|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
11-328 |
7.24e-28 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 112.70 E-value: 7.24e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2041085744 11 HKDLIHDVSFDFHGRRMATCSSDQSVKVWDkseSGDWHCTASWKTHSGSVWRVTWAHPefGQVLASCSFDRTAAVWEEIV 90
Cdd:COG2319 119 HTGAVRSVAFSPDGKTLASGSADGTVRLWD---LATGKLLRTLTGHSGAVTSVAFSPD--GKLLASGSDDGTVRLWDLAT 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2041085744 91 GESNDKLRGQSHWvkrttlvdsrtsVTDVKFAPKhmGLMLATCSADGIVRVYEAPDvmNLSQWSLQHEIScklCCSCISW 170
Cdd:COG2319 194 GKLLRTLTGHTGA------------VRSVAFSPD--GKLLASGSADGTVRLWDLAT--GKLLRTLTGHSG---SVRSVAF 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2041085744 171 NPSSSRahppmIAVGSDDSSpnsmakVQIFeyneNTRKYAKAETLMTVTDPVHDIAFAPNlGRsfhILAIATKD--VRIF 248
Cdd:COG2319 255 SPDGRL-----LASGSADGT------VRLW----DLATGELLRTLTGHSGGVNSVAFSPD-GK---LLASGSDDgtVRLW 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2041085744 249 TLKPVRkeltssggptkfeihIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKAnymDNWKCTGILKGNGSPVNG 328
Cdd:COG2319 316 DLATGK---------------LLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDL---ATGELLRTLTGHTGAVTS 377
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
11-306 |
3.93e-25 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 102.80 E-value: 3.93e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2041085744 11 HKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSesgDWHCTASWKTHSGSVWRVTWaHPEfGQVLASCSFDRTAAVWEEIV 90
Cdd:cd00200 50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLE---TGECVRTLTGHTSYVSSVAF-SPD-GRILSSSSRDKTIKVWDVET 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2041085744 91 GESNDKLRGQSHWVkrttlvdsrtsvTDVKFAPKHMglMLATCSADGIVRVYeapdvmNLSQWSLQHEISC-KLCCSCIS 169
Cdd:cd00200 125 GKCLTTLRGHTDWV------------NSVAFSPDGT--FVASSSQDGTIKLW------DLRTGKCVATLTGhTGEVNSVA 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2041085744 170 WNPSSSRahppmIAVGSDDSSpnsmakVQIFEynenTRKYAKAETLMTVTDPVHDIAFAPNLgrsfHILAIATKD--VRI 247
Cdd:cd00200 185 FSPDGEK-----LLSSSSDGT------IKLWD----LSTGKCLGTLRGHENGVNSVAFSPDG----YLLASGSEDgtIRV 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 2041085744 248 FTLKPVRkeltssggptkfeihIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWK 306
Cdd:cd00200 246 WDLRTGE---------------CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
271-306 |
6.27e-05 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 39.99 E-value: 6.27e-05
10 20 30
....*....|....*....|....*....|....*.
gi 2041085744 271 VAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWK 306
Cdd:smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
271-305 |
2.31e-04 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 38.10 E-value: 2.31e-04
10 20 30
....*....|....*....|....*....|....*
gi 2041085744 271 VAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLW 305
Cdd:pfam00400 4 LKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVW 38
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
11-328 |
7.24e-28 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 112.70 E-value: 7.24e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2041085744 11 HKDLIHDVSFDFHGRRMATCSSDQSVKVWDkseSGDWHCTASWKTHSGSVWRVTWAHPefGQVLASCSFDRTAAVWEEIV 90
Cdd:COG2319 119 HTGAVRSVAFSPDGKTLASGSADGTVRLWD---LATGKLLRTLTGHSGAVTSVAFSPD--GKLLASGSDDGTVRLWDLAT 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2041085744 91 GESNDKLRGQSHWvkrttlvdsrtsVTDVKFAPKhmGLMLATCSADGIVRVYEAPDvmNLSQWSLQHEIScklCCSCISW 170
Cdd:COG2319 194 GKLLRTLTGHTGA------------VRSVAFSPD--GKLLASGSADGTVRLWDLAT--GKLLRTLTGHSG---SVRSVAF 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2041085744 171 NPSSSRahppmIAVGSDDSSpnsmakVQIFeyneNTRKYAKAETLMTVTDPVHDIAFAPNlGRsfhILAIATKD--VRIF 248
Cdd:COG2319 255 SPDGRL-----LASGSADGT------VRLW----DLATGELLRTLTGHSGGVNSVAFSPD-GK---LLASGSDDgtVRLW 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2041085744 249 TLKPVRkeltssggptkfeihIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKAnymDNWKCTGILKGNGSPVNG 328
