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Conserved domains on  [gi|960139588|ref|NP_001304677|]
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matrilin-2 isoform c precursor [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
 54-276 8.94e-134

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


:

Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 399.45  E-value: 8.94e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  54 KRADLVFIIDSSRSVNTHDYAKVKEFIVDILQFLDIGPDVTRVGLLQYGSTVKNEFSLKTFKRKSEVERAVKRMRHLSTG 133
Cdd:cd01475    1 GPTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAVRRMEYLETG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 134 TMTGLAIQYALNIAFSEAEGARPLRENVPRVIMIVTDGRPQDSVAEVAAKARDTGILIFAIGVGQVDFNTLKSIGSEPHE 213
Cdd:cd01475   81 TMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGRADEEELREIASEPLA 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 960139588 214 DHVFLVANFSQIETLTSVFQKKLC-TAHMCSTLEHNCAHFCINIPGSYVCRCKQGYILNSDQTT 276
Cdd:cd01475  161 DHVFYVEDFSTIEELTKKFQGKICvVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNKT 224
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
 611-851 4.06e-125

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


:

Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 377.11  E-value: 4.06e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 611 GPIDLVFVIDGSKSLGEENFEVVKQFVTGIIDSLTISPKAARVGLLQYSTQVHTEFTLRNFNSAKDMKKAVAHMKYMGKG 690
Cdd:cd01475    1 GPTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAVRRMEYLETG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 691 SMTGLALKHMFERSFTQGEGARPLSTRVPRAAIVFTDGRAQDDVSEWASKAKANGITMYAVGVGKAIEEELQEIASEPTN 770
Cdd:cd01475   81 TMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGRADEEELREIASEPLA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 771 KHLFYAEDFSTMDEISEKLKKGICEaledsdgrQDSPAGELPKTVQQPTESEPVTIniqdllscsNFAVQHRYLFEEDNL 850
Cdd:cd01475  161 DHVFYVEDFSTIEELTKKFQGKICV--------VPDLCATLSHVCQQVCISTPGSY---------LCACTEGYALLEDNK 223


                 .
gi 960139588 851 L 851
Cdd:cd01475  224 T 224
Matrilin_ccoil pfam10393
Trimeric coiled-coil oligomerization domain of matrilin; This short domain is a coiled coil ...
 870-912 6.33e-16

Trimeric coiled-coil oligomerization domain of matrilin; This short domain is a coiled coil structure and has a single cysteine residue at the start which is likely to form a di-sulfide bridge with a corresponding cysteine in an upstream EGF (pfam00008) domain thereby spanning a VWA (pfam00092) domain. All three domains can be associated together as in the cartilage matrix protein matrilin, where this domain is likely to be responsible for oligomerization.


:

Pssm-ID: 463070  Cd Length: 43  Bit Score: 72.00  E-value: 6.33e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 960139588  870 EKHDQCKCENLIMFQNLANEEVRKLTQRLEEMTQRMEALENRL 912
Cdd:pfam10393   1 VEEDPCKCEAIVAFQTKVESEIQALTTKLEEVTKRIEALENRL 43
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 324-359 7.01e-08

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 49.16  E-value: 7.01e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 960139588  324 CASENHGCEHECVNADGSYLCQCHEGFALNPDKKTC 359
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
vWFA super family cl00057
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
 479-522 9.73e-08

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.


The actual alignment was detected with superfamily member cd01475:

Pssm-ID: 469594 [Multi-domain]  Cd Length: 224  Bit Score: 53.54  E-value: 9.73e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 960139588 479 GKTCAKLDSCALGDHGCEHSCVSSEDSFVCQCFEGYILREDGKT 522
Cdd:cd01475  181 GKICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNKT 224
vWFA super family cl00057
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
 520-562 2.35e-07

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.


The actual alignment was detected with superfamily member cd01475:

Pssm-ID: 469594 [Multi-domain]  Cd Length: 224  Bit Score: 52.77  E-value: 2.35e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 960139588 520 GKTCRRKDVCQAIDHGCEHICVNSDDSYTCECLEGFRLAEDGK 562
Cdd:cd01475  181 GKICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNK 223
vWFA super family cl00057
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
 561-603 3.95e-07

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.


The actual alignment was detected with superfamily member cd01475:

Pssm-ID: 469594 [Multi-domain]  Cd Length: 224  Bit Score: 52.00  E-value: 3.95e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 960139588 561 GKRCRRKDVCKSTHHGCEHICVNNGNSYICKCSEGFVLAEDGR 603
Cdd:cd01475  181 GKICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNK 223
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 365-400 4.73e-07

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 46.85  E-value: 4.73e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 960139588  365 CALNKPGCEHECVNMEESYYCRCHRGYTLDPNGKTC 400
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 283-318 1.38e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 45.70  E-value: 1.38e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 960139588  283 CAMEDHNCEQLCVNVPGSFVCQCYSGYALAEDGKRC 318
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 406-441 6.06e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 43.77  E-value: 6.06e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 960139588  406 CAQQDHGCEQLCLNTEDSFVCQCSEGFLINEDLKTC 441
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 447-482 5.35e-05

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 41.07  E-value: 5.35e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 960139588  447 CLLSDHGCEYSCVNMDRSFACQCPEGHVLRSDGKTC 482
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
 
Name Accession Description Interval E-value
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
 54-276 8.94e-134

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 399.45  E-value: 8.94e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  54 KRADLVFIIDSSRSVNTHDYAKVKEFIVDILQFLDIGPDVTRVGLLQYGSTVKNEFSLKTFKRKSEVERAVKRMRHLSTG 133
Cdd:cd01475    1 GPTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAVRRMEYLETG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 134 TMTGLAIQYALNIAFSEAEGARPLRENVPRVIMIVTDGRPQDSVAEVAAKARDTGILIFAIGVGQVDFNTLKSIGSEPHE 213
Cdd:cd01475   81 TMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGRADEEELREIASEPLA 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 960139588 214 DHVFLVANFSQIETLTSVFQKKLC-TAHMCSTLEHNCAHFCINIPGSYVCRCKQGYILNSDQTT 276
Cdd:cd01475  161 DHVFYVEDFSTIEELTKKFQGKICvVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNKT 224
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
 611-851 4.06e-125

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 377.11  E-value: 4.06e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 611 GPIDLVFVIDGSKSLGEENFEVVKQFVTGIIDSLTISPKAARVGLLQYSTQVHTEFTLRNFNSAKDMKKAVAHMKYMGKG 690
Cdd:cd01475    1 GPTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAVRRMEYLETG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 691 SMTGLALKHMFERSFTQGEGARPLSTRVPRAAIVFTDGRAQDDVSEWASKAKANGITMYAVGVGKAIEEELQEIASEPTN 770
Cdd:cd01475   81 TMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGRADEEELREIASEPLA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 771 KHLFYAEDFSTMDEISEKLKKGICEaledsdgrQDSPAGELPKTVQQPTESEPVTIniqdllscsNFAVQHRYLFEEDNL 850
Cdd:cd01475  161 DHVFYVEDFSTIEELTKKFQGKICV--------VPDLCATLSHVCQQVCISTPGSY---------LCACTEGYALLEDNK 223


                 .
gi 960139588 851 L 851
Cdd:cd01475  224 T 224
VWA pfam00092
von Willebrand factor type A domain;
57-230 1.03e-60

von Willebrand factor type A domain;


Pssm-ID: 459670 [Multi-domain]  Cd Length: 174  Bit Score: 204.05  E-value: 1.03e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588   57 DLVFIIDSSRSVNTHDYAKVKEFIVDILQFLDIGPDVTRVGLLQYGSTVKNEFSLKTFKRKSEVERAVKRMRHLSTGTM- 135
Cdd:pfam00092   1 DIVFLLDGSGSIGGDNFEKVKEFLKKLVESLDIGPDGTRVGLVQYSSDVRTEFPLNDYSSKEELLSAVDNLRYLGGGTTn 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  136 TGLAIQYALNIAFSEAEGARPlreNVPRVIMIVTDGRPQD-SVAEVAAKARDTGILIFAIGVGQVDFNTLKSIGSEPHED 214
Cdd:pfam00092  81 TGKALKYALENLFSSAAGARP---GAPKVVVLLTDGRSQDgDPEEVARELKSAGVTVFAVGVGNADDEELRKIASEPGEG 157

                         170
                  ....*....|....*.
gi 960139588  215 HVFLVANFSQIETLTS 230
Cdd:pfam00092 158 HVFTVSDFEALEDLQD 173
VWA pfam00092
von Willebrand factor type A domain;
614-788 4.06e-60

von Willebrand factor type A domain;


Pssm-ID: 459670 [Multi-domain]  Cd Length: 174  Bit Score: 202.12  E-value: 4.06e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  614 DLVFVIDGSKSLGEENFEVVKQFVTGIIDSLTISPKAARVGLLQYSTQVHTEFTLRNFNSAKDMKKAVAHMKYMGKGSM- 692
Cdd:pfam00092   1 DIVFLLDGSGSIGGDNFEKVKEFLKKLVESLDIGPDGTRVGLVQYSSDVRTEFPLNDYSSKEELLSAVDNLRYLGGGTTn 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  693 TGLALKHMFERSFTQGEGARPlstRVPRAAIVFTDGRAQD-DVSEWASKAKANGITMYAVGVGKAIEEELQEIASEPTNK 771
Cdd:pfam00092  81 TGKALKYALENLFSSAAGARP---GAPKVVVLLTDGRSQDgDPEEVARELKSAGVTVFAVGVGNADDEELRKIASEPGEG 157

                         170
                  ....*....|....*..
gi 960139588  772 HLFYAEDFSTMDEISEK 788
Cdd:pfam00092 158 HVFTVSDFEALEDLQDQ 174
VWA smart00327
von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins ...
 614-786 1.03e-45

von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.


