NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1009287629|ref|NP_001308412|]
View 

small ribosomal subunit protein eS19 isoform 1 [Homo sapiens]

Protein Classification

eS19 family ribosomal protein( domain architecture ID 10471257)

eS19 family ribosomal protein may be involved in maturation of the 30S ribosomal subunit and is required for pre-rRNA processing and maturation of 40S ribosomal subunits.

Gene Ontology:  GO:0006412|GO:0003735
PubMed:  24524803

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
Ribosomal_S19e pfam01090
Ribosomal protein S19e;
5-141 1.22e-78

Ribosomal protein S19e;


:

Pssm-ID: 460058  Cd Length: 137  Bit Score: 228.86  E-value: 1.22e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1009287629   5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQR 84
Cdd:pfam01090   1 TVKDVPADKLIKALAEYLKKSGKIKPPEWADFVKTGVHKELAPYDPDWWYVRAASILRKVYLRGPVGVGRLRKVYGGRKR 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1009287629  85 NGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAA 141
Cdd:pfam01090  81 RGSRPSHFAKGSGSIIRKILQQLEKAGLVKKAKGKGRRLTPKGRSLLDRIAGEVAKE 137
 
Name Accession Description Interval E-value
Ribosomal_S19e pfam01090
Ribosomal protein S19e;
5-141 1.22e-78

Ribosomal protein S19e;


Pssm-ID: 460058  Cd Length: 137  Bit Score: 228.86  E-value: 1.22e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1009287629   5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQR 84
Cdd:pfam01090   1 TVKDVPADKLIKALAEYLKKSGKIKPPEWADFVKTGVHKELAPYDPDWWYVRAASILRKVYLRGPVGVGRLRKVYGGRKR 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1009287629  85 NGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAA 141
Cdd:pfam01090  81 RGSRPSHFAKGSGSIIRKILQQLEKAGLVKKAKGKGRRLTPKGRSLLDRIAGEVAKE 137
RPS19A COG2238
Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]; Ribosomal ...
4-139 7.82e-51

Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]; Ribosomal protein S19E (S16A) is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441839  Cd Length: 151  Bit Score: 158.84  E-value: 7.82e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1009287629   4 VTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQ 83
Cdd:COG2238     2 VTVYDVPADLLIERLAEYLKEVDEIEPPEWAEFVKTGVHKERPPEQEDWWYVRAASLLRKVYLDGPVGVERLRTEYGGKK 81
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1009287629  84 RNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139
Cdd:COG2238    82 RRGVAPEHFRKGSGSIIRKILQQLEKAGLVEKTKGKGRVVTPEGRSLLDKLAYEVL 137
PRK09333 PRK09333
30S ribosomal protein S19e; Provisional
4-139 2.97e-48

30S ribosomal protein S19e; Provisional


Pssm-ID: 236470  Cd Length: 150  Bit Score: 152.32  E-value: 2.97e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1009287629   4 VTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQ 83
Cdd:PRK09333    2 VTVYDVPADLLIERLAEYLKNVDEIKPPEWAAFVKTGVHKERPPEQEDWWYVRAASILRKVYIDGPVGVERLRTAYGGRK 81
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1009287629  84 RNGVMPSHFSRGSKSVARRVLQALEGLKMVEKdQDGGRKLTPQGQRDLDRIAGQVA 139
Cdd:PRK09333   82 NRGVRPEHFVKGSGSIIRKILQQLEKAGLVEK-TKKGRVITPKGRSLLDNLAAEVK 136
 
Name Accession Description Interval E-value
Ribosomal_S19e pfam01090
Ribosomal protein S19e;
5-141 1.22e-78

Ribosomal protein S19e;


Pssm-ID: 460058  Cd Length: 137  Bit Score: 228.86  E-value: 1.22e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1009287629   5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQR 84
Cdd:pfam01090   1 TVKDVPADKLIKALAEYLKKSGKIKPPEWADFVKTGVHKELAPYDPDWWYVRAASILRKVYLRGPVGVGRLRKVYGGRKR 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1009287629  85 NGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAA 141
Cdd:pfam01090  81 RGSRPSHFAKGSGSIIRKILQQLEKAGLVKKAKGKGRRLTPKGRSLLDRIAGEVAKE 137
RPS19A COG2238
Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]; Ribosomal ...
4-139 7.82e-51

Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]; Ribosomal protein S19E (S16A) is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441839  Cd Length: 151  Bit Score: 158.84  E-value: 7.82e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1009287629   4 VTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQ 83
Cdd:COG2238     2 VTVYDVPADLLIERLAEYLKEVDEIEPPEWAEFVKTGVHKERPPEQEDWWYVRAASLLRKVYLDGPVGVERLRTEYGGKK 81
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1009287629  84 RNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139
Cdd:COG2238    82 RRGVAPEHFRKGSGSIIRKILQQLEKAGLVEKTKGKGRVVTPEGRSLLDKLAYEVL 137
PRK09333 PRK09333
30S ribosomal protein S19e; Provisional
4-139 2.97e-48

30S ribosomal protein S19e; Provisional


Pssm-ID: 236470  Cd Length: 150  Bit Score: 152.32  E-value: 2.97e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1009287629   4 VTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQ 83
Cdd:PRK09333    2 VTVYDVPADLLIERLAEYLKNVDEIKPPEWAAFVKTGVHKERPPEQEDWWYVRAASILRKVYIDGPVGVERLRTAYGGRK 81
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1009287629  84 RNGVMPSHFSRGSKSVARRVLQALEGLKMVEKdQDGGRKLTPQGQRDLDRIAGQVA 139
Cdd:PRK09333   82 NRGVRPEHFVKGSGSIIRKILQQLEKAGLVEK-TKKGRVITPKGRSLLDNLAAEVK 136
PTZ00095 PTZ00095
40S ribosomal protein S19; Provisional
3-139 2.57e-38

40S ribosomal protein S19; Provisional


Pssm-ID: 140127  Cd Length: 169  Bit Score: 127.59  E-value: 2.57e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1009287629   3 GVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGR 82
Cdd:PTZ00095   25 NATLKDVSPWRFIKAFAQHFKLEGKIFVPKCTEIVKTSHGRELAPQNPDWYYIRCAAVLRALYLRPDVGYGGLRKRFSSK 104
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1009287629  83 QRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDG-GRKLTPQGQRDLDRIAGQVA 139
Cdd:PTZ00095  105 KRRGSAPNHTVRASGKILRWICQQLEKLGLVEQGPKKkGRRLTRKGCNFANAFARQVT 162
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH