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Conserved domains on  [gi|1767344731|ref|NP_001362188|]
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phenylalanine--tRNA ligase, mitochondrial isoform 3 [Homo sapiens]

Protein Classification

phenylalanine--tRNA ligase( domain architecture ID 1006086)

phenylalanine--tRNA ligase catalyzes the synthesis of phenylalanyl-tRNA (Phe)

CATH:  3.30.70.380|3.30.930.10
EC:  6.1.1.20
Gene Ontology:  GO:0005524|GO:0004826|GO:0000049|GO:0006432

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN02788 super family cl33567
phenylalanine-tRNA synthetase
 1-218 8.28e-115

phenylalanine-tRNA synthetase


The actual alignment was detected with superfamily member PLN02788:

Pssm-ID: 215422 [Multi-domain]  Cd Length: 402  Bit Score: 333.27  E-value: 8.28e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731   1 MEAVKLVEFDLKQTLTRLMAHLFGDeLEIRWVDCYFPFTHPSFEMEINFHGEWLEVLGCGVMEQQLVNSAGAQDRIGWAF 80
Cdd:PLN02788  189 LDGTDLAAEDLKKTLEGLARHLFGD-VEMRWVDAYFPFTNPSFELEIFFKGEWLEVLGCGVTEQEILKNNGRSDNVAWAF 267

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731  81 GLGLERLAMILYDIPDIRLFWCEDERFLKQFCVSNInqKVKFQPLSKYPAVINDISFWLPSEnYAENDFYDLVRTIGGDL 160
Cdd:PLN02788  268 GLGLERLAMVLFDIPDIRLFWSDDERFTSQFKEGQL--GVKFKPYSKYPPCYKDISFWISDE-FTENNLCEVVRGIAGDL 344

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1767344731 161 VEKVDLIDKFVHPKTHKTSHCYRITYRHMERTLSQREVRHIHQALQEAAVQLLGVEGR 218
Cdd:PLN02788  345 VEEVKLIDNFTNPKKGKTSHCYRIVYRSMERSLTDEEINALQDKVREEVQKKLGVELR 402
 
Name Accession Description Interval E-value
PLN02788 PLN02788
phenylalanine-tRNA synthetase
 1-218 8.28e-115

phenylalanine-tRNA synthetase


Pssm-ID: 215422 [Multi-domain]  Cd Length: 402  Bit Score: 333.27  E-value: 8.28e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731   1 MEAVKLVEFDLKQTLTRLMAHLFGDeLEIRWVDCYFPFTHPSFEMEINFHGEWLEVLGCGVMEQQLVNSAGAQDRIGWAF 80
Cdd:PLN02788  189 LDGTDLAAEDLKKTLEGLARHLFGD-VEMRWVDAYFPFTNPSFELEIFFKGEWLEVLGCGVTEQEILKNNGRSDNVAWAF 267

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731  81 GLGLERLAMILYDIPDIRLFWCEDERFLKQFCVSNInqKVKFQPLSKYPAVINDISFWLPSEnYAENDFYDLVRTIGGDL 160
Cdd:PLN02788  268 GLGLERLAMVLFDIPDIRLFWSDDERFTSQFKEGQL--GVKFKPYSKYPPCYKDISFWISDE-FTENNLCEVVRGIAGDL 344

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1767344731 161 VEKVDLIDKFVHPKTHKTSHCYRITYRHMERTLSQREVRHIHQALQEAAVQLLGVEGR 218
Cdd:PLN02788  345 VEEVKLIDNFTNPKKGKTSHCYRIVYRSMERSLTDEEINALQDKVREEVQKKLGVELR 402
pheS_mito TIGR00469
phenylalanyl-tRNA synthetase, mitochondrial; Unlike all other known phenylalanyl-tRNA ...
 3-216 9.55e-90

phenylalanyl-tRNA synthetase, mitochondrial; Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This model models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species. [Protein synthesis, tRNA aminoacylation]


Pssm-ID: 129561 [Multi-domain]  Cd Length: 460  Bit Score: 271.56  E-value: 9.55e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731   3 AVKLVEFDLKQTLTRLMAHLFG---------------DELEIRWVDCYFPFTHPSFEMEINFHGEWLEVLGCGVMEQQLV 67
Cdd:TIGR00469 224 AVDLCEHELKHSIEGITKDLFGkkissmiknkanntpKELKVRWIDAYFPFTAPSWEIEIWFKDEWLELCGCGIIRHDIL 303

