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Conserved domains on  [gi|1972295407|ref|NP_001379443|]
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C6 domain-containing protein [Caenorhabditis elegans]

Protein Classification

C6 domain-containing protein( domain architecture ID 10660190)

C6 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
C6 smart01048
This domain of unknown function is found in a C. elegans protein; It is presumed to be an ...
 131-238 9.16e-15

This domain of unknown function is found in a C. elegans protein; It is presumed to be an extracellular domain. The C6 domain contains six conserved cysteine residues in most copies of the domain. However some copies of the domain are missing cysteine residues 1 and 3 suggesting that these form a disulphide bridge.


:

Pssm-ID: 214994  Cd Length: 98  Bit Score: 67.91  E-value: 9.16e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972295407  131 CNPNAVSLGMGDANNpqiFIDVTYNNYLSTTDPVTGIVTSTMTVTCSALN-GYNTYMLFNGGQGGPADnqNLPQTISITL 209
Cdd:smart01048   1 CSSCANLLGVGDNAT---QIDGTYGDFLTTPTIGTATGCSTVTITCSGTSaGDNAYLLFNGPAENQLD--SGPQTVTITL 75

                           90       100
                   ....*....|....*....|....*....
gi 1972295407  210 VCTSDtMVWNYEvtingVTYTRAVSSVTC 238
Cdd:smart01048  76 TCNSD-GQWVYV-----TTVGTVVTSVSC 98
 
Name Accession Description Interval E-value
C6 smart01048
This domain of unknown function is found in a C. elegans protein; It is presumed to be an ...
 131-238 9.16e-15

This domain of unknown function is found in a C. elegans protein; It is presumed to be an extracellular domain. The C6 domain contains six conserved cysteine residues in most copies of the domain. However some copies of the domain are missing cysteine residues 1 and 3 suggesting that these form a disulphide bridge.


Pssm-ID: 214994  Cd Length: 98  Bit Score: 67.91  E-value: 9.16e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972295407  131 CNPNAVSLGMGDANNpqiFIDVTYNNYLSTTDPVTGIVTSTMTVTCSALN-GYNTYMLFNGGQGGPADnqNLPQTISITL 209
Cdd:smart01048   1 CSSCANLLGVGDNAT---QIDGTYGDFLTTPTIGTATGCSTVTITCSGTSaGDNAYLLFNGPAENQLD--SGPQTVTITL 75

                           90       100
                   ....*....|....*....|....*....
gi 1972295407  210 VCTSDtMVWNYEvtingVTYTRAVSSVTC 238
Cdd:smart01048  76 TCNSD-GQWVYV-----TTVGTVVTSVSC 98
C6 pfam01681
C6 domain; This domain of unknown function is found in the C. elegans protein Swiss:Q19522. It ...
 131-238 2.36e-08

C6 domain; This domain of unknown function is found in the C. elegans protein Swiss:Q19522. It is presumed to be an extracellular domain. The C6 domain contains six conserved cysteine residues in most copies of the domain. However some copies of the domain are missing cysteine residues 1 and 3 suggesting that these form a disulphide bridge.


Pssm-ID: 460292  Cd Length: 90  Bit Score: 50.20  E-value: 2.36e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972295407 131 CNPNAVSLGmgdannpQIFIDVTYNNYLSTTDPVTGIVTSTMTVTCSALNGYNTYMLFNGGQGgpaDNQNLPQTISITLV 210
Cdd:pfam01681   1 CSPLLITLG-------GFEIDVTYTDGMTTLDHGTATGCSTVTITCAGTTSAENAYILGGPFN---DGQPLTGTVTITLT 70

                          90       100
                  ....*....|....*....|....*...
gi 1972295407 211 CTSDTMvWNYevtingvTYTRAVSSVTC 238
Cdd:pfam01681  71 CNSVGQ-WVY-------TYGRVITSVSC 90
 
Name Accession Description Interval E-value
C6 smart01048
This domain of unknown function is found in a C. elegans protein; It is presumed to be an ...
 131-238 9.16e-15

This domain of unknown function is found in a C. elegans protein; It is presumed to be an extracellular domain. The C6 domain contains six conserved cysteine residues in most copies of the domain. However some copies of the domain are missing cysteine residues 1 and 3 suggesting that these form a disulphide bridge.


Pssm-ID: 214994  Cd Length: 98  Bit Score: 67.91  E-value: 9.16e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972295407  131 CNPNAVSLGMGDANNpqiFIDVTYNNYLSTTDPVTGIVTSTMTVTCSALN-GYNTYMLFNGGQGGPADnqNLPQTISITL 209
Cdd:smart01048   1 CSSCANLLGVGDNAT---QIDGTYGDFLTTPTIGTATGCSTVTITCSGTSaGDNAYLLFNGPAENQLD--SGPQTVTITL 75

                           90       100
                   ....*....|....*....|....*....
gi 1972295407  210 VCTSDtMVWNYEvtingVTYTRAVSSVTC 238
Cdd:smart01048  76 TCNSD-GQWVYV-----TTVGTVVTSVSC 98
C6 pfam01681
C6 domain; This domain of unknown function is found in the C. elegans protein Swiss:Q19522. It ...
 131-238 2.36e-08

C6 domain; This domain of unknown function is found in the C. elegans protein Swiss:Q19522. It is presumed to be an extracellular domain. The C6 domain contains six conserved cysteine residues in most copies of the domain. However some copies of the domain are missing cysteine residues 1 and 3 suggesting that these form a disulphide bridge.


Pssm-ID: 460292  Cd Length: 90  Bit Score: 50.20  E-value: 2.36e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972295407 131 CNPNAVSLGmgdannpQIFIDVTYNNYLSTTDPVTGIVTSTMTVTCSALNGYNTYMLFNGGQGgpaDNQNLPQTISITLV 210
Cdd:pfam01681   1 CSPLLITLG-------GFEIDVTYTDGMTTLDHGTATGCSTVTITCAGTTSAENAYILGGPFN---DGQPLTGTVTITLT 70

                          90       100
                  ....*....|....*....|....*...
gi 1972295407 211 CTSDTMvWNYevtingvTYTRAVSSVTC 238
Cdd:pfam01681  71 CNSVGQ-WVY-------TYGRVITSVSC 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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