|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
445-622 |
9.85e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 9.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 445 IKRIESENLRIQNEQKKAAKREEA-LASFEAWKAMKEKEAKRIAAKKR----LEEKNKKKTEEENAMRKGEALQAFEKWK 519
Cdd:PTZ00121 1410 LKKAAAAKKKADEAKKKAEEKKKAdEAKKKAEEAKKADEAKKKAEEAKkaeeAKKKAEEAKKADEAKKKAEEAKKADEAK 1489
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 520 eKKLEYLKEKTRREKEYERAKKQKEEEAVAEKKKDSLTAFEKWSERK-EALLKQKEKEKINERRK-EELKRAEKKDKDKQ 597
Cdd:PTZ00121 1490 -KKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKaDEAKKAEEKKKADELKKaEELKKAEEKKKAEE 1568
|
170 180
....*....|....*....|....*
gi 1251770290 598 AISEYEKWLEKKERQERIERKQKKR 622
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEAR 1593
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
407-629 |
5.69e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.22 E-value: 5.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 407 QKQPRKQSLEPDKADHIRAAVYQEWLEKKNV--YLHEMHRIKRIESENLRIQNEQKKAA----KREEALASFEAWKAMKE 480
Cdd:PTZ00121 1564 KKAEEAKKAEEDKNMALRKAEEAKKAEEARIeeVMKLYEEEKKMKAEEAKKAEEAKIKAeelkKAEEEKKKVEQLKKKEA 1643
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 481 KEAK-----RIAAKKRLEEKNKKKTEEENAMRKGEALQAFEKWKEKKLEYLKEKTRREKEYERAKKQKEEEA-------- 547
Cdd:PTZ00121 1644 EEKKkaeelKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKkkaeelkk 1723
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 548 ---VAEKKKDSLTAFEKWSERK--EALLKQKEKEKINERRKEELKRAEKKDKDKQAISEYEkwLEKKERQERIERKQKKR 622
Cdd:PTZ00121 1724 aeeENKIKAEEAKKEAEEDKKKaeEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEE--LDEEDEKRRMEVDKKIK 1801
|
....*..
gi 1251770290 623 HSFLESE 629
Cdd:PTZ00121 1802 DIFDNFA 1808
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
346-629 |
5.99e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.22 E-value: 5.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 346 EPAKKANEDRNTKNKKTTNNRVSSASGRLMTSEFLKRSGPTKRSPSAATSSHYLGSLKVLDQKQPRKQSLEPDKADHIRA 425
Cdd:PTZ00121 1474 EAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 426 AVYQEWLEKKNvYLHEMHRIKRIESENLRIQNEQKKA--AKREEALASFEAWKAMK------EKEAKRIAAKKRLEEKNK 497
Cdd:PTZ00121 1554 AEELKKAEEKK-KAEEAKKAEEDKNMALRKAEEAKKAeeARIEEVMKLYEEEKKMKaeeakkAEEAKIKAEELKKAEEEK 1632
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 498 KKTEEENAMRKGEALQAFEKWKEKKLEYLKEKTRREKEYERAKKQKEEEAVAEKKKDSLTAFEKWSERKEALLKQKEKEK 577
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEA 1712
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1251770290 578 INERRKEELKRAEKKDKDKQAISEYEKWLEKKERQE-RIERKQKKRHSFLESE 629
Cdd:PTZ00121 1713 EEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEaKKDEEEKKKIAHLKKE 1765
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
483-591 |
9.52e-07 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 51.70 E-value: 9.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 483 AKRIAAKKRLEEKNKKKTEEENAMRKGEA------LQAFEKWKEKKLEYLKEKTRREKEYERAKK---QKEE-----EAV 548
Cdd:PRK12704 25 RKKIAEAKIKEAEEEAKRILEEAKKEAEAikkealLEAKEEIHKLRNEFEKELRERRNELQKLEKrllQKEEnldrkLEL 104
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1251770290 549 AEKKKDSLTAFEKWSERKEALLKQKEKEkINERRKEELKRAEK 591
Cdd:PRK12704 105 LEKREEELEKKEKELEQKQQELEKKEEE-LEELIEEQLQELER 146
|
|
| CCDC34 |
pfam13904 |
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several ... |
510-623 |
1.69e-06 |
|
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known.