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731  68 NSAGAQ--DRIGWAFGLGLERLAMILYDIPDIRLFWCEDERFLKQFCVSNINQKVKFQPLSKYPAVINDISFWLPSE--- 142
Cdd:TIGR00469 304 LRAGVHpsETIGWAFGLGLDRIAMLLFDIPDIRLFWSNDEGFLRQFSEGDLHLIPKFKPISHHPGCFNDLAFWLPEDied 383

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1767344731 143 --NYAENDFYDLVRTIGGDLVEKVDLIDKFVHPKTHKTSHCYRITYRHMERTLSQREVRHIHQALQEAAVQLLGVE 216
Cdd:TIGR00469 384 daGFHENDFMDIIRNIAGDLVEQIKLVDKFKHPKTGKKSMCFRINYQHMDRNLTNAEVNEIHDMIASALVDEFNVE 459
PheRS_alpha_core cd00496
Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class ...
 1-106 9.19e-48

Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.


Pssm-ID: 238277 [Multi-domain]  Cd Length: 218  Bit Score: 156.17  E-value: 9.19e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731   1 MEAV----KLVEFDLKQTLTRLMAHLFGDELEIRWVDCYFPFTHPSFEMEINFHG--EWLEVLGCGVMEQQLVNSAGAQ- 73
Cdd:cd00496   106 IEGLvvdkGLTFADLKGTLEEFAKELFGPITKVRFRPSYFPFTEPSFEVDVYCPGclGWLEILGCGMVRPEVLENAGIDe 185

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1767344731  74 DRIGWAFGLGLERLAMILYDIPDIRLFWCEDER 106
Cdd:cd00496   186 EYSGFAFGIGLERLAMLKYGIPDIRLFYSNDLR 218
PheS COG0016
Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]; ...
 10-111 6.53e-33

Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]; Phenylalanyl-tRNA synthetase alpha subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 439787 [Multi-domain]  Cd Length: 339  Bit Score: 120.93  E-value: 6.53e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731  10 DLKQTLTRLMAHLFGDELEIRWVDCYFPFTHPSFEMEINF------------HGEWLEVLGCGVMEQQLVNSAGaqdrI- 76
Cdd:COG0016   223 DLKGTLEEFAKAFFGEDVKVRFRPSYFPFTEPSAEVDISCficggkgcrvckGTGWLEILGCGMVHPNVLRAVG----Id 298

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1767344731  77 -----GWAFGLGLERLAMILYDIPDIRLFWCEDERFLKQF 111
Cdd:COG0016   299 peeysGFAFGMGIERLAMLKYGIDDIRLFFENDLRFLRQF 338
FDX-ACB smart00896
Ferredoxin-fold anticodon binding domain; This is the anticodon binding domain found in some ...
 126-218 1.01e-32

Ferredoxin-fold anticodon binding domain; This is the anticodon binding domain found in some phenylalanyl tRNA synthetases. The domain has a ferredoxin fold, consisting of an alpha+beta sandwich with anti-parallel beta-sheets (beta-alpha-beta x2).


Pssm-ID: 214893 [Multi-domain]  Cd Length: 93  Bit Score: 113.67  E-value: 1.01e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731  126 SKYPAVINDISFWLPsENYAENDFYDLVRTIGGDLVEKVDLIDKFVH-PKTHKTSHCYRITYRHMERTLSQREVRHIHQA 204
Cdd:smart00896   1 SKFPAVRRDLAFVVD-EDVPAAELLDAIREAGGDLLEDVRLFDVYEGgIPEGKKSLAYRLTYQSPDRTLTDEEVNAIHDK 79

                           90
                   ....*....|....
gi 1767344731  205 LQEAAVQLLGVEGR 218
Cdd:smart00896  80 IVAALEKKFGAELR 93
tRNA-synt_2d pfam01409
tRNA synthetases class II core domain (F); Other tRNA synthetase sub-families are too ...
 10-111 3.44e-31

tRNA synthetases class II core domain (F); Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only phenylalanyl-tRNA synthetases. This is the core catalytic domain.


Pssm-ID: 396130 [Multi-domain]  Cd Length: 245  Bit Score: 114.21  E-value: 3.44e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731  10 DLKQTLTRLMAHLFGDELEIRWVDCYFPFTHPSFEMEINF--HGEWLEVLGCGVMEQQLVNSAG-AQDRIGWAFGLGLER 86
Cdd:pfam01409 141 DLKGVLEEFLRKFFGFEVKVRFRPSYFPFTEPSAEVDVYVckLGGWLEVGGAGMVHPNVLEAVGiDEDYSGFAFGLGVER 220

                          90       100
                  ....*....|....*....|....*
gi 1767344731  87 LAMILYDIPDIRLFWCEDERFLKQF 111
Cdd:pfam01409 221 LAMLKYGIDDIRDLYENDLRFLRQF 245
 
Name Accession Description Interval E-value
PLN02788 PLN02788
phenylalanine-tRNA synthetase
 1-218 8.28e-115

phenylalanine-tRNA synthetase


Pssm-ID: 215422 [Multi-domain]  Cd Length: 402  Bit Score: 333.27  E-value: 8.28e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731   1 MEAVKLVEFDLKQTLTRLMAHLFGDeLEIRWVDCYFPFTHPSFEMEINFHGEWLEVLGCGVMEQQLVNSAGAQDRIGWAF 80
Cdd:PLN02788  189 LDGTDLAAEDLKKTLEGLARHLFGD-VEMRWVDAYFPFTNPSFELEIFFKGEWLEVLGCGVTEQEILKNNGRSDNVAWAF 267

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731  81 GLGLERLAMILYDIPDIRLFWCEDERFLKQFCVSNInqKVKFQPLSKYPAVINDISFWLPSEnYAENDFYDLVRTIGGDL 160
Cdd:PLN02788  268 GLGLERLAMVLFDIPDIRLFWSDDERFTSQFKEGQL--GVKFKPYSKYPPCYKDISFWISDE-FTENNLCEVVRGIAGDL 344

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1767344731 161 VEKVDLIDKFVHPKTHKTSHCYRITYRHMERTLSQREVRHIHQALQEAAVQLLGVEGR 218
Cdd:PLN02788  345 VEEVKLIDNFTNPKKGKTSHCYRIVYRSMERSLTDEEINALQDKVREEVQKKLGVELR 402
pheS_mito TIGR00469
phenylalanyl-tRNA synthetase, mitochondrial; Unlike all other known phenylalanyl-tRNA ...
 3-216 9.55e-90

phenylalanyl-tRNA synthetase, mitochondrial; Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This model models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species. [Protein synthesis, tRNA aminoacylation]


Pssm-ID: 129561 [Multi-domain]  Cd Length: 460  Bit Score: 271.56  E-value: 9.55e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731   3 AVKLVEFDLKQTLTRLMAHLFG---------------DELEIRWVDCYFPFTHPSFEMEINFHGEWLEVLGCGVMEQQLV 67
Cdd:TIGR00469 224 AVDLCEHELKHSIEGITKDLFGkkissmiknkanntpKELKVRWIDAYFPFTAPSWEIEIWFKDEWLELCGCGIIRHDIL 303

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731  68 NSAGAQ--DRIGWAFGLGLERLAMILYDIPDIRLFWCEDERFLKQFCVSNINQKVKFQPLSKYPAVINDISFWLPSE--- 142
Cdd:TIGR00469 304 LRAGVHpsETIGWAFGLGLDRIAMLLFDIPDIRLFWSNDEGFLRQFSEGDLHLIPKFKPISHHPGCFNDLAFWLPEDied 383

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1767344731 143 --NYAENDFYDLVRTIGGDLVEKVDLIDKFVHPKTHKTSHCYRITYRHMERTLSQREVRHIHQALQEAAVQLLGVE 216
Cdd:TIGR00469 384 daGFHENDFMDIIRNIAGDLVEQIKLVDKFKHPKTGKKSMCFRINYQHMDRNLTNAEVNEIHDMIASALVDEFNVE 459
PheRS_alpha_core cd00496
Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class ...
 1-106 9.19e-48

Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.