Pssm-ID: 214621 [Multi-domain]  Cd Length: 175  Bit Score: 161.85  E-value: 1.03e-45
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588   614 DLVFVIDGSKSLGEENFEVVKQFVTGIIDSLTISPKAARVGLLQYSTQVHTEFTLRNFNSAKDMKKAVAHMKY-MGKGSM 692
Cdd:smart00327   1 DVVFLLDGSGSMGGNRFELAKEFVLKLVEQLDIGPDGDRVGLVTFSDDARVLFPLNDSRSKDALLEALASLSYkLGGGTN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588   693 TGLALKHMFERSFTQGEGARPlstRVPRAAIVFTDGRAQD---DVSEWASKAKANGITMYAVGVGKAI-EEELQEIASEP 768
Cdd:smart00327  81 LGAALQYALENLFSKSAGSRR---GAPKVVILITDGESNDgpkDLLKAAKELKRSGVKVFVVGVGNDVdEEELKKLASAP 157

                          170
                   ....*....|....*...
gi 960139588   769 TNKHLFYAEDFSTMDEIS 786
Cdd:smart00327 158 GGVYVFLPELLDLLIDLL 175
VWA smart00327
von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins ...
 57-228 2.49e-45

von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.


Pssm-ID: 214621 [Multi-domain]  Cd Length: 175  Bit Score: 160.70  E-value: 2.49e-45
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588    57 DLVFIIDSSRSVNTHDYAKVKEFIVDILQFLDIGPDVTRVGLLQYGSTVKNEFSLKTFKRKSEVERAVKRMR-HLSTGTM 135
Cdd:smart00327   1 DVVFLLDGSGSMGGNRFELAKEFVLKLVEQLDIGPDGDRVGLVTFSDDARVLFPLNDSRSKDALLEALASLSyKLGGGTN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588   136 TGLAIQYALNIAFSEAEGARPlreNVPRVIMIVTDGRPQDS---VAEVAAKARDTGILIFAIGVGQ-VDFNTLKSIGSEP 211
Cdd:smart00327  81 LGAALQYALENLFSKSAGSRR---GAPKVVILITDGESNDGpkdLLKAAKELKRSGVKVFVVGVGNdVDEEELKKLASAP 157

                          170
                   ....*....|....*..
gi 960139588   212 HEDHVFLVANFSQIETL 228
Cdd:smart00327 158 GGVYVFLPELLDLLIDL 174
ChlD COG1240
vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and ...
 612-785 1.64e-16

vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and metabolism];


Pssm-ID: 440853 [Multi-domain]  Cd Length: 262  Bit Score: 80.37  E-value: 1.64e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 612 PIDLVFVIDGSKSLGEEN-FEVVKQFVTGIIDSLtisPKAARVGLLQYSTQVHT--EFTlrnfNSAKDMKKAVAHMKYMG 688
Cdd:COG1240   92 GRDVVLVVDASGSMAAENrLEAAKGALLDFLDDY---RPRDRVGLVAFGGEAEVllPLT----RDREALKRALDELPPGG 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 689 KGSMtGLALKHMFERsftqgegARPLSTRVPRAAIVFTDGRA---QDDVSEWASKAKANGITMYAVGVGKAI--EEELQE 763
Cdd:COG1240  165 GTPL-GDALALALEL-------LKRADPARRKVIVLLTDGRDnagRIDPLEAAELAAAAGIRIYTIGVGTEAvdEGLLRE 236

                        170       180
                 ....*....|....*....|..
gi 960139588 764 IASEpTNKHLFYAEDFSTMDEI 785
Cdd:COG1240  237 IAEA-TGGRYFRADDLSELAAI 257
Matrilin_ccoil pfam10393
Trimeric coiled-coil oligomerization domain of matrilin; This short domain is a coiled coil ...
 870-912 6.33e-16

Trimeric coiled-coil oligomerization domain of matrilin; This short domain is a coiled coil structure and has a single cysteine residue at the start which is likely to form a di-sulfide bridge with a corresponding cysteine in an upstream EGF (pfam00008) domain thereby spanning a VWA (pfam00092) domain. All three domains can be associated together as in the cartilage matrix protein matrilin, where this domain is likely to be responsible for oligomerization.


Pssm-ID: 463070  Cd Length: 43  Bit Score: 72.00  E-value: 6.33e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 960139588  870 EKHDQCKCENLIMFQNLANEEVRKLTQRLEEMTQRMEALENRL 912
Cdd:pfam10393   1 VEEDPCKCEAIVAFQTKVESEIQALTTKLEEVTKRIEALENRL 43
ChlD COG1240
vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and ...
 54-207 1.94e-15

vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and metabolism];


Pssm-ID: 440853 [Multi-domain]  Cd Length: 262  Bit Score: 77.29  E-value: 1.94e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  54 KRADLVFIIDSSRSVNTHD-YAKVKEFIvdiLQFLDIGPDVTRVGLLQYGSTVKNEFSLkTfkrkSEVERAVKRMRHLST 132
Cdd:COG1240   91 RGRDVVLVVDASGSMAAENrLEAAKGAL---LDFLDDYRPRDRVGLVAFGGEAEVLLPL-T----RDREALKRALDELPP 162

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 133 GTMT--GLAIQYALNIAfseaegaRPLRENVPRVIMIVTDGRPQDSVA---EVAAKARDTGILIFAIGVG--QVDFNTLK 205
Cdd:COG1240  163 GGGTplGDALALALELL-------KRADPARRKVIVLLTDGRDNAGRIdplEAAELAAAAGIRIYTIGVGteAVDEGLLR 235


                 ..
gi 960139588 206 SI 207
Cdd:COG1240  236 EI 237
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 324-359 7.01e-08

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 49.16  E-value: 7.01e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 960139588  324 CASENHGCEHECVNADGSYLCQCHEGFALNPDKKTC 359
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
 479-522 9.73e-08

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 53.54  E-value: 9.73e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 960139588 479 GKTCAKLDSCALGDHGCEHSCVSSEDSFVCQCFEGYILREDGKT 522
Cdd:cd01475  181 GKICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNKT 224
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
 520-562 2.35e-07

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 52.77  E-value: 2.35e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 960139588 520 GKTCRRKDVCQAIDHGCEHICVNSDDSYTCECLEGFRLAEDGK 562
Cdd:cd01475  181 GKICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNK 223
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 529-564 2.36e-07

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 47.62  E-value: 2.36e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 960139588  529 CQAIDHGCEHICVNSDDSYTCECLEGFRLAEDGKRC 564
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
 561-603 3.95e-07

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 52.00  E-value: 3.95e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 960139588 561 GKRCRRKDVCKSTHHGCEHICVNNGNSYICKCSEGFVLAEDGR 603
Cdd:cd01475  181 GKICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNK 223
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 365-400 4.73e-07

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 46.85  E-value: 4.73e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 960139588  365 CALNKPGCEHECVNMEESYYCRCHRGYTLDPNGKTC 400
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 570-605 5.02e-07

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 46.85  E-value: 5.02e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 960139588  570 CKSTHHGCEHICVNNGNSYICKCSEGFVLAEDGRRC 605
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 283-318 1.38e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 45.70  E-value: 1.38e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 960139588  283 CAMEDHNCEQLCVNVPGSFVCQCYSGYALAEDGKRC 318
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 488-523 2.93e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 44.54  E-value: 2.93e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 960139588  488 CALGDHGCEHSCVSSEDSFVCQCFEGYILREDGKTC 523
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 48-238 3.24e-06

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 50.73  E-value: 3.24e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  48 ESSCeNKRADLVFIIDSSRSVNTHDY-AKVKEFIVDILQFLDIGPDVTRVGLLQYGSTVKNEFSLKTFKRKSEvERAVKR 126
Cdd:PTZ00441  36 EEVC-NEEVDLYLLVDGSGSIGYHNWiTHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTTELIRLGSGASKDK-EQALII 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 127 MRHL-STGTMTGlaiQYALNIAFSEAE---GARPLRENVPRVIMIVTDGRP---QDSVaEVAAKARDTGILIFAIGVGQ- 198
Cdd:PTZ00441 114 VKSLrKTYLPYG---KTNMTDALLEVRkhlNDRVNRENAIQLVILMTDGIPnskYRAL-EESRKLKDRNVKLAVIGIGQg 189

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 960139588 199 --VDFNTLkSIGSEPHED--HVFLVANFSQIETLTSVFQKKLCT 238
Cdd:PTZ00441 190 inHQFNRL-LAGCRPREGkcKFYSDADWEEAKNLIKPFIAKVCT 232
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 406-441 6.06e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 43.77  E-value: 6.06e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 960139588  406 CAQQDHGCEQLCLNTEDSFVCQCSEGFLINEDLKTC 441
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 447-482 5.35e-05

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 41.07  E-value: 5.35e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 960139588  447 CLLSDHGCEYSCVNMDRSFACQCPEGHVLRSDGKTC 482
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
EGF_CA smart00179
Calcium-binding EGF-like domain;
281-319 4.81e-03

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 35.69  E-value: 4.81e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 960139588   281 DLCAmEDHNCEQ--LCVNVPGSFVCQCYSGYalaEDGKRCV 319
Cdd:smart00179   3 DECA-SGNPCQNggTCVNTVGSYRCECPPGY---TDGRNCE 39
EGF_CA smart00179
Calcium-binding EGF-like domain;
362-400 5.26e-03

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 35.30  E-value: 5.26e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 960139588   362 INYCALNKPgCEH--ECVNMEESYYCRCHRGYTldpNGKTC 400
Cdd:smart00179   2 IDECASGNP-CQNggTCVNTVGSYRCECPPGYT---DGRNC 38
EGF_CA smart00179
Calcium-binding EGF-like domain;
321-360 8.44e-03

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 34.92  E-value: 8.44e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 960139588   321 VDYCASeNHGCEH--ECVNADGSYLCQCHEGFAlnpDKKTCT 360
Cdd:smart00179   2 IDECAS-GNPCQNggTCVNTVGSYRCECPPGYT---DGRNCE 39
 
Name Accession Description Interval E-value
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
 54-276 8.94e-134

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 399.45  E-value: 8.94e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  54 KRADLVFIIDSSRSVNTHDYAKVKEFIVDILQFLDIGPDVTRVGLLQYGSTVKNEFSLKTFKRKSEVERAVKRMRHLSTG 133
Cdd:cd01475    1 GPTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAVRRMEYLETG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 134 TMTGLAIQYALNIAFSEAEGARPLRENVPRVIMIVTDGRPQDSVAEVAAKARDTGILIFAIGVGQVDFNTLKSIGSEPHE 213
Cdd:cd01475   81 TMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGRADEEELREIASEPLA 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 960139588 214 DHVFLVANFSQIETLTSVFQKKLC-TAHMCSTLEHNCAHFCINIPGSYVCRCKQGYILNSDQTT 276
Cdd:cd01475  161 DHVFYVEDFSTIEELTKKFQGKICvVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNKT 224
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
 611-851 4.06e-125

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 377.11  E-value: 4.06e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 611 GPIDLVFVIDGSKSLGEENFEVVKQFVTGIIDSLTISPKAARVGLLQYSTQVHTEFTLRNFNSAKDMKKAVAHMKYMGKG 690
Cdd:cd01475    1 GPTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAVRRMEYLETG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 691 SMTGLALKHMFERSFTQGEGARPLSTRVPRAAIVFTDGRAQDDVSEWASKAKANGITMYAVGVGKAIEEELQEIASEPTN 770
Cdd:cd01475   81 TMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGRADEEELREIASEPLA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 771 KHLFYAEDFSTMDEISEKLKKGICEaledsdgrQDSPAGELPKTVQQPTESEPVTIniqdllscsNFAVQHRYLFEEDNL 850
Cdd:cd01475  161 DHVFYVEDFSTIEELTKKFQGKICV--------VPDLCATLSHVCQQVCISTPGSY---------LCACTEGYALLEDNK 223


                 .
gi 960139588 851 L 851
Cdd:cd01475  224 T 224
VWA pfam00092
von Willebrand factor type A domain;
57-230 1.03e-60

von Willebrand factor type A domain;


Pssm-ID: 459670 [Multi-domain]  Cd Length: 174  Bit Score: 204.05  E-value: 1.03e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588   57 DLVFIIDSSRSVNTHDYAKVKEFIVDILQFLDIGPDVTRVGLLQYGSTVKNEFSLKTFKRKSEVERAVKRMRHLSTGTM- 135
Cdd:pfam00092   1 DIVFLLDGSGSIGGDNFEKVKEFLKKLVESLDIGPDGTRVGLVQYSSDVRTEFPLNDYSSKEELLSAVDNLRYLGGGTTn 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  136 TGLAIQYALNIAFSEAEGARPlreNVPRVIMIVTDGRPQD-SVAEVAAKARDTGILIFAIGVGQVDFNTLKSIGSEPHED 214
Cdd:pfam00092  81 TGKALKYALENLFSSAAGARP---GAPKVVVLLTDGRSQDgDPEEVARELKSAGVTVFAVGVGNADDEELRKIASEPGEG 157

                         170
                  ....*....|....*.
gi 960139588  215 HVFLVANFSQIETLTS 230
Cdd:pfam00092 158 HVFTVSDFEALEDLQD 173
VWA pfam00092
von Willebrand factor type A domain;
614-788 4.06e-60

von Willebrand factor type A domain;


Pssm-ID: 459670 [Multi-domain]  Cd Length: 174  Bit Score: 202.12  E-value: 4.06e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  614 DLVFVIDGSKSLGEENFEVVKQFVTGIIDSLTISPKAARVGLLQYSTQVHTEFTLRNFNSAKDMKKAVAHMKYMGKGSM- 692
Cdd:pfam00092   1 DIVFLLDGSGSIGGDNFEKVKEFLKKLVESLDIGPDGTRVGLVQYSSDVRTEFPLNDYSSKEELLSAVDNLRYLGGGTTn 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  693 TGLALKHMFERSFTQGEGARPlstRVPRAAIVFTDGRAQD-DVSEWASKAKANGITMYAVGVGKAIEEELQEIASEPTNK 771
Cdd:pfam00092  81 TGKALKYALENLFSSAAGARP---GAPKVVVLLTDGRSQDgDPEEVARELKSAGVTVFAVGVGNADDEELRKIASEPGEG 157

                         170
                  ....*....|....*..
gi 960139588  772 HLFYAEDFSTMDEISEK 788
Cdd:pfam00092 158 HVFTVSDFEALEDLQDQ 174
vWA_collagen_alphaI-XII-like cd01482
Collagen: The extracellular matrix represents a complex alloy of variable members of diverse ...
 614-779 6.97e-57

Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.


Pssm-ID: 238759 [Multi-domain]  Cd Length: 164  Bit Score: 192.89  E-value: 6.97e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 614 DLVFVIDGSKSLGEENFEVVKQFVTGIIDSLTISPKAARVGLLQYSTQVHTEFTLRNFNSAKDMKKAVAHMKYMGKGSMT 693
Cdd:cd01482    2 DIVFLVDGSWSIGRSNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTEFDLNAYTSKEDVLAAIKNLPYKGGNTRT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 694 GLALKHMFERSFTQGEGARPlstRVPRAAIVFTDGRAQDDVSEWASKAKANGITMYAVGVGKAIEEELQEIASEPTNKHL 773
Cdd:cd01482   82 GKALTHVREKNFTPDAGARP---GVPKVVILITDGKSQDDVELPARVLRNLGVNVFAVGVKDADESELKMIASKPSETHV 158


                 ....*.
gi 960139588 774 FYAEDF 779
Cdd:cd01482  159 FNVADF 164
vWA_collagen cd01472
von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This ...
 613-779 1.99e-55

von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.