Pssm-ID: 464032 [Multi-domain] Cd Length: 221 Bit Score: 49.32 E-value: 1.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 510 EALQAFEKWKEKKLEYLKEKTRREKEyERAKKQKEEeavAEKKKDSLTAFEKWSERKEALLKQKEKEKIN----ERRKEE 585
Cdd:pfam13904 52 QPLEAYENWLAAKQRQRQKELQAQKE-EREKEEQEA---ELRKRLAKEKYQEWLQRKARQQTKKREESHKqkaaESASKS 127
|
90 100 110
....*....|....*....|....*....|....*...
gi 1251770290 586 LKRAEKKDKDKQAISEYEKWLEKKERQERIERKQKKRH 623
Cdd:pfam13904 128 LAKPERKVSQEEAKEVLQEWERKKLEQQQRKREEEQRE 165
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
345-622 |
1.86e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.30 E-value: 1.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 345 AEPAKKANEDRNTKNKKTTNNRVSSASGRlmTSEFLKRSGPTKRSPSAATSSHYLGSLKVLDQKQPRKQSLEPDKADHIR 424
Cdd:PTZ00121 1172 AEDAKKAEAARKAEEVRKAEELRKAEDAR--KAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEER 1249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 425 AAVYQEWLEKKNVyLHEMHRIKRIESENLRIQNEQKKAAKREEALASFEAWKAMKEKEAKRIAAKKRleEKNKKKTEEEN 504
Cdd:PTZ00121 1250 NNEEIRKFEEARM-AHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAK--KADEAKKKAEE 1326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 505 AMRKGEALQAFEKWKEKKLEYLKEKTRREKEYERAKKQKEE--EAVAEKKKDSLTAFEKWSERKEALLKQKEKEKINERR 582
Cdd:PTZ00121 1327 AKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEaaEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1251770290 583 KEELKRAE----------KKDKDKQAISEYEKWLEKKERQERIERKQKKR 622
Cdd:PTZ00121 1407 ADELKKAAaakkkadeakKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1456
|
|
| CCDC34 |
pfam13904 |
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several ... |
555-645 |
1.94e-06 |
|
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known.
Pssm-ID: 464032 [Multi-domain] Cd Length: 221 Bit Score: 49.32 E-value: 1.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 555 SLTAFEKWSERKEallKQKEKEKINERRKEELKRAEKKDKDKQAISEYEKWLEKKERQERIERKQKKRHSFLESETHPPW 634
Cdd:pfam13904 53 PLEAYENWLAAKQ---RQRQKELQAQKEEREKEEQEAELRKRLAKEKYQEWLQRKARQQTKKREESHKQKAAESASKSLA 129
|
90
....*....|.
gi 1251770290 635 SPPSRTAPSKV 645
Cdd:pfam13904 130 KPERKVSQEEA 140
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
407-621 |
1.04e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 407 QKQPRKQSLEPDKADHIRAAVYQEWLE--KKNVYLHEMHRIKRIESENLRIQNEQKKAakrEEALASFEAWKAMKEKEAK 484
Cdd:PTZ00121 1267 RRQAAIKAEEARKADELKKAEEKKKADeaKKAEEKKKADEAKKKAEEAKKADEAKKKA---EEAKKKADAAKKKAEEAKK 1343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 485 RIAAKKRleEKNKKKTEEENAMRKGEALQAFEKWKEKKLEYLKEKTRREKEYERAKKQKEEEavaEKKKDSLTAFEKWSE 564
Cdd:PTZ00121 1344 AAEAAKA--EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED---KKKADELKKAAAAKK 1418
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 565 RKEALLKQ-KEKEKINERRK--EELKRAEKKDKDKQAISEYEKWLEKKERQERIERKQKK 621
Cdd:PTZ00121 1419 KADEAKKKaEEKKKADEAKKkaEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
|
|
| tolA_full |
TIGR02794 |
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
446-614 |
1.26e-05 |
|
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 47.92 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 446 KRIESENLRIQNEQKKAAKREEALASfEAWKAMKEKEAKRIAAKKRLEEKNKKKTEEENAMRKGEA-LQAFEKWK---EK 521
Cdd:TIGR02794 46 GAVAQQANRIQQQKKPAAKKEQERQK-KLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAaKQAEEKQKqaeEA 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 522 KLEYLKEKTRREKEYERAKKQKEEEAVAEKKKDSLTAFEKWSERKEALLKQKEKEKINERRKEELKRAEKKDKDKQAISE 601
Cdd:TIGR02794 125 KAKQAAEAKAKAEAEAERKAKEEAAKQAEEEAKAKAAAEAKKKAEEAKKKAEAEAKAKAEAEAKAKAEEAKAKAEAAKAK 204
|
170
....*....|...
gi 1251770290 602 YEKWLEKKERQER 614
Cdd:TIGR02794 205 AAAEAAAKAEAEA 217
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
446-629 |
2.00e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.01 E-value: 2.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 446 KRIESENLRIQNEQKKAAKREEALASFEAwkAMKEKEAKRIAAKKRLEEKNKKKTEEENAMRkgEALQAFEKWKEKKLEY 525
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEELEE--ELEEAEEELEEAEAELAEAEEALLEAEAELA--EAEEELEELAEELLEA 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 526 LKEKTRREKEYERAKKQ----KEEEAVAEKKKDSLTAFEKWSERKEALLKQKEKEKINERRKEELKRAEKKDKDKQAISE 601
Cdd:COG1196 392 LRAAAELAAQLEELEEAeealLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
170 180
....*....|....*....|....*...
gi 1251770290 602 YEKWLEKKERQERIERKQKKRHSFLESE 629
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEA 499
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
345-622 |
2.90e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 2.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 345 AEPAKKANEDRNTKNKKTTNNRVSSASGR---LMTSEFLKRSGPTKRSPSAATSSHYLGSLKVLDQKQPRKQSLEPDKAD 421
Cdd:PTZ00121 1239 AEEAKKAEEERNNEEIRKFEEARMAHFARrqaAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAD 1318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 422 HIRAAVYQ-----EWLEKKNVYLHEMHRIKRIESEnlRIQNEQKKAAKREEALASFEAWKAMKEKEAKRIAAKKRLEEKN 496
Cdd:PTZ00121 1319 EAKKKAEEakkkaDAAKKKAEEAKKAAEAAKAEAE--AAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 497 KKKTEEENamRKGEALQAFEKWKeKKLEYLKEKTRREKEYERAKKQKEEEAVAEKKKDSLtafEKWSERKEALLKQKEKE 576
Cdd:PTZ00121 1397 KKKAEEDK--KKADELKKAAAAK-KKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKA---EEAKKAEEAKKKAEEAK 1470
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1251770290 577 KINERRK--EELKRAE----KKDKDKQAISEYEKWLEKKERQERIERKQKKR 622
Cdd:PTZ00121 1471 KADEAKKkaEEAKKADeakkKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522
|
|
| CCDC34 |
pfam13904 |
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several ... |
441-608 |
2.92e-05 |
|
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known.
Pssm-ID: 464032 [Multi-domain] Cd Length: 221 Bit Score: 45.85 E-value: 2.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 441 EMHRIKRIESENLRIQNEQKKaaKREEALASFEAWKAMKEKEAKRiaaKKRLEEKNKKKTEEENAMRKGEALQAFEKWKE 520
Cdd:pfam13904 28 SLDSSSQSSSLTYARKLEGLK--LERQPLEAYENWLAAKQRQRQK---ELQAQKEEREKEEQEAELRKRLAKEKYQEWLQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 521 KKlEYLKEKTRREKEYERAKKQKEEEAVAEKKKDSLTA----FEKWSERKEALLKQKEKEKINERRKEELKRAEKKDKDK 596
Cdd:pfam13904 103 RK-ARQQTKKREESHKQKAAESASKSLAKPERKVSQEEakevLQEWERKKLEQQQRKREEEQREQLKKEEEEQERKQLAE 181
|
170
....*....|..