Cdd:COG2319 316 DLATGK---------------LLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDL---ATGELLRTLTGHTGAVTS 377
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
11-308 |
1.90e-25 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 105.76 E-value: 1.90e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2041085744 11 HKDLIHDVSFDFHGRRMATCSSDQSVKVWDkseSGDWHCTASWKTHSGSVWRVTWAHPefGQVLASCSFDRTAAVWEeiv 90
Cdd:COG2319 161 HSGAVTSVAFSPDGKLLASGSDDGTVRLWD---LATGKLLRTLTGHTGAVRSVAFSPD--GKLLASGSADGTVRLWD--- 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2041085744 91 gesndkLRGQSHwvkRTTLVDSRTSVTDVKFAPKhmGLMLATCSADGIVRVYEAPDvmNLSQWSLQHEISCklcCSCISW 170
Cdd:COG2319 233 ------LATGKL---LRTLTGHSGSVRSVAFSPD--GRLLASGSADGTVRLWDLAT--GELLRTLTGHSGG---VNSVAF 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2041085744 171 NPSSSRahppmIAVGSDDSSpnsmakVQIFeyneNTRKYAKAETLMTVTDPVHDIAFAPNlGRsfhILAIATKD--VRIF 248
Cdd:COG2319 297 SPDGKL-----LASGSDDGT------VRLW----DLATGKLLRTLTGHTGAVRSVAFSPD-GK---TLASGSDDgtVRLW 357
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2041085744 249 TLKPVRkeltssggptkfeihIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKAN 308
Cdd:COG2319 358 DLATGE---------------LLRTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWDLA 402
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
11-306 |
3.93e-25 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 102.80 E-value: 3.93e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2041085744 11 HKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSesgDWHCTASWKTHSGSVWRVTWaHPEfGQVLASCSFDRTAAVWEEIV 90
Cdd:cd00200 50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLE---TGECVRTLTGHTSYVSSVAF-SPD-GRILSSSSRDKTIKVWDVET 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2041085744 91 GESNDKLRGQSHWVkrttlvdsrtsvTDVKFAPKHMglMLATCSADGIVRVYeapdvmNLSQWSLQHEISC-KLCCSCIS 169
Cdd:cd00200 125 GKCLTTLRGHTDWV------------NSVAFSPDGT--FVASSSQDGTIKLW------DLRTGKCVATLTGhTGEVNSVA 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2041085744 170 WNPSSSRahppmIAVGSDDSSpnsmakVQIFEynenTRKYAKAETLMTVTDPVHDIAFAPNLgrsfHILAIATKD--VRI 247
Cdd:cd00200 185 FSPDGEK-----LLSSSSDGT------IKLWD----LSTGKCLGTLRGHENGVNSVAFSPDG----YLLASGSEDgtIRV 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 2041085744 248 FTLKPVRkeltssggptkfeihIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWK 306
Cdd:cd00200 246 WDLRTGE---------------CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
11-327 |
4.68e-21 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 91.63 E-value: 4.68e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2041085744 11 HKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESgdwHCTASWKTHSGSVWRVTWAHpeFGQVLASCSFDRTAAVWEEIV 90
Cdd:cd00200 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG---ELLRTLKGHTGPVRDVAASA--DGTYLASGSSDKTIRLWDLET 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2041085744 91 GESNDKLRGQSHWvkrttlvdsrtsVTDVKFAPKhmGLMLATCSADGIVRVYEAPDVMnlsqwsLQHEISCKLC-CSCIS 169
Cdd:cd00200 83 GECVRTLTGHTSY------------VSSVAFSPD--GRILSSSSRDKTIKVWDVETGK------CLTTLRGHTDwVNSVA 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2041085744 170 WNPSSSrahppMIAVGSDDSSpnsmakvqIFEYNENTRKYAKaeTLMTVTDPVHDIAFAPNLGRsfHILAIATKDVRIFT 249
Cdd:cd00200 143 FSPDGT-----FVASSSQDGT--------IKLWDLRTGKCVA--TLTGHTGEVNSVAFSPDGEK--LLSSSSDGTIKLWD 205
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2041085744 250 LKpvrkeltssggptkfEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKanyMDNWKCTGILKGNGSPVN 327
Cdd:cd00200 206 LS---------------TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWD---LRTGECVQTLSGHTNSVT 265
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
9-146 |
1.07e-14 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 74.56 E-value: 1.07e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2041085744 9 ADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDkseSGDWHCTASWKTHSGSVWRVTWaHPEfGQVLASCSFDRTAAVWEE 88
Cdd:COG2319 285 TGHSGGVNSVAFSPDGKLLASGSDDGTVRLWD---LATGKLLRTLTGHTGAVRSVAF-SPD-GKTLASGSDDGTVRLWDL 359
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 2041085744 89 IVGESNDKLRGQSHWvkrttlvdsrtsVTDVKFAPKhmGLMLATCSADGIVRVYEAPD 146
Cdd:COG2319 360 ATGELLRTLTGHTGA------------VTSVAFSPD--GRTLASGSADGTVRLWDLAT 403
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
10-190 |
2.33e-13 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 69.67 E-value: 2.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2041085744 10 DHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSEsgdWHCTASWKTHSGSVWRVTWaHPEfGQVLASCSFDRTAAVWEei 89
Cdd:cd00200 133 GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT---GKCVATLTGHTGEVNSVAF-SPD-GEKLLSSSSDGTIKLWD-- 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2041085744 90 vgesndkLRGQsHWVKrtTLVDSRTSVTDVKFAPKhmGLMLATCSADGIVRVYeapDVMNLSQW-SLQ-HEIScklcCSC 167
Cdd:cd00200 206 -------LSTG-KCLG--TLRGHENGVNSVAFSPD--GYLLASGSEDGTIRVW---DLRTGECVqTLSgHTNS----VTS 266
|
170 180
....*....|....*....|...
gi 2041085744 168 ISWNPSSSRahppmIAVGSDDSS 190
Cdd:cd00200 267 LAWSPDGKR-----LASGSADGT 284
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
214-328 |
8.62e-06 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 47.21 E-value: 8.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2041085744 214 TLMTVTDPVHDIAFAPNlGRsfhILAIATKD--VRIFTLKpvrkeltsSGGPtkfeihiVAQFDNHNSQVWRVSWNITGT 291
Cdd:COG2319 115 TLTGHTGAVRSVAFSPD-GK---TLASGSADgtVRLWDLA--------TGKL-------LRTLTGHSGAVTSVAFSPDGK 175
|
90 100 110
....*....|....*....|....*....|....*..
gi 2041085744 292 VLASSGDDGCVRLWKAnymDNWKCTGILKGNGSPVNG 328
Cdd:COG2319 176 LLASGSDDGTVRLWDL---ATGKLLRTLTGHTGAVRS 209
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
271-306 |
6.27e-05 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 39.99 E-value: 6.27e-05
10 20 30
....*....|....*....|....*....|....*.
gi 2041085744 271 VAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWK 306
Cdd:smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
11-40 |
2.08e-04 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 38.45 E-value: 2.08e-04
10 20 30
....*....|....*....|....*....|
gi 2041085744 11 HKDLIHDVSFDFHGRRMATCSSDQSVKVWD 40
Cdd:smart00320 11 HTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
271-305 |
2.31e-04 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 38.10 E-value: 2.31e-04
10 20 30
....*....|....*....|....*....|....*
gi 2041085744 271 VAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLW 305
Cdd:pfam00400 4 LKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVW 38
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
11-40 |
5.59e-04 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 36.94 E-value: 5.59e-04
10 20 30
....*....|....*....|....*....|
gi 2041085744 11 HKDLIHDVSFDFHGRRMATCSSDQSVKVWD 40
Cdd:pfam00400 10 HTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
210-328 |
6.01e-04 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 41.44 E-value: 6.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2041085744 210 AKAETLMTVTDPVHDIAFAPNLGRSfhILAIATKDVRIFTLkpvrkeltsSGGptkfeiHIVAQFDNHNSQVWRVSWNIT 289
Cdd:COG2319 69 ALLATLLGHTAAVLSVAFSPDGRLL--ASASADGTVRLWDL---------ATG------LLLRTLTGHTGAVRSVAFSPD 131
|
90 100 110
....*....|....*....|....*....|....*....
gi 2041085744 290 GTVLASSGDDGCVRLWKAnymDNWKCTGILKGNGSPVNG 328
Cdd:COG2319 132 GKTLASGSADGTVRLWDL---ATGKLLRTLTGHSGAVTS 167
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
46-87 |
2.61e-03 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 35.37 E-value: 2.61e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 2041085744 46 DWHCTASWKTHSGSVWRVTWAHpeFGQVLASCSFDRTAAVWE 87
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSP--DGKYLASGSDDGTIKLWD 40
|
|
|