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Conserved domains on  [gi|1208914960|ref|NP_001339609|]
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transmembrane protein 18 isoform 2 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TMEM18 pfam14770
Transmembrane protein 18; The function of this family is not known, however it is predicted to ...
 5-114 8.91e-54

Transmembrane protein 18; The function of this family is not known, however it is predicted to be a three-pass membrane protein.


:

Pssm-ID: 405460  Cd Length: 118  Bit Score: 164.30  E-value: 8.91e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1208914960   5 YLQTDWTEPWLMGLATFHALCVLLTCLSSRSYRLQIGHFLCLVILVYCAEYINEAAAMNWRLFSKYQYFDSRGMFISIVF 84
Cdd:pfam14770   3 LHAVDWSEPWLIGLIAFHVLLLVLALLTRRSYNFQMVLFLLLLLLVYFAEYINELAARNWRSFSKQNYFDSRGLFISVVF 82

                          90       100       110
                  ....*....|....*....|....*....|
gi 1208914960  85 SAPLLVNAMIIVVMWVWKTLNVMTDLKNAQ 114
Cdd:pfam14770  83 SGPLLLNCLIILVNWLYQTVSLMVELKRAQ 112
 
Name Accession Description Interval E-value
TMEM18 pfam14770
Transmembrane protein 18; The function of this family is not known, however it is predicted to ...
 5-114 8.91e-54

Transmembrane protein 18; The function of this family is not known, however it is predicted to be a three-pass membrane protein.


Pssm-ID: 405460  Cd Length: 118  Bit Score: 164.30  E-value: 8.91e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1208914960   5 YLQTDWTEPWLMGLATFHALCVLLTCLSSRSYRLQIGHFLCLVILVYCAEYINEAAAMNWRLFSKYQYFDSRGMFISIVF 84
Cdd:pfam14770   3 LHAVDWSEPWLIGLIAFHVLLLVLALLTRRSYNFQMVLFLLLLLLVYFAEYINELAARNWRSFSKQNYFDSRGLFISVVF 82

                          90       100       110
                  ....*....|....*....|....*....|
gi 1208914960  85 SAPLLVNAMIIVVMWVWKTLNVMTDLKNAQ 114
Cdd:pfam14770  83 SGPLLLNCLIILVNWLYQTVSLMVELKRAQ 112
 
Name Accession Description Interval E-value
TMEM18 pfam14770
Transmembrane protein 18; The function of this family is not known, however it is predicted to ...
 5-114 8.91e-54

Transmembrane protein 18; The function of this family is not known, however it is predicted to be a three-pass membrane protein.


Pssm-ID: 405460  Cd Length: 118  Bit Score: 164.30  E-value: 8.91e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1208914960   5 YLQTDWTEPWLMGLATFHALCVLLTCLSSRSYRLQIGHFLCLVILVYCAEYINEAAAMNWRLFSKYQYFDSRGMFISIVF 84
Cdd:pfam14770   3 LHAVDWSEPWLIGLIAFHVLLLVLALLTRRSYNFQMVLFLLLLLLVYFAEYINELAARNWRSFSKQNYFDSRGLFISVVF 82

                          90       100       110
                  ....*....|....*....|....*....|
gi 1208914960  85 SAPLLVNAMIIVVMWVWKTLNVMTDLKNAQ 114
Cdd:pfam14770  83 SGPLLLNCLIILVNWLYQTVSLMVELKRAQ 112
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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