREVELEGVKMEKCQLKKLYDKSMLELEQLQCTADQKSSDLLpgSSNENIDDLQKKCDQYVQDL 817
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE--ELEEALAELEEEEEEEEEAL 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 818 ELLRGEKAELLSEIQKINGQHSNTIKKLEEIEAEMITLTTQKELERCEIAEKLETFKSKEADIKEALHCAQLRLHAYDKL 897
Cdd:COG1196 445 EEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAG 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 898 VCEYERLKG--------------CLSDSNKLSENLQKKVERL------------------------HAEQLALQEGISGR 939
Cdd:COG1196 525 AVAVLIGVEaayeaaleaalaaaLQNIVVEDDEVAAAAIEYLkaakagratflpldkiraraalaaALARGAIGAAVDLV 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 940 DSEIKQLRSELKDAIDE----------NKTVREAKVGLENSLKAVQENMSAQEGQFKQKIADIKGSVDELQIKLKSLQEV 1009
Cdd:COG1196 605 ASDLREADARYYVLGDTllgrtlvaarLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEEL 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1010 RDHLESRNEELKRKLKDAQELQNMVDKERKLNSSLREDFDKLEQTKLDLEEQLRAKKVEIDRRSKELGEVTKDCENIRSD 1089
Cdd:COG1196 685 AERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEE 764
|
570
....*....|....*
gi 665407636 1090 LEAQTNDFLKERETL 1104
Cdd:COG1196 765 LERELERLEREIEAL 779
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
399-1318 |
1.37e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.77 E-value: 1.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 399 VKINQEQNLVKEEDRMRdiiFQLKQEVDGKKNLIEEEKEVINNLRAQITS-LNQIETIKNQNAKTKILCEELQTKDTVQT 477
Cdd:PTZ00121 1018 IDFNQNFNIEKIEELTE---YGNNDDVLKEKDIIDEDIDGNHEGKAEAKAhVGQDEGLKPSYKDFDFDAKEDNRADEATE 1094
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 478 ANKQESQEVLTLKTSLAHLKSKVCELQKKLEKQSEDEKISELQsDIGEISECCLSMELKLADIVNwQAEELRPLDQLQES 557
Cdd:PTZ00121 1095 EAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAE-DARKAEEARKAEDAKRVEIAR-KAEDARKAEEARKA 1172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 558 gvELQHHSTTAEESLNVEKpiqeqTERTLTTEYERRIEQLeeslQRAQEELSILEKRKTDENKslQLEYMAKIETSENEN 637
Cdd:PTZ00121 1173 --EDAKKAEAARKAEEVRK-----AEELRKAEDARKAEAA----RKAEEERKAEEARKAEDAK--KAEAVKKAEEAKKDA 1239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 638 RSKFRAycldlkeTQKRYEEQLQQTNEKLASVTTQCQVHLDVIKRSLQEKITQAEKERNELAVRHKAELEKIRETLKEKE 717
Cdd:PTZ00121 1240 EEAKKA-------EEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAE 1312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 718 SSYK-EKLRQAEEERDKeisRLEVMRNTIAELHKTN--SDREVELEGVKMEKCQLKKLYDKSMLELEQLQCTADQKSSDl 794
Cdd:PTZ00121 1313 EAKKaDEAKKKAEEAKK---KADAAKKKAEEAKKAAeaAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE- 1388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 795 lpgsSNENIDDLQKKCDQYVQDLELLRgeKAELLSEIQKINGQHSNTIKKLEEIEAEMITLTTQKELER-CEIAEKLETF 873
Cdd:PTZ00121 1389 ----EKKKADEAKKKAEEDKKKADELK--KAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKkAEEAKKAEEA 1462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 874 KSKEADIKEAlhcAQLRLHAYDKLVCEyerlkgclsDSNKLSENLQKKVERLHAEQLALQEGISGRDSEIKQLRSELKDA 953
Cdd:PTZ00121 1463 KKKAEEAKKA---DEAKKKAEEAKKAD---------EAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKA 1530
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 954 iDENKTVREAKVGLE----NSLKAVQENMSAQEgqfKQKIADIKGSVDELQIKLKSLQEVRDHLESRNEELKR-----KL 1024
Cdd:PTZ00121 1531 -EEAKKADEAKKAEEkkkaDELKKAEELKKAEE---KKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKlyeeeKK 1606
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1025 KDAQELQNMVDKERKLNSSLREDFDKLEQTKLDLEEQLRAKKVEIDRRSKELGEVTKDCENIRSDLEAQTNDFLKEREtl 1104
Cdd:PTZ00121 1607 MKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAE-- 1684
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1105 nltiSDLRLHNEQLLETSKNylsditaaNNLNLEMKKNLHDLTKECKSLRSDLQSKEEYFQTQKQLLDETiSNLKEENRK 1184
Cdd:PTZ00121 1685 ----EDEKKAAEALKKEAEE--------AKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED-KKKAEEAKK 1751
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1185 MEEKLSSGNKALKEDCEKLRSTLESKELILQQNKQELEERLTVINEKNGKNALLDAQL-----KSNETAFTSLRKAWIKQ 1259
Cdd:PTZ00121 1752 DEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANiieggKEGNLVINDSKEMEDSA 1831
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....*....
gi 665407636 1260 SLAIEAANKRSLEMEQKVDKRTREYEELRSTLKTREINFRSEKERMDGTISSLLEDKRN 1318
Cdd:PTZ00121 1832 IKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEI 1890
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
801-1321 |
1.38e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 59.69 E-value: 1.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 801 ENIDDLQKKCDQYVQDLELLRGEKAELLSEIQKINGQHSNTIKKLEEIEAEMITLTTQKEL---ERCEIAEKLETFKSKE 877
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEieeLEKELESLEGSKRKLE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 878 ADIK-------------EALHCAQLRLHAYDKLVCEYERLKGCLSDSNKLSENLQKKVERLHAEQLALQEGISgrdsEIK 944
Cdd:PRK03918 259 EKIReleerieelkkeiEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK----ELE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 945 QLRSELKDAIDENKTVREAKVGLENSLKAVQENMSAQEGQFKQKIADIKGSVDELQIKLKSLQEVRDHLESRNEELKRKL 1024
Cdd:PRK03918 335 EKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARI 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1025 KdaqELQNMVDKERKLNSSLREDFDKL-----EQTKLDLEEQLRAKKVEIDRRSKELGEVTKDCENIRSDLEAQTNDFLK 1099
Cdd:PRK03918 415 G---ELKKEIKELKKAIEELKKAKGKCpvcgrELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKK 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1100 ERETLNL-TISDLRLHNEQllETSKNYLSDITAANNLNLEMKKNLHDLTKECKSLRSDLQSKEEyFQTQKQLLDETISNL 1178
Cdd:PRK03918 492 ESELIKLkELAEQLKELEE--KLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE-LKKKLAELEKKLDEL 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1179 KEENRKMEEKLSS-GNKALKEDCEKLRS--TLESKELILQQNKQELEERLTVINEKNGKNALLDAQLKSNETAFTSLRKA 1255
Cdd:PRK03918 569 EEELAELLKELEElGFESVEELEERLKElePFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKE 648
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 665407636 1256 wikqslaIEAANKRSLEMEQKvdKRTREYEELRSTLKTREINFRSEKERMDGTISSLLEDKRNLEE 1321
Cdd:PRK03918 649 -------LEELEKKYSEEEYE--ELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE 705
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
845-1173 |
1.51e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 1.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 845 LEEIEAEMITLTTQkelerceiAEKLETFKSKEADIKEAlhcaQLRLhaydkLVCEYERLKGCLSDSNKLSENLQKKVER 924
Cdd:TIGR02168 195 LNELERQLKSLERQ--------AEKAERYKELKAELREL----ELAL-----LVLRLEELREELEELQEELKEAEEELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 925 LHAEQLALQEGISGRDSEIKQLRSELKDAIDENKTVREAKVGLENSLKAVQENMsaqegqfkqkiadikgsvDELQIKLK 1004
Cdd:TIGR02168 258 LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL------------------ANLERQLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1005 SLQEVRDHLESRNEELKRKLKDAQ----ELQNMVDKERKLNSSLREDFDKLEQTKLDLEEQLRAKKVEIDRRSKELGEVT 1080
Cdd:TIGR02168 320 ELEAQLEELESKLDELAEELAELEekleELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLN 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1081 KDCENIRSDLE----------------------AQTNDFLKERETLNLTISDLRLHNEQLLETSKNYLSDITAANNLNLE 1138
Cdd:TIGR02168 400 NEIERLEARLErledrrerlqqeieellkkleeAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDA 479
|
330 340 350
....*....|....*....|....*....|....*
gi 665407636 1139 MKKNLHDLTKECKSLRSDLQSKEEYFQTQKQLLDE 1173
Cdd:TIGR02168 480 AERELAQLQARLDSLERLQENLEGFSEGVKALLKN 514
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
652-1027 |
2.17e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 2.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 652 QKRYEEQLQQTNEKLASvttqcqvhLDVIKRSLQEKITQAEKERNELAVRHKAELEKIRETLKEKEssykeklrQAEEER 731
Cdd:TIGR02169 669 SRSEPAELQRLRERLEG--------LKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIE--------QLEQEE 732
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 732 DKEISRLEVMRNTIAELhktnsdrEVELEGVKMEKCQLKKLYDKSMLELEQLQctadqkssdllpgssnENIDDLQKKcd 811
Cdd:TIGR02169 733 EKLKERLEELEEDLSSL-------EQEIENVKSELKELEARIEELEEDLHKLE----------------EALNDLEAR-- 787
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 812 qyvqdleLLRGEKAELLSEIQKINGQHSNTIKKLEEIEAEMITLTTQKELERCEIAEKLET---FKSKEADIKEALHCAQ 888
Cdd:TIGR02169 788 -------LSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQridLKEQIKSIEKEIENLN 860
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 889 LRLhayDKLVCEYERLKGCLSDSNKLSENLQKKVERLHAEQLALQEGISGRDSEIKQLRSELKD-------------AID 955
Cdd:TIGR02169 861 GKK---EELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSElkaklealeeelsEIE 937
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 956 ENKTVREAKVGLENSLKAVQENMSAQEGQFK----------QKIADIKGSVDELQIKLKSLQEVRDHLESRNEELKRKLK 1025
Cdd:TIGR02169 938 DPKGEDEEIPEEELSLEDVQAELQRVEEEIRalepvnmlaiQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKR 1017
|
..
gi 665407636 1026 DA 1027
Cdd:TIGR02169 1018 EV 1019
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
572-1332 |
2.22e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.98 E-value: 2.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 572 LNVEKPIQE-QTERTLTTEYERRIEQLEE----SLQRAQEELSILEKRKTD--ENKSLQLEYMAKIETSENENRSKFRAY 644
Cdd:pfam15921 113 IDLQTKLQEmQMERDAMADIRRRESQSQEdlrnQLQNTVHELEAAKCLKEDmlEDSNTQIEQLRKMMLSHEGVLQEIRSI 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 645 CLDLKET--QKRYEEQLQQTN--EKLASVTTQCQVHLDVIKRSLQEKITQAEKERNELavrhKAELEKIRETLKEKessY 720
Cdd:pfam15921 193 LVDFEEAsgKKIYEHDSMSTMhfRSLGSAISKILRELDTEISYLKGRIFPVEDQLEAL----KSESQNKIELLLQQ---H 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 721 KEKLRQAEEERDKEISRL-EVMRNTIAELHKTNSDREVELEgvkmekcQLKKLYDKSMLELEQLQCTADQKSSDLlpgss 799
Cdd:pfam15921 266 QDRIEQLISEHEVEITGLtEKASSARSQANSIQSQLEIIQE-------QARNQNSMYMRQLSDLESTVSQLRSEL----- 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 800 NENIDDLQKKCDQYVQDLELLRGEKAELLSEIQKINGQHSNTIKKLEEIEAEMitLTTQKELErceiAEKLETFKSKEAD 879
Cdd:pfam15921 334 REAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADL--HKREKELS----LEKEQNKRLWDRD 407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 880 IKEALHCAQLRLHAYDKLVcEYERLKGCLsdsNKLSENLQKKVERLHAEQLALQEGISGRDSEIKQLRS--ELKDAIDEN 957
Cdd:pfam15921 408 TGNSITIDHLRRELDDRNM-EVQRLEALL---KAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLEStkEMLRKVVEE 483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 958 KTVReaKVGLENSLKAVQE---NMSAQEGQFKQKIADIKGSVDELQIKLKSLQevrdHLESRNEELKRKLKDAQELQNMV 1034
Cdd:pfam15921 484 LTAK--KMTLESSERTVSDltaSLQEKERAIEATNAEITKLRSRVDLKLQELQ----HLKNEGDHLRNVQTECEALKLQM 557
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1035 DKERKLNSSLREDFDKLEQTKLDLEEQLRAKKVEIDRRSKELGEvtkdcenirSDLEAQTNDFLKERE-----TLNLTIS 1109
Cdd:pfam15921 558 AEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEIND---------RRLELQEFKILKDKKdakirELEARVS 628
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1110 DLRLHNEQLLETSKNYLSDITaannlnlEMKKNLHDLTKECKSLRSDLQSKEEYFQtqkqLLDETISNLKEENRKMEEKL 1189
Cdd:pfam15921 629 DLELEKVKLVNAGSERLRAVK-------DIKQERDQLLNEVKTSRNELNSLSEDYE----VLKRNFRNKSEEMETTTNKL 697
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1190 SSGNKALKEDCEKLRSTLESKELILQQNKQELEERLTVINEKNGKNALLDAQLKSNETAFTSlrkawikqslaieaANKR 1269
Cdd:pfam15921 698 KMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTN--------------ANKE 763
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 665407636 1270 SLEMEQKVDKRTREYeelrSTLKTreinfrsEKERMDGTISSLLEDKRNLEEKLCTVTELLAK 1332
Cdd:pfam15921 764 KHFLKEEKNKLSQEL----STVAT-------EKNKMAGELEVLRSQERRLKEKVANMEVALDK 815
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
481-1113 |
4.05e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 58.31 E-value: 4.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 481 QESQEVLTLKTSLAHLKSKVCELQKKLEKQSED------EKISELQSDIGEISECC--LSMELKLADiVNWQA--EELRP 550
Cdd:pfam12128 248 QEFNTLESAELRLSHLHFGYKSDETLIASRQEErqetsaELNQLLRTLDDQWKEKRdeLNGELSAAD-AAVAKdrSELEA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 551 LD----QLQESGVELQHHSTTAEESL-----NVEKPIQEQTE--RTLTTEYERRIEQLEESLQRaqeELSILEKR--KTD 617
Cdd:pfam12128 327 LEdqhgAFLDADIETAAADQEQLPSWqseleNLEERLKALTGkhQDVTAKYNRRRSKIKEQNNR---DIAGIKDKlaKIR 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 618 ENKSLQLEYM-AKIETSENENRSKFRAYCLDLKETQKRYEEQLQQTNEKLASVTTQCQVHLDviKRSLQEKItqaEKERN 696
Cdd:pfam12128 404 EARDRQLAVAeDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQ--LENFDERI---ERARE 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 697 ELAVRHKAelekiRETLKEKESSYKEKLRQAEEERDKEISRLEVMRNTIAELHKTNSDREVELEGVKMEKCQLKKLYDKS 776
Cdd:pfam12128 479 EQEAANAE-----VERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGK 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 777 MLELEQL-QCTADQKSSDLLPGSSNE----NIDDLQKKCDQYVQDLELLRGEKAELLSEIQKingQHSntikKLEEIEAE 851
Cdd:pfam12128 554 VISPELLhRTDLDPEVWDGSVGGELNlygvKLDLKRIDVPEWAASEEELRERLDKAEEALQS---ARE----KQAAAEEQ 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 852 MITLTTQkelerceiaekLETFKSKEADIKEALHCAQLRLhaydklvceyERLkgclsdsNKLSENLQKKVER-LHAEQL 930
Cdd:pfam12128 627 LVQANGE-----------LEKASREETFARTALKNARLDL----------RRL-------FDEKQSEKDKKNKaLAERKD 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 931 ALQEGISGRDSEIKQLRSELKDAIDENK-TVREAKVGLENSLKAVQENMSAQEGQFKQKIADIKGSVDElqiKLKSLQEV 1009
Cdd:pfam12128 679 SANERLNSLEAQLKQLDKKHQAWLEEQKeQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKA---ELKALETW 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1010 RDH-LESRNEELKRKLKDAQELQNM---VDKERKLNSSLREDFDKLEQT----KLDLEEQLRAKKVEIDRRSKELGEVTK 1081
Cdd:pfam12128 756 YKRdLASLGVDPDVIAKLKREIRTLerkIERIAVRRQEVLRYFDWYQETwlqrRPRLATQLSNIERAISELQQQLARLIA 835
|
650 660 670
....*....|....*....|....*....|....
