NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1251770356|ref|NP_001343419|]
View 

protein SNORC isoform 2 precursor [Mus musculus]

Protein Classification

protein SNORC( domain architecture ID 11239061)

protein SNORC is a DUF4690 domain-containing protein that plays a role in the regulation of chondrocyte maturation and postnatal endochondral ossification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF4690 pfam15756
Small Novel Rich in Cartilage; This family of proteins is found in eukaryotes and include ...
 25-120 1.89e-27

Small Novel Rich in Cartilage; This family of proteins is found in eukaryotes and include SNORC, a cartilage specific small membrane proteoglycan that plays a role in the regulation of chondrocyte maturation and postnatal endochondral ossification. There are two conserved sequence motifs: LGPGAI and LRKF.


:

Pssm-ID: 464849  Cd Length: 96  Bit Score: 96.81  E-value: 1.89e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770356  25 EGPQEPDPTLWNEPIELPSGEGPLESTSHNQEFAVSGPPFPTSAPAPEDSTPPARVDQDGGSLGPGAIAAIVIAALLATC 104
Cdd:pfam15756   1 ETPQDPAPTLWNEPQELPSGDGPFDVTTKDRPPDLTGPPPPTSTPEPEDSTHLHRLDEGDGSLGPGAIAAIVIAVLLGTS 80

                          90
                  ....*....|....*.
gi 1251770356 105 VVLALVVVALRKFSAS 120
Cdd:pfam15756  81 VLLALVVITLRKFSAS 96
 
Name Accession Description Interval E-value
DUF4690 pfam15756
Small Novel Rich in Cartilage; This family of proteins is found in eukaryotes and include ...
 25-120 1.89e-27

Small Novel Rich in Cartilage; This family of proteins is found in eukaryotes and include SNORC, a cartilage specific small membrane proteoglycan that plays a role in the regulation of chondrocyte maturation and postnatal endochondral ossification. There are two conserved sequence motifs: LGPGAI and LRKF.


Pssm-ID: 464849  Cd Length: 96  Bit Score: 96.81  E-value: 1.89e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770356  25 EGPQEPDPTLWNEPIELPSGEGPLESTSHNQEFAVSGPPFPTSAPAPEDSTPPARVDQDGGSLGPGAIAAIVIAALLATC 104
Cdd:pfam15756   1 ETPQDPAPTLWNEPQELPSGDGPFDVTTKDRPPDLTGPPPPTSTPEPEDSTHLHRLDEGDGSLGPGAIAAIVIAVLLGTS 80

                          90
                  ....*....|....*.
gi 1251770356 105 VVLALVVVALRKFSAS 120
Cdd:pfam15756  81 VLLALVVITLRKFSAS 96
 
Name Accession Description Interval E-value
DUF4690 pfam15756
Small Novel Rich in Cartilage; This family of proteins is found in eukaryotes and include ...
 25-120 1.89e-27

Small Novel Rich in Cartilage; This family of proteins is found in eukaryotes and include SNORC, a cartilage specific small membrane proteoglycan that plays a role in the regulation of chondrocyte maturation and postnatal endochondral ossification. There are two conserved sequence motifs: LGPGAI and LRKF.


Pssm-ID: 464849  Cd Length: 96  Bit Score: 96.81  E-value: 1.89e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251770356  25 EGPQEPDPTLWNEPIELPSGEGPLESTSHNQEFAVSGPPFPTSAPAPEDSTPPARVDQDGGSLGPGAIAAIVIAALLATC 104
Cdd:pfam15756   1 ETPQDPAPTLWNEPQELPSGDGPFDVTTKDRPPDLTGPPPPTSTPEPEDSTHLHRLDEGDGSLGPGAIAAIVIAVLLGTS 80

                          90
                  ....*....|....*.
gi 1251770356 105 VVLALVVVALRKFSAS 120
Cdd:pfam15756  81 VLLALVVITLRKFSAS 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH