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Conserved domains on  [gi|398364685|ref|NP_014262|]
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mitochondrial 37S ribosomal protein NAM9 [Saccharomyces cerevisiae S288C]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpsD super family cl29647
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 48-172 2.34e-18

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


The actual alignment was detected with superfamily member COG0522:

Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 83.20  E-value: 2.34e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364685  48 AKQETRAYHGehLTEKRWQTVFKpkldsvaqlDASLRGGEIKETpfLLQtfaVLEKRLDFALFRAMFASSVRQARQFILH 127
Cdd:COG0522   55 EKQKLRRIYG--VLEKQFRRYFE---------EAARRKGNTGEN--LLQ---LLERRLDNVVYRLGFAPTRAQARQLVSH 118

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 398364685 128 GNVRVNGVKIKHPSYTLKPGDMFSVKPDkvlealGAKKPSFQEAL 172
Cdd:COG0522  119 GHILVNGKKVNIPSYQVKPGDVIEVREK------SKKLPRIKEAL 157
PRK12704 super family cl36166
phosphodiesterase; Provisional
 183-347 7.84e-04

phosphodiesterase; Provisional


The actual alignment was detected with superfamily member PRK12704:

Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 42.07  E-value: 7.84e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364685 183 NKYVKEAKTEPKEVWEKKLENFEKMSDSNPKKLQFQE-FLRQYNKNLESQQYNALKgctQEgilRKLLNVEKEIGKSNNE 261
Cdd:PRK12704  52 EAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEkRLLQKEENLDRKLELLEK---RE---EELEKKEKELEQKQQE 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364685 262 plsIDELKQGLPEIQDSQL--LESLNNAYQEffksgEIRREIISKCQpDELISLATEMMNPNETTKKELSDgaKSAlrsg 339
Cdd:PRK12704 126 ---LEKKEEELEELIEEQLqeLERISGLTAE-----EAKEILLEKVE-EEARHEAAVLIKEIEEEAKEEAD--KKA---- 190


                 ....*...
gi 398364685 340 KRIIAESV 347
Cdd:PRK12704 191 KEILAQAI 198
 
Name Accession Description Interval E-value
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 48-172 2.34e-18

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 83.20  E-value: 2.34e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364685  48 AKQETRAYHGehLTEKRWQTVFKpkldsvaqlDASLRGGEIKETpfLLQtfaVLEKRLDFALFRAMFASSVRQARQFILH 127
Cdd:COG0522   55 EKQKLRRIYG--VLEKQFRRYFE---------EAARRKGNTGEN--LLQ---LLERRLDNVVYRLGFAPTRAQARQLVSH 118

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 398364685 128 GNVRVNGVKIKHPSYTLKPGDMFSVKPDkvlealGAKKPSFQEAL 172
Cdd:COG0522  119 GHILVNGKKVNIPSYQVKPGDVIEVREK------SKKLPRIKEAL 157
rpsD PRK05327
30S ribosomal protein S4; Validated
 48-172 8.62e-17

30S ribosomal protein S4; Validated


Pssm-ID: 235411 [Multi-domain]  Cd Length: 203  Bit Score: 78.61  E-value: 8.62e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364685  48 AKQETRAYHGehLTEKRWQTVFKpkldsvaqlDAS-LRG--GEIketpfLLQtfaVLEKRLDFALFRAMFASSVRQARQF 124
Cdd:PRK05327  54 EKQKLRRIYG--VLEKQFRRYFK---------EAArRKGntGEN-----LLQ---LLESRLDNVVYRLGFAPTRRQARQL 114

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 398364685 125 ILHGNVRVNGVKIKHPSYTLKPGDMFSVKPDKvlealgAKKPSFQEAL 172
Cdd:PRK05327 115 VSHGHILVNGKKVNIPSYRVKPGDVIEVREKS------KKLPRIKEAL 156
S4 cd00165
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ...
 103-165 5.52e-16

S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.