gi 665407636 1082 DCENIRSDLEAQ--TNDFLKERETLNLTISDLRL 1113
Cdd:pfam12128 836 DTKLRRAKLEMErkASEKQQVRLSENLRGLRCEM 869
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
401-1246 |
9.86e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 56.90 E-value: 9.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 401 INQEQNLVKEEDRMRDIIFQLKQEVDGKKNLI-----EEEKEVINNLRAQITSLNQIETIKNQNAKTKILCEELQTKDTV 475
Cdd:pfam02463 196 KLQELKLKEQAKKALEYYQLKEKLELEEEYLLyldylKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENK 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 476 QTANKQESQEVLTLKTSLAHLKSKVCELQKKLEKQSEDEKISELQSDIGEISEcclsmelkladivnwqaeelrPLDQLQ 555
Cdd:pfam02463 276 EEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEK---------------------ELKKEK 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 556 ESGVELQHHSTTAEESLNVEKPIQEQTERTLTTEYERRIEqLEESLQRAQEELSILEKRKtdENKSLQLEYMAKIETSEN 635
Cdd:pfam02463 335 EEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEE-LLAKKKLESERLSSAAKLK--EEELELKSEEEKEAQLLL 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 636 ENRSKFRAYCLDLKETQKRYEEQLQQTNEKLASVTTQCQVHLDV-----IKRSLQEKITQAEKERNELAVRHKAELEKIR 710
Cdd:pfam02463 412 ELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKqelklLKDELELKKSEDLLKETQLVKLQEQLELLLS 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 711 ETLKEKESSYKEKLRQAEEERDKEISRLEVMRNTIAELHKTNSDREVELEGVKMEKCQLKKLYDKSMLELEQLQCTADQK 790
Cdd:pfam02463 492 RQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALT 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 791 SSDLLPGSSNENIDDLQKKCDQYVQDLELLRGEKAELLSEIQKINGQHSNTIKKLEEIEAEMITLTTQKELERCEIAEKL 870
Cdd:pfam02463 572 ELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKG 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 871 ETFKSKEADIKEALHCAQLRLHAYDKLVCEYERLKGCLSDSNKLSENLQKKVERLHAEQLALQEGISGRDSEIKQLRSEL 950
Cdd:pfam02463 652 VSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQ 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 951 KDAIDENKTVR-EAKVGLENSLKAVQENMSAQEGQFKQKIADIKGSVDELQIKLKSLQEVRDHLESRNEELKRKLKDAQE 1029
Cdd:pfam02463 732 DKINEELKLLKqKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELK 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1030 LQNMVDKER---KLNSSLREDFDKLEQTKLDLEEQLRAKKVEIDRRSKELGEVTKDCENIRSDLEAQTNDFLKERETLNL 1106
Cdd:pfam02463 812 EEAELLEEEqllIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESK 891
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1107 TISDLRLHNEQLLETSKNYLSDItAANNLNLEMKKNLHDLTKECKSLR--SDLQSKEEYFQTQKQLLDETISNLKEENRK 1184
Cdd:pfam02463 892 EEKEKEEKKELEEESQKLNLLEE-KENEIEERIKEEAEILLKYEEEPEelLLEEADEKEKEENNKEEEEERNKRLLLAKE 970
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 665407636 1185 MEEKLSSGNKALKEDCEKLRSTLESKELILQQNKQELEERLTVINEKNGKNALLDAQLKSNE 1246
Cdd:pfam02463 971 ELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLELFVSINKG 1032
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
480-1287 |
1.22e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 56.52 E-value: 1.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 480 KQESQEVLTLKTSLAHLKSKVCELQKKLEKQSEDEKISELQSDIGEISECCLSmELKLADIVNWQAEELRPLDQLQESGV 559
Cdd:pfam02463 172 KEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEE-YLLYLDYLKLNEERIDLLQELLRDEQ 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 560 ELQHHSTtaEESLNVEKPIQEQTERTLTTEYERRIEQLEESLQRAQEELSILEKRKTDENKSLQLEYMAKIETS------ 633
Cdd:pfam02463 251 EEIESSK--QEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEkkkaek 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 634 ENENRSKFRAYCLDLKETQKRYEEQLQQTNEKLASVTTQCQVHLDVIKRSLQEKI--TQAEKERNELAVRHKAELEKIRE 711
Cdd:pfam02463 329 ELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESerLSSAAKLKEEELELKSEEEKEAQ 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 712 TLKEKESSYKEKLRQAEEERDKEISRLEVMRNTIAELHKTNSDREVELEGVKMEKCQLKK-----LYDKSMLELEQLQCT 786
Cdd:pfam02463 409 LLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKksedlLKETQLVKLQEQLEL 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 787 ADQKSSDLLPGSSNENIDDLQKKCDQYVQDLELLRGEKAELLS---EIQKINGQHSNTIKKLEEIEAEMITLTTQKELER 863
Cdd:pfam02463 489 LLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLgdlGVAVENYKVAISTAVIVEVSATADEVEERQKLVR 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 864 CEIAEKLETFKSKEADIKEALHCAQLRLHAYDKLVCEYERLKGCLSDSNKLSENLQKKVERLHAEQLALQEGISGRDSEI 943
Cdd:pfam02463 569 ALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGL 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 944 KQLRSEL-----------KDAIDENKTVREAKVGLENSLKAVQENMSAQEGQFKQKIADIKGSVDELQIKLKSLQEVRDH 1012
Cdd:pfam02463 649 RKGVSLEeglaeksevkaSLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQ 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1013 LESRNEELKRKLKDAQELQNMVDKERKLNSSLREDFDKLEQTKLDLEEQLRAKKVEIDRRSKELGEVTKDCENIRSDLEA 1092
Cdd:pfam02463 729 EAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEE 808
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1093 QTNDFLKERETLNLTISDLRLHNEQLLETSKNYLSDITAANNLNLEMKK-NLHDLTKECKSLRSDLQSKEEYFQTQKQLL 1171
Cdd:pfam02463 809 ELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELErLEEEITKEELLQELLLKEEELEEQKLKDEL 888
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1172 DETISNLKEENRKMEEKLSSGNKALKEDCEKLRSTLESKELILQQNKQELEERLTVINEKNGKNALLDAQLKSN---ETA 1248
Cdd:pfam02463 889 ESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNkrlLLA 968
|
810 820 830
....*....|....*....|....*....|....*....
gi 665407636 1249 FTSLRKAWIKQSLAIEAANKRSLEMEQKVDKRTREYEEL 1287
Cdd:pfam02463 969 KEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKL 1007
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
591-975 |
1.55e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 1.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 591 ERRIEQLEESLQRAQEELSILEKRKtdenKSLQ------LEYMA-KIETSENENRSKFRAYcLDLKETQKRYEEQLQQTN 663
Cdd:COG1196 178 ERKLEATEENLERLEDILGELERQL----EPLErqaekaERYRElKEELKELEAELLLLKL-RELEAELEELEAELEELE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 664 EKLASVTTQcQVHLDVIKRSLQEKITQAEKERNEL------AVRHKAELEKIRETLKEKESSYKEKLRQAEEERDKEISR 737
Cdd:COG1196 253 AELEELEAE-LAELEAELEELRLELEELELELEEAqaeeyeLLAELARLEQDIARLEERRRELEERLEELEEELAELEEE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 738 LEVMRNTIAELHKTNSDREVELEGVKMEKCQLKKLYDKSMLELEQLQCTADQKSSDLLpgSSNENIDDLQKKCDQYVQDL 817
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL--EALRAAAELAAQLEELEEAE 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 818 ELLRGEKAELLSEIQKINgqhSNTIKKLEEIEAEMITLTTQKELERCEIAEKLETFKSKEADIKEALHCAQLRLHAYDKL 897
Cdd:COG1196 410 EALLERLERLEEELEELE---EALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 665407636 898 VCEYERLkgcLSDSNKLSENLQKKVERLHAEQLALQEGISGRDSEIKQLRSELKDAIDENKTVREAKVGLENSLKAVQ 975
Cdd:COG1196 487 AEAAARL---LLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAA 561
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
183-1111 |
2.79e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 2.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 183 QKYLQLQDEYRHLELR-SDEQCQQLQDENSKLQAEIGTLKERVEEIHSELLEVpnpdthpedmELQNQELKKRLSKLQWE 261
Cdd:TIGR02168 213 ERYKELKAELRELELAlLVLRLEELREELEELQEELKEAEEELEELTAELQEL----------EEKLEELRLEVSELEEE 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 262 FDEIQLNYECLSNElmstIQECDALREEHKQRTTNsdlesmkssgvgtecsdpeneldtdLLQQFTKLSKSIQQIEltdy 341
Cdd:TIGR02168 283 IEELQKELYALANE----ISRLEQQKQILRERLAN-------------------------LERQLEELEAQLEELE---- 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 342 sggrrlfiynhaeqdqsvpslklclepakylegdgkqhdasdsvflkgflkcqrfqivkiNQEQNLVKEEDRMRDIIFQL 421
Cdd:TIGR02168 330 ------------------------------------------------------------SKLDELAEELAELEEKLEEL 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 422 KQEVDGKKNLIEEEKEVINNLRAQITSLNQietiKNQNAKTKILCEELQtkdtvQTANKQESQEVLTLKTSLAHLKSKVC 501
Cdd:TIGR02168 350 KEELESLEAELEELEAELEELESRLEELEE----QLETLRSKVAQLELQ-----IASLNNEIERLEARLERLEDRRERLQ 420
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 502 ELQKKLEKQSEDEKISELQSDIGEISECCLSMELKLADIVNWQAEELRPLDQLQESGVELQHHSTTAEESLNVEKPIQEQ 581
Cdd:TIGR02168 421 QEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQEN 500
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 582 TErtltTEYERRIEQLEESLQRAQEELSILEKRKTDEnkslqlEYMAKIETSENENRSkfrAYCLDLKETQKRYEEQLQQ 661
Cdd:TIGR02168 501 LE----GFSEGVKALLKNQSGLSGILGVLSELISVDE------GYEAAIEAALGGRLQ---AVVVENLNAAKKAIAFLKQ 567
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 662 TNEKLASVttqcqVHLDVIKRSLQEKITQAEKERNELAVRHKAELEKIRETLKEKES----------SYKEKLRQAEEER 731
Cdd:TIGR02168 568 NELGRVTF-----LPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvdDLDNALELAKKLR 642
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 732 DKE---------ISRLEVMRNTIAELHKTNSDREVELEGVKMEKCQLKKLYDksmlELEQLQCTADQKSSDLlpgssNEN 802
Cdd:TIGR02168 643 PGYrivtldgdlVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIA----ELEKALAELRKELEEL-----EEE 713
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 803 IDDLQKKCDQYVQDLELLRGEKAELLSEIQKINGQHSNTIKKLEEIEAEMITLTTQKELERCEIAEKLETFKSKEADIKE 882
Cdd:TIGR02168 714 LEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ 793
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 883 ALHCAQLRLHAYDKLVCEYERLKGCLSDSNKLSENLQKKVERLHAEQLALQEGISGRDSEIKQLRSELKDAIDENKTVRE 962
Cdd:TIGR02168 794 LKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES 873
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 963 AKVGLENSLKAVQENMSAQEGQFKQKIADIKGSVDELQIKLKSLQEVRDHLESRNEELKRKLKDAQELQNMVDKERKLNS 1042
Cdd:TIGR02168 874 ELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTL 953
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 665407636 1043 slrEDFDKLEQTKLDLEEQLRAKKVEIDRRSKELGEVT-------KDCENIRSDLEAQTNDFLKERETLNLTISDL 1111
Cdd:TIGR02168 954 ---EEAEALENKIEDDEEEARRRLKRLENKIKELGPVNlaaieeyEELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
584-957 |
3.09e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 3.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 584 RTLTTEYERRIEQLEESLQRAQEELSILEK-----RKTDENKSLQLEYMAKIETSENENRSKFRAYCLDLKETQKRYEEQ 658
Cdd:TIGR02168 669 NSSILERRREIEELEEKIEELEEKIAELEKalaelRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 659 LQQTNEKLASVTTQCQVHLDVIKrSLQEKITQAEKERNEL---AVRHKAELEKIRETLKEKESSY---KEKLRQAEEERD 732
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLE-EAEEELAEAEAEIEELeaqIEQLKEELKALREALDELRAELtllNEEAANLRERLE 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 733 KEISRLEVMRNTIAELHKTNSDREVELEGVKMEKCQLKKLYDKSMLELEQLQCTADQKSSDLLPGSS-----NENIDDLQ 807
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSeleelSEELRELE 907
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 808 KKCDQYVQDLELLRGEKAELLSEIQKINGQHSNTIKKLEE---IEAEMI-TLTTQKELERCEIAEKLETFKSKEADIKEa 883
Cdd:TIGR02168 908 SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEeysLTLEEAeALENKIEDDEEEARRRLKRLENKIKELGP- 986
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 665407636 884 lhcaqLRLHAYDklvcEYERLKGCLSDSNKLSENLQKKVERlhaeqlaLQEGISGRDSEIKQLRSELKDAIDEN 957
Cdd:TIGR02168 987 -----VNLAAIE----EYEELKERYDFLTAQKEDLTEAKET-------LEEAIEEIDREARERFKDTFDQVNEN 1044
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
842-1344 |
3.33e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.07 E-value: 3.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 842 IKKLEEIEAEMITLTTQKELERCEIAEKLETFKSKEADIKEalhcaqlRLHAYDKLVCEYERLKGCLSDSNKLSENLQKK 921
Cdd:PRK03918 181 LEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELRE-------ELEKLEKEVKELEELKEEIEELEKELESLEGS 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 922 VERLHAEQLALQEGISGRDSEIKQLRSELKD--AIDENKTVREAKVGLENSLKAVQENMSAQEGQFKQKIADIKGSVDEL 999
Cdd:PRK03918 254 KRKLEEKIRELEERIEELKKEIEELEEKVKElkELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEL 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1000 QIKLKSLQEVRDHLESRNEELKRKLKDAQELQNMVDKERKLNSsLREDFDKLEQTKLDLE-EQLRAKKVEIDRRSKELGE 1078
Cdd:PRK03918 334 EEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELER-LKKRLTGLTPEKLEKElEELEKAKEEIEEEISKITA 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1079 VTKDCENIRSDLEAQTNDFLKERETLNLTISDLRLHNEqlLETSKNYLSDITAANNLNLEMKKNLHDLTKECKSLRSDLq 1158
Cdd:PRK03918 413 RIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHR--KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVL- 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1159 SKEEYFQTQKQLLDETIS--------NLKEENRKMEE---------KLSSGNKALKEDCEKLRStLESKELILQQNKQEL 1221
Cdd:PRK03918 490 KKESELIKLKELAEQLKEleeklkkyNLEELEKKAEEyeklkekliKLKGEIKSLKKELEKLEE-LKKKLAELEKKLDEL 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1222 EERLTVINEKNGKNALLDaqLKSNETAFTSLRKAWiKQSLAIEAANKRSLEMEQKVDKRTREYEELRSTLKTREINFRSE 1301
Cdd:PRK03918 569 EEELAELLKELEELGFES--VEELEERLKELEPFY-NEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEEL 645
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 665407636 1302 KERMDGTISSLLEDK-RNLEEKLCTVTELLAKLKRELPALHTQK 1344
Cdd:PRK03918 646 RKELEELEKKYSEEEyEELREEYLELSRELAGLRAELEELEKRR 689
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
900-1337 |
4.11e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.68 E-value: 4.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 900 EYERLKGCLSDSNKLSENLQKKVERLHAEQLALQEGISGRDSEIKQLRSELKDAIDENKTVREAKVGLENSlkavqenms 979
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEEL--------- 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 980 aqegqfKQKIADIKGSVDELQIKLKSLQEVRDHLESRNEELKRKLKDAQELQNMVDKERKLNSSLREDFDKL---EQTKL 1056