gi 1251770290 597 QAiseYEKWLEK 608
Cdd:pfam13904 182 KA---WQKWMKN 190
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
431-623 |
4.13e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.89 E-value: 4.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 431 WLEKKNVYLHEMHRI---KRIESENLRIQNEQKK-----AAKREEALASFE--AWKAMKEKEAKRIAAKKRLEEKNKKKT 500
Cdd:pfam02463 110 YINGKNVTKKEVAELlesQGISPEAYNFLVQGGKieiiaMMKPERRLEIEEeaAGSRLKRKKKEALKKLIEETENLAELI 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 501 EEENAMRKGEALQAFEKWKEKKLEYLKEKTRREKEYERAKKQKEEEAVAEKKKDSLTAFEKWSERKEALLKQKEKEKInE 580
Cdd:pfam02463 190 IDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKL-A 268
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1251770290 581 RRKEELKRAEKKDKDKQAISEYEKWLEKKERQERIERKQKKRH 623
Cdd:pfam02463 269 QVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVD 311
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
429-619 |
4.18e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 4.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 429 QEWLEKKNVYLHEMHrIKRIESENLRIQNEQKKAAKREEALASFEAWKAMKEKEAKRIAAKKRLEEKNKKKTEEENAMRK 508
Cdd:COG4717 55 ADELFKPQGRKPELN-LKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQE 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 509 GEALQAFEKWKEKKLEYLKEKTRREKEYERAKKQKEEEaVAEKKKDSLTAFEKWSERKEALLKQ--KEKEKINERR---K 583
Cdd:COG4717 134 LEALEAELAELPERLEELEERLEELRELEEELEELEAE-LAELQEELEELLEQLSLATEEELQDlaEELEELQQRLaelE 212
|
170 180 190
....*....|....*....|....*....|....*..
gi 1251770290 584 EELKRAEKKDKD-KQAISEYEKWLEKKERQERIERKQ 619
Cdd:COG4717 213 EELEEAQEELEElEEELEQLENELEAAALEERLKEAR 249
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
451-622 |
5.66e-05 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 45.68 E-value: 5.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 451 ENLRIQNEQKKAAKREEALASFEAWKAMKEKEAKRIAAKKRLEEKNKKKTEEENAMRKgeALQAFEKWKEKK-----LEY 525
Cdd:pfam13868 83 EEREQKRQEEYEEKLQEREQMDEIVERIQEEDQAEAEEKLEKQRQLREEIDEFNEEQA--EWKELEKEEEREederiLEY 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 526 LKEKTRREKEYERAKKQKEEEAVAEKKKDS---LTAFEKWSERKEALLKQKEKEKINERRKEELKRAEKKDKDKQAISE- 601
Cdd:pfam13868 161 LKEKAEREEEREAEREEIEEEKEREIARLRaqqEKAQDEKAERDELRAKLYQEEQERKERQKEREEAEKKARQRQELQQa 240
|
170 180
....*....|....*....|.
gi 1251770290 602 YEKWLEKKERQERIERKQKKR 622
Cdd:pfam13868 241 REEQIELKERRLAEEAEREEE 261
|
|
| CCDC47 |
pfam07946 |
PAT complex subunit CCDC47; This family represents CCDC47 proteins which are a component of ... |
527-598 |
1.21e-04 |
|
PAT complex subunit CCDC47; This family represents CCDC47 proteins which are a component of the PAT complex, an endoplasmic reticulum (ER)-resident membrane multiprotein complex that facilitates multi-pass membrane proteins insertion into membranes. The PAT complex, formed by CCDC47 and Asterix proteins, acts as an intramembrane chaperone by directly interacting with nascent transmembrane domains (TMDs), releasing its substrates upon correct folding, and is needed for optimal biogenesis of multi-pass membrane proteins. CCDC47 is required to maintain the stability of Asterix. CCDC47 is associated with various membrane-associated processes and is component of a ribosome-associated ER translocon complex involved in multi-pass membrane protein transport into the ER membrane and biogenesis. It is also involved in the regulation of calcium ion homeostasis in the ER, being also required for proper protein degradation via the ERAD (ER-associated degradation) pathway.
Pssm-ID: 462322 Cd Length: 323 Bit Score: 44.48 E-value: 1.21e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1251770290 527 KEKTRREKEYERAKKQKEEEAVAEKKkdsltafekwsERKEALLKQKEKEKINERRKEELKRAEKKDKDKQA 598
Cdd:pfam07946 261 KAKKTREEEIEKIKKAAEEERAEEAQ-----------EKKEEAKKKEREEKLAKLSPEEQRKYEEKERKKEQ 321
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
346-629 |
1.44e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.13 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 346 EPAKKANEDRNTKNKKTTNNRVSSASGRLMTSEFLKRSGPTKRSPSAATSShylgslkvldQKQPRKQSLEPDKADHIRA 425
Cdd:PTZ00121 1402 EDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK----------AEEAKKAEEAKKKAEEAKK 1471
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 426 AvyqEWLEKKNVYLHEMHRIKRIESENLRIQNEQKKAA----KREEALASFEAWKAMKEKEAKRiaAKKRLEEKNKKKTE 501
Cdd:PTZ00121 1472 A---DEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAeakkKADEAKKAEEAKKADEAKKAEE--AKKADEAKKAEEKK 1546
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 502 EENAMRKGEALQAFEKwKEKKLEYLKEKTRREKEYERAKKQKEEEAVAEKKKDSLTAFEKWSERKEALLKQKEKEKINER 581
Cdd:PTZ00121 1547 KADELKKAEELKKAEE-KKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEEL 1625
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1251770290 582 RKEE----------LKRAEKKDKDKQAISEYEKWLEKKERQERIERKQKKRHSFLESE 629
Cdd:PTZ00121 1626 KKAEeekkkveqlkKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
441-622 |
3.19e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.96 E-value: 3.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 441 EMHRIKriESENLRIQNEQKKAAKREEalasFEAWKAMKEKEAKRIAAKKRLEEKNKKKTEEENAMRKGEaLQAFEKWKE 520
Cdd:pfam17380 373 EISRMR--ELERLQMERQQKNERVRQE----LEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQRE-VRRLEEERA 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 521 KKLEYLK-EKTRREKEYERAKKQKEEeavAEKKKDSLTAFEKWSERKEAL--------LKQKEKEKINERRKEELKRAEK 591
Cdd:pfam17380 446 REMERVRlEEQERQQQVERLRQQEEE---RKRKKLELEKEKRDRKRAEEQrrkilekeLEERKQAMIEEERKRKLLEKEM 522
|
170 180 190
....*....|....*....|....*....|.
gi 1251770290 592 KDKDKQAISEYEKWLEKKERQERIERKQKKR 622
Cdd:pfam17380 523 EERQKAIYEEERRREAEEERRKQQEMEERRR 553
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
446-629 |
3.24e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 3.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 446 KRIESENLRIQNEQKKAAKREEALasFEAWKAMKEKEAKRIAAKKRLEEKNKKKTEEENAMRkgEALQAFEKWKEKKLEY 525
Cdd:COG1196 267 AELEELRLELEELELELEEAQAEE--YELLAELARLEQDIARLEERRRELEERLEELEEELA--ELEEELEELEEELEEL 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 526 LKEKTRREKEYERAKKQKE--EEAVAEKKKDSLTAFEKWSERKEALLKQKEKEKINERRKEELKRAEKKDKDKQAISEYE 603
Cdd:COG1196 343 EEELEEAEEELEEAEAELAeaEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE 422
|
170 180
....*....|....*....|....*.
gi 1251770290 604 KWLEKKERQERIERKQKKRHSFLESE 629
Cdd:COG1196 423 LEELEEALAELEEEEEEEEEALEEAA 448
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
520-610 |
5.16e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 43.15 E-value: 5.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 520 EKKLEYLK-EKTRREKE-----YERAKKQKEEEAVAEKKKDSLTAfeKWSERKEALLKQKEKEKINERRKEELKRAEKKD 593
Cdd:COG0542 417 ERRLEQLEiEKEALKKEqdeasFERLAELRDELAELEEELEALKA--RWEAEKELIEEIQELKEELEQRYGKIPELEKEL 494
|
90
....*....|....*..
gi 1251770290 594 KDKQAISEYEKWLEKKE 610
Cdd:COG0542 495 AELEEELAELAPLLREE 511
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
525-631 |
7.70e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 42.39 E-value: 7.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 525 YLKEKTRREKEYERAKKQKEEEAVAEKKkdsltafEKWSERKEALLK-QKEKEKINERRKEELKRAEKK--DKDKQAISE 601
Cdd:PRK12705 24 LLKKRQRLAKEAERILQEAQKEAEEKLE-------AALLEAKELLLReRNQQRQEARREREELQREEERlvQKEEQLDAR 96
|
90 100 110
....*....|....*....|....*....|
gi 1251770290 602 YEKWLEKKERQERIERKQKKRHSFLESETH 631
Cdd:PRK12705 97 AEKLDNLENQLEEREKALSARELELEELEK 126
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
425-621 |
8.03e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.65 E-value: 8.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 425 AAVYQEWLEKKNVYLHEMH---RIKRIESENLRIQNEQKKAAKREEALASFEAWKAMKEKEAKRIAAKKRL---EEKNKK 498
Cdd:pfam02463 162 AAGSRLKRKKKEALKKLIEeteNLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLklnEERIDL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 499 KTEEENAMRKGEALQAFEKWKEKKLEYLKEKTRREKEYERAKKQKEEEAVAEKKKDSLTAFEKWSERKEALLKQ------ 572
Cdd:pfam02463 242 LQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKlkesek 321
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1251770290 573 ----KEKEKINERRKEELKRAEKKDKDKQAISEYEKWLEKKERQERIERKQKK 621
Cdd:pfam02463 322 ekkkAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEE 374
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
408-593 |
8.26e-04 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 42.10 E-value: 8.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 408 KQPRKQSLEPDKADHIRAAVYQEWLEKKNVYLHEMHRIKRIESENLRIQNEQKKAAKR------------EEALASFEAW 475
Cdd:PRK09510 66 RQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAakqaalkqkqaeEAAAKAAAAA 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 476 KAMKEKEAKRI--AAKKRLEEKNKKKTEEENAMRKGEALQAFEKWKEKKLEYLKEKTRREKEYERAKKQKEEEAVAEKKK 553
Cdd:PRK09510 146 KAKAEAEAKRAaaAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKA 225
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1251770290 554 dsltAFEKWSERKEALLKQKEKEKINERRKEELKRAEKKD 593
Cdd:PRK09510 226 ----AAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAEVDD 261
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
451-624 |
1.93e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.67 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 451 ENLRIQNEQKKAAKREEALASFEAWKAMKEKEAKRIAAKKRLEEKNKKKTEEENA--MRKGEALQAFEKWKEKKLEYLKE 528
Cdd:PTZ00121 1209 EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAhfARRQAAIKAEEARKADELKKAEE 1288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 529 KtrreKEYERAKKQKEEEAVAEKKKdsltafeKWSERKEALLKQKEKEKINERRKEELKRAE-KKDKDKQAISEYEKWLE 607
Cdd:PTZ00121 1289 K----KKADEAKKAEEKKKADEAKK-------KAEEAKKADEAKKKAEEAKKKADAAKKKAEeAKKAAEAAKAEAEAAAD 1357
|
170
....*....|....*..
gi 1251770290 608 KKERQERIERKQKKRHS 624
Cdd:PTZ00121 1358 EAEAAEEKAEAAEKKKE 1374
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
476-629 |
2.62e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 2.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 476 KAMKEKEAKRIAAKKRLEEKNKKKTEEENAMRKGEALQA-FEKWKEK--KLEYLKEKTRREKEYERAKKQ-KEEEAVAEK 551
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAeLEELREEleKLEKLLQLLPLYQELEALEAElAELPERLEE 150
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1251770290 552 KKDSLTAFEKWSERKEALLKQKEKEKINERRKEELKRAEKKDKDKQAISEYEKWLEKKERQERIERKQKKRHSFLESE 629
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
446-629 |
2.67e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.11 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 446 KRIESENLRIQNEQKKAAKREEALASFEAWKAMKEKEAKRIAAKKRLEEKN--KKKTEEENAMRKGEALQAFEKWKEKKL 523
Cdd:pfam02463 251 EEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSEllKLERRKVDDEEKLKESEKEKKKAEKEL 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 524 EYLKEK-TRREKEYERAKKQKEEEAVAEKKKDSLTAFEKWSERKEALLKQKEKEKINERRKEELKRAEKKDKDKQAISEY 602
Cdd:pfam02463 331 KKEKEEiEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLL 410
|
170 180 190
....*....|....*....|....*....|..