Pssm-ID: 238277 [Multi-domain]  Cd Length: 218  Bit Score: 156.17  E-value: 9.19e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731   1 MEAV----KLVEFDLKQTLTRLMAHLFGDELEIRWVDCYFPFTHPSFEMEINFHG--EWLEVLGCGVMEQQLVNSAGAQ- 73
Cdd:cd00496   106 IEGLvvdkGLTFADLKGTLEEFAKELFGPITKVRFRPSYFPFTEPSFEVDVYCPGclGWLEILGCGMVRPEVLENAGIDe 185

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1767344731  74 DRIGWAFGLGLERLAMILYDIPDIRLFWCEDER 106
Cdd:cd00496   186 EYSGFAFGIGLERLAMLKYGIPDIRLFYSNDLR 218
PheS COG0016
Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]; ...
 10-111 6.53e-33

Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]; Phenylalanyl-tRNA synthetase alpha subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 439787 [Multi-domain]  Cd Length: 339  Bit Score: 120.93  E-value: 6.53e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731  10 DLKQTLTRLMAHLFGDELEIRWVDCYFPFTHPSFEMEINF------------HGEWLEVLGCGVMEQQLVNSAGaqdrI- 76
Cdd:COG0016   223 DLKGTLEEFAKAFFGEDVKVRFRPSYFPFTEPSAEVDISCficggkgcrvckGTGWLEILGCGMVHPNVLRAVG----Id 298

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1767344731  77 -----GWAFGLGLERLAMILYDIPDIRLFWCEDERFLKQF 111
Cdd:COG0016   299 peeysGFAFGMGIERLAMLKYGIDDIRLFFENDLRFLRQF 338
FDX-ACB smart00896
Ferredoxin-fold anticodon binding domain; This is the anticodon binding domain found in some ...
 126-218 1.01e-32

Ferredoxin-fold anticodon binding domain; This is the anticodon binding domain found in some phenylalanyl tRNA synthetases. The domain has a ferredoxin fold, consisting of an alpha+beta sandwich with anti-parallel beta-sheets (beta-alpha-beta x2).


Pssm-ID: 214893 [Multi-domain]  Cd Length: 93  Bit Score: 113.67  E-value: 1.01e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731  126 SKYPAVINDISFWLPsENYAENDFYDLVRTIGGDLVEKVDLIDKFVH-PKTHKTSHCYRITYRHMERTLSQREVRHIHQA 204
Cdd:smart00896   1 SKFPAVRRDLAFVVD-EDVPAAELLDAIREAGGDLLEDVRLFDVYEGgIPEGKKSLAYRLTYQSPDRTLTDEEVNAIHDK 79

                           90
                   ....*....|....
gi 1767344731  205 LQEAAVQLLGVEGR 218
Cdd:smart00896  80 IVAALEKKFGAELR 93
tRNA-synt_2d pfam01409
tRNA synthetases class II core domain (F); Other tRNA synthetase sub-families are too ...
 10-111 3.44e-31

tRNA synthetases class II core domain (F); Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only phenylalanyl-tRNA synthetases. This is the core catalytic domain.


Pssm-ID: 396130 [Multi-domain]  Cd Length: 245  Bit Score: 114.21  E-value: 3.44e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731  10 DLKQTLTRLMAHLFGDELEIRWVDCYFPFTHPSFEMEINF--HGEWLEVLGCGVMEQQLVNSAG-AQDRIGWAFGLGLER 86
Cdd:pfam01409 141 DLKGVLEEFLRKFFGFEVKVRFRPSYFPFTEPSAEVDVYVckLGGWLEVGGAGMVHPNVLEAVGiDEDYSGFAFGLGVER 220

                          90       100
                  ....*....|....*....|....*
gi 1767344731  87 LAMILYDIPDIRLFWCEDERFLKQF 111
Cdd:pfam01409 221 LAMLKYGIDDIRDLYENDLRFLRQF 245
pheS TIGR00468
phenylalanyl-tRNA synthetase, alpha subunit; Most phenylalanyl-tRNA synthetases are ...
 10-111 1.06e-26

phenylalanyl-tRNA synthetase, alpha subunit; Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment. [Protein synthesis, tRNA aminoacylation]