Cdd:PRK03918 244 ------EKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELreiEKRLS 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1057 DLEEQLRAKKVEIDRRSK---ELGEVTKDCENIRSDLEAqtndfLKERetlnltisdlrlhnEQLLETSKNYLSDITaan 1133
Cdd:PRK03918 318 RLEEEINGIEERIKELEEkeeRLEELKKKLKELEKRLEE-----LEER--------------HELYEEAKAKKEELE--- 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1134 nlnlEMKKNLHDLTKEckslrsDLQSKEEYFQTQKQLLDETISNLKEENRKMEEKLSSGNKALKE-DCEKLRSTLESKEL 1212
Cdd:PRK03918 376 ----RLKKRLTGLTPE------KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEElKKAKGKCPVCGREL 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1213 ILQQNKQELEERLTVINEKNGKNALLDAQLKSNETAFTSLRKAWIKQSLAIE----AANKRSLEME------QKVDKRTR 1282
Cdd:PRK03918 446 TEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKlkelAEQLKELEEKlkkynlEELEKKAE 525
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 665407636 1283 EYEELRSTLKTREINFRSEKERMDgTISSLLEDKRNLEEKLCTVTELLAKLKREL 1337
Cdd:PRK03918 526 EYEKLKEKLIKLKGEIKSLKKELE-KLEELKKKLAELEKKLDELEEELAELLKEL 579
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
586-925 |
6.37e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 54.07 E-value: 6.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 586 LTTEYERRIEQLEESLQRAQEELSILEKRKTDENKSLqleymakietsENENRSKFRAycldlKETQKRYEEQLQQTNEK 665
Cdd:pfam12128 598 SEEELRERLDKAEEALQSAREKQAAAEEQLVQANGEL-----------EKASREETFA-----RTALKNARLDLRRLFDE 661
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 666 LASVTTQCQVHLDVIKRSLQEKITQAEKERNELAVRHKAELEKIRETLKEKESSYKEKLRQAEEERDKEISRLEvmrnti 745
Cdd:pfam12128 662 KQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLK------ 735
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 746 AELHKTNSDREVELEgvkmekcQLKKLYDKSMLELeqlqctadqkssdllpGSSNENIDDLQKKCDQYVQDLELLRGEKA 825
Cdd:pfam12128 736 AAIAARRSGAKAELK-------ALETWYKRDLASL----------------GVDPDVIAKLKREIRTLERKIERIAVRRQ 792
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 826 ELLS-----------EIQKINGQHSNTIKKLEEIEAEMITLTTQKELERCEIAE-----------------KLETFKSKE 877
Cdd:pfam12128 793 EVLRyfdwyqetwlqRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMerkasekqqvrlsenlrGLRCEMSKL 872
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 665407636 878 ADIKEALHCAQLRLHAYDKLVCeyerLKGCLSDSNKLSENLQKKVERL 925
Cdd:pfam12128 873 ATLKEDANSEQAQGSIGERLAQ----LEDLKLKRDYLSESVKKYVEHF 916
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
768-1292 |
6.41e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 54.14 E-value: 6.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 768 QLKKLYDKsMLELEQLQCTADQKSS---DLLPGSSNenIDDLQKKCDQYVQDLELLRGEKAE-------LLSEIQKINGQ 837
Cdd:PRK01156 150 QRKKILDE-ILEINSLERNYDKLKDvidMLRAEISN--IDYLEEKLKSSNLELENIKKQIADdekshsiTLKEIERLSIE 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 838 HSNTIKKLEEIEAEMITLTTQKElERCEIAEKLETFKSKEADIKEALHCAQLRLHAYDKL-----------VCEYERLKG 906
Cdd:PRK01156 227 YNNAMDDYNNLKSALNELSSLED-MKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIindpvyknrnyINDYFKYKN 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 907 CLSDSNKLSENLQKKVERLHAEQLALQEGISGRDS---------EIKQLRSELKDAIDE-----------NKTVREAKVG 966
Cdd:PRK01156 306 DIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDyikkksrydDLNNQILELEGYEMDynsylksieslKKKIEEYSKN 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 967 LENSLKAVQENMSAQE---GQFKQKIADIKGSVDELQIKLKSLQEVRDHLESRNEELKRKLK---------------DAQ 1028
Cdd:PRK01156 386 IERMSAFISEILKIQEidpDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEmlngqsvcpvcgttlGEE 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1029 ELQNMVDKERKLNSSLREDFDKLEQTKLDLEEQLRAKKVEIDRRSKELGEVTKDCENIRSDLEAQTNDF------LKERE 1102
Cdd:PRK01156 466 KSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIkikineLKDKH 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1103 TL---------NLTISDLRLHNEQLLET-SKNYLSDITAANNLNLEMKKNLHDLTKECKSLRSDLQSKEEYFQTQKQLLD 1172
Cdd:PRK01156 546 DKyeeiknrykSLKLEDLDSKRTSWLNAlAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIE 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1173 ETISNLKEENRKMEEKlssgnkalKEDCEKLRSTLESkeliLQQNKQELEERLTVINEKNGKNALLDAQLKSNETAFTSL 1252
Cdd:PRK01156 626 NEANNLNNKYNEIQEN--------KILIEKLRGKIDN----YKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDA 693
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 665407636 1253 RKAWIKQSLAIEAANKRSLEMEQKVDKRTREYEELRSTLK 1292
Cdd:PRK01156 694 KANRARLESTIEILRTRINELSDRINDINETLESMKKIKK 733
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
842-1069 |
1.22e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 1.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 842 IKKLEEIEAEMITLTTQKE-LER-CEIAEKLETFKSKEADIKEALHCAQL--RLHAYDKLVCEYERLKGCLSDSNKLSEN 917
Cdd:COG4913 234 FDDLERAHEALEDAREQIElLEPiRELAERYAAARERLAELEYLRAALRLwfAQRRLELLEAELEELRAELARLEAELER 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 918 LQKKVERLHAEQLALQEGISGRD-SEIKQLRSELKDAIDENKTVREAKVGLENSLKAVQENMSAQEGQFKQKIADIKGSV 996
Cdd:COG4913 314 LEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALL 393
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 665407636 997 DELQIKLKSLQEVRDHLESRNEELKRKLKDAQ-ELQNMvdKERKLNSSLRedfdkLEQTKLDLEEQLRAKKVEI 1069
Cdd:COG4913 394 EALEEELEALEEALAEAEAALRDLRRELRELEaEIASL--ERRKSNIPAR-----LLALRDALAEALGLDEAEL 460
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
798-1029 |
1.31e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 1.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 798 SSNENIDDLQKKCDQYVQDLELLRGEKAELLSEIQKINGQHSNTIKKLEEIEAEMITLTTQ-KELERcEIAEKLETFKSK 876
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAElAELEK-EIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 877 EADIKEALHCAQlRLHAYDklvceyeRLKGCLSdsnklSENLQKKVERLHAEQlALQEGISGRDSEIKQLRSELKDAIDE 956
Cdd:COG4942 103 KEELAELLRALY-RLGRQP-------PLALLLS-----PEDFLDAVRRLQYLK-YLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 665407636 957 NKTVREAKVGLENSLKAVQENMSAQEGQFKQKIADIKGSVDELQIKLKSLQEVRDHLESRNEELKRKLKDAQE 1029
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
860-1337 |
1.44e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.12 E-value: 1.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 860 ELERCEIAEKLETFKSKEADIKEALHCAQLRLHAYDKLVCEYERLKGCLSDsnklsenLQKKVERLHAEQLALQEGISGR 939
Cdd:PRK02224 212 ESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIED-------LRETIAETEREREELAEEVRDL 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 940 DSEIKQLRSELKDAIDEnktvreakVGLEN----SLKAVQENMSAQEGQFKQKIADIKGSVDELQIKLKSLQEVRDHLES 1015
Cdd:PRK02224 285 RERLEELEEERDDLLAE--------AGLDDadaeAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEE 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1016 RNEELKRKlkdAQELQNMVDkerklnsSLREDFDKLEQTKLDLEEQLRAKKVEIDRRSKELGEVTKDCENIRSDLEAQTN 1095
Cdd:PRK02224 357 RAEELREE---AAELESELE-------EAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRE 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1096 DfLKERETLNLTISDLRLHNEQLLETSKnylsditaannlnlemkknlhdltkeCKSLRSDLQSKE-----EYFQTQKQL 1170
Cdd:PRK02224 427 R-EAELEATLRTARERVEEAEALLEAGK--------------------------CPECGQPVEGSPhvetiEEDRERVEE 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1171 LDETISNLKEENRKMEEKLSSGnKALKEDCEKLRSTLESKELIlqqnKQELEERLTVINEKNGKNALLDAQLKSNETAFT 1250
Cdd:PRK02224 480 LEAELEDLEEEVEEVEERLERA-EDLVEAEDRIERLEERREDL----EELIAERRETIEEKRERAEELRERAAELEAEAE 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1251 SLRKAWIKQSLAIEAANKRSLEMEQK---VDKRTREYEELRSTLKTREiNFRSEKERMDGTISSLLEDKRNLEEKLCTVT 1327
Cdd:PRK02224 555 EKREAAAEAEEEAEEAREEVAELNSKlaeLKERIESLERIRTLLAAIA-DAEDEIERLREKREALAELNDERRERLAEKR 633
|
490
....*....|
gi 665407636 1328 ELLAKLKREL 1337
Cdd:PRK02224 634 ERKRELEAEF 643
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
400-1229 |
1.51e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 53.13 E-value: 1.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 400 KINQEQNLVKEEDRMRDIIFQ---LKQEVDGKKNLIEEEKEVINNLRAQITSLNQ-----IETIKNQNAKTKILCEELqt 471
Cdd:TIGR01612 891 KFNDSKSLINEINKSIEEEYQninTLKKVDEYIKICENTKESIEKFHNKQNILKEilnknIDTIKESNLIEKSYKDKF-- 968
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 472 kDTVQTANKQESQEVLTlKTSLAHLKSKVCELQKKLEKQSED---EKISELQSDIGEISECCLSMELKLADIvnwqaeel 548
Cdd:TIGR01612 969 -DNTLIDKINELDKAFK-DASLNDYEAKNNELIKYFNDLKANlgkNKENMLYHQFDEKEKATNDIEQKIEDA-------- 1038
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 549 rpldQLQESGVELQHHSTTAEESLNVEKPIQEQTErTLTTEYERRIEQLEESLQRAQEELSILEKrkTDENKSLQLEYMA 628
Cdd:TIGR01612 1039 ----NKNIPNIEIAIHTSIYNIIDEIEKEIGKNIE-LLNKEILEEAEINITNFNEIKEKLKHYNF--DDFGKEENIKYAD 1111
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 629 KIETSENENRS---KFRAYCLDLKETQKR---YEEQLQQTNEKLASVTTQCQVHLDV--IKRSLQEKITQAEKERNELAV 700
Cdd:TIGR01612 1112 EINKIKDDIKNldqKIDHHIKALEEIKKKsenYIDEIKAQINDLEDVADKAISNDDPeeIEKKIENIVTKIDKKKNIYDE 1191
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 701 RHK-----AELEKIRETLKEKES---SYKEKL-----RQAEEERDKEISRLEVMRNTIAELHK-------------TNSD 754
Cdd:TIGR01612 1192 IKKllneiAEIEKDKTSLEEVKGinlSYGKNLgklflEKIDEEKKKSEHMIKAMEAYIEDLDEikekspeienemgIEMD 1271
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 755 REVELEGVKMEKCQLKKLYDKSMLELEQLQcTADQKSSDLLPGSSNE-NIDDLQKKCDQYVQDLELLRGEKAELLSEIQK 833
Cdd:TIGR01612 1272 IKAEMETFNISHDDDKDHHIISKKHDENIS-DIREKSLKIIEDFSEEsDINDIKKELQKNLLDAQKHNSDINLYLNEIAN 1350
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 834 I-NGQHSNTIKKL-EEI-----EAEMITLTTQKELERCEIAEK-------LETFKSK---EADIKEALHCAQLRLHAYDK 896
Cdd:TIGR01612 1351 IyNILKLNKIKKIiDEVkeytkEIEENNKNIKDELDKSEKLIKkikddinLEECKSKiesTLDDKDIDECIKKIKELKNH 1430
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 897 LVCEYERLKGCLSDSNKLSENLQ---KKVERL-----HAEQLALQEGISGRDSEIkqlrSELKDAIDENKtvrEAKVGLE 968
Cdd:TIGR01612 1431 ILSEESNIDTYFKNADENNENVLllfKNIEMAdnksqHILKIKKDNATNDHDFNI----NELKEHIDKSK---GCKDEAD 1503
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 969 NSLKAVQENMSAQEgQFKQKIADIKGSVDELQIKLKSLQEVRDhlesrNEELKRKLKDAQElQNMVDKERKlnsslREDF 1048
Cdd:TIGR01612 1504 KNAKAIEKNKELFE-QYKKDVTELLNKYSALAIKNKFAKTKKD-----SEIIIKEIKDAHK-KFILEAEKS-----EQKI 1571
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1049 DKLEQTKLDLEEQLRAKkveiDRRSKELGEVTKDCENIR------SDLEAQTNDFLKERETLNLTISDLRLHNE--QLLE 1120
Cdd:TIGR01612 1572 KEIKKEKFRIEDDAAKN----DKSNKAAIDIQLSLENFEnkflkiSDIKKKINDCLKETESIEKKISSFSIDSQdtELKE 1647
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1121 TSKNYLSDITAANNLNlEMKKNLHDLTKECKSLRSDLQS-KEEYFQTQKQLLDETISNLKEENRKMEEKLSSGNKALKED 1199
Cdd:TIGR01612 1648 NGDNLNSLQEFLESLK-DQKKNIEDKKKELDELDSEIEKiEIDVDQHKKNYEIGIIEKIKEIAIANKEEIESIKELIEPT 1726
|
890 900 910
....*....|....*....|....*....|
gi 665407636 1200 CEKLRSTLESKELILQQNKQELEERLTVIN 1229
Cdd:TIGR01612 1727 IENLISSFNTNDLEGIDPNEKLEEYNTEIG 1756
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
507-750 |
2.01e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 2.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 507 LEKQSEDEKISELQSDIGEISEcclsMELKLADIvnwqAEELRPLDQLQESGVELQHHSTTAEESLNVEKPIQEQTERTL 586
Cdd:COG4913 218 LEEPDTFEAADALVEHFDDLER----AHEALEDA----REQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRR 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 587 TTEYERRIEQLEESLQRAQEELSILEKRKTDENKSLQlEYMAKIETSENENRSkfrayclDLKETQKRYEEQLQQTNEKL 666
Cdd:COG4913 290 LELLEAELEELRAELARLEAELERLEARLDALREELD-ELEAQIRGNGGDRLE-------QLEREIERLERELEERERRR 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 667 ASVTTQCqvhldvikRSLQEKITQAEKERNEL---AVRHKAELEKIRETLKEKESSYKEKLRQAEEERD---KEISRLEV 740
Cdd:COG4913 362 ARLEALL--------AALGLPLPASAEEFAALraeAAALLEALEEELEALEEALAEAEAALRDLRRELReleAEIASLER 433
|
250
....*....|.
gi 665407636 741 MRNTI-AELHK 750
Cdd:COG4913 434 RKSNIpARLLA 444
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
691-1188 |
2.26e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.35 E-value: 2.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 691 AEKERNELAVRhKAELEKIRETLKEKESSYKEKLRQAEEERDKEISRLEVMRNTIAELhktnSDREVELEGVKMEKCQLK 770
Cdd:PRK02224 197 EEKEEKDLHER-LNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREEL----ETLEAEIEDLRETIAETE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 771 KLYDKSMLELEQLQCTADQKSSDLLPGSSNENIDDL-QKKCDQYVQDLELLRGEKAELLSEIQKINGQHSNTIKKLEEIE 849
Cdd:PRK02224 272 REREELAEEVRDLRERLEELEEERDDLLAEAGLDDAdAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDA 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 850 AEMITLTTQKELERCEIAEKLETFKSKEADIKEALhcaqlrlhayDKLVCEYERLKGCLSDSNKLSENLQKKVERLHAEQ 929
Cdd:PRK02224 352 DDLEERAEELREEAAELESELEEAREAVEDRREEI----------EELEEEIEELRERFGDAPVDLGNAEDFLEELREER 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 930 lalqEGISGRDSEIKQLRSELKDAIDENKTVREA------KVGLENSLKA-VQENMSAQEGQFKQKIADIKGSVDELQIK 1002
Cdd:PRK02224 422 ----DELREREAELEATLRTARERVEEAEALLEAgkcpecGQPVEGSPHVeTIEEDRERVEELEAELEDLEEEVEEVEER 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1003 LKSLQEVRDhLESRNEELKRKLKDAQEL----QNMVDKERKLNSSLREDFDKLEQTKLDLEEQLRAKKVEIDRRSKELGE 1078
Cdd:PRK02224 498 LERAEDLVE-AEDRIERLEERREDLEELiaerRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAE 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1079 VTKDCENIRSDLEAQTN--DFLKERETLNLTISDLRLHNEQLLEtsknylsditaannLNLEMKKNLHDLTKECKSLRSD 1156
Cdd:PRK02224 577 LNSKLAELKERIESLERirTLLAAIADAEDEIERLREKREALAE--------------LNDERRERLAEKRERKRELEAE 642
|
490 500 510
....*....|....*....|....*....|...