gi 1251770290 603 EKWLEKKE-----RQERIERKQKKRHSFLESE 629
Cdd:pfam02463 411 LELARQLEdllkeEKKEELEILEEEEESIELK 442
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
444-625 |
3.61e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 3.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 444 RIKRIESENLRIQNEQKKAAKREEALAsfEAWKAMKEKEAKRIAAKKRLEEKNKKK-----TEEENAMRKGEALQAFEKW 518
Cdd:COG4942 70 RIRALEQELAALEAELAELEKEIAELR--AELEAQKEELAELLRALYRLGRQPPLAlllspEDFLDAVRRLQYLKYLAPA 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 519 KEKKLEYLKEKTRREKeyerakkQKEEEAVAEKKKDSLTAFEKWSERKEALLKQKEKEKINERRKEELKRAEKKDKDKQA 598
Cdd:COG4942 148 RREQAEELRADLAELA-------ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQ 220
|
170 180
....*....|....*....|....*...
gi 1251770290 599 -ISEYEKWLEKKERQERIERKQKKRHSF 625
Cdd:COG4942 221 eAEELEALIARLEAEAAAAAERTPAAGF 248
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
448-613 |
5.24e-03 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 39.86 E-value: 5.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 448 IESENLRIQNEQKKAAKREEALASFEAwkAMKEKEAKRIAAKKRLEeknkkkteeenAMRKGEALQAFEKWKEKKLEylK 527
Cdd:COG2268 186 LDALGRRKIAEIIRDARIAEAEAERET--EIAIAQANREAEEAELE-----------QEREIETARIAEAEAELAKK--K 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 528 EKTRREKEYERAKKQKE-EEAVAEKKKDSLTAFEKWSERKEALLKQKEKekinERRKEELKRAEKK--DKDKQAIseyek 604
Cdd:COG2268 251 AEERREAETARAEAEAAyEIAEANAEREVQRQLEIAEREREIELQEKEA----EREEAELEADVRKpaEAEKQAA----- 321
|
....*....
gi 1251770290 605 wlEKKERQE 613
Cdd:COG2268 322 --EAEAEAE 328
|
|
| RRP36 |
pfam06102 |
rRNA biogenesis protein RRP36; RRP36 is involved in the early processing steps of the pre-rRNA. |
519-621 |
5.81e-03 |
|
rRNA biogenesis protein RRP36; RRP36 is involved in the early processing steps of the pre-rRNA.
Pssm-ID: 461829 [Multi-domain] Cd Length: 158 Bit Score: 37.92 E-value: 5.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 519 KEKKLEYLKEKTRREKEYERAKKQKEEEAVAEKKKDsltAFEKWSERKEAL--LKQKEKEKINE-RRKEELKRAEKKDKD 595
Cdd:pfam06102 58 RKKEIEELKKQLKKTKDPEEKEELKRTLQSMESRLK---AKKRKDREREVLkeHKKEEKEKVKQgKKPFYLKKSEKKKLL 134
|
90 100
....*....|....*....|....*.
gi 1251770290 596 KQAisEYEKWLEKKERQERIERKQKK 621
Cdd:pfam06102 135 LKE--KFEELKKSGKLDKAIEKKRKK 158
|
|
| tolA_full |
TIGR02794 |
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
528-622 |
9.51e-03 |
|
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 38.67 E-value: 9.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770290 528 EKTRREKEYERAKKQKEEEAVAEKKKDSLTAFEKWSERKEALLKQKEKEKINERRKEELKRAEKKDKDKQAISEYEKWLE 607
Cdd:TIGR02794 74 EQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAERKAKEEAAKQAE 153
|
90
....*....|....*
gi 1251770290 608 KKERQERIERKQKKR 622
Cdd:TIGR02794 154 EEAKAKAAAEAKKKA 168
|
|
| |