Pssm-ID: 273095 [Multi-domain]  Cd Length: 293  Bit Score: 103.55  E-value: 1.06e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731  10 DLKQTLtRLMAHLFGDELEIRWVDCYFPFTHPSFEMEInFHGE---WLEVLGCGVMEQQLVNSAGAQDRI-GWAFGLGLE 85
Cdd:TIGR00468 189 NLKGFL-EEFLKKMFGETEIRFRPSYFPFTEPSAEIDV-YCPEgkgWLEVLGAGMFRPEVLEPMGIDPTYpGFAWGIGIE 266

                          90       100
                  ....*....|....*....|....*.
gi 1767344731  86 RLAMILYDIPDIRLFWCEDERFLKQF 111
Cdd:TIGR00468 267 RLAMLKYGITDIRDLYENDLRFLRQF 292
FDX-ACB pfam03147
Ferredoxin-fold anticodon binding domain; This is the anticodon binding domain found in some ...
 126-218 8.16e-23

Ferredoxin-fold anticodon binding domain; This is the anticodon binding domain found in some phenylalanyl tRNA synthetases. The domain has a ferredoxin fold.


Pssm-ID: 460826 [Multi-domain]  Cd Length: 94  Bit Score: 88.31  E-value: 8.16e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731 126 SKYPAVINDISFWLPsENYAENDFYDLVRTIGGDLVEKVDLIDKFVHPK--THKTSHCYRITYRHMERTLSQREVRHIHQ 203
Cdd:pfam03147   1 SKYPAVRRDLAFVVD-EDVPAADILKAIREAGGELLESVELFDVYRGEKipEGKKSLAFRLTFQSPERTLTDEEVNAIIE 79

                          90
                  ....*....|....*
gi 1767344731 204 ALQEAAVQLLGVEGR 218
Cdd:pfam03147  80 KIVEALEKKFGAELR 94
pheT_bact TIGR00472
phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; Every known example of ...
 9-218 1.77e-16

phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end. [Protein synthesis, tRNA aminoacylation]


Pssm-ID: 273097 [Multi-domain]  Cd Length: 797  Bit Score: 77.33  E-value: 1.77e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731   9 FDLKQTLTRLMAHLFGDELEIRWVDCYFPFTHPSFEMEINFHGEwleVLGC-GVMEQQLVNSAGAQDRIgWAFGLGLERL 87
Cdd:TIGR00472 615 YDLKGDVESLLELLGLSDDVYFKNTAENEELHPGQSATIYLKGK---KIGFiGELHPEIAKKYDLKEPT-FVFELDLDRL 690

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731  88 AMILYDIPdirlfwcederflkqfcvsninqkvKFQPLSKYPAVINDISFWLPSENYAeNDFYDLVRTIGGDLVEKVDLI 167
Cdd:TIGR00472 691 LESLKKVP-------------------------KYRPISKFPAVTRDISFLVPKDVPA-NEIIKLIKKSGLELLEEVELF 744

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1767344731 168 DKFV--HPKTHKTSHCYRITYRHMERTLSQREVRHIHQALQEAAVQLLGVEGR 218
Cdd:TIGR00472 745 DVYQgkNIGEGKKSLALRLVLRDKERTLTDEEINKIVEKVLNALKEKLGAELR 797
pheT PRK00629
phenylalanyl-tRNA synthetase subunit beta; Reviewed
 119-216 6.38e-16

phenylalanyl-tRNA synthetase subunit beta; Reviewed


Pssm-ID: 234804 [Multi-domain]  Cd Length: 791  Bit Score: 75.98  E-value: 6.38e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731 119 KVKFQPLSKYPAVINDISFWLPsENYAENDFYDLVRTIGGDLVEKVDLIDKFVHPK--THKTSHCYRITYRHMERTLSQR 196
Cdd:PRK00629  690 LPKYKPISKFPAVRRDLALVVD-EDVPAADILKAIKKAGGKLLESVELFDVYEGKGigEGKKSLAFRLTFQDPDRTLTDE 768

                          90       100
                  ....*....|....*....|
gi 1767344731 197 EVRHIHQALQEAAVQLLGVE 216
Cdd:PRK00629  769 EINAAMDKIVAALEEKFGAE 788
pheS PRK04172
phenylalanine--tRNA ligase subunit alpha;
10-109 1.12e-15

phenylalanine--tRNA ligase subunit alpha;