gi 665407636 1157 LQ-SKEEYFQTQKQLLDETISNLKEENRKMEEK 1188
Cdd:PRK02224 643 FDeARIEEAREDKERAEEYLEQVEEKLDELREE 675
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
813-1343 |
4.21e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 4.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 813 YVQDLELLRGEKAELLSEIQKINGQHSNTIKKLEEIEAEMitltTQKELERCEIAEKLETFKSKEADIKEALHCAQLRLH 892
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKL----EELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 893 AYDKlvcEYERLKGCLSDSNKLSENLQKKVERLHAEQLALQEgisgrdsEIKQLRSELKDAIDENKTVREAKVGLENSLK 972
Cdd:TIGR02168 306 ILRE---RLANLERQLEELEAQLEELESKLDELAEELAELEE-------KLEELKEELESLEAELEELEAELEELESRLE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 973 AVQENMSAQEG---QFKQKIADIKGSVDELQIKLKSLQEVRDHLESRNEELKRKLKDAQ--ELQNMVDKERKLNSSLRED 1047
Cdd:TIGR02168 376 ELEEQLETLRSkvaQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElkELQAELEELEEELEELQEE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1048 FDKLEQTKLDLEEQLRAKKVEIDRRSKELGEVTKDCENIRSDLEAQTNDFLKERETLN--LTISDLRLHNEQLLETSKNY 1125
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKnqSGLSGILGVLSELISVDEGY 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1126 LSDITAANNLNLEMkknlhdltkeckSLRSDLQSKEEYFQTQKQ---------LLDETISNLKEENRKMEEKLSSGNKAL 1196
Cdd:TIGR02168 536 EAAIEAALGGRLQA------------VVVENLNAAKKAIAFLKQnelgrvtflPLDSIKGTEIQGNDREILKNIEGFLGV 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1197 KEDCEKLRSTL---------------------------------------------------ESKELILQQNKQELEERL 1225
Cdd:TIGR02168 604 AKDLVKFDPKLrkalsyllggvlvvddldnalelakklrpgyrivtldgdlvrpggvitggsAKTNSSILERRREIEELE 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1226 TVINEKNGKNALLDAQLKSNETAFT-------SLRKAWIKQSLAIEAANKRSLEMEQKVDKRTREYEELRSTLKTREINF 1298
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEeleeeleQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 665407636 1299 RSEKERMDGTISSLLEDKRN---LEEKLCTVTELLAKLKRELPALHTQ 1343
Cdd:TIGR02168 764 EELEERLEEAEEELAEAEAEieeLEAQIEQLKEELKALREALDELRAE 811
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
434-1077 |
4.52e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.51 E-value: 4.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 434 EEKEVINNLRAQITSLNQIETIKNQNAKTKILCEELQTKDTVQtANKQESQEVLTLKTSLAHLKSK-------------- 499
Cdd:TIGR00618 193 HGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREAL-QQTQQSHAYLTQKREAQEEQLKkqqllkqlrariee 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 500 -------VCELQKKLEKQSEDEKISELQSDIGEISECCLSMELKLADIVNWQAEELRPLDQLQESGVELQHHSTTAEESL 572
Cdd:TIGR00618 272 lraqeavLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLH 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 573 NVEKPIQEQTERTLT--TEYERRIEQLEESLQRAQEELSILEKRKTDENKSLQLEYMAKIETSENENRSKFRAYCLDLK- 649
Cdd:TIGR00618 352 SQEIHIRDAHEVATSirEISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKk 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 650 --ETQKRYEEQLQQTNEKLASVTTQCQVHLDVIKRSLQEKITQAEKERN--ELAVRHKAELEKIRETLKEKESSYKEKLR 725
Cdd:TIGR00618 432 qqELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQihLQETRKKAVVLARLLELQEEPCPLCGSCI 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 726 QAEEER------DKEISRLEVMRNTIAELHKTNSDREVELEGvkmEKCQLKKLYDKSMLELEQLQCTA--DQKSSDLLPG 797
Cdd:TIGR00618 512 HPNPARqdidnpGPLTRRMQRGEQTYAQLETSEEDVYHQLTS---ERKQRASLKEQMQEIQQSFSILTqcDNRSKEDIPN 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 798 SSNEnIDDLQKKCDQYVQDLELLRGEKAELLSEIQ-KINGQhsNTIKKLEEIEAEMITLTTQKELERCEIAEKLETFKSK 876
Cdd:TIGR00618 589 LQNI-TVRLQDLTEKLSEAEDMLACEQHALLRKLQpEQDLQ--DVRLHLQQCSQELALKLTALHALQLTLTQERVREHAL 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 877 EADIKEALHCAQlRLHAYDKLVCEYERLKGCLSDSNKLSENLQ----------KKVERLHAEQLALQEGISGRDSEIKQL 946
Cdd:TIGR00618 666 SIRVLPKELLAS-RQLALQKMQSEKEQLTYWKEMLAQCQTLLRelethieeydREFNEIENASSSLGSDLAAREDALNQS 744
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 947 RSELKDAIDENKTVREAKVGLENSLKAVQENMSAQEGQFKQKIADIKGSVDELQIKLKSL-----QEVRDHLESRNEELK 1021
Cdd:TIGR00618 745 LKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLeaeigQEIPSDEDILNLQCE 824
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 665407636 1022 RKLKDAQELQNMVDKERKLNSSLREDFDKLEQTKLDLeEQLRAKKVEIDRRSKELG 1077
Cdd:TIGR00618 825 TLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQL-AQLTQEQAKIIQLSDKLN 879
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
507-776 |
5.68e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 50.70 E-value: 5.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 507 LEKQSEDEKISELQSDIGEISECcLSmelKLADIVNWQAEELRPLDQLQESGVE-LQHHSttAEESLNVEKPIQEQTERT 585
Cdd:PRK05771 36 LKEELSNERLRKLRSLLTKLSEA-LD---KLRSYLPKLNPLREEKKKVSVKSLEeLIKDV--EEELEKIEKEIKELEEEI 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 586 ltTEYERRIEQLEESLQRAQ------EELSILEKRKT--------DENKSLQLEYMAKIETSENENRSKFRAYCL--DLK 649
Cdd:PRK05771 110 --SELENEIKELEQEIERLEpwgnfdLDLSLLLGFKYvsvfvgtvPEDKLEELKLESDVENVEYISTDKGYVYVVvvVLK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 650 ETQKRYEEQLQQTNEKLASVTTqcqvhldviKRSLQEKITQAEKERNELavrhKAELEKIRETLKEKESSYKEKLRQAEE 729
Cdd:PRK05771 188 ELSDEVEEELKKLGFERLELEE---------EGTPSELIREIKEELEEI----EKERESLLEELKELAKKYLEELLALYE 254
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 665407636 730 ERDKEISRLEVMRNTiaelhkTNSDREVELEG---VKMEKcQLKKLYDKS 776
Cdd:PRK05771 255 YLEIELERAEALSKF------LKTDKTFAIEGwvpEDRVK-KLKELIDKA 297
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1007-1257 |
7.40e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 7.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1007 QEVRDHLESRNEELKRKLKDAQELQNMVDKERKlnsSLREDFDKLEQTKLDLEEQLRAKKVEIDRRSKELGEVTKDCENI 1086
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEK---ALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1087 RSDLEAQTNDFlkeRETLNLTISDLRLHNEQLLETSKNYLSDITAANNLNlEMKKNLHDLTKECKSLRSDLQSKEEYFQT 1166
Cdd:COG4942 96 RAELEAQKEEL---AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLK-YLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1167 QKQLLDETISNLKEENRKMEEKLSSGNKALKEDcEKLRSTLESKELILQQNKQELEERLTVINEkngknALLDAQLKSNE 1246
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARL-EKELAELAAELAELQQEAEELEALIARLEA-----EAAAAAERTPA 245
|
250
....*....|.
gi 665407636 1247 TAFTSLRKAWI 1257
Cdd:COG4942 246 AGFAALKGKLP 256
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
122-1097 |
8.63e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 50.82 E-value: 8.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 122 FSHASCEVSQKTTDCKRLSEQISTAHDDFGQLQEKYNNLKHKWS------SQKLAIDTMQVDynTIQQKYLQLQDEYRHL 195
Cdd:TIGR01612 746 HGEINKDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISeiknhyNDQINIDNIKDE--DAKQNYDKSKEYIKTI 823
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 196 ELRsdeqcqqlQDENSKLQAEIGTLKERVEEIHSELLEVPNpdTHPEDMELQNQELKKRLSKLQWEFDEIQLN-YE---- 270
Cdd:TIGR01612 824 SIK--------EDEIFKIINEMKFMKDDFLNKVDKFINFEN--NCKEKIDSEHEQFAELTNKIKAEISDDKLNdYEkkfn 893
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 271 ---CLSNELMSTIQE-----------------CDALREE----HKQRTT-----NSDLESMKSSGVGTECSdpENELDTD 321
Cdd:TIGR01612 894 dskSLINEINKSIEEeyqnintlkkvdeyikiCENTKESiekfHNKQNIlkeilNKNIDTIKESNLIEKSY--KDKFDNT 971
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 322 LLQQFTKLSKSIQQIELTDYSGgrrlfiyNHAEQDQSVPSLKLCLEPAK----YLEGDGKQHDASDSVFlkgflkcqrfQ 397
Cdd:TIGR01612 972 LIDKINELDKAFKDASLNDYEA-------KNNELIKYFNDLKANLGKNKenmlYHQFDEKEKATNDIEQ----------K 1034
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 398 IVKINQeqNLVKEEDRMRDIIFQLKQEVDGK--KNLIEEEKEVINNLRAQITSLNQI-ETIKNQN-------AKTKILCE 467
Cdd:TIGR01612 1035 IEDANK--NIPNIEIAIHTSIYNIIDEIEKEigKNIELLNKEILEEAEINITNFNEIkEKLKHYNfddfgkeENIKYADE 1112
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 468 ELQTKDTVQTANKQESQEVLTL-------KTSLAHLKSKVCELQKKLEKQSEDEKISELQSDIGEISECcLSMELKLADI 540
Cdd:TIGR01612 1113 INKIKDDIKNLDQKIDHHIKALeeikkksENYIDEIKAQINDLEDVADKAISNDDPEEIEKKIENIVTK-IDKKKNIYDE 1191
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 541 VNWQAEELRPLDQLQESGVELQHHSTTAEESLNveKPIQEQTErtlttEYERRIEQLEESLQRAQEELSILEKRKTDENK 620
Cdd:TIGR01612 1192 IKKLLNEIAEIEKDKTSLEEVKGINLSYGKNLG--KLFLEKID-----EEKKKSEHMIKAMEAYIEDLDEIKEKSPEIEN 1264
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 621 SLQLEYMAKIETSE-NENRSKFRAYCLdlkeTQKRYEEQLQQTNEKLASVTTQCQVHLDV--IKRSLQEKITQAEKERNE 697
Cdd:TIGR01612 1265 EMGIEMDIKAEMETfNISHDDDKDHHI----ISKKHDENISDIREKSLKIIEDFSEESDIndIKKELQKNLLDAQKHNSD 1340
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 698 LAvRHKAELEKIRETLK--------EKESSYKEKLRQAEEERDKEISRLEVMRNTIAE---LHKTNSDREVELEGVKMEK 766
Cdd:TIGR01612 1341 IN-LYLNEIANIYNILKlnkikkiiDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDdinLEECKSKIESTLDDKDIDE 1419
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 767 CqlkklydksmleleqLQCTADQKSSDLlpgSSNENIDDLQKKCDQYVQDLELL------RGEKAELLSEIQKING--QH 838
Cdd:TIGR01612 1420 C---------------IKKIKELKNHIL---SEESNIDTYFKNADENNENVLLLfkniemADNKSQHILKIKKDNAtnDH 1481
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 839 SNTIKKLEEIEAEMITLTTQKELERCEIAEKLETFKSKEADIKEALHcaqlrlhAYDKLvceyeRLKGCLSDSNKLSENL 918
Cdd:TIGR01612 1482 DFNINELKEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLN-------KYSAL-----AIKNKFAKTKKDSEII 1549
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 919 QKKVERLHaEQLALQEGISGRD-SEIKQLRSELKDAIDENKTVREAKVGLENSLKAVqENMSAQEGQFKQKIADIKGSVD 997
Cdd:TIGR01612 1550 IKEIKDAH-KKFILEAEKSEQKiKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLENF-ENKFLKISDIKKKINDCLKETE 1627
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 998 ELQIKLKSLQevrdhLESRNEELKRKLKDAQELQNMVdkerklnsslredfdkleqtkldleEQLRAKKVEIDRRSKELG 1077
Cdd:TIGR01612 1628 SIEKKISSFS-----IDSQDTELKENGDNLNSLQEFL-------------------------ESLKDQKKNIEDKKKELD 1677
|
1050 1060
....*....|....*....|
gi 665407636 1078 EVTKDCENIRSDLEAQTNDF 1097
Cdd:TIGR01612 1678 ELDSEIEKIEIDVDQHKKNY 1697
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
676-1322 |
1.21e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.97 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 676 HLDVIKRSLQEKITQAEKERNELAvRHKAELEKIRETLKEKESSYKEKLRQAEEERDKEISRLEVMRNTIAELHKTNSDR 755
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELI-IDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 756 EVELEGVKMEKCQLKKLYDKSMLELEQL---QCTADQKSSDLLPGSSNENIDDLQKKCDQYVQDLELLRGEKAELLSEIQ 832
Cdd:pfam02463 245 LLRDEQEEIESSKQEIEKEEEKLAQVLKenkEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 833 KINGQHSNTIKKLEEIEAEMITLTTQKELERCEIAEkletfkskeadikealhCAQLRLHAydklvceyERLKGCLSDSN 912
Cdd:pfam02463 325 KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEE-----------------LEKLQEKL--------EQLEEELLAKK 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 913 KLSENLQKKVERLHAEQLALQEGISGRDSEIKQLRSELKDAIDENKTVREAKVGLENSLKAVQENMSAQEGQFKQKIADI 992
Cdd:pfam02463 380 KLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELK 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 993 KGS-VDELQIKLKSLQEVRDHLESRNEELKRKLKDAQELQNMVDKERKLNSSLREDFDKLEQTKLDLEEQLRAKKVEIDR 1071
Cdd:pfam02463 460 LLKdELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVE 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1072 RSKELGEVTKDCENIRSDLEAQTNDFLKERETLNLTISDLRLHNEQLLETSKNYLSDITAANNLNLEMKKNLHDLTKECK 1151
Cdd:pfam02463 540 NYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDD 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1152 SLRSDLQSKEEYFQTQKQLLDETISNLKEENRKMEEKLSSGNKALKEDCEKLRSTLESKELILQQNKQELEERLTVINEK 1231
Cdd:pfam02463 620 KRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQL 699
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1232 NGKNALLDAQLKSNETAFTSLRKAWIKQSLAIEAANKRSLEMEQKVDKRTREYEELRSTLKTREINFRSEKERMDGTISS 1311
Cdd:pfam02463 700 EIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEE 779
|
650
....*....|.
gi 665407636 1312 LLEDKRNLEEK 1322
Cdd:pfam02463 780 REKTEKLKVEE 790
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
546-1246 |
1.24e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.97 E-value: 1.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 546 EELRPLDQLQESGVELQHHSTTAEESLNVEK----------PIQEQTERTLTTEYERRIEQLEESLQRAQEELSILEKRK 615
Cdd:TIGR00618 170 MNLFPLDQYTQLALMEFAKKKSLHGKAELLTlrsqlltlctPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKR 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 616 TDENKSLQLEYMAKIETSENEnrsKFRAYCLDLKETQKRYEEQLQQTNEKL-ASVTTQCQVHLDVIKRSLQEKITQAEKE 694
Cdd:TIGR00618 250 EAQEEQLKKQQLLKQLRARIE---ELRAQEAVLEETQERINRARKAAPLAAhIKAVTQIEQQAQRIHTELQSKMRSRAKL 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 695 RnelavRHKAELEKIRETLKEKESSYKEKLRQAEEERDKeisrlevmrNTIAELHKTNSDREVELEGVKMEKCQLKKLYD 774
Cdd:TIGR00618 327 L-----MKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDA---------HEVATSIREISCQQHTLTQHIHTLQQQKTTLT 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 775 KSMLELEQLQCTADQKSSDLLPGSSNENIDDLQKKCDQYVQDLELLRGEKAELLSEIQKingqhsnTIKKLEEIEAEMIT 854
Cdd:TIGR00618 393 QKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTA-------QCEKLEKIHLQESA 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 855 lttQKELERCEIAEKLETFKSKEADIKEALHCAQLRLHAYDKLVCEYERLKGCLSDSNKLSENLQKKVERLHAEQLALQE 934
Cdd:TIGR00618 466 ---QSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLET 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 935 GISGRDSEIKQLRSELKdaIDENKtvreakvglENSLKAVQENMSAQEGQFKQKIADIKGSVDELQIKLKSLQEVRDHLE 1014
Cdd:TIGR00618 543 SEEDVYHQLTSERKQRA--SLKEQ---------MQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLA 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1015 SRNEELKRKLKDAQELQNMVDKERKLNSSLREDFDKLEQTKLDL-----EEQLRAKKVE----IDRRSKELGEVTKDCEN 1085
Cdd:TIGR00618 612 CEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLtqervREHALSIRVLpkelLASRQLALQKMQSEKEQ 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1086 IRSDLE--AQTNDFLKERETlnlTISDLRLHNEQLLETSKNYLSDITAANNLNLEMKKNLHDLTKE-CKSLRSDLQSKEE 1162
Cdd:TIGR00618 692 LTYWKEmlAQCQTLLRELET---HIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTvLKARTEAHFNNNE 768
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1163 YFQTQKQLLDE---TISNLKEENRKMEEKLSSGNKALKEDCEKLRSTLESKELILQQNKQELEERLTVINEKNGKNALLD 1239
Cdd:TIGR00618 769 EVTAALQTGAElshLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEIT 848
|
....*..