Pssm-ID: 238749 [Multi-domain]  Cd Length: 164  Bit Score: 188.98  E-value: 1.99e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 613 IDLVFVIDGSKSLGEENFEVVKQFVTGIIDSLTISPKAARVGLLQYSTQVHTEFTLRNFNSAKDMKKAVAHMKYMGKGSM 692
Cdd:cd01472    1 ADIVFLVDGSESIGLSNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRTEFYLNTYRSKDDVLEAVKNLRYIGGGTN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 693 TGLALKHMFERSFTQGEGARPlstRVPRAAIVFTDGRAQDDVSEWASKAKANGITMYAVGVGKAIEEELQEIASEPTNKH 772
Cdd:cd01472   81 TGKALKYVRENLFTEASGSRE---GVPKVLVVITDGKSQDDVEEPAVELKQAGIEVFAVGVKNADEEELKQIASDPKELY 157


                 ....*..
gi 960139588 773 LFYAEDF 779
Cdd:cd01472  158 VFNVADF 164
vWFA_subfamily_ECM cd01450
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
 56-217 5.98e-55

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains


Pssm-ID: 238727 [Multi-domain]  Cd Length: 161  Bit Score: 187.50  E-value: 5.98e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  56 ADLVFIIDSSRSVNTHDYAKVKEFIVDILQFLDIGPDVTRVGLLQYGSTVKNEFSLKTFKRKSEVERAVKRMRHL-STGT 134
Cdd:cd01450    1 LDIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEFSLNDYKSKDDLLKAVKNLKYLgGGGT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 135 MTGLAIQYALNIAFSEaegaRPLRENVPRVIMIVTDGRPQD--SVAEVAAKARDTGILIFAIGVGQVDFNTLKSIGSEPH 212
Cdd:cd01450   81 NTGKALQYALEQLFSE----SNARENVPKVIIVLTDGRSDDggDPKEAAAKLKDEGIKVFVVGVGPADEEELREIASCPS 156


                 ....*
gi 960139588 213 EDHVF 217
Cdd:cd01450  157 ERHVF 161
vWFA_subfamily_ECM cd01450
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
 613-774 1.27e-54

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains


Pssm-ID: 238727 [Multi-domain]  Cd Length: 161  Bit Score: 186.34  E-value: 1.27e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 613 IDLVFVIDGSKSLGEENFEVVKQFVTGIIDSLTISPKAARVGLLQYSTQVHTEFTLRNFNSAKDMKKAVAHMKYM-GKGS 691
Cdd:cd01450    1 LDIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEFSLNDYKSKDDLLKAVKNLKYLgGGGT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 692 MTGLALKHMFERSFTQGeGARPlstRVPRAAIVFTDGRAQD--DVSEWASKAKANGITMYAVGVGKAIEEELQEIASEPT 769
Cdd:cd01450   81 NTGKALQYALEQLFSES-NARE---NVPKVIIVLTDGRSDDggDPKEAAAKLKDEGIKVFVVGVGPADEEELREIASCPS 156


                 ....*
gi 960139588 770 NKHLF 774
Cdd:cd01450  157 ERHVF 161
vWA_collagen cd01472
von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This ...
 56-222 2.18e-52

von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.


Pssm-ID: 238749 [Multi-domain]  Cd Length: 164  Bit Score: 180.50  E-value: 2.18e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  56 ADLVFIIDSSRSVNTHDYAKVKEFIVDILQFLDIGPDVTRVGLLQYGSTVKNEFSLKTFKRKSEVERAVKRMRHLSTGTM 135
Cdd:cd01472    1 ADIVFLVDGSESIGLSNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRTEFYLNTYRSKDDVLEAVKNLRYIGGGTN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 136 TGLAIQYALNIAFSEAEGArplRENVPRVIMIVTDGRPQDSVAEVAAKARDTGILIFAIGVGQVDFNTLKSIGSEPHEDH 215
Cdd:cd01472   81 TGKALKYVRENLFTEASGS---REGVPKVLVVITDGKSQDDVEEPAVELKQAGIEVFAVGVKNADEEELKQIASDPKELY 157


                 ....*..
gi 960139588 216 VFLVANF 222
Cdd:cd01472  158 VFNVADF 164
vWA_collagen_alphaI-XII-like cd01482
Collagen: The extracellular matrix represents a complex alloy of variable members of diverse ...
 56-222 5.68e-50

Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.


Pssm-ID: 238759 [Multi-domain]  Cd Length: 164  Bit Score: 173.63  E-value: 5.68e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  56 ADLVFIIDSSRSVNTHDYAKVKEFIVDILQFLDIGPDVTRVGLLQYGSTVKNEFSLKTFKRKSEVERAVKRMRHLSTGTM 135
Cdd:cd01482    1 ADIVFLVDGSWSIGRSNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTEFDLNAYTSKEDVLAAIKNLPYKGGNTR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 136 TGLAIQYALNIAFSEAEGARPlreNVPRVIMIVTDGRPQDSVAEVAAKARDTGILIFAIGVGQVDFNTLKSIGSEPHEDH 215
Cdd:cd01482   81 TGKALTHVREKNFTPDAGARP---GVPKVVILITDGKSQDDVELPARVLRNLGVNVFAVGVKDADESELKMIASKPSETH 157


                 ....*..
gi 960139588 216 VFLVANF 222
Cdd:cd01482  158 VFNVADF 164
VWA smart00327
von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins ...
 614-786 1.03e-45

von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.


Pssm-ID: 214621 [Multi-domain]  Cd Length: 175  Bit Score: 161.85  E-value: 1.03e-45
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588   614 DLVFVIDGSKSLGEENFEVVKQFVTGIIDSLTISPKAARVGLLQYSTQVHTEFTLRNFNSAKDMKKAVAHMKY-MGKGSM 692
Cdd:smart00327   1 DVVFLLDGSGSMGGNRFELAKEFVLKLVEQLDIGPDGDRVGLVTFSDDARVLFPLNDSRSKDALLEALASLSYkLGGGTN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588   693 TGLALKHMFERSFTQGEGARPlstRVPRAAIVFTDGRAQD---DVSEWASKAKANGITMYAVGVGKAI-EEELQEIASEP 768
Cdd:smart00327  81 LGAALQYALENLFSKSAGSRR---GAPKVVILITDGESNDgpkDLLKAAKELKRSGVKVFVVGVGNDVdEEELKKLASAP 157

                          170
                   ....*....|....*...
gi 960139588   769 TNKHLFYAEDFSTMDEIS 786
Cdd:smart00327 158 GGVYVFLPELLDLLIDLL 175
VWA smart00327
von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins ...
 57-228 2.49e-45

von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.


Pssm-ID: 214621 [Multi-domain]  Cd Length: 175  Bit Score: 160.70  E-value: 2.49e-45
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588    57 DLVFIIDSSRSVNTHDYAKVKEFIVDILQFLDIGPDVTRVGLLQYGSTVKNEFSLKTFKRKSEVERAVKRMR-HLSTGTM 135
Cdd:smart00327   1 DVVFLLDGSGSMGGNRFELAKEFVLKLVEQLDIGPDGDRVGLVTFSDDARVLFPLNDSRSKDALLEALASLSyKLGGGTN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588   136 TGLAIQYALNIAFSEAEGARPlreNVPRVIMIVTDGRPQDS---VAEVAAKARDTGILIFAIGVGQ-VDFNTLKSIGSEP 211
Cdd:smart00327  81 LGAALQYALENLFSKSAGSRR---GAPKVVILITDGESNDGpkdLLKAAKELKRSGVKVFVVGVGNdVDEEELKKLASAP 157

                          170
                   ....*....|....*..
gi 960139588   212 HEDHVFLVANFSQIETL 228
Cdd:smart00327 158 GGVYVFLPELLDLLIDL 174
vWA_integrins_alpha_subunit cd01469
Integrins are a class of adhesion receptors that link the extracellular matrix to the ...
 57-228 5.77e-40

Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.


Pssm-ID: 238746 [Multi-domain]  Cd Length: 177  Bit Score: 145.58  E-value: 5.77e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  57 DLVFIIDSSRSVNTHDYAKVKEFIVDILQFLDIGPDVTRVGLLQYGSTVKNEFSLKTFKRKSEVERAVKRMRHLSTGTMT 136
Cdd:cd01469    2 DIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFRTEFTLNEYRTKEEPLSLVKHISQLLGLTNT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 137 GLAIQYALNIAFSEAEGARPlreNVPRVIMIVTDGRPQDS--VAEVAAKARDTGILIFAIGVGQVdFNT------LKSIG 208
Cdd:cd01469   82 ATAIQYVVTELFSESNGARK---DATKVLVVITDGESHDDplLKDVIPQAEREGIIRYAIGVGGH-FQRensreeLKTIA 157

                        170       180
                 ....*....|....*....|
gi 960139588 209 SEPHEDHVFLVANFSQIETL 228
Cdd:cd01469  158 SKPPEEHFFNVTDFAALKDI 177
vWA_collagen_alpha3-VI-like cd01481
VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable ...
 56-222 4.92e-38

VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.


Pssm-ID: 238758  Cd Length: 165  Bit Score: 139.77  E-value: 4.92e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  56 ADLVFIIDSSRSVNTHDYAKVKEFIVDILQFLDIGPDVTRVGLLQYGSTVKNEFSLKTFKRKSEVERAVKRMRhLSTGTM 135
Cdd:cd01481    1 KDIVFLIDGSDNVGSGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPRPEFYLNTHSTKADVLGAVRRLR-LRGGSQ 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 136 --TGLAIQYALNIAFSEAEGARpLRENVPRVIMIVTDGRPQDSVAEVAAKARDTGILIFAIGVGQVDFNTLKSIGSEPhe 213
Cdd:cd01481   80 lnTGSALDYVVKNLFTKSAGSR-IEEGVPQFLVLITGGKSQDDVERPAVALKRAGIVPFAIGARNADLAELQQIAFDP-- 156


                 ....*....
gi 960139588 214 DHVFLVANF 222
Cdd:cd01481  157 SFVFQVSDF 165
vWA_integrins_alpha_subunit cd01469
Integrins are a class of adhesion receptors that link the extracellular matrix to the ...
 613-785 1.33e-36

Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.


Pssm-ID: 238746 [Multi-domain]  Cd Length: 177  Bit Score: 135.95  E-value: 1.33e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 613 IDLVFVIDGSKSLGEENFEVVKQFVTGIIDSLTISPKAARVGLLQYSTQVHTEFTLRNFNSAKDMKKAVAHMKYMGKGSM 692
Cdd:cd01469    1 MDIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFRTEFTLNEYRTKEEPLSLVKHISQLLGLTN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 693 TGLALKHMFERSFTQGEGARPLSTRVpraAIVFTDGRAQDDVSEWA--SKAKANGITMYAVGVGKAIE-----EELQEIA 765
Cdd:cd01469   81 TATAIQYVVTELFSESNGARKDATKV---LVVITDGESHDDPLLKDviPQAEREGIIRYAIGVGGHFQrensrEELKTIA 157

                        170       180
                 ....*....|....*....|
gi 960139588 766 SEPTNKHLFYAEDFSTMDEI 785
Cdd:cd01469  158 SKPPEEHFFNVTDFAALKDI 177
vWA_collagen_alpha3-VI-like cd01481
VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable ...
 614-779 8.03e-34

VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.


Pssm-ID: 238758  Cd Length: 165  Bit Score: 127.44  E-value: 8.03e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 614 DLVFVIDGSKSLGEENFEVVKQFVTGIIDSLTISPKAARVGLLQYSTQVHTEFTLRNFNSAKDMKKAVAHMKYM-GKGSM 692
Cdd:cd01481    2 DIVFLIDGSDNVGSGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPRPEFYLNTHSTKADVLGAVRRLRLRgGSQLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 693 TGLALKHMFERSFTQGEGARpLSTRVPRAAIVFTDGRAQDDVSEWASKAKANGITMYAVGVGKAIEEELQEIASEPtnKH 772
Cdd:cd01481   82 TGSALDYVVKNLFTKSAGSR-IEEGVPQFLVLITGGKSQDDVERPAVALKRAGIVPFAIGARNADLAELQQIAFDP--SF 158


                 ....*..
gi 960139588 773 LFYAEDF 779
Cdd:cd01481  159 VFQVSDF 165
VWA_integrin_invertebrates cd01476
VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have ...
 56-217 1.22e-31

VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.


Pssm-ID: 238753 [Multi-domain]  Cd Length: 163  Bit Score: 121.35  E-value: 1.22e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  56 ADLVFIIDSSRSVNtHDYAKVKEFIVDILQFLDIGPDVTRVGLLQYGSTVKN--EFSLKTFKRKSEVERAVKRMRHLSTG 133
Cdd:cd01476    1 LDLLFVLDSSGSVR-GKFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQrvRFNLPKHNDGEELLEKVDNLRFIGGT 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 134 TMTGLAIQYALNIaFSEAEGARplrENVPRVIMIVTDGRPQDSVAEVAAKARDT-GILIFAIGVG---QVDFNTLKSIGS 209
Cdd:cd01476   80 TATGAAIEVALQQ-LDPSEGRR---EGIPKVVVVLTDGRSHDDPEKQARILRAVpNIETFAVGTGdpgTVDTEELHSITG 155


                 ....*...
gi 960139588 210 EphEDHVF 217
Cdd:cd01476  156 N--EDHIF 161
vWFA cd00198
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
 56-217 7.33e-30

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.


Pssm-ID: 238119 [Multi-domain]  Cd Length: 161  Bit Score: 116.13  E-value: 7.33e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  56 ADLVFIIDSSRSVNTHDYAKVKEFIVDILQFLDIGPDVTRVGLLQYGSTVKNEFSLKTFKRKSEVERAVKRMRH-LSTGT 134
Cdd:cd00198    1 ADIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTDTDKADLLEAIDALKKgLGGGT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 135 MTGLAIQYALNIAFSEAegarplRENVPRVIMIVTDGRPQDS---VAEVAAKARDTGILIFAIGVG-QVDFNTLKSIGSE 210
Cdd:cd00198   81 NIGAALRLALELLKSAK------RPNARRVIILLTDGEPNDGpelLAEAARELRKLGITVYTIGIGdDANEDELKEIADK 154


                 ....*..
gi 960139588 211 PHEDHVF 217
Cdd:cd00198  155 TTGGAVF 161
vWFA cd00198
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
 613-774 1.65e-29

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.


Pssm-ID: 238119 [Multi-domain]  Cd Length: 161  Bit Score: 114.97  E-value: 1.65e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 613 IDLVFVIDGSKSLGEENFEVVKQFVTGIIDSLTISPKAARVGLLQYSTQVHTEFTLRNFNSAKDMKKAVAHMKY-MGKGS 691
Cdd:cd00198    1 ADIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTDTDKADLLEAIDALKKgLGGGT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 692 MTGLALKHMFERSFTQGEGARplstrvPRAAIVFTDGRAQDD---VSEWASKAKANGITMYAVGVG-KAIEEELQEIASE 767
Cdd:cd00198   81 NIGAALRLALELLKSAKRPNA------RRVIILLTDGEPNDGpelLAEAARELRKLGITVYTIGIGdDANEDELKEIADK 154


                 ....*..
gi 960139588 768 PTNKHLF 774
Cdd:cd00198  155 TTGGAVF 161
vWA_collagen_alpha_1-VI-type cd01480
VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable ...
 611-784 1.92e-26

VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.


Pssm-ID: 238757 [Multi-domain]  Cd Length: 186  Bit Score: 107.09  E-value: 1.92e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 611 GPIDLVFVIDGSKSLGEENFEVVKQFVTGIIDSL------TISPKAARVGLLQYSTQVHTEFT-LRNFNSAKDMKKAVAH 683
Cdd:cd01480    1 GPVDITFVLDSSESVGLQNFDITKNFVKRVAERFlkdyyrKDPAGSWRVGVVQYSDQQEVEAGfLRDIRNYTSLKEAVDN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 684 MKYMGKGSMTGLALKhmfersFTQGEGARPLSTRVPRAAIVFTDGRAQ----DDVSEWASKAKANGITMYAVGVGKAIEE 759
Cdd:cd01480   81 LEYIGGGTFTDCALK------YATEQLLEGSHQKENKFLLVITDGHSDgspdGGIEKAVNEADHLGIKIFFVAVGSQNEE 154

                        170       180
                 ....*....|....*....|....*
gi 960139588 760 ELQEIASEPTNKHlfYAEDFSTMDE 784
Cdd:cd01480  155 PLSRIACDGKSAL--YRENFAELLW 177
VWA_integrin_invertebrates cd01476
VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have ...
 614-774 1.32e-23

VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.


Pssm-ID: 238753 [Multi-domain]  Cd Length: 163  Bit Score: 98.24  E-value: 1.32e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 614 DLVFVIDGSKSLGEEnFEVVKQFVTGIIDSLTISPKAARVGLLQYS--TQVHTEFTLRNFNSAKDMKKAVAHMKYMGKGS 691
Cdd:cd01476    2 DLLFVLDSSGSVRGK-FEKYKKYIERIVEGLEIGPTATRVALITYSgrGRQRVRFNLPKHNDGEELLEKVDNLRFIGGTT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 692 MTGLALKHMFERsFTQGEGARPlstRVPRAAIVFTDGRAQDDVSEWASKAKAN-GITMYAVGVG---KAIEEELQEIASE 767
Cdd:cd01476   81 ATGAAIEVALQQ-LDPSEGRRE---GIPKVVVVLTDGRSHDDPEKQARILRAVpNIETFAVGTGdpgTVDTEELHSITGN 156


                 ....*..
gi 960139588 768 PtnKHLF 774
Cdd:cd01476  157 E--DHIF 161
vWA_micronemal_protein cd01471
Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a ...
 57-198 4.15e-18

Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.


Pssm-ID: 238748 [Multi-domain]  Cd Length: 186  Bit Score: 83.20  E-value: 4.15e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  57 DLVFIIDSSRSVNTHD-YAKVKEFIVDILQFLDIGPDVTRVGLLQYGSTVKNEFSLKTFKRKSEvERAVKRMRHLSTG-- 133
Cdd:cd01471    2 DLYLLVDGSGSIGYSNwVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKELIRLSSPNSTNK-DLALNAIRALLSLyy 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 960139588 134 ----TMTGLAIQYALNIAFSeaegARPLRENVPRVIMIVTDG---RPQDSVAEvAAKARDTGILIFAIGVGQ 198
Cdd:cd01471   81 pngsTNTTSALLVVEKHLFD----TRGNRENAPQLVIIMTDGipdSKFRTLKE-ARKLRERGVIIAVLGVGQ 147
vWA_collagen_alpha_1-VI-type cd01480
VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable ...
 56-216 9.11e-18

VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.


Pssm-ID: 238757 [Multi-domain]  Cd Length: 186  Bit Score: 82.05  E-value: 9.11e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  56 ADLVFIIDSSRSVNTHDYAKVKEFIVDILQFL------DIGPDVTRVGLLQYGSTVKNEFSLKTFKR-KSEVERAVKRMR 128
Cdd:cd01480    3 VDITFVLDSSESVGLQNFDITKNFVKRVAERFlkdyyrKDPAGSWRVGVVQYSDQQEVEAGFLRDIRnYTSLKEAVDNLE 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 129 HLSTGTMTGLAIQYALNIAFSeaegARPLRENvpRVIMIVTDGRPQDSVA----EVAAKARDTGILIFAIGVGQVDFNTL 204
Cdd:cd01480   83 YIGGGTFTDCALKYATEQLLE----GSHQKEN--KFLLVITDGHSDGSPDggieKAVNEADHLGIKIFFVAVGSQNEEPL 156

                        170
                 ....*....|..
gi 960139588 205 KSIGSEPHEDHV 216
Cdd:cd01480  157 SRIACDGKSALY 168
ChlD COG1240
vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and ...
 612-785 1.64e-16

vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and metabolism];


Pssm-ID: 440853 [Multi-domain]  Cd Length: 262  Bit Score: 80.37  E-value: 1.64e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 612 PIDLVFVIDGSKSLGEEN-FEVVKQFVTGIIDSLtisPKAARVGLLQYSTQVHT--EFTlrnfNSAKDMKKAVAHMKYMG 688
Cdd:COG1240   92 GRDVVLVVDASGSMAAENrLEAAKGALLDFLDDY---RPRDRVGLVAFGGEAEVllPLT----RDREALKRALDELPPGG 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 689 KGSMtGLALKHMFERsftqgegARPLSTRVPRAAIVFTDGRA---QDDVSEWASKAKANGITMYAVGVGKAI--EEELQE 763
Cdd:COG1240  165 GTPL-GDALALALEL-------LKRADPARRKVIVLLTDGRDnagRIDPLEAAELAAAAGIRIYTIGVGTEAvdEGLLRE 236

                        170       180
                 ....*....|....*....|..
gi 960139588 764 IASEpTNKHLFYAEDFSTMDEI 785
Cdd:COG1240  237 IAEA-TGGRYFRADDLSELAAI 257
Matrilin_ccoil pfam10393
Trimeric coiled-coil oligomerization domain of matrilin; This short domain is a coiled coil ...
 870-912 6.33e-16

Trimeric coiled-coil oligomerization domain of matrilin; This short domain is a coiled coil structure and has a single cysteine residue at the start which is likely to form a di-sulfide bridge with a corresponding cysteine in an upstream EGF (pfam00008) domain thereby spanning a VWA (pfam00092) domain. All three domains can be associated together as in the cartilage matrix protein matrilin, where this domain is likely to be responsible for oligomerization.


Pssm-ID: 463070  Cd Length: 43  Bit Score: 72.00  E-value: 6.33e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 960139588  870 EKHDQCKCENLIMFQNLANEEVRKLTQRLEEMTQRMEALENRL 912
Cdd:pfam10393   1 VEEDPCKCEAIVAFQTKVESEIQALTTKLEEVTKRIEALENRL 43
ChlD COG1240
vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and ...
 54-207 1.94e-15

vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and metabolism];


Pssm-ID: 440853 [Multi-domain]  Cd Length: 262  Bit Score: 77.29  E-value: 1.94e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  54 KRADLVFIIDSSRSVNTHD-YAKVKEFIvdiLQFLDIGPDVTRVGLLQYGSTVKNEFSLkTfkrkSEVERAVKRMRHLST 132
Cdd:COG1240   91 RGRDVVLVVDASGSMAAENrLEAAKGAL---LDFLDDYRPRDRVGLVAFGGEAEVLLPL-T----RDREALKRALDELPP 162

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 133 GTMT--GLAIQYALNIAfseaegaRPLRENVPRVIMIVTDGRPQDSVA---EVAAKARDTGILIFAIGVG--QVDFNTLK 205
Cdd:COG1240  163 GGGTplGDALALALELL-------KRADPARRKVIVLLTDGRDNAGRIdplEAAELAAAAGIRIYTIGVGteAVDEGLLR 235


                 ..
gi 960139588 206 SI 207
Cdd:COG1240  236 EI 237
vWA_micronemal_protein cd01471
Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a ...
 613-760 2.12e-15

Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.


Pssm-ID: 238748 [Multi-domain]  Cd Length: 186  Bit Score: 75.50  E-value: 2.12e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 613 IDLVFVIDGSKSLGEEN-FEVVKQFVTGIIDSLTISPKAARVGLLQYSTQVHTEFTLRNFNSA-KDMKKAVAH---MKYM 687
Cdd:cd01471    1 LDLYLLVDGSGSIGYSNwVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKELIRLSSPNSTnKDLALNAIRallSLYY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 688 GKGSM-TGLAL----KHMFErsftqGEGARPlstRVPRAAIVFTDG---RAQDDVSEwASKAKANGITMYAVGVGKAIEE 759
Cdd:cd01471   81 PNGSTnTTSALlvveKHLFD-----TRGNRE---NAPQLVIIMTDGipdSKFRTLKE-ARKLRERGVIIAVLGVGQGVNH 151


                 .
gi 960139588 760 E 760
Cdd:cd01471  152 E 152
vWA_complement_factors cd01470
Complement factors B and C2 are two critical proteases for complement activation. They both ...
 618-784 1.89e-13

Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.


Pssm-ID: 238747 [Multi-domain]  Cd Length: 198  Bit Score: 70.01  E-value: 1.89e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 618 VIDGSKSLGEENFEVVKQFVTGIID---SLTISPkaaRVGLLQYSTQVHTEFTLRNFNS--AKDMKKAVAHMKYMGKGSM 692
Cdd:cd01470    6 ALDASDSIGEEDFDEAKNAIKTLIEkisSYEVSP---RYEIISYASDPKEIVSIRDFNSndADDVIKRLEDFNYDDHGDK 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 693 TG----LALKHMFERSFTQGEGARPLSTRVPRAAIVFTDGRAQ---------DDVSEWASKAKANGIT------MYAVGV 753
Cdd:cd01470   83 TGtntaAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNmggsplptvDKIKNLVYKNNKSDNPredyldVYVFGV 162

                        170       180       190
                 ....*....|....*....|....*....|...
gi 960139588 754 GKAI-EEELQEIASEPTN-KHLFYAEDFSTMDE 784
Cdd:cd01470  163 GDDVnKEELNDLASKKDNeRHFFKLKDYEDLQE 195
VWA_2 pfam13519
von Willebrand factor type A domain;
58-168 1.24e-12

von Willebrand factor type A domain;


Pssm-ID: 463909 [Multi-domain]  Cd Length: 103  Bit Score: 64.62  E-value: 1.24e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588   58 LVFIIDSSRSVNTHDYAK-----VKEFIVDILQFLDIgpdvTRVGLLQYGSTVKNEFSLKtfKRKSEVERAVKRMRHLST 132
Cdd:pfam13519   1 LVFVLDTSGSMRNGDYGPtrleaAKDAVLALLKSLPG----DRVGLVTFGDGPEVLIPLT--KDRAKILRALRRLEPKGG 74

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 960139588  133 GTMTGLAIQYALNIAFSEaegarplRENVPRVIMIV 168
Cdd:pfam13519  75 GTNLAAALQLARAALKHR-------RKNQPRRIVLI 103
YfbK COG2304
Secreted protein containing bacterial Ig-like domain and vWFA domain [General function ...
 52-202 6.66e-11

Secreted protein containing bacterial Ig-like domain and vWFA domain [General function prediction only];


Pssm-ID: 441879 [Multi-domain]  Cd Length: 289  Bit Score: 64.35  E-value: 6.66e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  52 ENKRADLVFIIDSSRSVNTHDYAKVKEFIVDILQFLdiGPDvTRVGLLQYGSTVKNEFSLKTFKRKSEVERAVKRMRhLS 131
Cdd:COG2304   88 ERPPLNLVFVIDVSGSMSGDKLELAKEAAKLLVDQL--RPG-DRVSIVTFAGDARVLLPPTPATDRAKILAAIDRLQ-AG 163

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 960139588 132 TGTMTGLAIQYALNIAfseaegARPLRENVPRVIMIVTDGRP------QDSVAEVAAKARDTGILIFAIGVGQvDFN 202
Cdd:COG2304  164 GGTALGAGLELAYELA------RKHFIPGRVNRVILLTDGDAnvgitdPEELLKLAEEAREEGITLTTLGVGS-DYN 233
YfbK COG2304
Secreted protein containing bacterial Ig-like domain and vWFA domain [General function ...
 612-811 1.01e-10

Secreted protein containing bacterial Ig-like domain and vWFA domain [General function prediction only];


Pssm-ID: 441879 [Multi-domain]  Cd Length: 289  Bit Score: 63.58  E-value: 1.01e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 612 PIDLVFVIDGSKSLGEENFEVVKQFVTGIIDSLTisPKAaRVGLLQYSTQVHTEFTLRNFNSAKDMKKAVAHMK-----Y 686
Cdd:COG2304   91 PLNLVFVIDVSGSMSGDKLELAKEAAKLLVDQLR--PGD-RVSIVTFAGDARVLLPPTPATDRAKILAAIDRLQagggtA 167

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 687 MGKGSMTGLALkhmFERSFTQGegarplstrVPRAAIVFTDGRA------QDDVSEWASKAKANGITMYAVGVGKAIEEE 760
Cdd:COG2304  168 LGAGLELAYEL---ARKHFIPG---------RVNRVILLTDGDAnvgitdPEELLKLAEEAREEGITLTTLGVGSDYNED 235

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 960139588 761 LQEIASEPTNKHLFYAEDFSTMDEISEKLKKGIC-EALEDSDGRQDSPAGEL 811
Cdd:COG2304  236 LLERLADAGGGNYYYIDDPEEAEKVFVREFSRIGyENRALATEDFPLPYGTL 287
vWA_ATR cd01474
ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, ...
 611-794 5.03e-09

ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.


Pssm-ID: 238751 [Multi-domain]  Cd Length: 185  Bit Score: 56.75  E-value: 5.03e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 611 GPIDLVFVIDGSKSLGEENFEVVkQFVTGIIDSLTiSPKAaRVGLLQYSTQVHTEFTLRNFNSA-----KDMKKAV-AHM 684
Cdd:cd01474    3 GHFDLYFVLDKSGSVAANWIEIY-DFVEQLVDRFN-SPGL-RFSFITFSTRATKILPLTDDSSAiikglEVLKKVTpSGQ 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 685 KYMGKGsmtglaLKHMFERSFTQGEGARplstRVPRAAIVFTDGRAQDDV----SEWASKAKANGITMYAVGVGKAIEEE 760
Cdd:cd01474   80 TYIHEG------LENANEQIFNRNGGGR----ETVSVIIALTDGQLLLNGhkypEHEAKLSRKLGAIVYCVGVTDFLKSQ 149

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 960139588 761 LQEIASEPtnKHLFYAED-FSTMDEISEKLKKGIC 794
Cdd:cd01474  150 LINIADSK--EYVFPVTSgFQALSGIIESVVKKAC 182
VWA_2 pfam13519
von Willebrand factor type A domain;
615-713 6.59e-09

von Willebrand factor type A domain;


Pssm-ID: 463909 [Multi-domain]  Cd Length: 103  Bit Score: 54.22  E-value: 6.59e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  615 LVFVIDGSKS-----LGEENFEVVKQFVTGIIDSLTISpkaaRVGLLQYSTQVHTEFTLRnfNSAKDMKKAVAHMKYMGK 689
Cdd:pfam13519   1 LVFVLDTSGSmrngdYGPTRLEAAKDAVLALLKSLPGD----RVGLVTFGDGPEVLIPLT--KDRAKILRALRRLEPKGG 74

                          90       100
                  ....*....|....*....|....
gi 960139588  690 GSMTGLALKHMFERSFTQGEGARP 713
Cdd:pfam13519  75 GTNLAAALQLARAALKHRRKNQPR 98
TerY COG4245
Uncharacterized conserved protein YegL, contains vWA domain of TerY type [Function unknown];
54-228 7.87e-09

Uncharacterized conserved protein YegL, contains vWA domain of TerY type [Function unknown];


Pssm-ID: 443387 [Multi-domain]  Cd Length: 196  Bit Score: 56.47  E-value: 7.87e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  54 KRADLVFIIDSSRSVNTHDYAKVKEFIVDILQFLDIGPDVT---RVGLLQYGSTVKNEFSLktfkrkSEVERAVkrMRHL 130
Cdd:COG4245    4 RRLPVYLLLDTSGSMSGEPIEALNEGLQALIDELRQDPYALetvEVSVITFDGEAKVLLPL------TDLEDFQ--PPDL 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 131 ST--GTMTGLAIQYALNI-----AFSEAEGARPLRenvpRVIMIVTDGRPQDSVAEVAAKA-----RDTGILIFAIGVGQ 198
Cdd:COG4245   76 SAsgGTPLGAALELLLDLierrvQKYTAEGKGDWR----PVVFLITDGEPTDSDWEAALQRlkdgeAAKKANIFAIGVGP 151

                        170       180       190
                 ....*....|....*....|....*....|.
gi 960139588 199 -VDFNTLKSIGSephEDHVFLVANFSQIETL 228
Cdd:COG4245  152 dADTEVLKQLTD---PVRALDALDGLDFREF 179
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 324-359 7.01e-08

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 49.16  E-value: 7.01e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 960139588  324 CASENHGCEHECVNADGSYLCQCHEGFALNPDKKTC 359
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
 479-522 9.73e-08

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 53.54  E-value: 9.73e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 960139588 479 GKTCAKLDSCALGDHGCEHSCVSSEDSFVCQCFEGYILREDGKT 522
Cdd:cd01475  181 GKICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNKT 224
vWA_CTRP cd01473
CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an ...
 614-794 9.85e-08

CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.


Pssm-ID: 238750 [Multi-domain]  Cd Length: 192  Bit Score: 53.09  E-value: 9.85e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 614 DLVFVIDGSKSLGEENFEV-VKQFVTGIIDSLTISPKAARVGLLQYSTQVHTEFTLRNFNSAKD---MKKAVAHMKYMGK 689
Cdd:cd01473    2 DLTLILDESASIGYSNWRKdVIPFTEKIINNLNISKDKVHVGILLFAEKNRDVVPFSDEERYDKnelLKKINDLKNSYRS 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 690 GSMTGL--ALKHMFErSFTQGEGARplsTRVPRAAIVFTDG----RAQDDVSEWASKAKANGITMYAVGVGKAIEEELQE 763
Cdd:cd01473   82 GGETYIveALKYGLK-NYTKHGNRR---KDAPKVTMLFTDGndtsASKKELQDISLLYKEENVKLLVVGVGAASENKLKL 157

                        170       180       190
                 ....*....|....*....|....*....|....
gi 960139588 764 IA---SEPTNKHLFYAEDFSTMDEISEKLKKGIC 794
Cdd:cd01473  158 LAgcdINNDNCPNVIKTEWNNLNGISKFLTDKIC 191
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
 520-562 2.35e-07

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 52.77  E-value: 2.35e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 960139588 520 GKTCRRKDVCQAIDHGCEHICVNSDDSYTCECLEGFRLAEDGK 562
Cdd:cd01475  181 GKICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNK 223
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 529-564 2.36e-07

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 47.62  E-value: 2.36e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 960139588  529 CQAIDHGCEHICVNSDDSYTCECLEGFRLAEDGKRC 564
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
vWA_CTRP cd01473
CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an ...
 57-237 3.11e-07

CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.


Pssm-ID: 238750 [Multi-domain]  Cd Length: 192  Bit Score: 51.55  E-value: 3.11e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  57 DLVFIIDSSRSVNthDYAKVKEFI---VDILQFLDIGPDVTRVGLLQYGSTVK--NEFSLKTFKRKSE-VERAVKRMRHL 130
Cdd:cd01473    2 DLTLILDESASIG--YSNWRKDVIpftEKIINNLNISKDKVHVGILLFAEKNRdvVPFSDEERYDKNElLKKINDLKNSY 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 131 STGTMTGL--AIQYAL-NIAFSEAEgarplRENVPRVIMIVTDGRPQDS----VAEVAAKARDTGILIFAIGVGQVDFNT 203
Cdd:cd01473   80 RSGGETYIveALKYGLkNYTKHGNR-----RKDAPKVTMLFTDGNDTSAskkeLQDISLLYKEENVKLLVVGVGAASENK 154

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 960139588 204 LKSIG--SEPHEDHVFLV-ANFSQIETLTSVFQKKLC 237
Cdd:cd01473  155 LKLLAgcDINNDNCPNVIkTEWNNLNGISKFLTDKIC 191
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
 561-603 3.95e-07

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 52.00  E-value: 3.95e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 960139588 561 GKRCRRKDVCKSTHHGCEHICVNNGNSYICKCSEGFVLAEDGR 603
Cdd:cd01475  181 GKICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNK 223
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 365-400 4.73e-07

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 46.85  E-value: 4.73e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 960139588  365 CALNKPGCEHECVNMEESYYCRCHRGYTLDPNGKTC 400
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 570-605 5.02e-07

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 46.85  E-value: 5.02e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 960139588  570 CKSTHHGCEHICVNNGNSYICKCSEGFVLAEDGRRC 605
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 242-277 5.22e-07

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 46.85  E-value: 5.22e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 960139588  242 CSTLEHNCAHFCINIPGSYVCRCKQGYILNSDQTTC 277
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
vWA_BatA_type cd01467
VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood ...
 613-778 9.39e-07

VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Members of this subgroup are bacterial in origin. They are typified by the presence of a MIDAS motif.