Pssm-ID: 238095 [Multi-domain]  Cd Length: 70  Bit Score: 72.28  E-value: 5.52e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 398364685 103 KRLDFALFRAMFASSVRQARQFILHGNVRVNGVKIKHPSYTLKPGDMFSVKPDKVLEALGAKK 165
Cdd:cd00165    1 MRLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIVYED 63
S4 smart00363
S4 RNA-binding domain;
103-157 1.39e-15

S4 RNA-binding domain;


Pssm-ID: 214638 [Multi-domain]  Cd Length: 60  Bit Score: 71.08  E-value: 1.39e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 398364685   103 KRLDFALFRAMFASSVRQARQFILHGNVRVNGVKIKHPSYTLKPGDMFSVKPDKV 157
Cdd:smart00363   1 RRLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKEL 55
S4 pfam01479
S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was ...
 104-149 1.53e-15

S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.


Pssm-ID: 396182 [Multi-domain]  Cd Length: 48  Bit Score: 70.60  E-value: 1.53e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 398364685  104 RLDFALFRAMFASSVRQARQFILHGNVRVNGVKIKHPSYTLKPGDM 149
Cdd:pfam01479   2 RLDKVLARLGLASSRSQARQLIEHGRVLVNGKVVKDPSYRVKPGDE 47
rpsD_bact TIGR01017
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ...
 37-172 3.48e-14

ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 200066 [Multi-domain]  Cd Length: 200  Bit Score: 71.18  E-value: 3.48e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364685   37 KSKSLYQQKWTAKQETRAYHGehLTEKRWQTVFKPKLDSVAQLDASLrggeiketpfllqtFAVLEKRLDFALFRAMFAS 116
Cdd:TIGR01017  40 KKLSDYGLQLQEKQKLKFMYG--ITEKQFRKYFKEAKKLKGNTGENL--------------LRLLESRLDNVVYRLGFAP 103

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 398364685  117 SVRQARQFILHGNVRVNGVKIKHPSYTLKPGDMFSVKpDKVLealgaKKPSFQEAL 172
Cdd:TIGR01017 104 TRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIK-EKSK-----KIPLVKENL 153
PRK12704 PRK12704
phosphodiesterase; Provisional
 183-347 7.84e-04

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 42.07  E-value: 7.84e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364685 183 NKYVKEAKTEPKEVWEKKLENFEKMSDSNPKKLQFQE-FLRQYNKNLESQQYNALKgctQEgilRKLLNVEKEIGKSNNE 261
Cdd:PRK12704  52 EAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEkRLLQKEENLDRKLELLEK---RE---EELEKKEKELEQKQQE 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364685 262 plsIDELKQGLPEIQDSQL--LESLNNAYQEffksgEIRREIISKCQpDELISLATEMMNPNETTKKELSDgaKSAlrsg 339
Cdd:PRK12704 126 ---LEKKEEELEELIEEQLqeLERISGLTAE-----EAKEILLEKVE-EEARHEAAVLIKEIEEEAKEEAD--KKA---- 190


                 ....*...
gi 398364685 340 KRIIAESV 347
Cdd:PRK12704 191 KEILAQAI 198
 
Name Accession Description Interval E-value
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 48-172 2.34e-18

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 83.20  E-value: 2.34e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364685  48 AKQETRAYHGehLTEKRWQTVFKpkldsvaqlDASLRGGEIKETpfLLQtfaVLEKRLDFALFRAMFASSVRQARQFILH 127
Cdd:COG0522   55 EKQKLRRIYG--VLEKQFRRYFE---------EAARRKGNTGEN--LLQ---LLERRLDNVVYRLGFAPTRAQARQLVSH 118

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 398364685 128 GNVRVNGVKIKHPSYTLKPGDMFSVKPDkvlealGAKKPSFQEAL 172
Cdd:COG0522  119 GHILVNGKKVNIPSYQVKPGDVIEVREK------SKKLPRIKEAL 157
rpsD PRK05327
30S ribosomal protein S4; Validated
 48-172 8.62e-17

30S ribosomal protein S4; Validated


Pssm-ID: 235411 [Multi-domain]  Cd Length: 203  Bit Score: 78.61  E-value: 8.62e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364685  48 AKQETRAYHGehLTEKRWQTVFKpkldsvaqlDAS-LRG--GEIketpfLLQtfaVLEKRLDFALFRAMFASSVRQARQF 124
Cdd:PRK05327  54 EKQKLRRIYG--VLEKQFRRYFK---------EAArRKGntGEN-----LLQ---LLESRLDNVVYRLGFAPTRRQARQL 114

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 398364685 125 ILHGNVRVNGVKIKHPSYTLKPGDMFSVKPDKvlealgAKKPSFQEAL 172
Cdd:PRK05327 115 VSHGHILVNGKKVNIPSYRVKPGDVIEVREKS------KKLPRIKEAL 156
S4 cd00165
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ...
 103-165 5.52e-16

S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.