gi 665407636 1240 AQLKSNE 1246
Cdd:TIGR00618 849 HQLLKYE 855
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
401-1297 |
1.36e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.05 E-value: 1.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 401 INQEQNLVKEEDRMRDIIFQLKQEV---DGKKNLIEEEKEVINNLRAQITSLNQIET-----IKNQNAKTKILCEELQTK 472
Cdd:TIGR00606 178 IFSATRYIKALETLRQVRQTQGQKVqehQMELKYLKQYKEKACEIRDQITSKEAQLEssreiVKSYENELDPLKNRLKEI 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 473 DTVQTANKQESQEVLTLKTSLAHLKSKVCELQKKLEK--QSEDEKISELQSDIGEISEcclSMELKLADIvnwqaeeLRP 550
Cdd:TIGR00606 258 EHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKvfQGTDEQLNDLYHNHQRTVR---EKERELVDC-------QRE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 551 LDQLQESGVELQHHSTtaeESLNVEKPIQEQTERTLTTEYERRIEQLEESLQraqEELSILEkRKTDENKSLQLEYMAKI 630
Cdd:TIGR00606 328 LEKLNKERRLLNQEKT---ELLVEQGRLQLQADRHQEHIRARDSLIQSLATR---LELDGFE-RGPFSERQIKNFHTLVI 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 631 ETSENENRSKFRAyCLDLKETQKRYEEQLqqtneklasvtTQCQVHLDVIKRSLQEKITQAEKERNELAVRHK--AELEK 708
Cdd:TIGR00606 401 ERQEDEAKTAAQL-CADLQSKERLKQEQA-----------DEIRDEKKGLGRTIELKKEILEKKQEELKFVIKelQQLEG 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 709 IRETLKEKESSYKEKLRQAEEERDKEISRLEVMRNTIAELHKTNSDREVELEGVKMEKCQLKKLYDKSMLELEQLQCTAD 788
Cdd:TIGR00606 469 SSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKD 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 789 QKSSDLLPGSSNE---------NIDDLQKKCDQYVQDLELLRGEKAELLSEIQKINGQHSNTIKKLEEIEAEMITLTtQK 859
Cdd:TIGR00606 549 EQIRKIKSRHSDEltsllgyfpNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYE-DK 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 860 ELERCeiaeKLETFKSKEADIKEALHCAQLRLHAYDKLVCEYERLKGCLSDSNKLSENLQKKVERLHAEqlaLQEgisgr 939
Cdd:TIGR00606 628 LFDVC----GSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAE---LQE----- 695
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 940 dsEIKQLRSELKDAIDEnktvreakvglensLKAVQENMSAQEGQFKQKIADIKGSVDELQIKLKSLQEVRDHLESRNEE 1019
Cdd:TIGR00606 696 --FISDLQSKLRLAPDK--------------LKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRD 759
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1020 LKR-----------------KLKDAQELQNMVDKERKLNSSLREDFDKLEQTKLDLE--------EQLRAKKVEIDRR-- 1072
Cdd:TIGR00606 760 IQRlkndieeqetllgtimpEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQgsdldrtvQQVNQEKQEKQHEld 839
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1073 -----SKELGEVTKDCENIRSDLEAQTNDFLKERETLNLTISDLRLHNEQLLETSKNYLSditaannLNLEMKKNLHDLT 1147
Cdd:TIGR00606 840 tvvskIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQS-------LIREIKDAKEQDS 912
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1148 KECKSLRSDLQSKEEYF---QTQKQLLDETISNLKEENRKMEEKLSSGNKALKEDCEKLRSTLESKELILQQNKQELEER 1224
Cdd:TIGR00606 913 PLETFLEKDQQEKEELIsskETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKH 992
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 665407636 1225 LTVINEkngknallDAQLKSNETAFTSLRKAWIKQSLAIEAANKRSLEMEQKVDKRTREYEELRSTLKTREIN 1297
Cdd:TIGR00606 993 QEKINE--------DMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQ 1057
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
591-1066 |
1.97e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 49.13 E-value: 1.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 591 ERRIEQLEESLQRAQEELSILEKrKTDENKSLQLEYMAKIETSENENRSKFRAYCldlketqkRYEEQLQQTNEKLASVT 670
Cdd:PRK01156 248 EDMKNRYESEIKTAESDLSMELE-KNNYYKELEERHMKIINDPVYKNRNYINDYF--------KYKNDIENKKQILSNID 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 671 TQCQVHLDVIKrslqeKITQAEKERNELAV--RHKAELEKIRETLKEKESSYKEKLRQAEEERDKEISRLEVMRNTIAEL 748
Cdd:PRK01156 319 AEINKYHAIIK-----KLSVLQKDYNDYIKkkSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFI 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 749 HKTNSDREVELEGVKMEKCQLKKLYDKSMLELEQLQCTADQKSSDLLPGSSNENIDDLQKKC----------------DQ 812
Cdd:PRK01156 394 SEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCpvcgttlgeeksnhiiNH 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 813 YVQDLELLRGEKAELLSEIQKINGQHSNTIKKLEEIEAEMITLTTQKELERCEIAEKLETFKSKEADIKEALHCAQLRLH 892
Cdd:PRK01156 474 YNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKN 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 893 AYDKLVCE------YERLKGCLSDSNKLSENLQKKVERLHAEQLALQEGISGRDSEIKQLRSELKDAI---DENKTVREA 963
Cdd:PRK01156 554 RYKSLKLEdldskrTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIreiENEANNLNN 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 964 KVGLENSLKAVQENMSAQEGQFKQKIADIKGSVDELQIKLKSLQEVRDHLESRNEELKRKLKDAQELQNMVDkerklnsS 1043
Cdd:PRK01156 634 KYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIE-------I 706
|
490 500
....*....|....*....|...
gi 665407636 1044 LREDFDKLEQTKLDLEEQLRAKK 1066
Cdd:PRK01156 707 LRTRINELSDRINDINETLESMK 729
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
687-1244 |
2.13e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.25 E-value: 2.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 687 KITQAEKERNELAVRHKAELEKIRETLKEKessyKEKLRQAEEERDKEISRLEVMRNTIAELHKTNSDREVELEGVKMEK 766
Cdd:TIGR04523 107 KINSEIKNDKEQKNKLEVELNKLEKQKKEN----KKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEK 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 767 CQLKKLYDKSMLELEQLQCT-ADQKSSDLLPGSSNENIDDLQKKCDQYVQDLELLRGEKAELLSEIQKINGQHSNTIKKL 845
Cdd:TIGR04523 183 LNIQKNIDKIKNKLLKLELLlSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQ 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 846 EEIEAEMITLTTQKELERCEIAEKLETFKSKEADIKEALHCAQLRLHAY-----DKLVCEYERLKGCLSDSNKLSENLQK 920
Cdd:TIGR04523 263 NKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKElkselKNQEKKLEEIQNQISQNNKIISQLNE 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 921 KVERLHAEQLALQEGISGRDSEIKQLRSELKDAIDENKTVREAKVGLENSLKAVQENMSAQEGQFKQKIADIKGSVDELQ 1000
Cdd:TIGR04523 343 QISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKE 422
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1001 IKLKSLQEVRDHLESRNEELKRKLKDAQELQNMVDKERKLNSSLREDFDKLEQTKLDLEEQLRAKKVEIDRRSKELGEVT 1080
Cdd:TIGR04523 423 LLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLN 502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1081 KDceniRSDLEAQTNDFLKERETLNLTISDLrlhneqlletsknylsditaaNNLNLEMKKNLHDLTKECKSLRSDLqsK 1160
Cdd:TIGR04523 503 EE----KKELEEKVKDLTKKISSLKEKIEKL---------------------ESEKKEKESKISDLEDELNKDDFEL--K 555
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1161 EEYFQTQKQLLDETISNLKEENRKMEEKLSSGNKALKEDcEKLRSTLESKELILQQNKQELEERLTVINEKNGKNALLDA 1240
Cdd:TIGR04523 556 KENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQK-EKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIK 634
|
....
gi 665407636 1241 QLKS 1244
Cdd:TIGR04523 635 NIKS 638
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
823-1344 |
2.84e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 2.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 823 EKAELLSEIQKINGQHSNTIKKLEEIEAEMItlttQKELERCEIAEKLETFKSKEADIKEALHCAQLRLhayDKLVCEYE 902
Cdd:TIGR04523 34 EEKQLEKKLKTIKNELKNKEKELKNLDKNLN----KDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKI---NKLNSDLS 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 903 RLKGCLSDSNKLSENLQKKVERLHAEQLALQEGISGRDSEIKQLRSELKDAIDENKTVREAKVGLENSLKAVQENMSAQE 982
Cdd:TIGR04523 107 KINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQ 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 983 gqfkQKIADIKGSVDELQIKLKSLQ---EVRDHLESRNEELKRKL----KDAQELQNMVDKERKLNSSLREDFDKLEQTK 1055
Cdd:TIGR04523 187 ----KNIDKIKNKLLKLELLLSNLKkkiQKNKSLESQISELKKQNnqlkDNIEKKQQEINEKTTEISNTQTQLNQLKDEQ 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1056 LDLEEQLRAKKVEIDRRSKELGEVTKDCENIRSDLEAQTNDflKERETLNLTISDLRLHNEQLLETSknylSDITAANNL 1135
Cdd:TIGR04523 263 NKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQ--KEQDWNKELKSELKNQEKKLEEIQ----NQISQNNKI 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1136 NLEMKKNLHDLTKECKSLRSDLQSKEEYFQtQKQLLDETISNLKEENRKMEEKLSSGNKALK---EDCEKLRSTLESKEL 1212
Cdd:TIGR04523 337 ISQLNEQISQLKKELTNSESENSEKQRELE-EKQNEIEKLKKENQSYKQEIKNLESQINDLEskiQNQEKLNQQKDEQIK 415
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1213 ILQQNKQELEERLTVINEKNGKNALLDAQLKSNETAFtslrkawikqSLAIEAANKRSLEMEQKVDKRTREYEELRSTLK 1292
Cdd:TIGR04523 416 KLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVK----------ELIIKNLDNTRESLETQLKVLSRSINKIKQNLE 485
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 665407636 1293 TREINFRSEKERmdgtISSLLEDKRNLEEKLCTVTELLAKLKRELPALHTQK 1344
Cdd:TIGR04523 486 QKQKELKSKEKE----LKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEK 533
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
940-1104 |
3.02e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.90 E-value: 3.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 940 DSEIKQLRSELKDAIDENKTVREAKVGLENSLKAVQENMSAQEgqfkQKIADIKGSVDELQIKLKSLQEvrdHLESRNEE 1019
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQ----AELEALQAEIDKLQAEIAEAEA---EIEERREE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1020 LKRKLKDAQE--------------------------LQNMVDKERKLNSSLREDFDKLEQTKLDLEEQ---LRAKKVEID 1070
Cdd:COG3883 88 LGERARALYRsggsvsyldvllgsesfsdfldrlsaLSKIADADADLLEELKADKAELEAKKAELEAKlaeLEALKAELE 167
|
170 180 190
....*....|....*....|....*....|....
gi 665407636 1071 RRSKELGEVTKDCENIRSDLEAQTNDFLKERETL 1104
Cdd:COG3883 168 AAKAELEAQQAEQEALLAQLSAEEAAAEAQLAEL 201
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
579-793 |
3.50e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 3.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 579 QEQTERTLTTEYERRIEQLEESLQRAQEELSILEKRKTD---ENKSLQLEYMAKIETSE-NENRSKFRAYCLDLKETQKR 654
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEfrqKNGLVDLSEEAKLLLQQlSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 655 Y---EEQLQQTNEKLASVTTqcqvhlDVIKRSLQEKITQAEKERNELAVRHKAE-------LEKIRETLKEKESSYKEKL 724
Cdd:COG3206 242 LaalRAQLGSGPDALPELLQ------SPVIQQLRAQLAELEAELAELSARYTPNhpdvialRAQIAALRAQLQQEAQRIL 315
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 665407636 725 RQAEEERDKEISRLEVMRNTIAELH---KTNSDREVELEGVKMEKCQLKKLYDKSMLELEQLQCTADQKSSD 793
Cdd:COG3206 316 ASLEAELEALQAREASLQAQLAQLEarlAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALTVGN 387
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
682-1334 |
4.13e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.09 E-value: 4.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 682 RSLQEKITQAEKERNELAVRHKAELEKIR------ETLKEKESSYKEKLRQAEEERDKEISRLEVMRNTIAELHKTNSDR 755
Cdd:TIGR04523 43 KTIKNELKNKEKELKNLDKNLNKDEEKINnsnnkiKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKL 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 756 EVELEGVKMEKCQLKKLYDKSMLELEQLQCTADqkssdllpgSSNENIDDLQKKCDQYVQDLELLRGEKAELLSEIQKIN 835
Cdd:TIGR04523 123 EVELNKLEKQKKENKKNIDKFLTEIKKKEKELE---------KLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIK 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 836 GQHSNTIKKLEEIEAemitlttqKELERCEIAEKLETFKSKEADIKEALHCAQLRLhayDKLVCEYERLKGCLSDSNKLS 915
Cdd:TIGR04523 194 NKLLKLELLLSNLKK--------KIQKNKSLESQISELKKQNNQLKDNIEKKQQEI---NEKTTEISNTQTQLNQLKDEQ 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 916 ENLQKKVERLHAEQLALQEGISGRDSEIKQLRSELKDaidenkTVREAKVGLENSLKAVQENMSAQEGQFKQKIADIKGS 995
Cdd:TIGR04523 263 NKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISD------LNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKI 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 996 VDELQIKLKSLQEVRDHLESRNEELKRKLKdaqELQNMVDKERKLNSSLREDFDKLEQTKLDLEEQLRakkvEIDRRSKE 1075
Cdd:TIGR04523 337 ISQLNEQISQLKKELTNSESENSEKQRELE---EKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQ----NQEKLNQQ 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1076 LGEVTKDCENIRSDLEAQTNDFLKERETLNLTISDLRLHNEQLLETSKNYlsditaaNNLNLEMKKNLHDLTKECKSLRS 1155
Cdd:TIGR04523 410 KDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNL-------DNTRESLETQLKVLSRSINKIKQ 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1156 DLQSKEEYFQTQKQLLDEtisnLKEENRKMEEKLSSGNKalkedceklrstlESKELILQQNKQELEerltvINEKNGKN 1235
Cdd:TIGR04523 483 NLEQKQKELKSKEKELKK----LNEEKKELEEKVKDLTK-------------KISSLKEKIEKLESE-----KKEKESKI 540
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1236 ALLDAQLKSNETaftslrkawikqslaieaaNKRSLEMEQKVDKRTREYEELRSTLKTREINFRSEKERMDGTISSLLED 1315
Cdd:TIGR04523 541 SDLEDELNKDDF-------------------ELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDL 601
|
650
....*....|....*....
gi 665407636 1316 KRNLEEKLCTVTELLAKLK 1334
Cdd:TIGR04523 602 IKEIEEKEKKISSLEKELE 620
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
170-1070 |
5.76e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.73 E-value: 5.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 170 AIDTMQVDYNTIQQKYLQLQDEYRHLELRSDEQCQ--------QLQDENSK-----LQAEIGTLKER---VEEIHSELLE 233
Cdd:TIGR00606 187 ALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEirdqitskEAQLESSReivksYENELDPLKNRlkeIEHNLSKIMK 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 234 VPNPDTHPEDMELQNQELKKRLSKLQWEfdeiqlnyeclsnELMSTIQECDALREEHkQRTTNSDLESMKSSGVGTECSD 313
Cdd:TIGR00606 267 LDNEIKALKSRKKQMEKDNSELELKMEK-------------VFQGTDEQLNDLYHNH-QRTVREKERELVDCQRELEKLN 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 314 PENELdtdLLQQFTKLSKSIQQIELTdysggrrlfiyNHAEQDQSVPSLKLCLEPAKYLEGDGKQHDASDSVFLKGFLKC 393
Cdd:TIGR00606 333 KERRL---LNQEKTELLVEQGRLQLQ-----------ADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 394 QRfqivkinqeqnlvkeedrmrdiifqlKQEVDGKKNLIEEEKEVINNLRAQITSLNQIETIKNQNAKTKILCEELQTKD 473
Cdd:TIGR00606 399 VI--------------------------ERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKK 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 474 TVQTANKQesQEVLTLKTSLAHLKSKVCELQKKLEKQSEDEKISELQsdigeisecCLSMELKlaDIVNWQAEELRPLDQ 553
Cdd:TIGR00606 453 QEELKFVI--KELQQLEGSSDRILELDQELRKAERELSKAEKNSLTE---------TLKKEVK--SLQNEKADLDRKLRK 519
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 554 LQESGVELQHHSTTAEESLNVEKPIQEQTERTLTTEYERRIE------------QLEESLQRAQEELSILEKRKTDENKS 621
Cdd:TIGR00606 520 LDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDEltsllgyfpnkkQLEDWLHSKSKEINQTRDRLAKLNKE 599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 622 LQleymaKIETSENENRSKfraycldlketQKRYEEQLQQTNEKLASVTTQCQVHLDVikRSLQEKITQAEKERNELAVr 701
Cdd:TIGR00606 600 LA-----SLEQNKNHINNE-----------LESKEEQLSSYEDKLFDVCGSQDEESDL--ERLKEEIEKSSKQRAMLAG- 660
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 702 hkaelekiretlkeKESSYKEKLRQAEEERDKEISRLEVMRNTIAELHKTNSDREVELEGVKMEKCQLKKLYDKSMLELE 781
Cdd:TIGR00606 661 --------------ATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRD 726
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 782 QLQCtadqkssdLLPGSSNEnIDDLQKKCDQYVQDLELLRGEKAELLSEIQKINGQHSNTIKKLEEIEAEM--ITLTTQK 859
Cdd:TIGR00606 727 EMLG--------LAPGRQSI-IDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLtdVTIMERF 797
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 860 ELERCEIAEKLETFKSKEADIKEALHCAQLRL------HAYDKLVCEYERLKGCLSDSNKLSENLQKKVERLHAEQLALQ 933
Cdd:TIGR00606 798 QMELKDVERKIAQQAAKLQGSDLDRTVQQVNQekqekqHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIG 877
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 934 EGISGRDSEIKQLRSELKDAIDENKTVREAKVGLENSLKAVQENMSAQEGQFKQKIADIKGSVDELQIKLKSLQEVRDHL 1013
Cdd:TIGR00606 878 TNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYM 957
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....*..
