NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|831360268|ref|NP_001296737|]
View 

cytochrome c oxidase assembly protein COX16 homolog, mitochondrial isoform 2 [Mus musculus]

Protein Classification

cytochrome c oxidase assembly protein COX16( domain architecture ID 10624380)

cytochrome c oxidase assembly protein COX16 is required for the assembly of the mitochondrial respiratory chain complex IV (CIV), also known as cytochrome c oxidase

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
COX16 pfam14138
Cytochrome c oxidase assembly protein COX16; This family represents homologs of COX16 which ...
 16-68 2.85e-16

Cytochrome c oxidase assembly protein COX16; This family represents homologs of COX16 which has been shown to be involved in assembly of cytochrome oxidase. Protein in this family are typically between 106 and 134 amino acids in length.


:

Pssm-ID: 464091  Cd Length: 79  Bit Score: 65.99  E-value: 2.85e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 831360268  16 LRYGVPMLLLVVGGSFGLREFSQIRYDAVTIKiDPELEKKLKVN------KITLESEYE 68
Cdd:pfam14138  1 LRFGLPFLLLIVGGSFGLSEFTQVRYERRDRK-VKELSEEEELGlkknrrKVDLEEEYY 58
 
Name Accession Description Interval E-value
COX16 pfam14138
Cytochrome c oxidase assembly protein COX16; This family represents homologs of COX16 which ...
 16-68 2.85e-16

Cytochrome c oxidase assembly protein COX16; This family represents homologs of COX16 which has been shown to be involved in assembly of cytochrome oxidase. Protein in this family are typically between 106 and 134 amino acids in length.


Pssm-ID: 464091  Cd Length: 79  Bit Score: 65.99  E-value: 2.85e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 831360268  16 LRYGVPMLLLVVGGSFGLREFSQIRYDAVTIKiDPELEKKLKVN------KITLESEYE 68
Cdd:pfam14138  1 LRFGLPFLLLIVGGSFGLSEFTQVRYERRDRK-VKELSEEEELGlkknrrKVDLEEEYY 58
 
Name Accession Description Interval E-value
COX16 pfam14138
Cytochrome c oxidase assembly protein COX16; This family represents homologs of COX16 which ...
 16-68 2.85e-16

Cytochrome c oxidase assembly protein COX16; This family represents homologs of COX16 which has been shown to be involved in assembly of cytochrome oxidase. Protein in this family are typically between 106 and 134 amino acids in length.


Pssm-ID: 464091  Cd Length: 79  Bit Score: 65.99  E-value: 2.85e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 831360268  16 LRYGVPMLLLVVGGSFGLREFSQIRYDAVTIKiDPELEKKLKVN------KITLESEYE 68
Cdd:pfam14138  1 LRFGLPFLLLIVGGSFGLSEFTQVRYERRDRK-VKELSEEEELGlkknrrKVDLEEEYY 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH