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Conserved domains on  [gi|1208914998|ref|NP_001339616|]
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small integral membrane protein 30 precursor [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4730 super family cl24448
Domain of unknown function (DUF4730); This family of proteins is found in eukaryotes. Proteins ...
 1-54 1.32e-10

Domain of unknown function (DUF4730); This family of proteins is found in eukaryotes. Proteins in this family are approximately 60 amino acids in length.


The actual alignment was detected with superfamily member pfam15873:

Pssm-ID: 292498  Cd Length: 55  Bit Score: 50.59  E-value: 1.32e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1208914998  1 MTSVSTQLSLVLMSLLLVLPVVEA-VEAGDAIALLLGVVLSITGICACLGVYARK 54
Cdd:pfam15873  1 MSTVLRALLIVFFSLLLGIPGVEAsLDAGDAIALMLGIVLTIFGICACLGIYARK 55
 
Name Accession Description Interval E-value
DUF4730 pfam15873
Domain of unknown function (DUF4730); This family of proteins is found in eukaryotes. Proteins ...
 1-54 1.32e-10

Domain of unknown function (DUF4730); This family of proteins is found in eukaryotes. Proteins in this family are approximately 60 amino acids in length.


Pssm-ID: 292498  Cd Length: 55  Bit Score: 50.59  E-value: 1.32e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1208914998  1 MTSVSTQLSLVLMSLLLVLPVVEA-VEAGDAIALLLGVVLSITGICACLGVYARK 54
Cdd:pfam15873  1 MSTVLRALLIVFFSLLLGIPGVEAsLDAGDAIALMLGIVLTIFGICACLGIYARK 55
 
Name Accession Description Interval E-value
DUF4730 pfam15873
Domain of unknown function (DUF4730); This family of proteins is found in eukaryotes. Proteins ...
 1-54 1.32e-10

Domain of unknown function (DUF4730); This family of proteins is found in eukaryotes. Proteins in this family are approximately 60 amino acids in length.


Pssm-ID: 292498  Cd Length: 55  Bit Score: 50.59  E-value: 1.32e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1208914998  1 MTSVSTQLSLVLMSLLLVLPVVEA-VEAGDAIALLLGVVLSITGICACLGVYARK 54
Cdd:pfam15873  1 MSTVLRALLIVFFSLLLGIPGVEAsLDAGDAIALMLGIVLTIFGICACLGIYARK 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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