gi 665407636 1014 ESrneeLKRKLKDAQELQNMvDKERKLNsSLREDFDKLEQTKLDLEEQLRAKKVEID 1070
Cdd:TIGR00606 958 KD----IENKIQDGKDDYLK-QKETELN-TVNAQLEECEKHQEKINEDMRLMRQDID 1008
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
705-1234 |
6.23e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 47.74 E-value: 6.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 705 ELEKIRETLKEKESSYKEKLRQAEEERDKeisrLEVMRNTIAELhKTNSDREVELEGVKMEKCqlKKLYDKSMLELEQLQ 784
Cdd:TIGR01612 752 DLNKILEDFKNKEKELSNKINDYAKEKDE----LNKYKSKISEI-KNHYNDQINIDNIKDEDA--KQNYDKSKEYIKTIS 824
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 785 CTADQKSSDLlpGSSNENIDDLQKKCDQYV---------------QDLELLRGEKAELLSEIQKINGQHSNTIKKL---- 845
Cdd:TIGR01612 825 IKEDEIFKII--NEMKFMKDDFLNKVDKFInfennckekidseheQFAELTNKIKAEISDDKLNDYEKKFNDSKSLinei 902
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 846 -EEIEAEMITLTTQKE----LERCE-IAEKLETFKSKEADIKEalhcaqlRLHAYDKLVCEYERLKGclSDSNKLSENLQ 919
Cdd:TIGR01612 903 nKSIEEEYQNINTLKKvdeyIKICEnTKESIEKFHNKQNILKE-------ILNKNIDTIKESNLIEK--SYKDKFDNTLI 973
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 920 KKVERLHA--EQLALQEgISGRDSEIKQLRSELKDAIDENKtvreakvglENSLKAVQENMSAQEGQFKQKIADIKGSVD 997
Cdd:TIGR01612 974 DKINELDKafKDASLND-YEAKNNELIKYFNDLKANLGKNK---------ENMLYHQFDEKEKATNDIEQKIEDANKNIP 1043
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 998 ELQIKL-KSLQEVRDHLES---RNEEL--KRKLKDAQ-ELQNMVDKERKLNSSLREDFDKLEQTKL-----DLEEQLRAK 1065
Cdd:TIGR01612 1044 NIEIAIhTSIYNIIDEIEKeigKNIELlnKEILEEAEiNITNFNEIKEKLKHYNFDDFGKEENIKYadeinKIKDDIKNL 1123
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1066 KVEIDRRSKELGEVTKDCENIRSDLEAQTNDFLKeretlnltISDLRLHNEQLLETSK---NYLSDITAANNLNLEMKKN 1142
Cdd:TIGR01612 1124 DQKIDHHIKALEEIKKKSENYIDEIKAQINDLED--------VADKAISNDDPEEIEKkieNIVTKIDKKKNIYDEIKKL 1195
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1143 LHDLTKECKSLRSDLQSKEEYFQTQKQLLDETISNLKEENRKMEEKLSSGNKALKE-DCEKLRSTLESKELILQQNKQEL 1221
Cdd:TIGR01612 1196 LNEIAEIEKDKTSLEEVKGINLSYGKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDlDEIKEKSPEIENEMGIEMDIKAE 1275
|
570
....*....|...
gi 665407636 1222 EERLTVINEKNGK 1234
Cdd:TIGR01612 1276 METFNISHDDDKD 1288
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
969-1105 |
1.53e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.92 E-value: 1.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 969 NSLKAVQENMSAQEGQFKQKIADIKGSVDELQIKLKSLQEVRDHLESRNEELKRKLKDAQELQNMVDKERKLNS------ 1042
Cdd:COG1579 20 DRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEAlqkeie 99
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 665407636 1043 SLREDFDKLEQTKLDLEEQLRAKKVEIDRRSKELGEVTKDCENIRSDLEAQTNDFLKERETLN 1105
Cdd:COG1579 100 SLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELE 162
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
465-741 |
1.78e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.88 E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 465 LCEELQTKDTVQTANKQESQEVLTLKTSLAHLKSKVCELQKKLEKQSEDEKISELQsdigEISECCLSMELkladivnwq 544
Cdd:pfam17380 308 KAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELE----RIRQEEIAMEI--------- 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 545 aEELRPLDQLQesgVELQHHSTTAEESLNVEKP--IQEQTERTLTTEYERRIEQLEESLQRA-QEELSILEKRKTDENKS 621
Cdd:pfam17380 375 -SRMRELERLQ---MERQQKNERVRQELEAARKvkILEEERQRKIQQQKVEMEQIRAEQEEArQREVRRLEEERAREMER 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 622 LQLEYMAKIETSE-----NENRSKFRAYCLDLKETQKRYEEQLQQTNEKLASVTTQCQVHLDVIKRSLQEKITQAEKERN 696
Cdd:pfam17380 451 VRLEEQERQQQVErlrqqEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIY 530
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 665407636 697 ELAVRHKAELEKIRETLKEKESSYKEKLRQAEEERdkeiSRLEVM 741
Cdd:pfam17380 531 EEERRREAEEERRKQQEMEERRRIQEQMRKATEER----SRLEAM 571
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1131-1343 |
2.00e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 2.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1131 AANNLNLEMKKNLHDLTKECKSLRSDL---QSKEEYFQTQKQLLDETISNLKEENRKMEEKLSSGNKALKEdcekLRSTL 1207
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELaalKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE----LEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1208 ESKELILQQNKQELEERLTVInEKNGKNALLDAQLKSNETAFTSLRKAWIKQslaieaankrsleMEQKVDKRTREYEEL 1287
Cdd:COG4942 93 AELRAELEAQKEELAELLRAL-YRLGRQPPLALLLSPEDFLDAVRRLQYLKY-------------LAPARREQAEELRAD 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 665407636 1288 RSTLKTREINFRSEKERMDGTISSLLEDKRNLEEKLCTVTELLAKLKRELPALHTQ 1343
Cdd:COG4942 159 LAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAE 214
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1004-1345 |
2.77e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.84 E-value: 2.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1004 KSLQEVRDHLESRnEELKRKLKDAQELQNMVDKERKLNSslredfdKLEQTKLDLEEQLRAKKVEIDRRSKELGEVTKDC 1083
Cdd:COG5022 797 IKLQPLLSLLGSR-KEYRSYLACIIKLQKTIKREKKLRE-------TEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKET 868
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1084 ENIRSdleaQTNDFLKERETLNLTISDlrlhneqlletsknylSDITAANNLNLEMKKNLHDLTKECKS-LRSDLQSKEE 1162
Cdd:COG5022 869 IYLQS----AQRVELAERQLQELKIDV----------------KSISSLKLVNLELESEIIELKKSLSSdLIENLEFKTE 928
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1163 YFQTQKQLLD----ETISNLKEENRKMEEKLSSGNKALKEDCEKLRSTLESKELILQQNKQELEERLTVINEKNGKNALL 1238
Cdd:COG5022 929 LIARLKKLLNnidlEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQY 1008
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1239 DA------QLKSNETAFTSLRKAwIKQSLAIEAANKRSLEMEQKVDKRTREYEELRSTLKtrEINFRSEKERMDGTISSL 1312
Cdd:COG5022 1009 GAlqestkQLKELPVEVAELQSA-SKIISSESTELSILKPLQKLKGLLLLENNQLQARYK--ALKLRRENSLLDDKQLYQ 1085
|
330 340 350
....*....|....*....|....*....|...
gi 665407636 1313 LEDKRNLEEKLCTVTELLAKLKRELPALHTQKV 1345
Cdd:COG5022 1086 LESTENLLKTINVKDLEVTNRNLVKPANVLQFI 1118
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
654-881 |
2.79e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 2.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 654 RYEEQLQQTNEKLASVTTQCQVHLDVIKRSLQEKITQAEKERnelaVRHKAElEKIRETLKEKESSYKEKLRQAEEERDK 733
Cdd:pfam17380 259 RYNGQTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQER----LRQEKE-EKAREVERRRKLEEAEKARQAEMDRQA 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 734 EI----SRLEVMRNTiaELHKTN-SDREVELEGVKMEKCQLKKlydKSMLELEQLQCTADQKSSDL---LPGSSNENI-- 803
Cdd:pfam17380 334 AIyaeqERMAMERER--ELERIRqEERKRELERIRQEEIAMEI---SRMRELERLQMERQQKNERVrqeLEAARKVKIle 408
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 665407636 804 DDLQKKCDQYVQDLELLRGEKAELLSEiqkingqhsnTIKKLEEIEAEMITLTTQKELERceiAEKLETFKSKEADIK 881
Cdd:pfam17380 409 EERQRKIQQQKVEMEQIRAEQEEARQR----------EVRRLEEERAREMERVRLEEQER---QQQVERLRQQEEERK 473
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
421-860 |
2.91e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.42 E-value: 2.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 421 LKQEVDGKKNLIEEEKEVINNLRAQI--------TSLNQIETIKNQNAKTKilcEELQTKDTVQTANKQESQ----EVLT 488
Cdd:PRK02224 277 LAEEVRDLRERLEELEEERDDLLAEAglddadaeAVEARREELEDRDEELR---DRLEECRVAAQAHNEEAEslreDADD 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 489 LKTSLAHLKSKVCELQKKLEKQSED-----EKISELQSDIGEISECCLSMELKLADIVNWQAEELRPLDQLQESGVELQH 563
Cdd:PRK02224 354 LEERAEELREEAAELESELEEAREAvedrrEEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEA 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 564 HSTTAEESLN-------------VEKPIQEQTERTLTTEYERRIEQLEESLQRAQEELSILEKRkTDENKSLQlEYMAKI 630
Cdd:PRK02224 434 TLRTARERVEeaealleagkcpeCGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEER-LERAEDLV-EAEDRI 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 631 ETSEnENRSKFRAYCLDLKETQKRYEEQLQQTNEKLASVTTQCQVHLDvikrSLQEKITQAEKERNELavrhkAELEKIR 710
Cdd:PRK02224 512 ERLE-ERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKRE----AAAEAEEEAEEAREEV-----AELNSKL 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 711 ETLKEKESSYkEKLRQAEEERDKEISRLEVMRNTIAELHKTNSDREVELEGVKMEKCQLKKLYDKSMLELEQlqctadqk 790
Cdd:PRK02224 582 AELKERIESL-ERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAR-------- 652
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 791 ssdllpgSSNENIDDLQKKCDQYvqdLELLRGEKAELLSEIqkinGQHSNTIKKLEEIEAEMITLTTQKE 860
Cdd:PRK02224 653 -------EDKERAEEYLEQVEEK---LDELREERDDLQAEI----GAVENELEELEELRERREALENRVE 708
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
820-1097 |
3.28e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 45.30 E-value: 3.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 820 LRGEKAELLSEIQKINGQHSNTIKklEEIEAEMITLTTqKELERC-EIAEKLETFKSKEADIKEAlhcaqlrlhaydKLV 898
Cdd:PRK05771 14 LKSYKDEVLEALHELGVVHIEDLK--EELSNERLRKLR-SLLTKLsEALDKLRSYLPKLNPLREE------------KKK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 899 CEYERLKGCLSDSNKLSENLQKKVERLHAEQLALQEGISGRDSEIKQLR------SELKDAID-ENKTVREAKVGLENSL 971
Cdd:PRK05771 79 VSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEpwgnfdLDLSLLLGfKYVSVFVGTVPEDKLE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 972 KAVQEN-----------------MSAQEGQFKQKIADI--KGSVDELQIK-LKSLQEVRDHLESRNEELKRKLKDaqelq 1031
Cdd:PRK05771 159 ELKLESdvenveyistdkgyvyvVVVVLKELSDEVEEElkKLGFERLELEeEGTPSELIREIKEELEEIEKERES----- 233
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 665407636 1032 nmvdkerkLNSSLREDFDKLEQTKLDLEEQLRAKKVEIDRRSKEL---------GEV-TKDCENIRSDLEAQTNDF 1097
Cdd:PRK05771 234 --------LLEELKELAKKYLEELLALYEYLEIELERAEALSKFLktdktfaieGWVpEDRVKKLKELIDKATGGS 301
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
647-1208 |
4.01e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 44.73 E-value: 4.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 647 DLKETQKRYEEQLQQTNEKLASVTTQCQVHLDViKRSLQEKITQAEKERNELAVRHKAELEKIRETLKEKESSYKeKLRQ 726
Cdd:pfam05557 17 EKKQMELEHKRARIELEKKASALKRQLDRESDR-NQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNK-KLNE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 727 AEEERDKEISRLEVMRNTIAELHKTNSDREVELEGVKMEKCQLK---KLYDKSMLELEQLQCTADQKSSDLLpgSSNENI 803
Cdd:pfam05557 95 KESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQerlDLLKAKASEAEQLRQNLEKQQSSLA--EAEQRI 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 804 DDLQKKCDQYVQDLELLRGEKAELLS--EIQKINGQHSNTIKKLEEIEAEMITLTTQKElerceiaeKLETFKSKEADIK 881
Cdd:pfam05557 173 KELEFEIQSQEQDSEIVKNSKSELARipELEKELERLREHNKHLNENIENKLLLKEEVE--------DLKRKLEREEKYR 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 882 EALHCAQLRLHAYDKLVCEYERLKGCLSDSNKLSENLQKKVERLHAEQLALQEGISGRDSEIKQLRSELKDAIDENKTVR 961
Cdd:pfam05557 245 EEAATLELEKEKLEQELQSWVKLAQDTGLNLRSPEDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQELAQYL 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 962 EAKVGLENSLKavqeNMSAQEGQFKQKIADIKGSVDELQIKLKSLqevrDHLESRNEELKRKLKDAQELQNMVDKERKLN 1041
Cdd:pfam05557 325 KKIEDLNKKLK----RHKALVRRLQRRVLLLTKERDGYRAILESY----DKELTMSNYSPQLLERIEEAEDMTQKMQAHN 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1042 SSLREDFDKLEQTKLDLEEQLRAKKVEIDRRSKelgevtkdcenirsdleaqtNDFLKERETLNLTISDLRLHNEQLLet 1121
Cdd:pfam05557 397 EEMEAQLSVAEEELGGYKQQAQTLERELQALRQ--------------------QESLADPSYSKEEVDSLRRKLETLE-- 454
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1122 sknylsditaANNLNLEMKKNLHDLTKECKSLRSDLQSKEEYFQtqkQLLDETISNLKEENRKMEEKLSSGNKALKEDCE 1201
Cdd:pfam05557 455 ----------LERQRLREQKNELEMELERRCLQGDYDPKKTKVL---HLSMNPAAEAYQQRKNQLEKLQAEIERLKRLLK 521
|
....*..
gi 665407636 1202 KLRSTLE 1208
Cdd:pfam05557 522 KLEDDLE 528
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
930-1162 |
4.18e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 4.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 930 LALQEGISGRDSEIKQLRSELKDAIDENKTVREAKVGLENSLKAVQENMSAQEgqfkQKIADIKGSVDELQIKLKSLQ-- 1007
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----RRIRALEQELAALEAELAELEke 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1008 --EVRDHLESRNEELKRKLKDAQELQNMVDKERKLNSSLREDFDKLEQTKLDLEEQLRAKKVEIDRRSKELGEVTKDCEN 1085
Cdd:COG4942 92 iaELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 665407636 1086 IRSDLEAQTNDFLKERETLNLTISDlrlhNEQLLETSKnylSDITAANNLNLEMKKNLHDLTKECKSLRSDLQSKEE 1162
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAE----RQKLLARLE---KELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
408-976 |
4.19e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 4.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 408 VKEEDRMRDIIFQLKQEVDGKKNLIEEEKEVINNLRAQItslnqietiknqnAKTKILCEELQTKDTVQTANKQESQEVL 487
Cdd:PRK03918 230 VKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERI-------------EELKKEIEELEEKVKELKELKEKAEEYI 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 488 TLKTSLAHLKSKVCELQKKLEKQSedEKISELQSDIGEISEcclsMELKLADIVNWQAEELRPLDQLQESgvelqhhstt 567
Cdd:PRK03918 297 KLSEFYEEYLDELREIEKRLSRLE--EEINGIEERIKELEE----KEERLEELKKKLKELEKRLEELEER---------- 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 568 aEESLNVEKPIQEQTERTLTTEYERRIEQLEeslqraqEELSILEKRKTDENKSLQleymaKIETSENENRSKfraycld 647
Cdd:PRK03918 361 -HELYEEAKAKKEELERLKKRLTGLTPEKLE-------KELEELEKAKEEIEEEIS-----KITARIGELKKE------- 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 648 lketqkryEEQLQQTNEKLASVTTQCQvhldVIKRSLQekitqaEKERNELAVRHKAELEKIRETLKE---KESSYKEKL 724
Cdd:PRK03918 421 --------IKELKKAIEELKKAKGKCP----VCGRELT------EEHRKELLEEYTAELKRIEKELKEieeKERKLRKEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 725 RQAEEERDKEiSRLEVMRNTIAELHKTnsdrEVELEGVKMEKCQLK-KLYDKSMLELEQLQCTADQKSSDLlpgssnENI 803
Cdd:PRK03918 483 RELEKVLKKE-SELIKLKELAEQLKEL----EEKLKKYNLEELEKKaEEYEKLKEKLIKLKGEIKSLKKEL------EKL 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 804 DDLQKKCDQYVQDLELLRGEKAELLSEIQKINGQH----SNTIKKLEEIEAEMITLTTQKElercEIAEKLETFKSKEAD 879
Cdd:PRK03918 552 EELKKKLAELEKKLDELEEELAELLKELEELGFESveelEERLKELEPFYNEYLELKDAEK----ELEREEKELKKLEEE 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 880 IKEALHCAQLRLHAYDKLVCEYERLKGCLSDsnKLSENLQKKVERLHAEQLALQEGISGRDSEIKQLRSELKDAIDENKT 959
Cdd:PRK03918 628 LDKAFEELAETEKRLEELRKELEELEKKYSE--EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE 705
|
570
....*....|....*..
gi 665407636 960 VREAKVGLENSLKAVQE 976
Cdd:PRK03918 706 REKAKKELEKLEKALER 722
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
918-1086 |
4.87e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.62 E-value: 4.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 918 LQKKVERLHAEQLALQEGISGRDSEIKQLRSELKDAIDENKTVREAKVGLENSLKAVQENMSAQEG---------QFKQ- 987
Cdd:PHA02562 218 KQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKggvcptctqQISEg 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 988 --KIADIKGSVDELQIKLKSLQEVRDHLESRNEELKRKLKDAQELQNMVDKERKLNSSLREDFDKLEQTKLDLEEQLRAK 1065
Cdd:PHA02562 298 pdRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDN 377
|
170 180
....*....|....*....|.
gi 665407636 1066 KVEIDRRSKELGEVTKDCENI 1086
Cdd:PHA02562 378 AEELAKLQDELDKIVKTKSEL 398
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
796-1029 |
5.88e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.05 E-value: 5.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 796 PGSSNENIDDLQKKCDQYVQDLELLRGEKAELLSEIQKINGQHSNTIKKLEEIEAEMitlttqKELERcEIAEKLETFKS 875
Cdd:COG3883 11 PAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEI------DKLQA-EIAEAEAEIEE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 876 KEADIKEALHCAQLRLHAYDKLvceyERLKGclsdsnklSENLQKKVERLHAeqlalqegisgrdseIKQLRSELKDAID 955
Cdd:COG3883 84 RREELGERARALYRSGGSVSYL----DVLLG--------SESFSDFLDRLSA---------------LSKIADADADLLE 136
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 665407636 956 ENKTVREAKVGLENSLKAVQENMSAQEGQFKQKIADIKGSVDELQIKLKSLQEVRDHLESRNEELKRKLKDAQE 1029
Cdd:COG3883 137 ELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEA 210
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
589-775 |
5.91e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 5.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 589 EYERRIEQLEESLQRAQEELSILEKRKTDENKSLQL--EYMAKIETSENENRSKFRAYCLDLKETQKRYEEQLQQ----- 661
Cdd:COG4942 38 ELEKELAALKKEEKALLKQLAALERRIAALARRIRAleQELAALEAELAELEKEIAELRAELEAQKEELAELLRAlyrlg 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 662 TNEKLASVTTQCQVHLDVIKRSLQEKITQAEKERNELAVRHKAELEKIRETLKEKESSYKEKLRQAEEERDKEISRLEVM 741
Cdd:COG4942 118 RQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAER 197
|
170 180 190
....*....|....*....|....*....|....
gi 665407636 742 RNTIAELHKTNSDREVELEGVKMEKCQLKKLYDK 775
Cdd:COG4942 198 QKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
811-1255 |
9.55e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 43.41 E-value: 9.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 811 DQYVQDLELLRGEKAELLSE--IQKINGQHSNTIKKLEEIEAEMITLT----TQKELERCEIAEKLETFKSKEADIkEAL 884
Cdd:COG5185 117 DILISLLYLYKSEIVALKDEliKVEKLDEIADIEASYGEVETGIIKDIfgklTQELNQNLKKLEIFGLTLGLLKGI-SEL 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 885 HCAQLRLHAYDKLVCEYERLKGclsdSNKLSENLQKKVERLHAEQLAlqEGISGRDSEIKQLRSELKDAIDENKTVREAK 964
Cdd:COG5185 196 KKAEPSGTVNSIKESETGNLGS----ESTLLEKAKEIINIEEALKGF--QDPESELEDLAQTSDKLEKLVEQNTDLRLEK 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 965 VGLEN-SLKAVQENMSAQEGQFKQKIADIKGSVDELQIKLkslqevrdHLESRNEELKRklkdAQELQNMVDKERKLNSS 1043
Cdd:COG5185 270 LGENAeSSKRLNENANNLIKQFENTKEKIAEYTKSIDIKK--------ATESLEEQLAA----AEAEQELEESKRETETG 337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1044 LREDFDKLEQTKLDLEEQLRAKKVEID---------RRSKELGEVTKDCENIRSDLEAQTNDFLKERETLNLTISDLRLH 1114
Cdd:COG5185 338 IQNLTAEIEQGQESLTENLEAIKEEIEnivgevelsKSSEELDSFKDTIESTKESLDEIPQNQRGYAQEILATLEDTLKA 417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1115 NEQLLEtskNYLSDITAANNLNLEMKKNLHDLTKECKSLRSDLQSKEEYFQTQKQllDETISNLKEENRKMEEKLSSGNK 1194
Cdd:COG5185 418 ADRQIE---ELQRQIEQATSSNEEVSKLLNELISELNKVMREADEESQSRLEEAY--DEINRSVRSKKEDLNEELTQIES 492
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 665407636 1195 ALKEDCEKLRSTLESKELILQQNKQELEERLTVINEKNGKNALLDAQLKSNETAFTSLRKA 1255
Cdd:COG5185 493 RVSTLKATLEKLRAKLERQLEGVRSKLDQVAESLKDFMRARGYAHILALENLIPASELIQA 553
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
871-1081 |
9.85e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 9.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 871 ETFKSKEADIKEALHCAQLRLHAYDKLVCEYERLKGCLSDSNKLSENLQKKVERLHAEQLALQEGISGRDSEIKQLRSEL 950
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 951 KDAIDE-NKTVREA-KVGLENSLKAVQENMSAQEGQ-----FKQKIADIKGSVDELQIKLKSLQEVRDHLESRNEELKRK 1023
Cdd:COG4942 100 EAQKEElAELLRALyRLGRQPPLALLLSPEDFLDAVrrlqyLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 665407636 1024 LKDAQE----LQNMVDKERKLNSSLREDFDKLEQTKLDLEEQLRAKKVEIDRRSKELGEVTK 1081
Cdd:COG4942 180 LAELEEeraaLEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
942-1336 |
1.23e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 942 EIKQLRSELKDAIDENKTVREAKVGLENSLKAVQenMSAQEGQFKQKIADIKGSVDELQIKLKSLQEVRDHLESRNEELK 1021
Cdd:COG4717 96 ELEELEEELEELEAELEELREELEKLEKLLQLLP--LYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELA 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1022 RKLKDAQELQNMVDKERKLN-SSLREDFDKLEQTKLDLEEQLRAKKVEIDRRSKELGEVTKDCENIRSDLEAQTNDFLKE 1100
Cdd:COG4717 174 ELQEELEELLEQLSLATEEElQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLL 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1101 RETLNLTISDLRLHNEQLLETSKNYLSDITAANNLNLEMkknlhdLTKECKSLRSDLQsKEEYFQTQKQLLDETISNLKE 1180
Cdd:COG4717 254 IAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLL------LAREKASLGKEAE-ELQALPALEELEEEELEELLA 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1181 ENRKMEEKLSSGNKALKEDCEKLRStleskeliLQQNKQELEERLTVINEKNGKNALLDAQLKSNETAFTslrkAWIKQS 1260
Cdd:COG4717 327 ALGLPPDLSPEELLELLDRIEELQE--------LLREAEELEEELQLEELEQEIAALLAEAGVEDEEELR----AALEQA 394
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 665407636 1261 LAIEAANKRSLEMEQKVDKRTREYEELRSTLKTREInfRSEKERMDGTISSLLEDKRNLEEKLCTVTELLAKLKRE 1336
Cdd:COG4717 395 EEYQELKEELEELEEQLEELLGELEELLEALDEEEL--EEELEELEEELEELEEELEELREELAELEAELEQLEED 468
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
916-1095 |
1.38e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.89 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 916 ENLQKKVERLHAEQLALQEGISGRDSEIKQLRSELKDAIDENKTVREAKVGLENSLKAVQENMSAQEGQFKQKIADI--- 992
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALyrs 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 993 ---------------------------------KGSVDELQIKLKSLQEVRDHLESRNEELKRKLKDAQ----ELQNMVD 1035
Cdd:COG3883 99 ggsvsyldvllgsesfsdfldrlsalskiadadADLLEELKADKAELEAKKAELEAKLAELEALKAELEaakaELEAQQA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1036 KERKLNSSLREDFDKLEQTKLDLEEQLRAKKVEIDRRSKELGEVTKDCENIRSDLEAQTN 1095
Cdd:COG3883 179 EQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 238
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
402-716 |
1.48e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.00 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 402 NQEQNLVKEEDRMRDIIFQLKQEVDGKKNLIEEEKEVINNLRAQITSLNQ---IETIKNQNAKTKILcEELQTKDTVQTA 478
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQdiaRLEERRRELEERLE-ELEEELAELEEE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 479 NKQESQEVLTLKTSLAHLKSKVCELQKKLE--KQSEDEKISELQSDIGEISECCLSMELKLADIVNWQAEELRPLDQLQE 556
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAeaEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 557 SGVELQHHSTTAEESLNVEKPIQEQTERTLTTEYERRIEQLEESLQRAQEELSILEKRKTDEnksLQLEYMAKIETSENE 636
Cdd:COG1196 412 LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA---LLEAALAELLEELAE 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 637 NRSKFRAycldLKETQKRYEEQLQ-----QTNEKLASVTTQCQVHLDVIKRSLQEKITQAEKERNELAVRHKAELEKIRE 711
Cdd:COG1196 489 AAARLLL----LLEAEADYEGFLEgvkaaLLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIE 564
|
....*
gi 665407636 712 TLKEK 716
Cdd:COG1196 565 YLKAA 569
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
995-1232 |
1.74e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.98 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 995 SVDELQIKLKSLQEvRDHLESRNEELKRKLKDAQELQNMVDKERKlnsslreDFDKLEQTKLDLEEQLRAKKVEIDRRSK 1074
Cdd:PRK11281 37 TEADVQAQLDALNK-QKLLEAEDKLVQQDLEQTLALLDKIDRQKE-------ETEQLKQQLAQAPAKLRQAQAELEALKD 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1075 ELGEVTKDCENIRS--DLEAQTNDFLKERETLNLTISDLrlhNEQL--LET-SKNYLSDITAANNLNLEMKKNLHDLTKE 1149
Cdd:PRK11281 109 DNDEETRETLSTLSlrQLESRLAQTLDQLQNAQNDLAEY---NSQLvsLQTqPERAQAALYANSQRLQQIRNLLKGGKVG 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1150 CKSLRSDLQSKeeyFQTQKQLLDETISNLKeenrkmeeKLSSGNKALKEDCEKLRSTLESKELILQQNKQELEErltVIN 1229
Cdd:PRK11281 186 GKALRPSQRVL---LQAEQALLNAQNDLQR--------KSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQE---AIN 251
|
...
gi 665407636 1230 EKN 1232
Cdd:PRK11281 252 SKR 254
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
968-1292 |
2.03e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 968 ENSLKAVQENMsaqegqfkQKIADIkgsVDELQIKLKSLQEVRDHLEsRNEELKRKLKDAQ------ELQNMVDKERKLN 1041
Cdd:TIGR02168 178 ERKLERTRENL--------DRLEDI---LNELERQLKSLERQAEKAE-RYKELKAELRELElallvlRLEELREELEELQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1042 SSLREDFDKLEQTKLDLE------EQLRAKKVEIDRRSKELGEVTKDCENIRSDLEAQTNDFLKERETLNLTISDLRLHN 1115
Cdd:TIGR02168 246 EELKEAEEELEELTAELQeleeklEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1116 EQLLETSKNYLSDITaannlnlEMKKNLHDLTKECKSLRSDLQSKEEYFQTQKQLLDETISNLKEENRKMEEKLSSGNkA 1195
Cdd:TIGR02168 326 EELESKLDELAEELA-------ELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA-S 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1196 LKEDCEKLRSTLESKELILQQNKQELEERLTVINEKNGKnaLLDAQLKSNETAFTSLRKAWIKQSLAIEAANKRSLEMEQ 1275
Cdd:TIGR02168 398 LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELK--ELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475
|
330
....*....|....*..
gi 665407636 1276 KVDKRTREYEELRSTLK 1292
Cdd:TIGR02168 476 ALDAAERELAQLQARLD 492
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
916-1025 |
2.37e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.15 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 916 ENLQKKVERLHAEQLALQEGISGRDSEIKQLRSELKDAidenKTVREAKVGLENslkavqenmsaqegqfkqKIADIKGS 995
Cdd:COG2433 416 RRLEEQVERLEAEVEELEAELEEKDERIERLERELSEA----RSEERREIRKDR------------------EISRLDRE 473
|
90 100 110
....*....|....*....|....*....|
gi 665407636 996 VDELQIKLKSLQEVRDHLESRNEELKRKLK 1025
Cdd:COG2433 474 IERLERELEEERERIEELKRKLERLKELWK 503
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
436-963 |
2.49e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.58 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 436 KEVINNLRAQITSLNQIEtiknqnaktkilcEELQTK-DTVQTANKQESQEVLTLKTSLAHLKSKVCELQKKL-EKQSED 513
Cdd:PRK01156 172 KDVIDMLRAEISNIDYLE-------------EKLKSSnLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMdDYNNLK 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 514 EKISELQSDIGEISEccLSMELKLADI-VNWQAEELRPLDQLQESGVELQHHSTTAE-----ESLNVEKPIQEQTE---- 583
Cdd:PRK01156 239 SALNELSSLEDMKNR--YESEIKTAESdLSMELEKNNYYKELEERHMKIINDPVYKNrnyinDYFKYKNDIENKKQilsn 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 584 -RTLTTEYERRIEQLEEsLQRAQEELSILEKRKTDENKSLQ-----------------------LEYMAKIETSENENRS 639
Cdd:PRK01156 317 iDAEINKYHAIIKKLSV-LQKDYNDYIKKKSRYDDLNNQILelegyemdynsylksieslkkkiEEYSKNIERMSAFISE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 640 KFRAYCLDLKETQKRYEE---QLQQTNEKLASvttqcqvhLDVIKRSLQEKITQAEKERNELAVRHKA----------EL 706
Cdd:PRK01156 396 ILKIQEIDPDAIKKELNEinvKLQDISSKVSS--------LNQRIRALRENLDELSRNMEMLNGQSVCpvcgttlgeeKS 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 707 EKIRETLKEKESSYKEKLRQAE-------EERDKEISRLEVM-----RNTIAELHKTnSDREVELEGVKMEKCQLKKLYD 774
Cdd:PRK01156 468 NHIINHYNEKKSRLEEKIREIEievkdidEKIVDLKKRKEYLeseeiNKSINEYNKI-ESARADLEDIKIKINELKDKHD 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 775 KSMLELEQLQCTA----DQKSSD---LLPGSSNENIDDLQKKCDQYVQDLELLRGEKAELLSEIQKINGQHSNTIKKLEE 847
Cdd:PRK01156 547 KYEEIKNRYKSLKledlDSKRTSwlnALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIEN 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 848 iEAEM----ITLTTQKELERCEIAEKLETFKSKEADIKEALHCAQLRLHAYDKLVCEYERLKGCLSDSNKLSENLQKKVE 923
Cdd:PRK01156 627 -EANNlnnkYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIE 705
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 665407636 924 RLHAEQLALQEGISGRDSEIKQLRSeLKDAIDENKTVREA 963
Cdd:PRK01156 706 ILRTRINELSDRINDINETLESMKK-IKKAIGDLKRLREA 744
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
967-1328 |
2.91e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.80 E-value: 2.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 967 LENSLKAVQENMSAQEGQFKQKIADIKGSVDELQIKLKSLQEVRDHLESRNEELKRKLKDAQELQNMVDKERKLNSSLRE 1046
Cdd:pfam07888 46 LLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRA 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1047 D----FDKLEQTKLDLEEQLRAKKVEIDR---RSKELGEVTKDCENIRSDLEAQTNDFLKERETLNLTISDLRLHNEQ-- 1117
Cdd:pfam07888 126 AhearIRELEEDIKTLTQRVLERETELERmkeRAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQrd 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1118 -----LLETSKNYLSDITAANNLNLEMKKnlhdLTKECKSLRSDLQSKEEYFQTQKQLL-------DETISNLKE---EN 1182
Cdd:pfam07888 206 tqvlqLQDTITTLTQKLTTAHRKEAENEA----LLEELRSLQERLNASERKVEGLGEELssmaaqrDRTQAELHQarlQA 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1183 RKMEEKLSSGNKALKEDceklRSTLESKELILQQNKQELEERLtvinekngknALLDAQLKSNETAFTSLRKAwiKQSLA 1262
Cdd:pfam07888 282 AQLTLQLADASLALREG----RARWAQERETLQQSAEADKDRI----------EKLSAELQRLEERLQEERME--REKLE 345
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 665407636 1263 IEAANKRSLEMEQKVDKRtREYEELRSTLKTreinFRSEKERMDGTISSLLEDKRNLEEKLCTVTE 1328
Cdd:pfam07888 346 VELGREKDCNRVQLSESR-RELQELKASLRV----AQKEKEQLQAEKQELLEYIRQLEQRLETVAD 406
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
676-1312 |
3.15e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.03 E-value: 3.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 676 HLDVIKRSLQEKITQAEKERNELAVRHkaelEKIRETLKEKESSYKEKLRQAEEERDK--EISRLEV---------MRNT 744
Cdd:pfam15921 75 HIERVLEEYSHQVKDLQRRLNESNELH----EKQKFYLRQSVIDLQTKLQEMQMERDAmaDIRRRESqsqedlrnqLQNT 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 745 IAELHKTNSDREVELEGVKMEKCQLKKL---YDKSMLELEQLQCTADQKSSDLLPGSSNENI-------DDLQKKCDQYV 814
Cdd:pfam15921 151 VHELEAAKCLKEDMLEDSNTQIEQLRKMmlsHEGVLQEIRSILVDFEEASGKKIYEHDSMSTmhfrslgSAISKILRELD 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 815 QDLELLRGEKAELLSEIQKINGQHSNTIKKLEEIEAEMI-TLTTQKELERCEIAEKLETFKSKEADIKEALHCAQLRLHA 893
Cdd:pfam15921 231 TEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIeQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARN 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 894 YDKL-VCEYERLKGCLSdsnklsenlQKKVERLHAEQLaLQEGISGRDSEIKQLRSELKDAIDENKTVREAKVGLENSLK 972
Cdd:pfam15921 311 QNSMyMRQLSDLESTVS---------QLRSELREAKRM-YEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQ 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 973 AVQENMSAQEGQFKQKIADIKGSVDELQIKLKSLQEVRDHLESRNEELKRK---LKDAQ-ELQNMVDKERKLNSSLREDF 1048
Cdd:pfam15921 381 KLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLealLKAMKsECQGQMERQMAAIQGKNESL 460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1049 DKLEQTKLDLE----------EQLRAKKVEIDRRSKELGEVTKDCENIRSDLEAQTNDFLKERETLnltisDLRLHNEQL 1118
Cdd:pfam15921 461 EKVSSLTAQLEstkemlrkvvEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRV-----DLKLQELQH 535
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1119 LETSKNYLSDITAannlnlemkknlhdltkECKSLRSDLQSKEEYFQTQKQLLDETISNLKEENRKMEEKLSSGNKALKE 1198
Cdd:pfam15921 536 LKNEGDHLRNVQT-----------------ECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKE 598
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1199 dceklrstleskeliLQQNKQELEERLTVINEKNGKNALLDAQLKSNETAFTSLRKAWIKQSLAIEAANKRSLEMEQKVD 1278
Cdd:pfam15921 599 ---------------INDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVK 663
|
650 660 670
....*....|....*....|....*....|....
gi 665407636 1279 KRTREYEELRSTLKTREINFRSEKERMDGTISSL 1312
Cdd:pfam15921 664 TSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKL 697
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1000-1155 |
3.23e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 3.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1000 QIKLKSLQEVRDHLESRNEELKRKLKDA-QELQNMVDKERKLNSSLRE-DFDKLEQtkldLEEQLRAKKVEIDRRSKELG 1077
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLeARLDALREELDELEAQIRGnGGDRLEQ----LEREIERLERELEERERRRA 362
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 665407636 1078 EVTKDCENIRSDLEAQTNDFLKERETLNLTISDLrlhnEQLLETSKNYLSDITAANNlnlEMKKNLHDLTKECKSLRS 1155
Cdd:COG4913 363 RLEALLAALGLPLPASAEEFAALRAEAAALLEAL----EEELEALEEALAEAEAALR---DLRRELRELEAEIASLER 433
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
403-794 |
3.28e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.02 E-value: 3.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 403 QEQNLVKEEDRMRDIIFQLKQevdgKKNLIEEEKEVINNLRAQITSLNQI----ETIKNQNAKTKILCEELQTKDTVQTA 478
Cdd:pfam05483 368 EQQRLEKNEDQLKIITMELQK----KSSELEEMTKFKNNKEVELEELKKIlaedEKLLDEKKQFEKIAEELKGKEQELIF 443
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 479 NKQESQ--------EVLTLKTSLAHLKSKVCELQKKLEKQ---------SEDEKISELQSDIGEISECCLSMELKLADIV 541
Cdd:pfam05483 444 LLQAREkeihdleiQLTAIKTSEEHYLKEVEDLKTELEKEklknieltaHCDKLLLENKELTQEASDMTLELKKHQEDII 523
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 542 NWQAEELRPLDQ---LQESGVELQHHSTTAEESLNVEK-PIQEQTERTLTTEYERRIEQLEESLQRAQEELSILEKRKTD 617
Cdd:pfam05483 524 NCKKQEERMLKQienLEEKEMNLRDELESVREEFIQKGdEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQI 603
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 618 ENKSLQLEYMAKiETSENENRSKFRAYCLDLKETQ-KRYEEQLQQTNEKLASVTTQCQVHLDVIKRSLQEKITQAEKERN 696
Cdd:pfam05483 604 ENKNKNIEELHQ-ENKALKKKGSAENKQLNAYEIKvNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKA 682
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 697 --ELAVRHKAELE-----KIRETLKEKESsYKEKLRQAEEERDKEisrLEVMRNTIAELHKTNSDREVELEGVKMEKCQL 769
Cdd:pfam05483 683 iaDEAVKLQKEIDkrcqhKIAEMVALMEK-HKHQYDKIIEERDSE---LGLYKNKEQEQSSAKAALEIELSNIKAELLSL 758
|
410 420
....*....|....*....|....*
gi 665407636 770 KKLYDKSMLELEQLQCTADQKSSDL 794
Cdd:pfam05483 759 KKQLEIEKEEKEKLKMEAKENTAIL 783
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
594-1118 |
3.58e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.81 E-value: 3.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 594 IEQLEESLQRAQEELSILEKRKTDENKSLQLEYMAKIETSENENRSKFRAYCLD--------LKETQKRYEEQLQQTNEK 665
Cdd:PRK01156 185 IDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKsalnelssLEDMKNRYESEIKTAESD 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 666 LASVTTQCQVHLDVIKRSLQEKITQAEKERNELA--VRHKAELE---KIRETLKEKESSYKEKLRQAEEeRDKEISRLEV 740
Cdd:PRK01156 265 LSMELEKNNYYKELEERHMKIINDPVYKNRNYINdyFKYKNDIEnkkQILSNIDAEINKYHAIIKKLSV-LQKDYNDYIK 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 741 MRNTIAELHKTNSDreveLEGVKMEkcqlkklYDKSMLELEQLQCTADQKSSDLLPGSsneniDDLQKKCDQYVQDLELL 820
Cdd:PRK01156 344 KKSRYDDLNNQILE----LEGYEMD-------YNSYLKSIESLKKKIEEYSKNIERMS-----AFISEILKIQEIDPDAI 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 821 RGEKAELLSEIQKINGQHSN-------TIKKLEEIEAEMITLTTQKELERCeiAEKLETFKSKeaDIKEALHCAQLRLHA 893
Cdd:PRK01156 408 KKELNEINVKLQDISSKVSSlnqriraLRENLDELSRNMEMLNGQSVCPVC--GTTLGEEKSN--HIINHYNEKKSRLEE 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 894 ydklvcEYERLKGCLSDSNKLSENLQKKVERLHAEQLalqEGISGRDSEIKQLRSELKDAIDENKTVREAKVGLEnslKA 973
Cdd:PRK01156 484 ------KIREIEIEVKDIDEKIVDLKKRKEYLESEEI---NKSINEYNKIESARADLEDIKIKINELKDKHDKYE---EI 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 974 VQENMSAQEGQFKQK---------------IADIKGSVDELQIKLKS----LQEVRDHLESRNEELKRKLKDAQELQNMV 1034
Cdd:PRK01156 552 KNRYKSLKLEDLDSKrtswlnalavislidIETNRSRSNEIKKQLNDlesrLQEIEIGFPDDKSYIDKSIREIENEANNL 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1035 DKERKLNSSLREDFDKLEQTKLDLEEQLrAKKVEIDRRSKELGEVTKDCENIRSDLEAQTNDFLKERETLNLTISDLRLH 1114
Cdd:PRK01156 632 NNKYNEIQENKILIEKLRGKIDNYKKQI-AEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTR 710
|
....
gi 665407636 1115 NEQL 1118
Cdd:PRK01156 711 INEL 714
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
382-991 |
6.25e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.16 E-value: 6.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 382 SDSVFLKGFLKCQRFQIVKINQEQNLVKEEDRMRD-IIFQLKQEVDGKKNLIEEEKEVINNLRAQITSLnqietiknQNA 460
Cdd:TIGR04523 103 SDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKkNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEEL--------ENE 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 461 KTKILCEELQTKDTVQTANKQESQEVLTLkTSLAHLKSKVCELQKKLEK-----QSEDEKISELQSDIGEISECCLSMEL 535
Cdd:TIGR04523 175 LNLLEKEKLNIQKNIDKIKNKLLKLELLL-SNLKKKIQKNKSLESQISElkkqnNQLKDNIEKKQQEINEKTTEISNTQT 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 536 KLADIVNWQAEELrplDQLQESGVELQHHSTTAEESLNVEKPIQEQTERTLTTEYERRIEQLEESLQRAQEELSILEKRK 615
Cdd:TIGR04523 254 QLNQLKDEQNKIK---KQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQI 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 616 TDENKSLqleymakieTSENENRSKFRAYCLDLKETQKRYEEQLQQTNEKLASVTTQcqvhldviKRSLQEKITQAEKER 695
Cdd:TIGR04523 331 SQNNKII---------SQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE--------NQSYKQEIKNLESQI 393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 696 NELavrhKAELEKIRETLKEKESSYKeKLRQAEEERDKEISRLEVMR----NTIAELHKTNSDREVELEGVKMEKCQLKK 771
Cdd:TIGR04523 394 NDL----ESKIQNQEKLNQQKDEQIK-KLQQEKELLEKEIERLKETIiknnSEIKDLTNQDSVKELIIKNLDNTRESLET 468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 772 LYDKSMLELEqlqctadqkssdllpgSSNENIDDLQKKCDQYVQDLELLRGEKAELLSEIQKINGQHSNTIKKLEEIEAE 851
Cdd:TIGR04523 469 QLKVLSRSIN----------------KIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESE 532
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 852 MitltTQKELERCEIAEKLETFKS--KEADIKEALhcaqlrlhayDKLVCEYERLKGCLSDSNKLSENLQKKVERLHAEQ 929
Cdd:TIGR04523 533 K----KEKESKISDLEDELNKDDFelKKENLEKEI----------DEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEK 598
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 665407636 930 LALQEGISGRDSEIKQLRSELKDAIDENKTVREAKVGLENSLKAVQENMSAQEGQFKQKIAD 991
Cdd:TIGR04523 599 KDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNK 660
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
647-1160 |
6.41e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 6.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 647 DLKETQKRYE--EQLQQTNEKLASVTTQCQvHLDVIKRSLQekiTQAEKERNELAVRHKAELEKIRETLKEKESSYKEKL 724
Cdd:COG4913 243 ALEDAREQIEllEPIRELAERYAAARERLA-ELEYLRAALR---LWFAQRRLELLEAELEELRAELARLEAELERLEARL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 725 RQAEEERDK-EISRLEVMRNTIAELHKTNSDREVELEGVKMEKCQLKKL-------YDKSMLELEQLQCTADQKSSDLlp 796
Cdd:COG4913 319 DALREELDElEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALlaalglpLPASAEEFAALRAEAAALLEAL-- 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 797 gssNENIDDLQKKCDQYVQDLELLRGEKAELLSEIQKINGQHSNTIKKLEEIEAEMITLTTQKELERCEIAEKLETfKSK 876
Cdd:COG4913 397 ---EEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLDEAELPFVGELIEV-RPE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 877 EAD----IKEALHCAQLRL---HAYDKLVCEY---ERLKGCLsDSNKLSENLQK-KVERLHAEQLALQegISGRDSEIKQ 945
Cdd:COG4913 473 EERwrgaIERVLGGFALTLlvpPEHYAAALRWvnrLHLRGRL-VYERVRTGLPDpERPRLDPDSLAGK--LDFKPHPFRA 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 946 -LRSELKD---------------------------------AIDENKTVREAKV-GLENSLKAvqENMSAQEGQFKQKIA 990
Cdd:COG4913 550 wLEAELGRrfdyvcvdspeelrrhpraitragqvkgngtrhEKDDRRRIRSRYVlGFDNRAKL--AALEAELAELEEELA 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 991 DIKGSVDELQIKLKSLQEVRDHLEsRNEELKRKLKDAQELQNMV-DKERKLnSSLREDFDKLEQtkldLEEQLRAKKVEI 1069
Cdd:COG4913 628 EAEERLEALEAELDALQERREALQ-RLAEYSWDEIDVASAEREIaELEAEL-ERLDASSDDLAA----LEEQLEELEAEL 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1070 DRRSKELGEVTKDCENIRSDLEAQTNDFLKERETLNLTISDLRLHNEQLLEtskNYLSDITAANNLNlEMKKNLHDLTKE 1149
Cdd:COG4913 702 EELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLE---ERFAAALGDAVER-ELRENLEERIDA 777
|
570
....*....|.
gi 665407636 1150 CKSLRSDLQSK 1160
Cdd:COG4913 778 LRARLNRAEEE 788
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
677-884 |
6.69e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.77 E-value: 6.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 677 LDVIKRSLQEKITQAEK---ERNELAVRHKAELEKIRETLKEKESSYKEKLRQAEEErdkeisrlevmrntIAELHKTNS 753
Cdd:PHA02562 186 LDMKIDHIQQQIKTYNKnieEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDE--------------LLNLVMDIE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 754 DREVELEGVKMEKCQLK---KLYDKSMLELEQLQ----CTADQKSSDLLPGSSNENIDDLQKKCDQY---VQDLEL---- 819
Cdd:PHA02562 252 DPSAALNKLNTAAAKIKskiEQFQKVIKMYEKGGvcptCTQQISEGPDRITKIKDKLKELQHSLEKLdtaIDELEEimde 331
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 665407636 820 ---LRGEKAELLSEIQKINGQHSNTIKKLEEIEAEMITLTTqkelERCEIAEKLETFKSKEADIKEAL 884
Cdd:PHA02562 332 fneQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQA----EFVDNAEELAKLQDELDKIVKTK 395
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
449-1189 |
7.95e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 40.83 E-value: 7.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 449 LNQIETIKNQNAKTKILCEELQTKDT-VQTANKQESQEVLTLKTSLAHLKSKVCELQKKLEKQSEDEKISELQSDIGEIS 527
Cdd:COG5022 816 LACIIKLQKTIKREKKLRETEEVEFSlKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSIS 895
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 528 ecclsmelKLADIVNwqaeelrpldQLQESGVELqhhSTTAEESLNVEKPIQEQtertLTTEYERRIE--QLEESLQRAQ 605
Cdd:COG5022 896 --------SLKLVNL----------ELESEIIEL---KKSLSSDLIENLEFKTE----LIARLKKLLNniDLEEGPSIEY 950
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 606 EELSILEKRKTDEN--KSLQLEYMAKIETSENenrskfraycldLKETQKRYEEQLQQTNEKLASVTTQcqvhldviKRS 683
Cdd:COG5022 951 VKLPELNKLHEVESklKETSEEYEDLLKKSTI------------LVREGNKANSELKNFKKELAELSKQ--------YGA 1010
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 684 LQEKITQAEKERNELAVRHKAElekiretlKEKESSYKEKLRQAEEERDKEISRLEVMRNTiAELHKTNSDREVELEGVK 763
Cdd:COG5022 1011 LQESTKQLKELPVEVAELQSAS--------KIISSESTELSILKPLQKLKGLLLLENNQLQ-ARYKALKLRRENSLLDDK 1081
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 764 MEKCQLKKLYDKSMLELEQLQCTADQKssdLLPGSSNENIDDLQKKCDQYVQDLELLRgekaELLSEIQKINGQHSNTIK 843
Cdd:COG5022 1082 QLYQLESTENLLKTINVKDLEVTNRNL---VKPANVLQFIVAQMIKLNLLQEISKFLS----QLVNTLEPVFQKLSVLQL 1154
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 844 KLEEIEAEMITLTTQKELERCEIAEKlETFKSKEADIKEALHCAQLRLhAYDKLVCEYERLKGCLSDSNKLsENLQKKVE 923
Cdd:COG5022 1155 ELDGLFWEANLEALPSPPPFAALSEK-RLYQSALYDEKSKLSSSEVND-LKNELIALFSKIFSGWPRGDKL-KKLISEGW 1231
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 924 RLHAEQLALQEGISGRDSEIKQlrselkdAIDENKTVREAKVGLENSLKAVQENMSAQEGQFKQKIADIK-GSVDELQIK 1002
Cdd:COG5022 1232 VPTEYSTSLKGFNNLNKKFDTP-------ASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINvGLFNALRTK 1304
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1003 LKSLqevrdhlesrneELKRklkdaqelqnmvDKERKLNSSLREDFDKlEQTKLDLEEQLRakkvEIDRRSKELGEVTKD 1082
Cdd:COG5022 1305 ASSL------------RWKS------------ATEVNYNSEELDDWCR-EFEISDVDEELE----ELIQAVKVLQLLKDD 1355
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665407636 1083 CENIRSDLEAQTNDFLKERETLNLTISDLRLHNEQLLETSKNYLSDIT-AANNLNLEMKKNLHDLTKECKSLRSDLQSKE 1161
Cdd:COG5022 1356 LNKLDELLDACYSLNPAEIQNLKSRYDPADKENNLPKEILKKIEALLIkQELQLSLEGKDETEVHLSEIFSEEKSLISLD 1435
|
730 740
....*....|....*....|....*...
gi 665407636 1162 EYFQTQKQLLDETISNLKEENRKMEEKL 1189
Cdd:COG5022 1436 RNSIYKEEVLSSLSALLTKEKIALLDRK 1463
|
|
| |