Pssm-ID: 238095 [Multi-domain]  Cd Length: 70  Bit Score: 72.28  E-value: 5.52e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 398364685 103 KRLDFALFRAMFASSVRQARQFILHGNVRVNGVKIKHPSYTLKPGDMFSVKPDKVLEALGAKK 165
Cdd:cd00165    1 MRLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIVYED 63
S4 smart00363
S4 RNA-binding domain;
103-157 1.39e-15

S4 RNA-binding domain;


Pssm-ID: 214638 [Multi-domain]  Cd Length: 60  Bit Score: 71.08  E-value: 1.39e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 398364685   103 KRLDFALFRAMFASSVRQARQFILHGNVRVNGVKIKHPSYTLKPGDMFSVKPDKV 157
Cdd:smart00363   1 RRLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKEL 55
S4 pfam01479
S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was ...
 104-149 1.53e-15

S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.


Pssm-ID: 396182 [Multi-domain]  Cd Length: 48  Bit Score: 70.60  E-value: 1.53e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 398364685  104 RLDFALFRAMFASSVRQARQFILHGNVRVNGVKIKHPSYTLKPGDM 149
Cdd:pfam01479   2 RLDKVLARLGLASSRSQARQLIEHGRVLVNGKVVKDPSYRVKPGDE 47
rpsD_bact TIGR01017
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ...
 37-172 3.48e-14

ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 200066 [Multi-domain]  Cd Length: 200  Bit Score: 71.18  E-value: 3.48e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364685   37 KSKSLYQQKWTAKQETRAYHGehLTEKRWQTVFKPKLDSVAQLDASLrggeiketpfllqtFAVLEKRLDFALFRAMFAS 116
Cdd:TIGR01017  40 KKLSDYGLQLQEKQKLKFMYG--ITEKQFRKYFKEAKKLKGNTGENL--------------LRLLESRLDNVVYRLGFAP 103

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 398364685  117 SVRQARQFILHGNVRVNGVKIKHPSYTLKPGDMFSVKpDKVLealgaKKPSFQEAL 172
Cdd:TIGR01017 104 TRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIK-EKSK-----KIPLVKENL 153
rps4 CHL00113
ribosomal protein S4; Reviewed
 94-161 5.64e-13

ribosomal protein S4; Reviewed


Pssm-ID: 177038 [Multi-domain]  Cd Length: 201  Bit Score: 67.55  E-value: 5.64e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 398364685  94 LLQtfaVLEKRLDFALFRAMFASSVRQARQFILHGNVRVNGVKIKHPSYTLKPGDMFSVKPDKVLEAL 161
Cdd:CHL00113  83 LLQ---LLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNL 147
rps4p PRK04051
30S ribosomal protein S4P; Validated
 95-143 8.61e-09

30S ribosomal protein S4P; Validated


Pssm-ID: 179730 [Multi-domain]  Cd Length: 177  Bit Score: 54.88  E-value: 8.61e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 398364685  95 LQTFAVLEKRLDFALFRAMFASSVRQARQFILHGNVRVNGVKIKHPSYT 143
Cdd:PRK04051  95 LTVEDILERRLQTIVYRKGLARTPKQARQFIVHGHIAVNGRRVTSPSYL 143
uS4_arch TIGR01018
ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein ...
 100-145 3.15e-07

ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein S9 as well as archaeal ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273397 [Multi-domain]  Cd Length: 162  Bit Score: 50.12  E-value: 3.15e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 398364685  100 VLEKRLDFALFRAMFASSVRQARQFILHGNVRVNGVKIKHPSYTLK 145
Cdd:TIGR01018 101 FLERRLQTQVYKKGLARTIHQARQLIVHGHIAVNGRVVTSPSYIVR 146
YlmH COG2302
RNA-binding protein YlmH, contains S4-like domain [General function prediction only];
104-153 2.00e-06