Pssm-ID: 235239 [Multi-domain]  Cd Length: 489  Bit Score: 74.87  E-value: 1.12e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731  10 DLKQTLTRlMAHLFGDElEIRWVDCYFPFTHPSFEMEInFH--GEWLEVLGCGVMEQQLVNSAGAQDRIGwAFGLGLERL 87
Cdd:PRK04172  389 DLLGILKE-FYKRLGFE-EVKFRPAYFPFTEPSVEVEV-YHegLGWVELGGAGIFRPEVLEPLGIDVPVL-AWGLGIERL 464

                          90       100
                  ....*....|....*....|..
gi 1767344731  88 AMILYDIPDIRLFWCEDERFLK 109
Cdd:PRK04172  465 AMLRLGLDDIRDLYSSDIEWLR 486
PheT COG0072
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; ...
 113-216 1.99e-15

Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; Phenylalanyl-tRNA synthetase beta subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 439842 [Multi-domain]  Cd Length: 793  Bit Score: 74.43  E-value: 1.99e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731 113 VSNINQKVKFQPLSKYPAVINDISFWLPsENYAENDFYDLVRTIGGDLVEKVDLIDKFVHPK--THKTSHCYRITYRHME 190
Cdd:COG0072   686 LELARKVPKYKPISKFPAVRRDLALVVD-EDVPAADVLDAIRKAAGKLLEDVRLFDVYEGKGvpEGKKSLAFSLTLQDPD 764

                          90       100
                  ....*....|....*....|....*.
gi 1767344731 191 RTLSQREVRHIHQALQEAAVQLLGVE 216
Cdd:COG0072   765 RTLTDEEIDAAMDKIVAALEKKFGAE 790
syfB CHL00192
phenylalanyl-tRNA synthetase beta chain; Provisional
 122-218 1.21e-07

phenylalanyl-tRNA synthetase beta chain; Provisional


Pssm-ID: 214391 [Multi-domain]  Cd Length: 704  Bit Score: 51.63  E-value: 1.21e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731 122 FQPLSKYPAVINDISFWLPsENYAENDFYDLVRTIGGDLVEKVDLIDKFVHP--KTHKTSHCYRITYRHMERTLSQREVR 199
Cdd:CHL00192  606 YQPYSSYPKIIRDLSFIIK-KSISISKIKELIYQNGDNLLESITLFDYYKGKsiPNGHTSLGLRLTFQSENKTLTNEEID 684

                          90
                  ....*....|....*....
gi 1767344731 200 HIHQALQEAAVQLLGVEGR 218
Cdd:CHL00192  685 RIQQNLQKVLEKKLNAEIR 703
PTZ00326 PTZ00326
phenylalanyl-tRNA synthetase alpha chain; Provisional
 35-100 2.41e-06

phenylalanyl-tRNA synthetase alpha chain; Provisional


Pssm-ID: 240361 [Multi-domain]  Cd Length: 494  Bit Score: 47.27  E-value: 2.41e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1767344731  35 YFPFTHPSfeMEI-NFH---GEWLEVLGCGVMEQQLVNSAGAQDR---IGWafGLGLERLAMILYDIPDIR-LF 100
Cdd:PTZ00326  419 FNPYTEPS--MEIfGYHpglKKWVEVGNSGIFRPEMLRPMGFPEDvtvIAW--GLSLERPTMIKYGIKNIRdLF 488
PLN02853 PLN02853
Probable phenylalanyl-tRNA synthetase alpha chain
 28-100 3.25e-06

Probable phenylalanyl-tRNA synthetase alpha chain


Pssm-ID: 215458 [Multi-domain]  Cd Length: 492  Bit Score: 46.98  E-value: 3.25e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767344731  28 EIRWVDCYFPFTHPSfeMEI-NFH---GEWLEVLGCGVMEQQLVNSAGAQDR---IGWafGLGLERLAMILYDIPDIR-L 99
Cdd:PLN02853  397 KLRFKPAYNPYTEPS--MEIfSYHeglKKWVEVGNSGMFRPEMLLPMGLPEDvnvIAW--GLSLERPTMILYGIDNIRdL 472


                  .
gi 1767344731 100 F 100
Cdd:PLN02853  473 F 473
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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