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Conserved domains on  [gi|2174210947|ref|NP_001386364|]
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required for excision 1-B domain-containing protein isoform 2 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DNA_repr_REX1B super family cl20847
DNA repair REX1-B; This family of proteins includes Chlamydomonas reinhardtii REX1-B (Required ...
 12-87 1.15e-16

DNA repair REX1-B; This family of proteins includes Chlamydomonas reinhardtii REX1-B (Required for Excision 1-B) which is involved in a light-independent DNA repair pathway.


The actual alignment was detected with superfamily member pfam14966:

Pssm-ID: 434355  Cd Length: 94  Bit Score: 69.56  E-value: 1.15e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2174210947  12 GAHRQYLLSDLHHDfpsYRSVVHEVTQAFAAASCEVLAVEAELAGPrAQPVLARHVRNLQELEQTRLATVALLQVM 87
Cdd:pfam14966  22 EGFKAYLRTGPEYD---YRQLCHEITEEFSSISKEILAIEAALRDP-GRPDLAELIRKLQEQEKEKLELTAKLQVL 93
 
Name Accession Description Interval E-value
DNA_repr_REX1B pfam14966
DNA repair REX1-B; This family of proteins includes Chlamydomonas reinhardtii REX1-B (Required ...
 12-87 1.15e-16

DNA repair REX1-B; This family of proteins includes Chlamydomonas reinhardtii REX1-B (Required for Excision 1-B) which is involved in a light-independent DNA repair pathway.


Pssm-ID: 434355  Cd Length: 94  Bit Score: 69.56  E-value: 1.15e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2174210947  12 GAHRQYLLSDLHHDfpsYRSVVHEVTQAFAAASCEVLAVEAELAGPrAQPVLARHVRNLQELEQTRLATVALLQVM 87
Cdd:pfam14966  22 EGFKAYLRTGPEYD---YRQLCHEITEEFSSISKEILAIEAALRDP-GRPDLAELIRKLQEQEKEKLELTAKLQVL 93
 
Name Accession Description Interval E-value
DNA_repr_REX1B pfam14966
DNA repair REX1-B; This family of proteins includes Chlamydomonas reinhardtii REX1-B (Required ...
 12-87 1.15e-16

DNA repair REX1-B; This family of proteins includes Chlamydomonas reinhardtii REX1-B (Required for Excision 1-B) which is involved in a light-independent DNA repair pathway.


Pssm-ID: 434355  Cd Length: 94  Bit Score: 69.56  E-value: 1.15e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2174210947  12 GAHRQYLLSDLHHDfpsYRSVVHEVTQAFAAASCEVLAVEAELAGPrAQPVLARHVRNLQELEQTRLATVALLQVM 87
Cdd:pfam14966  22 EGFKAYLRTGPEYD---YRQLCHEITEEFSSISKEILAIEAALRDP-GRPDLAELIRKLQEQEKEKLELTAKLQVL 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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