RNA-binding protein YlmH, contains S4-like domain [General function prediction only];


Pssm-ID: 441877  Cd Length: 260  Bit Score: 49.00  E-value: 2.00e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 398364685 104 RLDfALFRAMFASSVRQARQFILHGNVRVNGVKIKHPSYTLKPGDMFSVK 153
Cdd:COG2302  185 RLD-AVASAGFGLSRSKAAELIESGKVKVNWKVVDKPSFEVKEGDLISVR 233
YqxC COG1189
Predicted rRNA methylase YqxC, contains S4 and FtsJ domains [Translation, ribosomal structure ...
 103-166 8.04e-06

Predicted rRNA methylase YqxC, contains S4 and FtsJ domains [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440802 [Multi-domain]  Cd Length: 248  Bit Score: 47.36  E-value: 8.04e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 398364685 103 KRLDFALFRAMFASSVRQARQFILHGNVRVNGVKIKhpsytlKPGDMfsVKPDKVLEALGAKKP 166
Cdd:COG1189    1 ERLDVLLVERGLAESREKAQRLIMAGRVLVNGQVVD------KPGTK--VPEDAEIEVKGEELP 56
PRK12704 PRK12704
phosphodiesterase; Provisional
 183-347 7.84e-04

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 42.07  E-value: 7.84e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364685 183 NKYVKEAKTEPKEVWEKKLENFEKMSDSNPKKLQFQE-FLRQYNKNLESQQYNALKgctQEgilRKLLNVEKEIGKSNNE 261
Cdd:PRK12704  52 EAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEkRLLQKEENLDRKLELLEK---RE---EELEKKEKELEQKQQE 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364685 262 plsIDELKQGLPEIQDSQL--LESLNNAYQEffksgEIRREIISKCQpDELISLATEMMNPNETTKKELSDgaKSAlrsg 339
Cdd:PRK12704 126 ---LEKKEEELEELIEEQLqeLERISGLTAE-----EAKEILLEKVE-EEARHEAAVLIKEIEEEAKEEAD--KKA---- 190


                 ....*...
gi 398364685 340 KRIIAESV 347
Cdd:PRK12704 191 KEILAQAI 198
PRK13354 PRK13354
tyrosyl-tRNA synthetase; Provisional
 44-165 8.40e-04

tyrosyl-tRNA synthetase; Provisional


Pssm-ID: 237360 [Multi-domain]  Cd Length: 410  Bit Score: 41.81  E-value: 8.40e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364685  44 QKWTAKQETRAYHGEHLT---EKRWQTVFKpkldsvaqldaslrGGEIKETPFLlqTFAVLEKRLDFALF--RAMFASSV 118
Cdd:PRK13354 295 KKVLAEEITKFVHGEEAAeeaEKIFKALFS--------------GDVKPLKDIP--TFEVSAETKNLVDLlvDLGLEPSK 358

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 398364685 119 RQARQFILHGNVRVNGVKIKHPSYTLKPGDMFSVKPDKVleALGAKK 165
Cdd:PRK13354 359 REARRLIQNGAIKINGEKVTDVDAIINPEDAFDGKFVIL--RRGKKK 403
HslR COG1188
Ribosomal 50S subunit-recycling heat shock protein, contains S4 domain [Translation, ribosomal ...
 104-152 2.61e-03

Ribosomal 50S subunit-recycling heat shock protein, contains S4 domain [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440801  Cd Length: 120  Bit Score: 37.89  E-value: 2.61e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 398364685 104 RLDFALFRAMFASSVRQARQFILHGNVRVNGVKIKhPSYTLKPGDMFSV 152
Cdd:COG1188    6 RLDKWLWAARFFKTRSLAAEACDGGRVRVNGQRAK-PSREVKVGDVLTI 53
TyrS COG0162
Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Tyrosyl-tRNA ...
 108-148 4.00e-03

Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Tyrosyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 439932 [Multi-domain]  Cd Length: 409  Bit Score: 39.63  E-value: 4.00e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 398364685 108 ALFRAMFASSVRQARQFILHGNVRVNGVKIKHPSYTLKPGD 148
Cdd:COG0162  347 LLVEAGLAASKSEARRLIKQGGVSVNGEKVTDPDAVLTAGD 387
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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