Pssm-ID: 238744 [Multi-domain]  Cd Length: 180  Bit Score: 50.02  E-value: 9.39e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 613 IDLVFVIDGSKSLGEENF------EVVKQFVTGIIDSLtispKAARVGLLQYS--TQVHTEFT-----LRNFnsAKDMKK 679
Cdd:cd01467    3 RDIMIALDVSGSMLAQDFvkpsrlEAAKEVLSDFIDRR----ENDRIGLVVFAgaAFTQAPLTldresLKEL--LEDIKI 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 680 AVAhmkymGKGSMTG----LALKHmfersFTQGEGarplstrVPRAAIVFTDG-RAQDDVSEWASK--AKANGITMYAVG 752
Cdd:cd01467   77 GLA-----GQGTAIGdaigLAIKR-----LKNSEA-------KERVIVLLTDGeNNAGEIDPATAAelAKNKGVRIYTIG 139

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 960139588 753 VGKA------------IEEELQEIASEpTNKHLFYAED 778
Cdd:cd01467  140 VGKSgsgpkpdgstilDEDSLVEIADK-TGGRIFRALD 176
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 283-318 1.38e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 45.70  E-value: 1.38e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 960139588  283 CAMEDHNCEQLCVNVPGSFVCQCYSGYALAEDGKRC 318
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 488-523 2.93e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 44.54  E-value: 2.93e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 960139588  488 CALGDHGCEHSCVSSEDSFVCQCFEGYILREDGKTC 523
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 48-238 3.24e-06

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 50.73  E-value: 3.24e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  48 ESSCeNKRADLVFIIDSSRSVNTHDY-AKVKEFIVDILQFLDIGPDVTRVGLLQYGSTVKNEFSLKTFKRKSEvERAVKR 126
Cdd:PTZ00441  36 EEVC-NEEVDLYLLVDGSGSIGYHNWiTHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTTELIRLGSGASKDK-EQALII 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 127 MRHL-STGTMTGlaiQYALNIAFSEAE---GARPLRENVPRVIMIVTDGRP---QDSVaEVAAKARDTGILIFAIGVGQ- 198
Cdd:PTZ00441 114 VKSLrKTYLPYG---KTNMTDALLEVRkhlNDRVNRENAIQLVILMTDGIPnskYRAL-EESRKLKDRNVKLAVIGIGQg 189

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 960139588 199 --VDFNTLkSIGSEPHED--HVFLVANFSQIETLTSVFQKKLCT 238
Cdd:PTZ00441 190 inHQFNRL-LAGCRPREGkcKFYSDADWEEAKNLIKPFIAKVCT 232
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 406-441 6.06e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 43.77  E-value: 6.06e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 960139588  406 CAQQDHGCEQLCLNTEDSFVCQCSEGFLINEDLKTC 441
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
vWA_ATR cd01474
ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, ...
 56-238 6.17e-06

ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.


Pssm-ID: 238751 [Multi-domain]  Cd Length: 185  Bit Score: 47.89  E-value: 6.17e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  56 ADLVFIIDSSRSVNtHDYAKVKEFIVDIL-QFLDIGpdvTRVGLLQYGSTVKNEFSLKTFKrkSEVERAVKRMRHLSTGT 134
Cdd:cd01474    5 FDLYFVLDKSGSVA-ANWIEIYDFVEQLVdRFNSPG---LRFSFITFSTRATKILPLTDDS--SAIIKGLEVLKKVTPSG 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 135 MTglAIQYALNIA----FSEAEGARplRENvpRVIMIVTDGR----PQDSVAEVAAKARDTGILIFAIGVgqVDFNTLKS 206
Cdd:cd01474   79 QT--YIHEGLENAneqiFNRNGGGR--ETV--SVIIALTDGQlllnGHKYPEHEAKLSRKLGAIVYCVGV--TDFLKSQL 150

                        170       180       190
                 ....*....|....*....|....*....|...
gi 960139588 207 IGSEPHEDHVFLV-ANFSQIETLTSVFQKKLCT 238
Cdd:cd01474  151 INIADSKEYVFPVtSGFQALSGIIESVVKKACI 183
vWA_subgroup cd01465
VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood ...
 56-202 1.46e-05

VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Not much is known about the function of the VWA domain in these proteins. The members do have a conserved MIDAS motif. The biochemical function however is not known.


Pssm-ID: 238742 [Multi-domain]  Cd Length: 170  Bit Score: 46.11  E-value: 1.46e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588  56 ADLVFIIDSSRSVNTHDYAKVKE---FIVDILQFLDigpdvtRVGLLQYGSTVKNEFSLKTFKRKSEVERAVKRmrhLST 132
Cdd:cd01465    1 LNLVFVIDRSGSMDGPKLPLVKSalkLLVDQLRPDD------RLAIVTYDGAAETVLPATPVRDKAAILAAIDR---LTA 71

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 960139588 133 GTMTGLA--IQYALNIAfseAEGARPLRENvpRVIMIvTDGRPQ------DSVAEVAAKARDTGILIFAIGVGQvDFN 202
Cdd:cd01465   72 GGSTAGGagIQLGYQEA---QKHFVPGGVN--RILLA-TDGDFNvgetdpDELARLVAQKRESGITLSTLGFGD-NYN 142
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 447-482 5.35e-05

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 41.07  E-value: 5.35e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 960139588  447 CLLSDHGCEYSCVNMDRSFACQCPEGHVLRSDGKTC 482
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
vWA_F09G8-8_type cd01477
VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood ...
 603-677 9.80e-04

VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. The members of this subgroup lack the MIDAS motif. This subgroup is found only in C. elegans and the members identified thus far are always found fused to a C-Lectin type domain. Biochemical function thus far has not be attributed to any of the members of this subgroup.


Pssm-ID: 238754 [Multi-domain]  Cd Length: 193  Bit Score: 41.25  E-value: 9.80e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960139588 603 RRCKKCTEGP-IDLVFVIDGSKSLGEENFEVVKQFVTGIIDSLTI------SPKAARVGLLQYSTQVHTEFTLRNFNSAK 675
Cdd:cd01477    9 RECGSDIKNLwLDIVFVVDNSKGMTQGGLWQVRATISSLFGSSSQigtdydDPRSTRVGLVTYNSNATVVADLNDLQSFD 88


                 ..
gi 960139588 676 DM 677
Cdd:cd01477   89 DL 90
EGF_3 pfam12947
EGF domain; This family includes a variety of EGF-like domain homologs. This family includes ...
 242-271 4.02e-03

EGF domain; This family includes a variety of EGF-like domain homologs. This family includes the C-terminal domain of the malaria parasite MSP1 protein.


Pssm-ID: 463759 [Multi-domain]  Cd Length: 36  Bit Score: 35.65  E-value: 4.02e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 960139588  242 CSTLEHNCAH--FCINIPGSYVCRCKQGYILN 271
Cdd:pfam12947   1 CSDNNGGCHPnaTCTNTGGSFTCTCNDGYTGD 32
EGF_CA smart00179
Calcium-binding EGF-like domain;
281-319 4.81e-03

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 35.69  E-value: 4.81e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 960139588   281 DLCAmEDHNCEQ--LCVNVPGSFVCQCYSGYalaEDGKRCV 319
Cdd:smart00179   3 DECA-SGNPCQNggTCVNTVGSYRCECPPGY---TDGRNCE 39
EGF_CA smart00179
Calcium-binding EGF-like domain;
362-400 5.26e-03

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 35.30  E-value: 5.26e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 960139588   362 INYCALNKPgCEH--ECVNMEESYYCRCHRGYTldpNGKTC 400
Cdd:smart00179   2 IDECASGNP-CQNggTCVNTVGSYRCECPPGYT---DGRNC 38
EGF_CA smart00179
Calcium-binding EGF-like domain;
321-360 8.44e-03

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 34.92  E-value: 8.44e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 960139588   321 VDYCASeNHGCEH--ECVNADGSYLCQCHEGFAlnpDKKTCT 360
Cdd:smart00179   2 IDECAS-GNPCQNggTCVNTVGSYRCECPPGYT---DGRNCE 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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